Pub Date : 2024-02-01DOI: 10.1016/j.imj.2024.100088
R. Sagar, Siva Raghavendhar, Vineet Jain, Naushad Khan, A. Chandele, Ashok Kumar Patel, M. Kaja, Pratima Ray, Neera Kapoor
{"title":"Viremia and clinical manifestations in acute febrile patients of Chikungunya infection during the 2016 CHIKV outbreak in Delhi, India","authors":"R. Sagar, Siva Raghavendhar, Vineet Jain, Naushad Khan, A. Chandele, Ashok Kumar Patel, M. Kaja, Pratima Ray, Neera Kapoor","doi":"10.1016/j.imj.2024.100088","DOIUrl":"https://doi.org/10.1016/j.imj.2024.100088","url":null,"abstract":"","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"246 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139828928","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-16DOI: 10.1016/j.imj.2023.12.001
Dominic A. Haigh , Dillan Mistry , Hamzah Z. Farooq , Katherine M.B. Ajdukiewicz
A 68-year-old-gentleman presented with left hip pain, night sweats, fatigue, and weight loss. He had previously experienced pain with white discharge until he underwent an arthroscopic washout and reduction. The left lower limb was shortened and wasted with limited hip movements. He had recently travelled to Zambia, his country of origin. Imaging demonstrated a large mass with chronic erosions of the acetabulum and femoral head. Synovial biopsy grew Mycobacterium tuberculosis, which was treated with rifampicin, isoniazid, pyrazinamide, and ethambutol for 2 months then 4 months of rifampicin and isoniazid. Whole genome sequencing indicated full sensitivity. Complex reconstructive surgery is scheduled, with a custom femoral head and acetabulum. This case illustrates the importance of considering tuberculosis in patients with erosive joint pathology and a multidisciplinary approach as delayed diagnosis results in high morbidity. Prompt diagnosis using newer modalities such as whole genome sequencing on synovial fluid can enable timely treatment.
{"title":"A major pain in the hip - Destruction of the left acetabulum and femoral head secondary to Tuberculosis: A case report and review of the literature","authors":"Dominic A. Haigh , Dillan Mistry , Hamzah Z. Farooq , Katherine M.B. Ajdukiewicz","doi":"10.1016/j.imj.2023.12.001","DOIUrl":"10.1016/j.imj.2023.12.001","url":null,"abstract":"<div><p>A 68-year-old-gentleman presented with left hip pain, night sweats, fatigue, and weight loss. He had previously experienced pain with white discharge until he underwent an arthroscopic washout and reduction. The left lower limb was shortened and wasted with limited hip movements. He had recently travelled to Zambia, his country of origin. Imaging demonstrated a large mass with chronic erosions of the acetabulum and femoral head. Synovial biopsy grew <em>Mycobacterium tuberculosis</em>, which was treated with rifampicin, isoniazid, pyrazinamide, and ethambutol for 2 months then 4 months of rifampicin and isoniazid. Whole genome sequencing indicated full sensitivity. Complex reconstructive surgery is scheduled, with a custom femoral head and acetabulum. This case illustrates the importance of considering tuberculosis in patients with erosive joint pathology and a multidisciplinary approach as delayed diagnosis results in high morbidity. Prompt diagnosis using newer modalities such as whole genome sequencing on synovial fluid can enable timely treatment.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"3 1","pages":"Article 100086"},"PeriodicalIF":0.0,"publicationDate":"2023-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X23000709/pdfft?md5=6444f2f536ae594732452f47b7d685b1&pid=1-s2.0-S2772431X23000709-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139025600","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-01DOI: 10.1016/j.imj.2023.11.007
Arslan Habib , Nadiya Habib , Khalid Mahmood Anjum , Riffat Iqbal , Zeeshan Ashraf , Muhammad Usman Taj , Muhammad Asim , Kanwal Javid , Faezeh Idoon , Saeid Dashti , Cassio Rocha Medeiros , Ana Pavla Almeida Diniz Gurgel , Henrique Douglas Melo Coutinho
Background
Hepatitis C, caused by the Hepatitis C Virus (HCV), is the second most common form of viral hepatitis. The geographical distribution of HCV genotypes can be quite complex, making it challenging to ascertain the most prevalent genotype in a specific area.
Methods
To address this, a review was conducted to determine the prevalence of HCV genotypes across various provinces and as a whole in Pakistan. The scientific literature regarding the prevalence, distribution, genotyping, and epidemiology of HCV was gathered from published articles spanning the years 1996–2020.
