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Exploring membrane proteins dynamic in plant cells with fluorescence correlation spectroscopy 利用荧光相关光谱探索植物细胞中的膜蛋白动态
Pub Date : 2024-07-01 DOI: 10.1016/j.ncrops.2024.100032
Wenwen Duan , Kaiwen Li , Jialu Li , Ning Ding , Suting Wang , Yaling Zou , Zihao Zhang , Zhikun Duan , Jingjing Xing

Biomolecule interactions and macromolecular rearrangement participate in numerous cellular functions in plants, and resolving the dynamics of plasma membrane proteins represents a central goal in current plant biology. Compared to yeast and mammalian systems, the quantification of heterogeneous distribution and dynamics of membrane proteins in cellular processes remains sparse in plant cells. In this study, we introduce the application of fluorescence correlation spectroscopy (FCS) and fluorescence cross-correlation spectroscopy (FCCS) in measuring membrane protein diffusion, concentration and interactions in living plant cell. The review showed FCS/FCCS as a tool for imaging the membrane proteins fused with a fluorescent tag, quantifying the density fluctuation and interactions of membrane proteins in the living cells of plants. Owing to the single-molecular level sensitivity and minimally invasive of FCS/FCCS, their application provides an ideal approach to understanding plant cell membrane lateral organization.

生物分子相互作用和大分子重排参与了植物细胞的许多功能,而解析质膜蛋白的动态是当前植物生物学的一个核心目标。与酵母和哺乳动物系统相比,植物细胞中膜蛋白在细胞过程中的异质分布和动态的定量研究仍然很少。本研究介绍了荧光相关光谱(FCS)和荧光交叉相关光谱(FCCS)在测量活体植物细胞中膜蛋白扩散、浓度和相互作用方面的应用。综述显示,FCS/FCCS 是对融合了荧光标签的膜蛋白进行成像的工具,可量化植物活细胞中膜蛋白的密度波动和相互作用。由于 FCS/FCCS 具有单分子水平的灵敏度和微创性,其应用为了解植物细胞膜横向组织提供了一种理想的方法。
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引用次数: 0
Crop designs: The ideal root architecture for future crop breeding 作物设计:未来作物育种的理想根系结构
Pub Date : 2024-06-02 DOI: 10.1016/j.ncrops.2024.100030
Jiaxuan Sui, Huiyu Tian, Zhaojun Ding, Xiangpei Kong

Root system architecture, a crucial agronomic trait for sustainable crop production, is influenced by a variety of internal developmental signals and external environmental factors. In this review, we highlight recent advancements in understanding the molecular mechanisms behind root meristem maintenance, cell differentiation, lateral root growth, root hair development, and crown root formation. Additionally, we explore how abiotic stresses such as drought, salinity, nitrate deficiency, and aluminum toxicity impact root system architecture. We identify key target genes that regulate root system architecture, offering potential targets for genome editing in future crop improvement. Finally, we discuss the opportunities and challenges in the de novo design of root system architecture.

根系结构是作物可持续生产的一个重要农艺性状,受到各种内部发育信号和外部环境因素的影响。在这篇综述中,我们将重点介绍在了解根分生组织维持、细胞分化、侧根生长、根毛发育和冠根形成背后的分子机制方面取得的最新进展。此外,我们还探讨了干旱、盐度、硝酸盐缺乏和铝毒性等非生物胁迫如何影响根系结构。我们确定了调控根系结构的关键靶基因,为未来作物改良中的基因组编辑提供了潜在靶标。最后,我们讨论了根系结构全新设计的机遇与挑战。
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引用次数: 0
Regulatory mechanisms and breeding strategies for crop drought resistance 作物抗旱性的调控机制和育种策略
Pub Date : 2024-05-24 DOI: 10.1016/j.ncrops.2024.100029
Zhenghua He , Pei Zhang , Haitao Jia , Shilong Zhang , Elsayed Nishawy , Xiaopeng Sun , Mingqiu Dai

