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Smart farming: Leveraging IoT and deep learning for sustainable tomato cultivation and pest management 智能农业:利用物联网和深度学习实现可持续番茄种植和病虫害管理
Pub Date : 2024-09-10 DOI: 10.1016/j.cropd.2024.100079
Md Rakibul Hasan , Md. Mahbubur Rahman , Fahim Shahriar , Md. Saikat Islam Khan , Khandaker Mohammad Mohi Uddin , Md. Mosaddik Hasan

Since the world's population is rising continuously, more cultivable land is being utilized for their dwellings. As a result, the amount of food supply is decreasing day by day. In order to address the food shortage, a proper plan and technological breakthroughs is must. Tomato is a kind of vegetable which has the healthy ingredients and essential for our daily food list. The proposed system suggests an IoT based tomato cultivation and pest management system, with the help of deep learning methods. In the IoT implementation, camera module and moisture sensor are used to collect images of tomato plant, soil condition respectively. Based on the moisture content, the water pump will supply the water when it necessary. Besides, the real-time images of tomato leaf will be sent to the server to identify and classify natural enemies like various insect species. In the proposed system seven types of pests are identified with the help of ten deep learning models like InceptionV3, Xception, InceptionResNetV2, MobileNet, MobileNetV2, MobileNetV3Large, MobileNetV3Small, DenseNet121, DenseNet169, DenseNet201. This study has trained with leaves and insects separately to identify whether an image from a tomato plant is insectoid or not. 458 images of pests and 912 images of leaves are utilized in the proposed architecture. The accuracy of classifying insects or leaves using DenseNet201 is 100 ​%. The highest accuracy of 94 ​% is obtained to classify the different insects using the DenseNet201 model.

随着世界人口的不断增长,越来越多的可耕地被用来建造房屋。因此,粮食供应数量与日俱增。为了解决粮食短缺问题,必须制定合理的计划,并在技术上有所突破。番茄是一种含有健康成分的蔬菜,也是我们日常食物清单中必不可少的一种。在深度学习方法的帮助下,拟议的系统提出了一种基于物联网的番茄栽培和病虫害管理系统。在物联网实施过程中,摄像头模块和湿度传感器分别用于采集番茄植株和土壤状况的图像。根据水分含量,水泵会在必要时供水。此外,番茄叶片的实时图像将被发送到服务器,以便对各种昆虫种类等天敌进行识别和分类。在提议的系统中,借助十个深度学习模型,如 InceptionV3、Xception、InceptionResNetV2、MobileNet、MobileNetV2、MobileNetV3Large、MobileNetV3Small、DenseNet121、DenseNet169、DenseNet201,识别了七种害虫。这项研究分别对树叶和昆虫进行了训练,以识别番茄植株的图像是否为昆虫类图像。拟议架构中使用了 458 张害虫图像和 912 张叶子图像。使用 DenseNet201 对昆虫或叶子进行分类的准确率为 100%。使用 DenseNet201 模型对不同昆虫进行分类的准确率最高,达到 94%。
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引用次数: 0
A novel multi trait genotype ideotype distance index (MGIDI) for genotype selection in plant breeding: Application, prospects, and limitations 用于植物育种中基因型选择的新型多性状基因型表意型距离指数(MGIDI):应用、前景和局限性
Pub Date : 2024-09-02 DOI: 10.1016/j.cropd.2024.100074
Pinki Debnath , Kakon Chakma , M. Shafi Ullah Bhuiyan , Reshma Thapa , Ronghui Pan , Delara Akhter

The Multitrait Genotype Ideotype Distance Index (MGIDI) is a strong and adaptable technique for choosing superior genotypes of diverse crops based on numerous attributes. It is a multivariate selection indicator that incorporates different characteristic information into a single value and ranks genotypes based on their distance from an ideal genotype. Breeders can use variable selection criteria including weighting traits and assessing genetic strengths and weaknesses. It organizes attributes into components and chooses optimal genotypes based on many traits using principal component analysis. This review covered the available information regarding the background, applications, prospects, and limitations of MGIDI for crop improvement and breeding in this research. We discussed the significant discoveries and consequences of several studies that used MGIDI to enhance the productivity, excellence, and flexibility of numerous crops, such as bush yam, barley, cassava, cucumber, guar, lentil, maize, rice, bean, soybean, wheat, etc. Additionally, we talked about some of the potential applications of MGIDI for breeding and crop improvement, such as tolerance to salinity, stability analysis, tolerance to waterlogging, mechanism of drought response, performance in agronomy and tuber quality, nutritional value and productivity, adaptability, increased yield, early maturity, and stress resistance etc. Following the upward trend, MGIDI can be considered as a valuable index technique for selection of crop genotypes that can address food security, climate change, and nutritional quality problems worldwide. We expect that this study will spark more research and use of MGIDI in different crops characteristics, contributing to the improvement of plant breeding science.