Results
Genotype 1 accounted for 5.1% of the patients, with its predominant subtype being 1a at 4.38%. The frequencies of its other subtypes, 1b and 1c, were observed to be 1.0% and 0.31% respectively. Genotype 2 had a frequency of 2.66%, with the most widely distributed subtype being 2a at 2.11% of the patients. Its other subtypes, 2b and 2c, had frequencies of 0.17% and 0.36% respectively. The most prevalent genotype among all isolates was 3 (65.35%), with the most frequent subtype being 3a (55.15%), followed by 3b (7.18%). The prevalence of genotypes 4, 5, and 6 were scarce in Pakistan, with frequencies of 0.97%, 0.08%, and 0.32% respectively. The prevalence of untypeable and mixed genotypes was 21.34% and 3.53% respectively. Estimating genotypes proves to be a productive method in assisting with the duration and selection of antiviral treatment. Different HCV genotypes can exhibit variations in their response to specific antiviral treatments. Different genotypes may have distinct natural histories, including variations in disease progression and severity. Some genotypes may lead to more rapid liver damage, while others progress more slowly.
Conclusions
This information can guide screening and testing strategies, helping to identify individuals at higher risk of developing severe complications. Studying the distribution of HCV genotypes in a population can provide valuable insights into the transmission dynamics of the virus.
{"title":"Molecular evolution, virology and spatial distribution of HCV genotypes in Pakistan: A meta-analysis","authors":"Arslan Habib , Nadiya Habib , Khalid Mahmood Anjum , Riffat Iqbal , Zeeshan Ashraf , Muhammad Usman Taj , Muhammad Asim , Kanwal Javid , Faezeh Idoon , Saeid Dashti , Cassio Rocha Medeiros , Ana Pavla Almeida Diniz Gurgel , Henrique Douglas Melo Coutinho","doi":"10.1016/j.imj.2023.11.007","DOIUrl":"https://doi.org/10.1016/j.imj.2023.11.007","url":null,"abstract":"<div><h3>Background</h3><p>Hepatitis C, caused by the Hepatitis C Virus (HCV), is the second most common form of viral hepatitis. The geographical distribution of HCV genotypes can be quite complex, making it challenging to ascertain the most prevalent genotype in a specific area.</p></div><div><h3>Methods</h3><p>To address this, a review was conducted to determine the prevalence of HCV genotypes across various provinces and as a whole in Pakistan. The scientific literature regarding the prevalence, distribution, genotyping, and epidemiology of HCV was gathered from published articles spanning the years 1996–2020.</p></div><div><h3>Results</h3><p>Genotype 1 accounted for 5.1% of the patients, with its predominant subtype being 1a at 4.38%. The frequencies of its other subtypes, 1b and 1c, were observed to be 1.0% and 0.31% respectively. Genotype 2 had a frequency of 2.66%, with the most widely distributed subtype being 2a at 2.11% of the patients. Its other subtypes, 2b and 2c, had frequencies of 0.17% and 0.36% respectively. The most prevalent genotype among all isolates was 3 (65.35%), with the most frequent subtype being 3a (55.15%), followed by 3b (7.18%). The prevalence of genotypes 4, 5, and 6 were scarce in Pakistan, with frequencies of 0.97%, 0.08%, and 0.32% respectively. The prevalence of untypeable and mixed genotypes was 21.34% and 3.53% respectively. Estimating genotypes proves to be a productive method in assisting with the duration and selection of antiviral treatment. Different HCV genotypes can exhibit variations in their response to specific antiviral treatments. Different genotypes may have distinct natural histories, including variations in disease progression and severity. Some genotypes may lead to more rapid liver damage, while others progress more slowly.</p></div><div><h3>Conclusions</h3><p>This information can guide screening and testing strategies, helping to identify individuals at higher risk of developing severe complications. Studying the distribution of HCV genotypes in a population can provide valuable insights into the transmission dynamics of the virus.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"2 4","pages":"Pages 324-333"},"PeriodicalIF":0.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X2300062X/pdfft?md5=57a8370dce8f385f0f8f4acbc58eb8e7&pid=1-s2.0-S2772431X2300062X-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138739238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-01DOI: 10.1016/j.imj.2023.11.002
Lihua Qi , Weihong Fan , Jing Li , Hongfei Cui , Jianxia Xu , Dongmei Gu , Jiaojiao Meng , Jie Liu
Here we describe the first case of abscess infection caused by Nocardia beijingensis in China. The patient was immunocompetent but suffered from postoperative abscess for 6 years. This study highlights the necessity of long-term infected foci to be thoroughly examined to identify the pathogen, as well as the importance of accurate Nocardia identification and antimicrobial susceptibility tests for understanding the pathogen's epidemiology, clinical significance, and treatment strategy.
