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Uncovering the function of peptides: Bridging hormone signaling, microbial interactions, and root development in plants 揭示肽的功能:连接植物的激素信号、微生物相互作用和根系发育
Pub Date : 2024-01-29 DOI: 10.1016/j.ncrops.2024.100011
Yuwen Zhang , Xingliang Duan , Yuanming Xie, Wei Xuan

Plant root systems are critical for absorbing water and nutrients and anchoring plants in the soil, and their development is regulated by phytohormones and complex signaling pathways. Recent studies have identified small peptides as essential players in governing root development, binding to specific receptors on the cell membrane, and triggering signaling processes. In this study, we summarize recent advances in small peptide regulation of root system architecture and tissue organization, as well as the molecular interaction between peptides and canonical hormone signaling. Additionally, we discuss the functions of small peptides in modulating root development responses to environmental forces like nitrogen and phosphate starvation, osmotic stress, and soil microbes through the activation of local and systemic signaling pathways. This review offers a comprehensive overview of peptide signaling during plant root development and prospects for further crop breeding applications.

植物根系是吸收水分和养分以及将植物固定在土壤中的关键,其发育受植物激素和复杂信号途径的调控。最近的研究发现,小肽是调控根系发育、与细胞膜上的特定受体结合并触发信号传导过程的重要角色。在本研究中,我们总结了小肽调控根系结构和组织的最新进展,以及小肽与典型激素信号之间的分子相互作用。此外,我们还讨论了小肽在通过激活局部和系统信号通路来调节根系发育对氮磷饥饿、渗透胁迫和土壤微生物等环境力量的反应方面的功能。这篇综述全面概述了植物根系发育过程中的多肽信号传导以及作物育种的进一步应用前景。
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引用次数: 0
Current, faltering, and future strategies for advancing microbiome-assisted sustainable agriculture and environmental resilience 推进微生物组辅助可持续农业和环境复原力的当前、困难和未来战略
Pub Date : 2024-01-29 DOI: 10.1016/j.ncrops.2024.100013
Ahmad Humayan Kabir , Md. Zakaria Ibne Baki , Bulbul Ahmed , Mohammad Golam Mostofa

Establishing global sustainable agriculture emerges as the primary, indispensable strategy to meet escalating food demands and address environmental preservation amidst the challenges posed by severe climate change. The intricate communities of microorganisms associated with plants, collectively termed the plant microbiome, wield significant influence over the vitality and productivity of plant species. Unleashing the potential of the plant microbiome stands as a pivotal approach to safeguard and rejuvenate our planet. However, the complex nature of microbiome interactions, coupled with their limited persistence in intricate environmental settings due to gaps in understanding or technological limitations, has impeded substantial progress in this field. This review explores innovative and revitalized strategies for harnessing microbiome-based enhancements in crop fitness. Additionally, we illuminate the challenges encountered in deciphering the intricate interplay between the microbiome and its host, particularly in the context of mitigating the adverse influences of climate change on crop resilience. To navigate these complexities, we advocate for a comprehensive approach that considers both host and microbiome-oriented perspectives. This dual-focused strategy aims to overcome current limitations and pave the way toward a future where microbiome intervention forms the bedrock of sustainable agriculture and environmental protection.

面对严重气候变化带来的挑战,建立全球可持续农业已成为满足日益增长的粮食需求和保护环境不可或缺的主要战略。与植物相关的错综复杂的微生物群落统称为植物微生物组,对植物物种的生命力和生产力具有重大影响。释放植物微生物群的潜力是保护我们的地球并使之恢复活力的关键方法。然而,微生物组相互作用的复杂性,以及由于认识上的差距或技术上的限制而导致的微生物组在复杂环境中的持久性有限,阻碍了这一领域的实质性进展。本综述探讨了利用微生物组提高作物适应性的创新和振兴战略。此外,我们还阐明了在解读微生物组及其宿主之间错综复杂的相互作用时所遇到的挑战,特别是在减轻气候变化对作物抗逆性的不利影响方面。为了驾驭这些复杂性,我们主张采用一种综合方法,同时考虑宿主和微生物组这两个面向的视角。这种双管齐下的策略旨在克服当前的局限性,为未来铺平道路,使微生物组干预成为可持续农业和环境保护的基石。
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引用次数: 0
ZmMYB56 regulates stomatal closure and drought tolerance in maize seedlings through the transcriptional regulation of ZmTOM7 ZmMYB56 通过 ZmTOM7 的转录调控玉米幼苗的气孔关闭和耐旱性
Pub Date : 2024-01-29 DOI: 10.1016/j.ncrops.2024.100012
Baozhu Li , Runan Liu , Jiong Liu , Hui Zhang , Yanan Tian , Tingting Chen , Jiaxing Li , Fuhang Jiao , Tengfei Jia , Yingxue Li , Xiangyu Zhang , Han Li , Xiang Zhao , David W. Galbraith , Chun-peng Song