Drought is a primary abiotic stress affecting crops, leading to plant stomatal closure, reduced photosynthetic capacity, and reduced yields or even harvest failure. Severe drought can adversely impact agricultural production, ecosystems, and socio-economic capacities. Recently, researchers have studied the regulatory mechanisms of crop drought resistance and cloned hundreds of genes via genetic and molecular approaches. However, a limited number of the cloned genes have been successfully employed in drought resistance breeding, suggesting that drought resistance regulation is too complex. More work must be done to fully understand the regulatory networks of drought responses to breed drought-resistant and high-yield crop varieties. This review outlines the current achievements in investigating crop drought responses, particularly regulation by phytohormones and regulation of genes at transcriptional, post-translational, and epigenetic levels in crop drought responses. Finally, we examine the problems and potential solutions in breeding crop drought resistance and propose strategies for crop drought resistance improvement.

干旱是影响农作物的主要非生物胁迫,会导致植物气孔关闭、光合能力降低、产量减少甚至歉收。严重干旱会对农业生产、生态系统和社会经济能力造成不利影响。最近,研究人员对作物抗旱性的调控机制进行了研究,并通过基因和分子方法克隆了数百个基因。然而,成功用于抗旱育种的克隆基因数量有限,这表明抗旱调控过于复杂。要全面了解干旱反应的调控网络,培育出抗旱高产的作物品种,还需要做更多的工作。本综述概述了目前在研究作物干旱响应方面取得的成就,特别是植物激素的调控和作物干旱响应中基因在转录、翻译后和表观遗传水平上的调控。最后,我们探讨了作物抗旱育种中存在的问题和潜在的解决方案,并提出了作物抗旱改良策略。
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引用次数: 0
The hormonal, metabolic, and environmental regulation of plant shoot branching 植物芽分枝的激素、代谢和环境调控
Pub Date : 2024-05-23 DOI: 10.1016/j.ncrops.2024.100028
Yuqi Liu , Shangyu Chen , Sikander Pal , Jingquan Yu , Yanhong Zhou , Lam-Son Phan Tran , Xiaojian Xia

Plants have evolved varied structures for environmental adaptation. Shoot branching, as a part of plant architecture, influences the allocation of sugars produced by photosynthesis and thus greatly impacts crop yields. The activity of axillary meristem- and apical dominance govern- the shoot branching patterns. In this review, we summarize the key factors involved in the formation of lateral branches, and the mechanisms of how these factors are interconnected. In particular, we focus on recent advances in understanding how sugar and environmental signals affect the hormonal signaling network to regulate apical dominance. Ultimately, we propose that epigenetic modifications are critical mechanisms underlying the plasticity of shoot branching, and that precise targeted gene editing is promising for shaping the ideal plant architecture.

植物为适应环境进化出了多种多样的结构。嫩枝作为植物结构的一部分,影响着光合作用产生的糖分的分配,从而对作物产量产生重大影响。腋生分生组织的活性和顶端优势控制着嫩枝的分枝模式。在这篇综述中,我们总结了参与侧枝形成的关键因素,以及这些因素之间相互联系的机制。特别是,我们重点介绍了在了解糖和环境信号如何影响激素信号网络以调控顶端优势方面的最新进展。最终,我们提出表观遗传修饰是芽分枝可塑性的关键机制,精确的靶向基因编辑有望塑造理想的植物结构。
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引用次数: 0
Lighting-up Wars: Stories of Ca2+ Signaling in Plant Immunity 照明战争:植物免疫中的 Ca2+ 信号传导故事
Pub Date : 2024-05-18 DOI: 10.1016/j.ncrops.2024.100027
Zilu Zhang , Qi Wang , Haiqiao Yan , Xiaoyan Cang , Wei Li , Jinyu He , Meixiang Zhang , Laiqing Lou , Ran Wang , Ming Chang

Calcium ions (Ca2+) serve as key messengers in plant immune reactions. A typical Ca2+ signaling involves three steps: encoding specific Ca2+ signatures by Ca2+-permeable channels, decoding Ca2+ signals by Ca2+ sensors, and downstream responses. This review focuses on plasma membrane-localized Ca2+-permeable channels and cytosolic Ca2+ sensors, unraveling their roles in cytosolic Ca2+ influx and immune signaling during pattern-triggered immunity, effector-triggered immunity, and autoimmunity. Several unresolved questions were highlighted, including the regulation of Ca2+-permeable channel activity for immune induction and the mechanism behind Ca2+ influx-triggered hypersensitive response cell death. This concise overview provides insights into the complex interplay of Ca2+ signaling in plant immunity, paving the way for future investigations on molecular plant-microbe interactions.