{"title":"Persistent Nocardia beijingensis infection in a patient with postoperative abscess and misuse of antibiotics in China","authors":"Lihua Qi , Weihong Fan , Jing Li , Hongfei Cui , Jianxia Xu , Dongmei Gu , Jiaojiao Meng , Jie Liu","doi":"10.1016/j.imj.2023.11.002","DOIUrl":"10.1016/j.imj.2023.11.002","url":null,"abstract":"<div><p>Here we describe the first case of abscess infection caused by <em>Nocardia beijingensis</em> in China. The patient was immunocompetent but suffered from postoperative abscess for 6 years. This study highlights the necessity of long-term infected foci to be thoroughly examined to identify the pathogen, as well as the importance of accurate <em>Nocardia</em> identification and antimicrobial susceptibility tests for understanding the pathogen's epidemiology, clinical significance, and treatment strategy.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"2 4","pages":"Pages 343-348"},"PeriodicalIF":0.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X23000576/pdfft?md5=ee13cccdedfd564cc3be09b140f6ecbd&pid=1-s2.0-S2772431X23000576-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135614319","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-01DOI: 10.1016/j.imj.2023.09.003
Yuan Bian , Qi Han , Yue Zheng , Yu Yao , Xinhui Fan , Ruijuan Lv , Jiaojiao Pang , Feng Xu , Yuguo Chen
Background
Some COVID-19 patients deteriorate to severe cases with relatively higher case-fatality rates, which increases the medical burden. This necessitates identification of patients at risk of severe disease. Early assessment plays a crucial role in identifying patients at risk of severe disease. This study is to assess the effectiveness of SUPER score as a predictor of severe COVID-19 cases.
Methods
We consecutively enrolled COVID-19 patients admitted to a comprehensive medical center in Wuhan, China, and recorded clinical characteristics and laboratory indexes. The SUPER score was calculated using parameters including oxygen saturation, urine volume, pulse, emotional state, and respiratory rate. In addition, the area under the receiver operating characteristic curve (AUC), specificity, and sensitivity of the SUPER score for the diagnosis of severe COVID-19 were calculated and compared with the National Early Warning Score 2 (NEWS2).
Results
The SUPER score at admission, with a threshold of 4, exhibited good predictive performance for early identification of severe COVID-19 cases, yielding an AUC of 0.985 (95% confidence interval [CI] 0.897–1.000), sensitivity of 1.00 (95% CI 0.715–1.000), and specificity of 0.92 (95% CI 0.775–0.982), similar to NEWS2 (AUC 0.984; 95% CI 0.895–1.000, sensitivity 0.91; 95% CI 0.587–0.998, specificity 0.97; 95% CI 0.858–0.999). Compared with patients with a SUPER score<4, patients in the high-risk group exhibited lower lymphocyte counts, interleukin-2, interleukin-4 and higher fibrinogen, C-reactive protein, aspartate aminotransferase, and lactate dehydrogenase levels.
Conclusions
In conclusion, the SUPER score demonstrated equivalent accuracy to the NEWS2 score in predicting severe COVID-19. Its application in prognostic assessment therefore offers an effective early warning system for critical management and facilitating efficient allocation of health resources.
