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Genomics-based tools for drug discovery and development: From network maps to efficacy prediction 基于基因组学的药物发现和开发工具:从网络地图到疗效预测
Pub Date : 2023-11-01 DOI: 10.1016/j.jhip.2023.11.001
Junhao Fang , Qi Chen , Guoyu Wu

Computing technology plays a crucial role in the field of drug discovery and development. With the rapid development of genomics and the improvement of databases, the application of genomics-based tools is important in drug discovery and development. These tools can deeply explore the information in gene expression profile databases, revealing the connections and interactions between drugs, diseases and genes, and providing strong support for drug discovery and development. This paper introduces various significant genomics-based tools for drug discovery and development, discusses the advantages of deep learning and artificial intelligence in utilizing large-scale genomic data, and reveals the development trends and future prospects of drug genomics tools. The continuous progress of these tools will provide more accurate and efficient support for drug discovery and development.

计算机技术在药物发现和开发领域起着至关重要的作用。随着基因组学的快速发展和数据库的完善,基于基因组学的工具在药物发现和开发中的应用具有重要意义。这些工具可以深入挖掘基因表达谱数据库中的信息,揭示药物、疾病和基因之间的联系和相互作用,为药物的发现和开发提供有力的支持。本文介绍了几种重要的基于基因组学的药物发现和开发工具,讨论了深度学习和人工智能在利用大规模基因组数据方面的优势,并揭示了药物基因组学工具的发展趋势和未来前景。这些工具的不断进步将为药物发现和开发提供更加准确和高效的支持。
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引用次数: 0
Pharmacognostical study of Croton Crassifolius Geisel 巴豆的药理研究
Pub Date : 2023-11-01 DOI: 10.1016/j.jhip.2023.11.005
Zhuojun Huang, Wenfeng Weng, Shengguo Ji

Objectives

Croton Crassifolius Geisel of the genus Croton in the Euphorbia family is a widely distributed herb in South China. It has medicinal value for the treatment of a sore throat, soothing tendons, activating collateral, and treating rheumatoid arthritis. Although it has been traditionally used in Chinese medicine, there has been no systematic study on its identification and classification of the authenticity of this plant. The purpose of this study is to provide a scientific basis for the identification and classification of the authenticity of this plant.

Methods

An accurate and effective identification system was established through morphological characteristics, microscopic characteristics, physical and chemical parameter determination, phytochemical screening, and DNA barcoding analysis.

Results

The physicochemical results revealed that this plant might contain flavonoids, cardiac glycosides, and alkaloids. The ITS locus in the nuclear genome in the chloroplast genome was screened and evaluated and Neighbor-Joining phylogenetic trees can effectively identify Croton Crassifolius Geisel to a certain extent.

Conclusion

This research contributed to the development of species identification.

目的大戟科巴豆属植物巴豆是一种广泛分布于中国南方的草本植物。它具有治疗咽喉肿痛、舒筋活络、治疗风湿性关节炎的药用价值。虽然它一直是传统的中药,但对其真伪的鉴定和分类还没有系统的研究。方法通过形态特征、显微特征、理化指标测定、植物化学筛选和 DNA 条形码分析,建立了准确有效的鉴定系统。对叶绿体基因组核基因组中的 ITS 位点进行了筛选和评估,并通过邻接系统发生树在一定程度上对 Croton Crassifolius Geisel 进行了有效鉴定。
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引用次数: 0
Xiaochaihu decoction induces Bel-7402/5-FU cell apoptosis and autophagy via PI3K/AKT/mTOR pathway 小柴胡汤通过PI3K/AKT/mTOR通路诱导Bel-7402/5-FU细胞凋亡和自噬
Pub Date : 2023-11-01 DOI: 10.1016/j.jhip.2023.09.007
Xuejun Zhang , Shilan Chen , Xuejiao Wang , Jiao Peng , Jiumao Lin , Jinyan Zhao

Objective

This study aimed to observe the inhibitory effects of xiaochaihu decoction (XCHD) on human hepatocellular carcinoma (HCC) cells resistant to 5-fluorouracil (5-FU) (Bel-7402/5-FU) in vitro and in vivo and investigate its possible mechanisms.