多性状基因型表型距离指数(MGIDI)是一种基于多种属性选择不同作物优良基因型的强大而适用的技术。它是一种多变量选择指标,将不同的特征信息整合到一个值中,并根据基因型与理想基因型的距离对基因型进行排序。育种者可以使用不同的选择标准,包括加权性状和评估遗传优缺点。它将属性组织成成分,并利用主成分分析法根据许多性状选择最佳基因型。本综述涵盖了有关本研究中用于作物改良和育种的 MGIDI 的背景、应用、前景和局限性的现有信息。我们讨论了一些研究的重大发现和结果,这些研究利用多元智能提高了许多作物的产量、品质和灵活性,如山药、大麦、木薯、黄瓜、瓜尔豆、扁豆、玉米、水稻、豆类、大豆、小麦等。此外,我们还讨论了多元智能在育种和作物改良方面的一些潜在应用,如耐盐性、稳定性分析、耐涝性、抗旱机制、农艺性能和块茎质量、营养价值和生产力、适应性、增产、早熟和抗逆性等。随着这一趋势的发展,MGIDI 可被视为一种有价值的指标技术,用于选择能解决全球粮食安全、气候变化和营养质量问题的作物基因型。我们期待这项研究能引发更多关于 MGIDI 在不同作物特性方面的研究和应用,为提高植物育种科学水平做出贡献。
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引用次数: 0
Decoding post-translational modifications for understanding stress tolerance in plant 解码翻译后修饰,了解植物的抗逆性
Pub Date : 2024-08-30 DOI: 10.1016/j.cropd.2024.100077
Anuradha Pandey, Dipak Gayen

Plants undergo deteriorating stress situations, which has an adverse effect on their overall growth, maturation, and development. To mitigate these situations plants undergo regulatory cellular mechanisms including epigenetic changes at both genomic as well as protein levels. Post-transcriptional as well as translational modifications of proteins enhance its dynamics and complexity along with orchestrating several cellular functions in response to external stimuli. One of the most crucial roles of Post Translational Modification is under the stress tolerance mechanisms in plants. PTM creates a fine-tuning between all regulatory networks and serves as a highly responsible phenomenon. Illustrative analysis of post-translational modification in various signaling pathways has generated new insight for designing crop cultivars towards better development with higher yield and increased tolerance. In this review, we have first introduced post-translational modification and their types. Later, we discussed the prevalent biotic-abiotic stress, plants adaptation to the stress response mechanism, and the participation of PTMs in these stress conditions to highlight better agricultural productivity.

植物会经受不断恶化的压力环境,这对其整体生长、成熟和发育都会产生不利影响。为了缓解这些情况,植物经历了细胞调控机制,包括基因组和蛋白质水平上的表观遗传变化。蛋白质的转录后修饰和翻译修饰增强了其动态性和复杂性,同时还协调了多种细胞功能以响应外部刺激。翻译后修饰最关键的作用之一是植物的抗逆机制。PTM 在所有调控网络之间进行微调,是一种高度负责任的现象。对各种信号通路中的翻译后修饰进行说明性分析,为设计作物栽培品种提供了新的见解,使其在提高产量和耐受性的同时得到更好的发展。在本综述中,我们首先介绍了翻译后修饰及其类型。随后,我们讨论了普遍存在的生物-非生物胁迫、植物对胁迫响应机制的适应以及 PTMs 在这些胁迫条件下的参与,以突出提高农业生产力。
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引用次数: 0
Harnessing image processing for precision disease diagnosis in sugar beet agriculture 利用图像处理对甜菜农业进行精准疾病诊断
Pub Date : 2024-08-29 DOI: 10.1016/j.cropd.2024.100075
Varucha Misra , A.K. Mall

Sugar beet, a sugar crop, faces a persistent threat from foliar and root diseases, leading to substantial yield losses. Traditional methods of disease identification and severity assessment are often time-consuming, error-prone, and impractical, particularly in large production areas. In response to this challenge, researchers have recently turned to innovative solutions involving image processing and machine learning techniques for efficient disease detection in sugar beet plants. Image processing technology has emerged as a rapid and precise disease identification technology in sugar beet. By capitalizing on the ability of image processing to differentiate coloured objects, this approach facilitates the accurate determination of disease severity, enabling timely intervention measures. The urgency of developing faster and more practical methods becomes evident, highlighting the need to decrease human errors in identifying plant diseases and assessing their severity and progression. This review showcases the potential of image processing technology in revolutionizing disease detection strategies for sugar beet crops. The ability to swiftly and accurately determine disease outbreak, severity, and progression addresses a critical gap in current agricultural practices. Image processing technology holds promise as a practical and efficient solution for large-scale disease management in sugar beet cultivation, paving the way for sustainable and high-yield sugar production.