背景一些 COVID-19 患者病情恶化为重症病例,病死率相对较高,这增加了医疗负担。这就需要识别有重症风险的患者。早期评估在识别有严重疾病风险的患者方面起着至关重要的作用。本研究旨在评估 SUPER 评分作为 COVID-19 重症病例预测指标的有效性。使用血氧饱和度、尿量、脉搏、情绪状态和呼吸频率等参数计算 SUPER 评分。此外,还计算了 SUPER 评分诊断重症 COVID-19 的接收器操作特征曲线下面积(AUC)、特异性和灵敏度,并与国家早期预警评分 2(NEWS2)进行了比较。985(95% 置信区间 [CI] 0.897-1.000),灵敏度为 1.00(95% CI 0.715-1.000),特异度为 0.92(95% CI 0.775-0.982),与 NEWS2 相似(AUC 0.984; 95% CI 0.895-1.000,灵敏度 0.91; 95% CI 0.587-0.998,特异度 0.97; 95% CI 0.858-0.999)。与 SUPER 评分<4 的患者相比,高危组患者的淋巴细胞计数、白细胞介素-2 和白细胞介素-4 水平较低,纤维蛋白原、C 反应蛋白、天冬氨酸氨基转移酶和乳酸脱氢酶水平较高。因此,将其应用于预后评估可为危重症管理提供有效的早期预警系统,并促进医疗资源的有效分配。
{"title":"SUPER Score Contributes to Warning and Management in Early-Stage COVID-19","authors":"Yuan Bian , Qi Han , Yue Zheng , Yu Yao , Xinhui Fan , Ruijuan Lv , Jiaojiao Pang , Feng Xu , Yuguo Chen","doi":"10.1016/j.imj.2023.09.003","DOIUrl":"10.1016/j.imj.2023.09.003","url":null,"abstract":"<div><h3>Background</h3><p>Some COVID-19 patients deteriorate to severe cases with relatively higher case-fatality rates, which increases the medical burden. This necessitates identification of patients at risk of severe disease. Early assessment plays a crucial role in identifying patients at risk of severe disease. This study is to assess the effectiveness of SUPER score as a predictor of severe COVID-19 cases.</p></div><div><h3>Methods</h3><p>We consecutively enrolled COVID-19 patients admitted to a comprehensive medical center in Wuhan, China, and recorded clinical characteristics and laboratory indexes. The SUPER score was calculated using parameters including oxygen saturation, urine volume, pulse, emotional state, and respiratory rate. In addition, the area under the receiver operating characteristic curve (AUC), specificity, and sensitivity of the SUPER score for the diagnosis of severe COVID-19 were calculated and compared with the National Early Warning Score 2 (NEWS2).</p></div><div><h3>Results</h3><p>The SUPER score at admission, with a threshold of 4, exhibited good predictive performance for early identification of severe COVID-19 cases, yielding an AUC of 0.985 (95% confidence interval [CI] 0.897–1.000), sensitivity of 1.00 (95% CI 0.715–1.000), and specificity of 0.92 (95% CI 0.775–0.982), similar to NEWS2 (AUC 0.984; 95% CI 0.895–1.000, sensitivity 0.91; 95% CI 0.587–0.998, specificity 0.97; 95% CI 0.858–0.999). Compared with patients with a SUPER score<4, patients in the high-risk group exhibited lower lymphocyte counts, interleukin-2, interleukin-4 and higher fibrinogen, C-reactive protein, aspartate aminotransferase, and lactate dehydrogenase levels.</p></div><div><h3>Conclusions</h3><p>In conclusion, the SUPER score demonstrated equivalent accuracy to the NEWS2 score in predicting severe COVID-19. Its application in prognostic assessment therefore offers an effective early warning system for critical management and facilitating efficient allocation of health resources.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"2 4","pages":"Pages 308-314"},"PeriodicalIF":0.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X23000540/pdfft?md5=f8f981ef0eb3e49bfab32ba43008cd11&pid=1-s2.0-S2772431X23000540-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135922285","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-01DOI: 10.1016/j.imj.2023.09.002
Nannan Xu , Hui Liu , Chunmei Qu , Sai Wen , Wenlu Zou , Caiyun Chang , Gang Wang
China is not considered as an endemic area of Rickettsia conorii, so there is no routine clinical way to diagnose this infection. This study aims to determine whether 2 febrile patients who had a tick bite in East China were indeed infected with R. conorii. The citrate synthase gene (gltA) was amplified with universal rickettsial primers by real-time fluorescent PCR from the patients’ blood samples. Nested PCR was used to amplify the outer membrane protein A gene (ompA) for positive specimens. PCR products were further identified and analyzed through nucleic acid sequencing. Positive amplification of the gltA and ompA genes was found in both patients. The nucleotide sequences (303 bp) of the ompA gene of the 2 patients had high homology (99%) with the R. conorii Indian tick typhus strain in GenBank. A more than 4-fold increase in IgG against R. conorii provided supportive evidence of SFG Rickettsia infection. And the rapid recovery after doxycycline treatment also supported a rickettsial cause for the disease. Physicians in East China should be aware of human infections with R. conorii. PCR-based diagnostic methods offer a rapid and precise way to diagnose rickettsiosis, improving patient identification and management.