Methods

Bel-7402 ​cells and their resistant cells to 5-FU (Bel-7402/5-FU) were cultured, and a xenograft was established in nude mice. MTT assays were used to detect the cell viability after XCHD treatment, and an inverted phase contrast microscope was used to observe the morphology and flow cytometry and TUNEL assays were used to determine XCHD-induced apoptosis. Western blot was used to detect Bax and Bcl-2 expressions. Cyto-ID staining was used to assess XCHD-induced autophagy, and the autophagy-related protein (LC3, p62, and beclin) was determined. Finally, the PI3K/AKT/mTOR pathway was detected.

Results

Bel-7402/5-FU cells were more resistant to 5-FU compared with Bel-7402 ​cells (P ​< ​0.05), thus XCHD could inhibit the viability of Bel-7402/5-FU cells. Further, XCHD promoted Bel-7402/5-FU cell apoptosis via inducing Bax expression and deducing Bcl-2 expression in vitro and in vivo. Similarly, XCHD promoted autophagy of Bel-7402/5-FU cells by regulating related protein expression. Finally, XCHD blocked the PI3K/AKT/mTOR pathway.

Conclusion

XCHD induces Bel-7402/5-FU cell apoptosis and autophagy via blocking the PI3K/AKT/mTOR pathway which is one of the important mechanisms by which XCHD reverses the multidrug resistance of HCC.

目的观察小柴胡汤(XCHD)体外和体内对5-氟尿嘧啶(5-FU) (Bel-7402/5-FU)耐药的人肝癌细胞的抑制作用,并探讨其可能的机制。方法培养bel -7402细胞及其5-FU耐药细胞(Bel-7402/5-FU),并在裸鼠体内建立异种移植物。MTT法检测XCHD处理后的细胞活力,倒置相差显微镜观察形态学和流式细胞术,TUNEL法检测XCHD诱导的细胞凋亡。Western blot检测Bax和Bcl-2的表达。采用细胞id染色评估xchd诱导的自噬,并检测自噬相关蛋白(LC3、p62、beclin)。最后,检测PI3K/AKT/mTOR通路。结果与Bel-7402细胞相比,Bel-7402/5-FU细胞对5-FU的耐药性更强(P <0.05),因此XCHD可以抑制Bel-7402/5-FU细胞的活力。此外,XCHD通过诱导体内外Bax表达和抑制Bcl-2表达,促进Bel-7402/5-FU细胞凋亡。同样,XCHD通过调节相关蛋白表达促进Bel-7402/5-FU细胞自噬。最后,XCHD阻断PI3K/AKT/mTOR通路。结论XCHD通过阻断PI3K/AKT/mTOR通路诱导Bel-7402/5-FU细胞凋亡和自噬,是XCHD逆转肝癌多药耐药的重要机制之一。
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引用次数: 0
Combination treatment of a deep diabetic toe ulcer with collagenase-santyl dressings and antibiotics: A case report 用胶原酶-山奈敷料和抗生素联合治疗深层糖尿病足趾溃疡:病例报告
Pub Date : 2023-11-01 DOI: 10.1016/j.jhip.2023.11.006
Salkapuram Sunil Kumar , Karthikeyan Elumalai , Srinivasan Sivannan , Sivaneswari Srinivasan , Santhana Krishnan Ramanujam , Binoy Varghese Cherian

A diabetic foot ulcer is defined as the ulceration of tissues brought on by trauma and some peripheral neurological abnormalities, primarily as a result of the bacterial infection. The infection of the toe's surrounding tissue is the primary cause of the infectious diabetic toe ulcer. In this case report, a 58-year-old male patient with a deep foot ulcer was admitted to the emergency ward on October 15, 2022, due to pus discharge at the right big toe of the foot. Antibiotics like Vancomycin 30mg per kg twice per day and Ciprofloxacin 400mg twice per day were suggested, along with enzymatic debridement therapy, which helps stop infections faster. A decrease in wound size and an improvement in overall health showed that the patient's response to the combination therapy was encouraging. The use of collagenase-santyl dressings, along with suitable antibiotics, can play a crucial role in the successful treatment of foot ulcers by facilitating wound healing and preventing complications like cellulitis or osteomyelitis.