The growth and yield of essential crops, including maize, are significantly endangered by drought. Closing stomata, limiting water dissipation, and improving water use efficiency are important components of plant drought responses. In our study, the MYB-like transcription factor ZmMYB56, expressed in maize guard cells, played important roles in regulating stomatal closure and drought tolerance. Mutations in ZmMYB56 triggered elevated stomatal conductance, rapid water loss in isolated leaves, and severe drought sensitivity in plants. ZmMYB56 possesses transcriptional activation activity, and is expressed specifically in stomatal guard cells. As an R2R3 transcription factor, ZmMYB56 can bind the cis-acting element on the ZmTOM7 promoter sequence, activating its expression. Correspondingly, the ZmTOM7 transcript level is downregulated in Zmmyb56 seedlings. Transgenic Arabidopsis plants overexpressing ZmTOM7 exhibit limited stomatal conductance and elevated drought tolerance, while the ZmTOM7 mutation is linked to higher stomatal conductance and substantial drought sensitivity in maize seedlings. According to these findings, we conclude that ZmTOM7 operates as a key target gene of ZmMYB56 and is involved in ZmMYB56-regulated stomatal closure and maize drought tolerance. Our findings regarding the functional mechanisms of maize ZmMYB56 transcription factors in stomatal closure and drought stress enable a potential genetic resource for improving the drought resistance of maize.

干旱严重危害包括玉米在内的主要作物的生长和产量。关闭气孔、限制水分散失和提高水分利用效率是植物干旱响应的重要组成部分。在我们的研究中,玉米保卫细胞中表达的 MYB 样转录因子 ZmMYB56 在调节气孔关闭和耐旱性方面发挥了重要作用。ZmMYB56的突变会导致气孔导度升高、离体叶片水分快速流失以及植物对干旱的严重敏感性。ZmMYB56 具有转录激活活性,并在气孔保卫细胞中特异表达。作为一个 R2R3 转录因子,ZmMYB56 能与 ZmTOM7 启动子序列上的顺式作用元件结合,激活其表达。相应地,Zmmyb56幼苗中 ZmTOM7 的转录水平会下调。过表达 ZmTOM7 的转基因拟南芥植株表现出有限的气孔导度和较高的耐旱性,而 ZmTOM7 突变与玉米幼苗较高的气孔导度和较强的干旱敏感性有关。根据这些发现,我们认为 ZmTOM7 是 ZmMYB56 的一个关键靶基因,参与了 ZmMYB56 调控的气孔关闭和玉米耐旱性。我们关于玉米 ZmMYB56 转录因子在气孔关闭和干旱胁迫中的功能机制的发现为提高玉米的抗旱性提供了潜在的遗传资源。
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引用次数: 0
Mycorrhizal signals promote root development dependent on LysM-receptor like kinases in rice 菌根信号对水稻根系发育的促进作用依赖于 LysM 受体激酶
Pub Date : 2023-12-17 DOI: 10.1016/j.ncrops.2023.12.004
Jiangman He , Huiling Dai , Xiaowei Zhang , Ertao Wang

Roots play a fundamental role in plant growth and development, serving various functions, including anchoring, water absorption, nutrient uptake, and adaptation diverse environmental conditions, such as abiotic stresses and biotic interactions. Arbuscular mycorrhizal (AM) fungi release diffusible signaling molecules known as mycorrhizal factors (Myc factors) to establish communication with plants. Extensive research has established that Myc factors play a pivotal role in orchestrating root architectural changes before fungal colonization occurs. In this study, we investigate the impact of the Myc factor CO4 on the architectural modifications of rice roots. Our findings reveal that CO4 actively promotes the development of crown roots and lateral roots in wild-type rice plants. Furthermore, we have identified that pivotal role of receptors such as OsCERK1, OsMYR1, and OsCEBiP in mediating the stimulatory effects of CO4. Knockout mutants of these receptors exhibit a significant reduction in the number of lateral roots and crown roots with lateral roots, along with decreased sensitivity to CO4. Conversely, the overexpression of OsMYR1 leads to a substantial increase in lateral roots and crown roots with lateral roots, even in the absence of CO4 treatment. We propose that CO4-induced root architecture development offers promising opportunities for enhancing lateral root growth, which, in turn, can promote nutrient uptake through direct Myc factor application.