中国并不是立克次体的流行区,因此没有常规的临床诊断方法。本研究旨在确定在华东地区被蜱虫叮咬的两名发热患者是否真的感染了康氏立克次体。研究人员使用通用立克次体引物,通过实时荧光定量PCR技术扩增了患者血样中的柠檬酸合成酶基因(gltA)。对阳性样本采用巢式 PCR 扩增外膜蛋白 A 基因(ombA)。通过核酸测序对 PCR 产物进行进一步鉴定和分析。两名患者的 gltA 和 ompA 基因均扩增阳性。两名患者的 ompA 基因核苷酸序列(303 bp)与 GenBank 中的 R. conorii 印度蜱斑疹伤寒菌株具有高度同源性(99%)。针对R. conorii的IgG增加了4倍多,为SFG立克次体感染提供了支持性证据。多西环素治疗后的迅速恢复也支持了立克次氏体感染的病因。华东地区的医生应警惕人类感染立克次体。基于PCR的诊断方法为立克次体病的诊断提供了一种快速、精确的途径,可提高患者的识别和管理水平。
{"title":"The presence of foci of Rickettsia conorii infection in China","authors":"Nannan Xu , Hui Liu , Chunmei Qu , Sai Wen , Wenlu Zou , Caiyun Chang , Gang Wang","doi":"10.1016/j.imj.2023.09.002","DOIUrl":"10.1016/j.imj.2023.09.002","url":null,"abstract":"<div><p>China is not considered as an endemic area of <em>Rickettsia conorii</em>, so there is no routine clinical way to diagnose this infection. This study aims to determine whether 2 febrile patients who had a tick bite in East China were indeed infected with <em>R. conorii.</em> The citrate synthase gene (<em>gltA</em>) was amplified with universal rickettsial primers by real-time fluorescent PCR from the patients’ blood samples. Nested PCR was used to amplify the outer membrane protein A gene (<em>ompA</em>) for positive specimens. PCR products were further identified and analyzed through nucleic acid sequencing. Positive amplification of the <em>gltA</em> and <em>ompA</em> genes was found in both patients. The nucleotide sequences (303 bp) of the <em>ompA</em> gene of the 2 patients had high homology (99%) with the <em>R. conorii</em> Indian tick typhus strain in GenBank. A more than 4-fold increase in IgG against <em>R. conorii</em> provided supportive evidence of SFG Rickettsia infection. And the rapid recovery after doxycycline treatment also supported a rickettsial cause for the disease. Physicians in East China should be aware of human infections with <em>R. conorii.</em> PCR-based diagnostic methods offer a rapid and precise way to diagnose rickettsiosis, improving patient identification and management.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"2 4","pages":"Pages 334-337"},"PeriodicalIF":0.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X2300045X/pdfft?md5=9f6384bf1674c07115256aad5bee51f4&pid=1-s2.0-S2772431X2300045X-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135348592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-01DOI: 10.1016/j.imj.2023.08.005
Md. Aminul Islam
The severe acute respiratory syndrome coronavirus disease 2 instigated by coronavirus disease of 2019 (COVID-19) has delivered an unfathomable obstruction that has touched all sectors worldwide. Despite new vaccine technologies and mass administration of booster doses, the virus persists, and unknown the ending of the pandemic for new variants and sub-variants. Moreover, whether leaning on home medications or using plant extracts is sufficient often to combat the virus has generated tremendous interest in the scientific fraternity. Different databases including PubMed, Scopus, Web of Science, and Google Scholar used to find published articles linked with related topics. Currently, COVID-19 third and fourth shots of vaccines are progressively administered worldwide, where some countries trail others by a significant margin. Many proteins related to viral activity have changed, possibly boosting the virus infectivity and making antibodies ineffective. This study will reminisce the viral genome, associated pathways for viral protein functions, variants, and their mutations. The current, comprehensive review will also provide information on vaccine technologies developed by several biotech companies and the efficacy of their doses, costs including boosters on a mass level. As no vaccine is working to protect fully against all the variants, the new proactive vaccine research needs to be conducted based on all variants, their sub-lineage, and mutations.