钙离子(Ca2+)是植物免疫反应的关键信使。典型的 Ca2+ 信号传递包括三个步骤:通过 Ca2+ 渗透通道编码特定的 Ca2+ 信号,通过 Ca2+ 传感器解码 Ca2+ 信号,以及下游反应。本综述侧重于质膜定位的Ca2+渗透通道和细胞膜Ca2+传感器,揭示它们在模式触发免疫、效应触发免疫和自身免疫过程中细胞膜Ca2+流入和免疫信号转导中的作用。报告强调了几个尚未解决的问题,包括免疫诱导中 Ca2+ 渗透通道活性的调节以及 Ca2+ 流入触发超敏反应细胞死亡背后的机制。这篇简明综述深入揭示了植物免疫中 Ca2+ 信号的复杂相互作用,为今后研究植物与微生物的分子相互作用铺平了道路。
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引用次数: 0
Exploring the frontier of plant phase separation: Current insights and future prospects 探索植物相分离的前沿:当前见解与未来展望
Pub Date : 2024-05-16 DOI: 10.1016/j.ncrops.2024.100026
Panting Fan , Jingjing Zhang , Lefei Gao , Mingke Wang , Hui Kong , Shengbo He

In the rapidly evolving field of biology, phase separation has recently emerged as a revolutionary perspective, shedding new light on our comprehension of cellular processes. This review provides a comprehensive overview of current knowledge regarding phase separation in plants and charts promising avenues for future exploration. We delve into the fundamental principles of plant phase separation, highlighting the roles played by intrinsically disordered regions and prion-like domains. Summarizing significant advancements, we explore the involvement of phase separation in plant responses to environmental cues, as well as its involvement in growth and developmental processes, and plant-microbe interactions. Additionally, we present a streamlined workflow designed to guide the scientific community in conducting phase separation studies in plants. Lastly, we delineate lingering questions and propose potential applications of phase separation in agriculture.

在快速发展的生物学领域,相分离最近成为一个革命性的观点,为我们理解细胞过程带来了新的启示。这篇综述全面概述了目前有关植物相分离的知识,并描绘了未来探索的前景。我们深入探讨了植物相分离的基本原理,强调了固有无序区和朊病毒样结构域所发挥的作用。在总结重大进展的基础上,我们探讨了相分离在植物对环境线索的反应、生长和发育过程以及植物与微生物相互作用中的参与。此外,我们还介绍了旨在指导科学界开展植物相分离研究的简化工作流程。最后,我们提出了相分离在农业中的潜在应用。
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引用次数: 0
Applications for single-cell and spatial transcriptomics in plant research 单细胞和空间转录组学在植物研究中的应用
Pub Date : 2024-05-12 DOI: 10.1016/j.ncrops.2024.100025
Qing Sang, Fanjiang Kong

Cells of multicellular plants possess inherent heterogeneity. Recent progress in single-cell RNA sequencing (scRNA-seq) allows researchers to classify, characterize, and distinguish individual cells at the transcriptome level, enabling the identification of rare cell populations with functional importance. However, scRNA-seq obscures spatial information about cells. Spatial transcriptomics approaches have substantially improved our capacity to detect the spatial distribution of RNA transcripts throughout tissues, yet it remains challenging to characterize whole-transcriptome-level data for single cells spatially. In this review, we offer a concise overview of the scRNA-seq and spatial transcriptomics experimental and computational procedures and the computational strategies required to integrate scRNA-seq data with spatial transcriptomics. We demonstrate their impact on plant fundamental cell biology, discuss their advantages and current challenges, and provide an outlook on the future.