糖尿病足溃疡是指由外伤和一些周围神经异常引起的组织溃疡,主要是细菌感染的结果。脚趾周围组织的感染是感染性糖尿病足趾溃疡的主要原因。在本病例报告中,一名 58 岁的足部深溃疡男性患者于 2022 年 10 月 15 日因右脚大脚趾处有脓性分泌物而被送入急诊病房。医生建议使用抗生素,如万古霉素每公斤 30 毫克,每天两次;环丙沙星 400 毫克,每天两次;同时使用酶法清创疗法,这有助于更快地阻止感染。伤口面积的缩小和总体健康状况的改善表明,患者对综合疗法的反应令人鼓舞。使用胶原酶山奈敷料和适当的抗生素,可以促进伤口愈合,预防蜂窝组织炎或骨髓炎等并发症,从而在成功治疗足部溃疡方面发挥关键作用。
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引用次数: 0
Analysis of clinical drug use and construction of pharmacy service model for children with Kawasaki disease based on integration concept 基于整合理念的川崎病患儿临床用药分析及药学服务模式构建
Pub Date : 2023-11-01 DOI: 10.1016/j.jhip.2023.10.001
Huashen He , Yingyao Luo , Binghong Yu , Yingqiang Lai , Jinkun Zheng , Junfeng Ban

Objective

This study aimed to summarize and share the experience of clinical pharmacists in the clinical treatment of children with Kawasaki disease based on the “integration” concept.

Methods

Clinical pharmacists were actively involved in the treatment of children with Kawasaki disease by providing rational drug selection, adjustment advice, and pharmacological monitoring services. Hence, we proposed a pharmacy service model for children with Kawasaki disease based on the “integration” concept.

Results

The pharmacy service model based on the “integration” concept was initially developed by applying integration perception to clinical medication practice, allowing the clinical pharmacist to assist the clinician in controlling the infection in children, and children were discharged from the hospital in good condition.

Conclusion

Clinical pharmacists should initiate cooperation with the treatment team in clinical work and use their professional advantages to ensure that sick children meet the expectations in the medication treatment process to play a crucial role in clinical pharmacy services.

目的总结和分享临床药师基于“整合”理念在川崎病患儿临床治疗中的经验。方法临床药师积极参与川崎病患儿的治疗,提供合理的药物选择、调整建议和药物监测服务。因此,我们提出了一种基于“一体化”理念的川崎病患儿药房服务模式。结果初步建立了基于“一体化”理念的药学服务模式,将一体化感知应用于临床用药实践,使临床药师协助临床医生控制患儿感染,患儿出院状态良好。结论临床药师在临床工作中应主动配合治疗团队,发挥自身专业优势,确保患儿在用药治疗过程中达到预期,在临床药学服务中发挥至关重要的作用。
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引用次数: 0
A new design of coculture microfluidic chip for HepG2 and LO2 cells HepG2和LO2细胞共培养微流控芯片的设计
Pub Date : 2023-11-01 DOI: 10.1016/j.jhip.2023.09.006
Yuan Li , Yingzhi Hu , Hongliang Huang , Jiang Meng , Yue Sun

Objective

In order to better screen targeted drugs, a microfluidic chip that can culture both diseased and normal cells is designed.

Methods

With Human hepatocellular carcinomas (HepG2) and Human normal liver cells (LO2) as the cell models, Polydimethylsiloxane-glass (PDMS-glass) chip as the carrier, and potential anticancer drug sanguinarine as the research object, two cells were co-cultured on the chip and the drug acted on both cells simultaneously in a diffusion manner.

Results

In co-cultured cell chips, the apoptosis rate of HepG2 cells was significantly higher than that of LO2 cells under the action of sanguinarine.

Conclusion

The chip diffusion perfusion form does not damage the cells, and can achieve cell staining and in situ observation more flexibly and conveniently, and more realistically reflects the selective effect of drugs on different cells, which has the advantages of simple operation and low cost.