由 2019 年冠状病毒病(COVID-19)引发的严重急性呼吸系统综合征冠状病毒病 2 给全球各行各业带来了深不可测的阻碍。尽管采用了新的疫苗技术,并大规模注射了加强剂,但病毒依然存在,新变种和亚变种的大流行能否结束也不得而知。此外,依靠家庭用药或使用植物提取物是否足以对抗病毒也引起了科学界的极大兴趣。不同的数据库包括 PubMed、Scopus、Web of Science 和 Google Scholar,用于查找与相关主题相关的已发表文章。目前,COVID-19 第三针和第四针疫苗已在全球范围内逐步接种,但一些国家的接种率远远落后于其他国家。许多与病毒活性有关的蛋白质发生了变化,可能会增强病毒的感染力,使抗体失效。本研究将回顾病毒基因组、病毒蛋白功能的相关途径、变体及其突变。目前的全面审查还将提供有关几家生物技术公司开发的疫苗技术及其剂量的有效性、成本,包括大规模的增强剂的信息。由于没有一种疫苗能够完全预防所有变种,因此需要根据所有变种、其亚系和变异情况开展新的前瞻性疫苗研究。
{"title":"A review of SARS-CoV-2 variants and vaccines: Viral properties, mutations, vaccine efficacy, and safety","authors":"Md. Aminul Islam","doi":"10.1016/j.imj.2023.08.005","DOIUrl":"10.1016/j.imj.2023.08.005","url":null,"abstract":"<div><p>The severe acute respiratory syndrome coronavirus disease 2 instigated by coronavirus disease of 2019 (COVID-19) has delivered an unfathomable obstruction that has touched all sectors worldwide. Despite new vaccine technologies and mass administration of booster doses, the virus persists, and unknown the ending of the pandemic for new variants and sub-variants. Moreover, whether leaning on home medications or using plant extracts is sufficient often to combat the virus has generated tremendous interest in the scientific fraternity. Different databases including PubMed, Scopus, Web of Science, and Google Scholar used to find published articles linked with related topics. Currently, COVID-19 third and fourth shots of vaccines are progressively administered worldwide, where some countries trail others by a significant margin. Many proteins related to viral activity have changed, possibly boosting the virus infectivity and making antibodies ineffective. This study will reminisce the viral genome, associated pathways for viral protein functions, variants, and their mutations. The current, comprehensive review will also provide information on vaccine technologies developed by several biotech companies and the efficacy of their doses, costs including boosters on a mass level. As no vaccine is working to protect fully against all the variants, the new proactive vaccine research needs to be conducted based on all variants, their sub-lineage, and mutations.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"2 4","pages":"Pages 247-261"},"PeriodicalIF":0.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X23000448/pdfft?md5=37b73576b07e4da7572a883b7b19b2d4&pid=1-s2.0-S2772431X23000448-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135890163","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The largest monkeypox virus (MPXV) outbreak of the 21st century occurred in 2022, which caused epidemics in many countries. According to WHO, physical contact with infected persons, contaminated surfaces, or affected animals might be a source of this virus transmission. A febrile sickness including few symptoms found in MPX disease. Skin rash, lesions, fever, headache, fatigue, and muscle aches symptoms were observed commonly for this disease. Animal and in vitro, studies have shown that the antiviral medications cidofovir and brincidofovir are effective against MPXV. The first-generation vaccinia virus vaccine was developed in 1960, and it helped to protect against MPXV with its side effects. A second-generation vaccination with limitations was launched in 2000. However, the CDC advised vaccinations for risk groups in endemic countries, including positive patients and hospital employees. The JYNNEOS vaccine, administered in 2 doses, also provides protection from MPX. This article presents concisely the most recent findings regarding epidemiology, genomic transmission, signs and symptoms, pathogenesis, diagnosis, and therapeutic interventions for MPXV, which may be helpful to researchers and practitioners. WHO declared that MPX was no longer a global health emergency due to its declining case rate, and a number of countries have reported new incidences. Further research-based investigations must be carried out based on the 2022 outbreak.