甜菜作为一种糖料作物,一直面临着叶部和根部病害的威胁,导致大量减产。传统的病害识别和严重程度评估方法往往耗时长、易出错且不切实际,尤其是在大面积生产地区。为了应对这一挑战,研究人员最近转向了涉及图像处理和机器学习技术的创新解决方案,以高效检测甜菜植物的病害。图像处理技术已成为一种快速、精确的甜菜病害识别技术。通过利用图像处理区分彩色物体的能力,这种方法有助于准确确定病害严重程度,从而及时采取干预措施。开发更快、更实用的方法的紧迫性显而易见,这突出表明在识别植物病害、评估其严重程度和发展过程时需要减少人为误差。本综述展示了图像处理技术在彻底改变甜菜作物病害检测策略方面的潜力。快速准确地确定病害爆发、严重程度和发展情况的能力解决了当前农业实践中的一个关键缺口。图像处理技术有望成为甜菜种植中大规模病害管理的实用高效解决方案,为实现可持续的高产制糖铺平道路。
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引用次数: 0
Unveiling the protective role of chitosan in Plant Defense: A comprehensive review with emphasis on abiotic stress management 揭示壳聚糖在植物防御中的保护作用:以非生物胁迫管理为重点的全面综述
Pub Date : 2024-08-27 DOI: 10.1016/j.cropd.2024.100076
Pravallika Sree Rayanoothala , Tuward J. Dweh , Sunita Mahapatra , Salma Kayastha

In agricultural scenario, chitosan, a naturally occurring biopolymer derived from chitins, has the ability to function as both a bio-stimulant and an elicitor. Chitosan is produced from chitins. It is suitable for a wide range of uses because it is non-toxic, does not contaminate the environment, and is biocompatible with living things. It improves physiological reactions and lessens the negative effects of abiotic stimuli through the stress transduction pathway and the use of secondary messengers. Through nitric oxide and hydrogen peroxide-based signalling pathways, chitosan treatment activates antioxidant enzymes. Additionally, it stimulates the production of organic acids, carbohydrates, amino acids, and other metabolites needed for osmotic regulation, stress signalling, and other processes. Additionally, it can combine with heavy metals to produce compounds, and it is used in both phytoremediation and biological remediation of polluted soil. Additionally, this is applied topically to a variety of plants as an anti-transpirant agent, which reduces the quantity of water needed while also providing protection from other negative effects. Due of chitosan's exceptional properties and the way the climate is changing, sustainable farming practises are increasingly incorporating it. Our study is a compendium of current chitosan research that emphasises abiotic stress reactions. These responses could be helpful in upcoming initiatives to increase crop productivity.

在农业领域,壳聚糖是一种天然生物聚合物,由甲壳素衍生而来,具有生物刺激剂和诱导剂的双重功能。壳聚糖由甲壳素制成。由于壳聚糖无毒,不会污染环境,而且与生物相容,因此用途广泛。它通过应激传导途径和次级信使的使用,改善生理反应,减轻非生物刺激的负面影响。通过一氧化氮和过氧化氢信号途径,壳聚糖能激活抗氧化酶。此外,它还能刺激有机酸、碳水化合物、氨基酸和其他代谢物的产生,这些代谢物是渗透调节、应激信号和其他过程所必需的。此外,它还能与重金属结合产生化合物,可用于污染土壤的植物修复和生物修复。此外,壳聚糖还可作为一种防汗剂局部应用于各种植物,在减少需水量的同时还能防止其他负面影响。由于壳聚糖的特殊性能和气候的变化方式,可持续农业实践正越来越多地采用壳聚糖。我们的研究是目前壳聚糖研究的汇编,其中强调了非生物压力反应。这些反应可能有助于即将采取的提高作物产量的措施。
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引用次数: 0
Enhancing rangeland weed detection through convolutional neural networks and transfer learning 通过卷积神经网络和迁移学习增强牧场杂草探测能力
Pub Date : 2024-08-01 DOI: 10.1016/j.cropd.2024.100060