多细胞植物的细胞具有固有的异质性。单细胞 RNA 测序(scRNA-seq)技术的最新进展使研究人员能够在转录组水平上对单个细胞进行分类、描述和区分,从而鉴定出具有重要功能的稀有细胞群。然而,scRNA-seq 模糊了细胞的空间信息。空间转录组学方法大大提高了我们检测整个组织中 RNA 转录本空间分布的能力,但要在空间上表征单细胞的全转录组水平数据仍具有挑战性。在这篇综述中,我们简要概述了 scRNA-seq 和空间转录组学的实验和计算程序,以及将 scRNA-seq 数据与空间转录组学整合所需的计算策略。我们展示了它们对植物基础细胞生物学的影响,讨论了它们的优势和当前面临的挑战,并对未来进行了展望。
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引用次数: 0
ZmHAK17 encodes a Na+-selective transporter that promotes maize seed germination under salt conditions ZmHAK17 编码一种 Na+ 选择性转运体,可在盐分条件下促进玉米种子萌发
Pub Date : 2024-05-06 DOI: 10.1016/j.ncrops.2024.100024
Limin Wang , Yanyan Wang , Pan Yin , Caifu Jiang , Ming Zhang

Elevated sodium ion (Na+) in saline farmlands adversely affect crops, notably by inhibiting seed germination. Given the importance of High-Affinity K+ Transporter (HAK) family Na+ transporters in plant salt tolerance and ZmHAK4 role in maize salt tolerance, our study focuses on characterizing HAK transporters related to ZmHAK4 in maize’s salt stress response. We found that ZmHAK17 is vital for promoting seed germination under saline conditions. Expressed mainly in the germinating embryo’s radicle, ZmHAK17, encodes a Na+ transporter located in the plasma membrane. Increased ZmHAK17 transcript levels under salt stress facilitate Na+ efflux from the radicle, preventing Na+ accumulation in the embryo and reducing salt stress effects on germination. Mutants lacking ZmHAK17 exhibit salt-sensitive germination. This study highlights ZmHAK17 as a key transporter enhancing maize germination in saline conditions, deepening our understanding of HAK family Na+ transporters’ role in salt tolerance and offering a new target gene for salt-tolerant maize breeding.

盐碱地中钠离子(Na+)的升高会对农作物产生不利影响,尤其是抑制种子萌发。鉴于高亲和性K+转运体(HAK)家族Na+转运体在植物耐盐性中的重要性以及ZmHAK4在玉米耐盐性中的作用,我们的研究重点是鉴定与ZmHAK4相关的HAK转运体在玉米盐胁迫反应中的特性。我们发现,ZmHAK17 在盐碱条件下对促进种子萌发至关重要。ZmHAK17 主要在发芽胚的胚根中表达,编码位于质膜上的 Na+ 转运体。在盐胁迫条件下,ZmHAK17 转录物水平的增加会促进 Na+ 从胚根中外流,从而防止 Na+ 在胚中积累,减少盐胁迫对发芽的影响。缺乏 ZmHAK17 的突变体表现出盐敏感性萌芽。这项研究强调了 ZmHAK17 是在盐胁迫条件下提高玉米发芽率的关键转运体,加深了我们对 HAK 家族 Na+ 转运体在耐盐中作用的理解,并为耐盐玉米育种提供了一个新的目标基因。
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引用次数: 0
A necessary considering factor for crop resistance: Precise regulation and effective utilization of beneficial microorganisms 作物抗性的必要考虑因素:精确调节和有效利用有益微生物
Pub Date : 2024-04-15 DOI: 10.1016/j.ncrops.2024.100023
Chenxi Kou , Feiyang Song , Dandan Li, Hongyang Xu, Shuxin Zhang, Wei Yang, Wenchong Shi, Zheng Gao