{"title":"Monkeypox virus (MPXV): A Brief account of global spread, epidemiology, virology, clinical features, pathogenesis, and therapeutic interventions","authors":"Md Aminul Islam , Jubayer Mumin , Md Masudul Haque , Md. Azizul Haque , Ahrar Khan , Prosun Bhattacharya , Md Atiqul Haque","doi":"10.1016/j.imj.2023.11.001","DOIUrl":"10.1016/j.imj.2023.11.001","url":null,"abstract":"<div><p>The largest monkeypox virus (MPXV) outbreak of the 21st century occurred in 2022, which caused epidemics in many countries. According to WHO, physical contact with infected persons, contaminated surfaces, or affected animals might be a source of this virus transmission. A febrile sickness including few symptoms found in MPX disease. Skin rash, lesions, fever, headache, fatigue, and muscle aches symptoms were observed commonly for this disease. Animal and in vitro, studies have shown that the antiviral medications cidofovir and brincidofovir are effective against MPXV. The first-generation vaccinia virus vaccine was developed in 1960, and it helped to protect against MPXV with its side effects. A second-generation vaccination with limitations was launched in 2000. However, the CDC advised vaccinations for risk groups in endemic countries, including positive patients and hospital employees. The JYNNEOS vaccine, administered in 2 doses, also provides protection from MPX. This article presents concisely the most recent findings regarding epidemiology, genomic transmission, signs and symptoms, pathogenesis, diagnosis, and therapeutic interventions for MPXV, which may be helpful to researchers and practitioners. WHO declared that MPX was no longer a global health emergency due to its declining case rate, and a number of countries have reported new incidences. Further research-based investigations must be carried out based on the 2022 outbreak.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"2 4","pages":"Pages 262-272"},"PeriodicalIF":0.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X23000564/pdfft?md5=dc2676d1c5c5c0f25465494fea43ec10&pid=1-s2.0-S2772431X23000564-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135455092","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-01DOI: 10.1016/j.imj.2023.11.006
Amruta A. Joshi, Ravindra H. Patil
Staphylococcus aureus is an aerobic Gram-positive spherical bacterium known to cause a broad range of infections worldwide. It is a major cause of infective skin and soft infections and severe and life-threatening conditions, such as pneumonia, bloodstream infections, and endocarditis. The emergence of drug-resistant strains of S aureus, particularly methicillin-resistant S aureus (MRSA), has become a significant concern in the healthcare community. Antibiotic-resistant S aureus is commonly acquired in hospitals and long-term care facilities. It often affects patients with weakened immune systems, those undergoing invasive medical procedures, or those who have been hospitalized for extended periods. In the US, S aureus is known to cause potentially fatal illnesses, such as toxic shock syndrome (TSS) and acute-onset toxic shock syndrome (TSS), which are characterized by fever and hypotension. It develops resistance to antibiotics through several mechanisms, such as the production of enzymes that inactivate antibiotics, target site modification, efflux pumps, and plasmid-mediated resistance. Therefore, preventing the spread of drug-resistant S aureus is needed, and there is an urgent need to explore novel approaches in the development of anti-staphylococcal agents. This article reviews the principal infections caused by S aureus, major virulence factors, mechanisms of resistance development, and nanotechnology-based solutions for the control of drug-resistant S aureus.
{"title":"Metal nanoparticles as inhibitors of enzymes and toxins of multidrug-resistant Staphylococcus aureus","authors":"Amruta A. Joshi, Ravindra H. Patil","doi":"10.1016/j.imj.2023.11.006","DOIUrl":"https://doi.org/10.1016/j.imj.2023.11.006","url":null,"abstract":"<div><p><em>Staphylococcus aureus</em> is an aerobic Gram-positive spherical bacterium known to cause a broad range of infections worldwide. It is a major cause of infective skin and soft infections and severe and life-threatening conditions, such as pneumonia, bloodstream infections, and endocarditis. The emergence of drug-resistant strains of <em>S aureus</em>, particularly methicillin-resistant <em>S aureus</em> (MRSA), has become a significant concern in the healthcare community. Antibiotic-resistant <em>S aureus</em> is commonly acquired in hospitals and long-term care facilities. It often affects patients with weakened immune systems, those undergoing invasive medical procedures, or those who have been hospitalized for extended periods. In the US, <em>S aureus</em> is known to cause potentially fatal illnesses, such as toxic shock syndrome (TSS) and acute-onset toxic shock syndrome (TSS), which are characterized by fever and hypotension. It develops resistance to antibiotics through several mechanisms, such as the production of enzymes that inactivate antibiotics, target site modification, efflux pumps, and plasmid-mediated resistance. Therefore, preventing the spread of drug-resistant <em>S aureus</em> is needed, and there is an urgent need to explore novel approaches in the development of anti-<em>staphylococcal</em> agents. This article reviews the principal infections caused by <em>S aureus,</em> major virulence factors, mechanisms of resistance development, and nanotechnology-based solutions for the control of drug-resistant <em>S aureus</em>.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"2 4","pages":"Pages 294-307"},"PeriodicalIF":0.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X23000618/pdfft?md5=05d120ded6f685c00dd65fb127a51b4b&pid=1-s2.0-S2772431X23000618-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138739236","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-01DOI: 10.1016/j.imj.2023.11.005
Jiangping Ren , Feng Ling , Ying Liu , Jimin Sun
Background
Chikungunya is emerging and reemerging word-widely in the past decades. It is non-endemic in Zhejiang Province, Southeast China. Aedes albopictus, one of major vectors of chikungunya, is widely-distribution in Zhejiang, and autochthonous transmission is possible after introducing chikungunya virus.