The detection of weed species in rangeland environments is a challenging task due to various factors such as dense, variable species vegetation, ocular occlusion, and a wide variety of plant morphology. Most research in weed detection, however, focuses on croplands. This research addresses the need for accurate rangeland weed detection models by leveraging convolutional neural network (CNN) models enhanced with transfer learning applied to the DeepWeeds data set taken in situ in regional North Eastern Australia. It investigates the effectiveness of transfer learning across seven popular models, utilizing data augmentation and fine-tuning. The performance of these models was evaluated using accuracy metrics and compared against each other. The results demonstrated that transfer learning, coupled with fine tuning, could be a viable solution for generating efficient weed plant detection models with lower demands on computational resources and smaller datasets, despite the challenging conditions of rangeland environments. EfficientNetV2B1 had the highest classification accuracy of 94.2 ​%, and lowest training times. Moreover, high levels of accuracy were also achieved using InceptionV3, VGG16, and Densenet121, albeit with a training time penalty. This research provides insights into the performance of CNN models in challenging rangeland environments, demonstrates the potential of using transfer learning to enhance weed detection models, and underscores the significance of model selection in agricultural applications of CNNs.

牧场环境中杂草种类的检测是一项极具挑战性的任务,这是由多种因素造成的,如植被茂密、物种多变、视觉遮挡以及植物形态的多样性。然而,大多数杂草检测研究都集中在耕地上。本研究利用卷积神经网络 (CNN) 模型,并将其应用于在澳大利亚东北部地区实地采集的 DeepWeeds 数据集,从而满足对精确牧场杂草检测模型的需求。该研究利用数据增强和微调,调查了迁移学习在七种流行模型中的有效性。使用准确度指标对这些模型的性能进行了评估,并相互进行了比较。结果表明,尽管牧场环境条件具有挑战性,但迁移学习与微调相结合,可以成为生成高效杂草植物检测模型的可行解决方案,而且对计算资源的要求较低,数据集较小。EfficientNetV2B1 的分类准确率最高,达到 94.2%,训练时间最短。此外,InceptionV3、VGG16 和 Densenet121 也达到了较高的分类准确率,但训练时间较长。这项研究深入探讨了 CNN 模型在具有挑战性的牧场环境中的表现,证明了利用迁移学习增强杂草检测模型的潜力,并强调了在 CNN 的农业应用中模型选择的重要性。
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引用次数: 0
Modeling reveals synergies among root traits for phosphorus acquisition in pearl millet 建模揭示珍珠粟根性状对磷获取的协同作用
Pub Date : 2024-08-01 DOI: 10.1016/j.cropd.2024.100059

Pearl millet is a key food security grain crop in the world's drylands due to its tolerance to abiotic stresses. However, its yield remains low and is negatively impacted by climate change. Root phenes are potential targets to improve crop productivity and resilience to environmental stress. However, the sheer number of combinations resulting from interactions of multiple phenes is a challenge for empirical research. In silico approaches are a plausible alternative to assess the utility of different phene combinations in varying states over diverse environmental contexts. Here, we developed an implementation of the functional-structural plant/soil model – OpenSimRoot, for pearl millet in typical sub-Sahelian soil and environmental conditions. Root architectural, anatomical, and physiological parameters were measured using a popular pearl millet variety (Souna 3) and implemented in the model. The above-ground biomass and root length density predicted by the model were similar to data from field trials. The utility of different root phenes was then evaluated for improved phosphorus uptake and plant growth in P deficient soils. Doubled root hair length and density, shallower root angle (−15°) and doubled long lateral root density were found to improve plant growth by 76 ​%, 33 ​% and 33 ​% respectively under low P conditions. Moreover, these phenes showed synergism when combined in silico and led to optimal biomass production in low P supply conditions that resulted in a 75 ​% loss of biomass in the reference variety. Our study suggests that these phenotypes could be targeted to improve biomass production in pearl millet and consequently its yield in low-P availability conditions.