目的设计一种既能培养病变细胞又能培养正常细胞的微流控芯片,以更好地筛选靶向药物。方法以人肝细胞癌(HepG2)和人正常肝细胞(LO2)为细胞模型,以聚二甲基硅氧烷-玻璃(PDMS-glass)芯片为载体,以潜在抗癌药物血碱为研究对象,在芯片上共培养两种细胞,药物同时扩散作用于两种细胞。结果在共培养细胞芯片中,在血根碱作用下,HepG2细胞的凋亡率明显高于LO2细胞。结论芯片扩散灌注形式不损伤细胞,能更灵活、方便地实现细胞染色和原位观察,更真实地反映药物对不同细胞的选择性作用,具有操作简单、成本低的优点。
{"title":"A new design of coculture microfluidic chip for HepG2 and LO2 cells","authors":"Yuan Li ,&nbsp;Yingzhi Hu ,&nbsp;Hongliang Huang ,&nbsp;Jiang Meng ,&nbsp;Yue Sun","doi":"10.1016/j.jhip.2023.09.006","DOIUrl":"https://doi.org/10.1016/j.jhip.2023.09.006","url":null,"abstract":"<div><h3>Objective</h3><p>In order to better screen targeted drugs, a microfluidic chip that can culture both diseased and normal cells is designed.</p></div><div><h3>Methods</h3><p>With Human hepatocellular carcinomas (HepG2) and Human normal liver cells (LO2) as the cell models, Polydimethylsiloxane-glass (PDMS-glass) chip as the carrier, and potential anticancer drug sanguinarine as the research object, two cells were co-cultured on the chip and the drug acted on both cells simultaneously in a diffusion manner.</p></div><div><h3>Results</h3><p>In co-cultured cell chips, the apoptosis rate of HepG2 cells was significantly higher than that of LO2 cells under the action of sanguinarine.</p></div><div><h3>Conclusion</h3><p>The chip diffusion perfusion form does not damage the cells, and can achieve cell staining and in situ observation more flexibly and conveniently, and more realistically reflects the selective effect of drugs on different cells, which has the advantages of simple operation and low cost.</p></div>","PeriodicalId":100787,"journal":{"name":"Journal of Holistic Integrative Pharmacy","volume":"4 2","pages":"Pages 140-146"},"PeriodicalIF":0.0,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2707368823000894/pdfft?md5=3d212c53be6b6a19fa71d6a3534402e7&pid=1-s2.0-S2707368823000894-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"92047816","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Near infrared spectroscopy discrimination and pattern recognition of Chinese Pogostemon cablin and Agastache rugosa 广藿香和藿香的近红外光谱鉴别及模式识别
Pub Date : 2023-10-26 DOI: 10.1016/j.jhip.2023.09.005
Songping Lan , Jialiang Cai , Hongning Zhao , Dong Wang , Shengguo Ji

Pogostemon cablin (Blanco) Benth. and Agastache rugosa (Fisch. et Mey.) O. Ktze. are commonly used traditional Chinese medicines. They belong to the family Lamiaceae and have very similar macroscopical features, making it difficult to differentiate them. To establish a discriminatory method for P. cablin of various origins that has abundant in chemical components and has high medicinal value, we utilized near-infrared spectroscopy (NIRS) in this study to gather spectral information in the ranging from 4000 to 12,000 cm−1. Subsequently, we employed principal component and cluster analyses to develop qualitative discriminant models. The results showed that spectral pretreatment improved the classification and aggregation characteristics of P. cablin and A. rugosa in principal component and cluster analyses. The percentage of samples correctly classified using the principal component analysis in calibration and validation set was 99.9 ​%. This study results demonstrate that NIRS with pattern recognition can be utilized as a simple and rapid method for distinguishing between P. cablin and non-P. cablin, as well as A. rugosa.