Methods
Retrospectively collected the epidemiological, clinical and genetic data of chikungunya and conducted the descriptive analysis and gene sequence analysis.
Results
From 2008 to 2022, 29 chikungunya cases, including 26 overseas imported and 3 local cases, were reported and no cases died of chikungunya. More than half of the imported cases (53.85%) were from Southeast Asia. Seasonal peak of the imported cases was noted between August and September, and 42.31% cases onset in those 2 months. Eight prefecture-level cities and 16 counties reported cases during the study period, with Jinghua (27.59%) and Hangzhou (24.14%) reporting the largest number of cases. The 3 local cases were all reported in Qujiang, Quzhou in 2017. For imported cases, the male-female gender ratio was 2.71:1, 20–30 years old cases (46.15%) and commercial service (42.31%) accounted for the highest proportion. Clinically, fever (100%), fatigue (94.44%), arthralgia (79.17%), headache (71.43%) and erythra (65.22%) were the most common reported symptoms. Eight whole-genome sequences were obtained and belonged to East/Central/South African (ECSA) or Asian genotype.
Conclusions
With the change of immigration policy, the surveillance of chikungunya should be strengthened and the ability of the case discovery and diagnosis should be improved in Zhejiang in the post-COVID-19 era.
{"title":"Chikungunya in Zhejiang Province, Southeast China","authors":"Jiangping Ren , Feng Ling , Ying Liu , Jimin Sun","doi":"10.1016/j.imj.2023.11.005","DOIUrl":"https://doi.org/10.1016/j.imj.2023.11.005","url":null,"abstract":"<div><h3>Background</h3><p>Chikungunya is emerging and reemerging word-widely in the past decades. It is non-endemic in Zhejiang Province, Southeast China. Aedes albopictus, one of major vectors of chikungunya, is widely-distribution in Zhejiang, and autochthonous transmission is possible after introducing chikungunya virus.</p></div><div><h3>Methods</h3><p>Retrospectively collected the epidemiological, clinical and genetic data of chikungunya and conducted the descriptive analysis and gene sequence analysis.</p></div><div><h3>Results</h3><p>From 2008 to 2022, 29 chikungunya cases, including 26 overseas imported and 3 local cases, were reported and no cases died of chikungunya. More than half of the imported cases (53.85%) were from Southeast Asia. Seasonal peak of the imported cases was noted between August and September, and 42.31% cases onset in those 2 months. Eight prefecture-level cities and 16 counties reported cases during the study period, with Jinghua (27.59%) and Hangzhou (24.14%) reporting the largest number of cases. The 3 local cases were all reported in Qujiang, Quzhou in 2017. For imported cases, the male-female gender ratio was 2.71:1, 20–30 years old cases (46.15%) and commercial service (42.31%) accounted for the highest proportion. Clinically, fever (100%), fatigue (94.44%), arthralgia (79.17%), headache (71.43%) and erythra (65.22%) were the most common reported symptoms. Eight whole-genome sequences were obtained and belonged to East/Central/South African (ECSA) or Asian genotype.</p></div><div><h3>Conclusions</h3><p>With the change of immigration policy, the surveillance of chikungunya should be strengthened and the ability of the case discovery and diagnosis should be improved in Zhejiang in the post-COVID-19 era.</p></div>","PeriodicalId":100667,"journal":{"name":"Infectious Medicine","volume":"2 4","pages":"Pages 315-323"},"PeriodicalIF":0.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772431X23000606/pdfft?md5=292246ca3cd6d34e0030b537eec7a5e4&pid=1-s2.0-S2772431X23000606-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138739237","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}