由于对非生物胁迫的耐受性,珍珠粟是世界干旱地区重要的粮食安全粮食作物。然而,它的产量仍然很低,并受到气候变化的负面影响。根表皮是提高作物产量和抗环境胁迫能力的潜在目标。然而,多种表型相互作用产生的组合数量庞大,这对实证研究是一个挑战。硅学方法是一种可行的替代方法,可用于评估不同表型组合在不同环境背景下的不同状态下的效用。在此,我们开发了一个功能结构植物/土壤模型--OpenSimRoot--的实施方案,该模型适用于典型的亚萨赫勒土壤和环境条件下的珍珠粟。我们使用一个常用的珍珠粟品种(Souna 3)测量了根的结构、解剖和生理参数,并将其应用到模型中。模型预测的地上生物量和根长密度与田间试验数据相似。然后评估了不同根系表型对改善缺磷土壤中磷吸收和植物生长的效用。结果发现,在低钾条件下,加倍的根毛长度和密度、较浅的根角(-15°)和加倍的长侧根密度可分别提高植物生长的 76%、33% 和 33%。此外,这些表型在硅学中结合在一起时显示出协同作用,在低磷供应条件下产生最佳生物量,而参照品种的生物量损失为 75%。我们的研究表明,可以利用这些表型来提高珍珠粟的生物量,从而提高其在低磷供应条件下的产量。
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引用次数: 0
Unveiling the potential: BZR1-mediated resistance to sheath blight and optimized agronomic traits in rice 挖掘潜力:BZR1 介导的水稻抗鞘枯病性和优化的农艺性状
Pub Date : 2024-06-11 DOI: 10.1016/j.cropd.2024.100061
Huan Chen , Tiange Zhou , Xinrui Li , Yuan Hu Xuan
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引用次数: 0
The pentatricopeptide repeat protein TCD6 functions RNA editing and cleavage of ndhA and is required for chloroplast development in early rice seedlings 五叉肽重复蛋白 TCD6 具有 RNA 编辑和切割ndhA 的功能,是早稻幼苗叶绿体发育的必需物质
Pub Date : 2024-06-11 DOI: 10.1016/j.cropd.2024.100063
Yunguang Sun , Licheng Kuang , Jinglin Wang , Mengshuang Gu , Yu Chen , Xiaobiao Pan , Dongzhi Lin , Yanjun Dong

Pentatricopeptide repeat (PPR) proteins compose one of the largest protein families in higher plants and play a role in regulating organellar gene expression. In this study, we discovered that a new rice mutant tcd6 exhibited albino phenotype and aberrant chloroplast before the three-leaf (autotrophic) seedling stage. Through Map-based cloning and complementation tests, it was shown that TCD6 encodes a chloroplast-located PPR protein, with 14 PPR motifs and an atypical DYW-like motif. In addition, the disruption of TCD6 hindered the nuclear-encoded polymerase (NEP)-dependent transcript levels for plastid genes and led to defects in the cleavage and editing of ndhA (encoding NDH subunit) in early tcd6 mutant seedlings. Taken together, our results indicate that TCD6 is indispensable for chloroplast development and involves in RNA editing and cleavage of ndhA during early seedling (autotrophic) growth of rice.

五肽重复蛋白(PPR)是高等植物中最大的蛋白家族之一,在调控细胞器基因表达方面发挥作用。本研究发现,一种新的水稻突变体 tcd6 在三叶(自养)幼苗期之前表现出白化表型和叶绿体异常。通过基于图谱的克隆和互补试验表明,TCD6编码一种叶绿体定位的PPR蛋白,具有14个PPR基序和一个非典型的DYW样基序。此外,TCD6的破坏阻碍了核编码聚合酶(NEP)依赖的质体基因转录本水平,并导致早期ttcd6突变体幼苗中ndhA(编码NDH亚基)的裂解和编辑缺陷。综上所述,我们的研究结果表明,TCD6 对叶绿体的发育是不可或缺的,它参与了水稻早期幼苗(自养)生长过程中的 RNA 编辑和 ndhA 的裂解。
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引用次数: 0
Balancing disease resistance and yield Stability: BGL overexpression in rice for resistance against sheath blight and rice blast 平衡抗病性与产量稳定性:在水稻中过表达 BGL 以抵抗鞘枯病和稻瘟病
Pub Date : 2024-05-01 DOI: 10.1016/j.cropd.2024.100062
Jingmiao Liu , Yuan Hu Xuan , Tiange Zhou

Diseases in rice is a major factor that affects both the yield and quality of the crop. ​The central focus of our study is the investigation of overexpression of BGLs in rice and its remarkable impact on resistance against two prevalent and destructive diseases in rice, namely, sheath blight and rice blast. The overexpression of BGLs exhibited resistance against both these diseases, addressing a critical concern in rice production. Additionally, despite increased resistance, rice yields remained stable, indicating that BGL overexpression may offer a practical solution for integrated disease management without compromising productivity.

水稻病害是影响作物产量和质量的一个主要因素。我们的研究重点是调查 BGLs 在水稻中的过表达及其对水稻中两种流行的毁灭性病害(即鞘枯病和稻瘟病)的显著抗性影响。BGLs 的过表达表现出了对这两种病害的抗性,解决了水稻生产中的一个关键问题。此外,尽管抗性增强了,但水稻产量仍然保持稳定,这表明 BGL 的过表达可为综合病害管理提供一种实用的解决方案,同时又不影响产量。
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引用次数: 0
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Crop Design
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