广藿香(Blanco)Benth。和Agastache rugosa(Fisch.et Mey.)O.Ktze。是常用的中药。它们属于Lamiaceae科,具有非常相似的宏观特征,很难区分。为了建立一种对化学成分丰富且具有较高药用价值的各种来源的赤霞珠的鉴别方法,我们在本研究中利用近红外光谱(NIRS)收集了4000至12000 cm-1范围内的光谱信息。随后,我们使用主成分和聚类分析来开发定性判别模型。结果表明,光谱预处理改善了赤霞珠和红曲霉在主成分和聚类分析中的分类和聚集特性。校准和验证集中使用主成分分析正确分类的样本百分比为99.9​%. 该研究结果表明,模式识别的近红外光谱可以作为一种简单快速的方法来区分赤藓和非赤藓。cablin和A.rugosa。
{"title":"Near infrared spectroscopy discrimination and pattern recognition of Chinese Pogostemon cablin and Agastache rugosa","authors":"Songping Lan ,&nbsp;Jialiang Cai ,&nbsp;Hongning Zhao ,&nbsp;Dong Wang ,&nbsp;Shengguo Ji","doi":"10.1016/j.jhip.2023.09.005","DOIUrl":"https://doi.org/10.1016/j.jhip.2023.09.005","url":null,"abstract":"<div><p><em>Pogostemon cablin</em> (Blanco) Benth. and <em>Agastache rugosa</em> (Fisch. et Mey.) O. Ktze. are commonly used traditional Chinese medicines. They belong to the family Lamiaceae and have very similar macroscopical features, making it difficult to differentiate them. To establish a discriminatory method for <em>P</em>. <em>cablin</em> of various origins that has abundant in chemical components and has high medicinal value, we utilized near-infrared spectroscopy (NIRS) in this study to gather spectral information in the ranging from 4000 to 12,000 cm<sup>−1</sup>. Subsequently, we employed principal component and cluster analyses to develop qualitative discriminant models. The results showed that spectral pretreatment improved the classification and aggregation characteristics of <em>P. cablin</em> and <em>A. rugosa</em> in principal component and cluster analyses. The percentage of samples correctly classified using the principal component analysis in calibration and validation set was 99.9 ​%. This study results demonstrate that NIRS with pattern recognition can be utilized as a simple and rapid method for distinguishing between <em>P. cablin</em> and non<em>-P. cablin</em>, as well as <em>A</em>. <em>rugosa</em>.</p></div>","PeriodicalId":100787,"journal":{"name":"Journal of Holistic Integrative Pharmacy","volume":"4 2","pages":"Pages 127-132"},"PeriodicalIF":0.0,"publicationDate":"2023-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"67739257","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Optimisation study on the flavonoid extraction process from Abrus precatorius leaves and the comparison of total flavonoid content by HPLC and UV 阿布鲁叶黄酮提取工艺的优化研究及HPLC和UV法测定总黄酮含量的比较
Pub Date : 2023-10-25 DOI: 10.1016/j.jhip.2023.09.003
Xujiang Yuan , Cuimin He , xianmei Xue , Zhike Liang , Yanfen Chen

Abrus precatorius is a leguminous plant with high medicinal value. Its leaves are rich in flavonoids. There only are limited reports on the extraction process and quality assessment of total flavonoids in Abrus precatorius leaves (APL). This study presents the extraction process of total flavonoids in APL and its optimisation by response surface methodology (RSM). High-performance liquid chromatography (HPLC) and UV methods were used to determine the total flavonoid content and their differences were compared. The feasible extraction parameters of total flavonoids from APL were found to be 50% ethanol, a liquid-solid ratio of 50:1, an extraction time of 60 ​min and two extraction cycles. The number of extraction cycles was the main influencing factor. The total flavonoid content as determined by this optimised process was 69.0 ​mg/g by HPLC and 41.7 ​mg/g by UV. There was a significant difference between the total flavonoid content determined by the UV method and HPLC. A comparative analysis of 29 samples in RSM and 14 batches of APL showed that the total flavonoid content as determined by UV was only about half of that determined by HPLC. The factors that influence this difference and potential solutions to this challenge were discussed. The results of this study could lay a foundation for the quality assessment, standardisation, development and utilisation of flavonoids in APL.

Abrus pretorius是一种豆科植物,具有很高的药用价值。它的叶子富含黄酮类化合物。关于阿布鲁叶中总黄酮的提取工艺和质量评价的报道有限。本研究介绍了APL中总黄酮的提取工艺及其响应面法优化。采用高效液相色谱法和紫外分光光度法测定总黄酮含量,并对二者的差异进行了比较。从APL中提取总黄酮的最佳工艺参数为50%乙醇,液固比为50:1,提取时间为60​min和两个提取循环。萃取循环次数是主要影响因素。通过该优化工艺测定的总黄酮含量为69.0​mg/g,通过HPLC和41.7​mg/g。紫外分光光度法和高效液相色谱法测定的总黄酮含量有显著差异。对29个RSM样品和14批APL样品的比较分析表明,通过UV测定的总黄酮含量仅为HPLC测定的总类黄酮含量的一半左右。讨论了影响这种差异的因素以及应对这一挑战的潜在解决方案。本研究结果可为APL中黄酮类化合物的质量评价、标准化、开发利用奠定基础。
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引用次数: 0
A pan-cancer analysis of oncogenic protein tyrosine phosphatase subfamily PTP4As 致癌蛋白酪氨酸磷酸酶亚家族PTP4As的泛癌分析
Pub Date : 2023-10-01 DOI: 10.1016/j.jhip.2023.07.001
Mingyang Yu, Chunxu Lin, Min Wei

Objective

The objective of this study was to conduct a comprehensive pan-cancer analysis of Protein tyrosine phosphatase 4A (PTP4As), specifically PTP4A1, PTP4A2, and PTP4A3, to investigate their aberrant expression, genomic alterations, prognostic values, and molecular functions. The aim was to evaluate the roles of PTP4As in cancer development and progression, as previous research has primarily focused on PTP4A3 and yielded inconsistent results regarding their expression in cancers.