Under global climate change circumstances, there has been growing acknowledgment of the critical need to prevent and manage both biotic and abiotic stress in crops. Plants employ a variety of signaling molecules, such as jasmonic acid (JA), abscisic acid (ABA), and Ca2+, to endure stress. Additionally, they utilize reactive oxygen species (ROS) and detoxifiers while also harnessing the assistance of beneficial microorganisms, including Bacillus, Pseudomonas, Streptomyces, and others. These microorganisms play a pivotal role in aiding crops in stress management, albeit with certain limitations to their efficacy. This article offers a synthesis and discourse on how crops can selectively engage with beneficial microorganisms via their root systems, elucidating the contributions of these microorganisms to stress tolerance. Drawing upon current insights, we propose refined strategies for leveraging microorganisms to bolster crop stress resilience. By advancing our grasp of plant-microorganism interactions and judiciously selecting and employing beneficial microorganisms, we aim to enhance the dependability and efficacy of microbial products in enhancing crop stress tolerance. This knowledge ultimately equips agricultural practitioners with the information needed to make informed decisions and bolster crops in adapting to rapidly changing environmental conditions.

在全球气候变化的情况下,人们越来越认识到,预防和管理作物的生物和非生物胁迫至关重要。植物利用茉莉酸(JA)、脱落酸(ABA)和 Ca2+ 等多种信号分子来承受胁迫。此外,它们还利用活性氧(ROS)和解毒剂,同时利用有益微生物(包括芽孢杆菌、假单胞菌、链霉菌等)的帮助。这些微生物在帮助作物进行胁迫管理方面发挥着举足轻重的作用,尽管其功效有一定的局限性。本文综述并论述了作物如何通过根系选择性地与有益微生物接触,阐明了这些微生物对作物抗逆性的贡献。根据目前的见解,我们提出了利用微生物提高作物抗逆性的改进策略。通过进一步掌握植物与微生物之间的相互作用,明智地选择和利用有益微生物,我们旨在提高微生物产品在增强作物抗逆性方面的可靠性和有效性。这些知识最终将为农业从业人员提供做出明智决策所需的信息,帮助作物适应快速变化的环境条件。
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引用次数: 0
Plant cell walls: Emerging targets of stomata engineering to improve photosynthesis and water use efficiency 植物细胞壁:提高光合作用和水分利用效率的气孔工程新目标
Pub Date : 2024-03-30 DOI: 10.1016/j.ncrops.2024.100021
Yueyuan Wang, Pan Li, Wan Sun, Tian Zhang

Stomata are tiny pores on leaf surfaces essential for plant transpiration and photosynthesis. As gatekeepers that mediate gas exchange between plants and the atmosphere, stomata exert a major influence on global carbon and water cycles. The shape and function of stomata are physically constrained by stomatal walls. Compared to the extensively studied genetic mechanisms of stomatal development and guard cell signaling, recent progress is only beginning to uncover the role of plant cell walls in stomatal development and dynamics. In this review, we summarize the research on cell walls of the kidney-shaped stomata from dicots and the dumbbell-shaped stomata from grasses. As the dynamic response of grass stomata is closely linked to its anatomical features that are limited by cell walls, we discuss the potential of plant cell walls as crucial targets for crop engineering to enhance carbon assimilation and water use efficiency.

气孔是叶片表面的小孔,对植物的蒸腾作用和光合作用至关重要。作为介导植物与大气之间气体交换的守门员,气孔对全球碳循环和水循环产生了重大影响。气孔的形状和功能受到气孔壁的物理限制。与广泛研究的气孔发育和保卫细胞信号传导的遗传机制相比,最近的研究进展才刚刚开始揭示植物细胞壁在气孔发育和动态中的作用。在这篇综述中,我们总结了有关双子叶植物肾形气孔和禾本科植物哑铃形气孔细胞壁的研究。由于禾本科植物气孔的动态响应与其受细胞壁限制的解剖学特征密切相关,我们讨论了植物细胞壁作为作物工程学关键目标的潜力,以提高碳同化和水分利用效率。
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引用次数: 0
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New Crops
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