Methods

A meticulous and extensive analysis of PTP4As was performed across diverse cancer types. mRNA expression levels of PTP4A isoforms were examined, and correlations between protein expression and mRNA expression were investigated. Genomic alterations affecting PTP4As, such as amplification, were analyzed. Survival analysis was conducted to assess the prognostic values of PTP4As in different cancers. Additionally, pathway enrichment analysis was performed to identify signaling pathways and biological processes associated with PTP4A2 and PTP4A3.

Results

The analysis revealed that PTP4A3 exhibited the most prevalent up-regulation at the mRNA level among the PTP4A isoforms. PTP4A2 mRNA expression in cancer generally displayed an up-regulated trend. However, inconsistent results were observed for PTP4A1 expression, even within the same cancer type but across different datasets, indicating the need for further investigation. The correlation between PTP4As protein expression and mRNA expression was found to be weak, indicating the complexity of their regulatory mechanisms. Genomic analysis showed that amplification was the major type of alteration affecting PTP4As, although it did not always translate into higher expression. Survival analysis revealed that high PTP4As expression was typically associated with unfavorable prognoses in several cancers, although exceptions existed. Pathway enrichment analysis unveiled novel signaling pathways and biological processes potentially influenced by PTP4As.

Conclusion

The pan-cancer analysis of PTP4As provided insights into their aberrant expression, genomic alterations, prognostic values, and molecular functions. PTP4A3 exhibited the most prevalent up-regulation, while PTP4A2 showed a general up-regulated trend. Inconsistent results were observed for PTP4A1 expression, warranting further investigation. These findings contribute to our understanding of the molecular mechanisms through which PTP4As may contribute to cancer pathogenesis.

本研究的目的是对蛋白酪氨酸磷酸酶4A (PTP4As),特别是PTP4A1、PTP4A2和PTP4A3进行泛癌分析,探讨它们的异常表达、基因组改变、预后价值和分子功能。其目的是评估PTP4As在癌症发生和进展中的作用,因为之前的研究主要集中在PTP4A3上,并且在癌症中的表达方面得出了不一致的结果。方法对不同癌症类型的PTP4As进行细致而广泛的分析。检测PTP4A亚型mRNA表达水平,并研究蛋白表达与mRNA表达的相关性。分析了影响PTP4As的基因组改变,如扩增。通过生存分析来评估PTP4As在不同癌症中的预后价值。此外,我们还进行了途径富集分析,以确定与PTP4A2和PTP4A3相关的信号通路和生物学过程。结果PTP4A亚型中,PTP4A3在mRNA水平上的上调最为普遍。PTP4A2 mRNA在肿瘤中的表达普遍呈上调趋势。然而,即使在相同的癌症类型中,但在不同的数据集中,PTP4A1表达的结果也不一致,这表明需要进一步研究。PTP4As蛋白表达与mRNA表达的相关性较弱,表明其调控机制的复杂性。基因组分析表明,扩增是影响PTP4As的主要变异类型,尽管它并不总是转化为更高的表达。生存分析显示,高PTP4As表达通常与几种癌症的不良预后相关,尽管存在例外。途径富集分析揭示了PTP4As可能影响的新的信号通路和生物过程。结论通过对PTP4As的泛癌分析,可以深入了解PTP4As的异常表达、基因组改变、预后价值和分子功能。PTP4A3的上调最为普遍,PTP4A2的上调趋势较为普遍。PTP4A1表达结果不一致,值得进一步研究。这些发现有助于我们理解PTP4As参与癌症发病的分子机制。
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引用次数: 0
The volatile oil from Acori Graminei Rhizoma downregulates NMDARs-ERK1/2-CREB signaling pathway to alleviate pain related emotions induced by inflammatory pain in rats 刺五加挥发油能下调 NMDARs-ERK1/2-CREB 信号通路,缓解炎症性疼痛诱导的大鼠疼痛相关情绪
Pub Date : 2023-03-31 DOI: 10.1016/S2707-3688(23)00094-8
Shiqi LI, Cuizhu YANG, Yuxin MA
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引用次数: 0
期刊
Journal of Holistic Integrative Pharmacy
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