根系在植物生长和发育过程中扮演着重要角色,具有多种功能,包括锚定、吸水、吸收养分以及适应不同的环境条件,例如非生物胁迫和生物相互作用。丛枝菌根(AM)真菌释放称为菌根因子(Myc因子)的可扩散信号分子,与植物建立交流。大量研究证实,在真菌定殖之前,Myc因子在协调根系结构变化方面发挥着关键作用。在本研究中,我们研究了 Myc 因子 CO4 对水稻根系结构变化的影响。我们的研究结果表明,CO4 能积极促进野生型水稻植株冠根和侧根的发育。此外,我们还确定了 OsCERK1、OsMYR1 和 OsCEBiP 等受体在介导 CO4 的刺激作用中的关键作用。这些受体的敲除突变体表现出侧根和带有侧根的冠根数量显著减少,同时对 CO4 的敏感性降低。相反,过量表达 OsMYR1 会导致侧根和带有侧根的冠根数量大幅增加,即使在没有 CO4 处理的情况下也是如此。我们认为,CO4诱导的根系结构发展为增强侧根生长提供了大好机会,而侧根生长反过来又能通过直接应用Myc因子促进养分吸收。
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引用次数: 0
The molecular associations between the SnRK1 complex and carbon/nitrogen metabolism in plants SnRK1 复合物与植物碳/氮代谢之间的分子联系
Pub Date : 2023-12-15 DOI: 10.1016/j.ncrops.2023.12.003
Chao Han , Honglei Wang , Wen Shi , Ming-Yi Bai

Sucrose non-fermenting1 (SNF1)-related kinase 1 (SnRK1) serves as a conserved molecular entity in plants, responding to energy stresses such as prolonged darkness, hypoxia, and photosynthesis inhibition. Its role involves orchestrating transcriptional reprogramming to enhance plant fitness in diverse environments. In this study, we delve into how SnRK1 influences carbon and nitrogen metabolism in Arabidopsis and other crop species through both transcriptional regulation and direct phosphorylation modification. Additionally, we explore the impact of sugar metabolites on SnRK1 activity in plants. The assembly mechanisms of the SnRK1 complex are also investigated by drawing insights from mammalian and yeast systems. Furthermore, we provide a comprehensive summary of the interplay between SnRK1 activity, autophagy, and virus defense. Collectively, our findings illuminate the intricate molecular connections between the SnRK1 complex and carbon/nitrogen metabolism in plants.

蔗糖不发酵1(SNF1)相关激酶1(SnRK1)是植物中一个保守的分子实体,可对能量胁迫(如长期黑暗、缺氧和光合作用抑制)做出反应。它的作用包括协调转录重编程,以提高植物在不同环境中的适应性。在本研究中,我们将深入研究 SnRK1 如何通过转录调控和直接磷酸化修饰影响拟南芥和其他作物物种的碳氮代谢。此外,我们还探讨了糖代谢产物对植物 SnRK1 活性的影响。我们还从哺乳动物和酵母系统中汲取灵感,研究了 SnRK1 复合物的组装机制。此外,我们还全面总结了 SnRK1 活性、自噬和病毒防御之间的相互作用。总之,我们的研究结果阐明了 SnRK1 复合物与植物碳/氮代谢之间错综复杂的分子联系。
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引用次数: 0
SMART CROPs 智能作物
Pub Date : 2023-12-15 DOI: 10.1016/j.ncrops.2023.12.002
Pengtao Wang , Zhi Li , Hao Li , Dale Zhang , Wei Wang , Xiaodong Xu , Qiguang Xie , Zhikun Duan , Xue Xia , Guanghui Guo , Aaqib Shaheen , Yun Zhou , Daojie Wang , Siyi Guo , Zhubing Hu , David W. Galbraith , Chun-Peng Song

Crops, because of their sessile lifestyle, inevitably experience dynamic environmental conditions, and their capacity to adapt to these changes is central to their growth, survival, and crop productivity. A crop that has been specifically engineered to be sensitive and rapidly tilt the balance between stress responses and growth regulation is defined as a “SMART CROP.” In examining the demands for crops with the highest yield and quality, efforts have been made to create SMART CROPs in the past decades. In this review, we highlight the mechanisms identified to enhance the properties of smart crops and describe technologies and features underlying the advancement of smart crops.

作物由于其无柄的生活方式,不可避免地要经历动态的环境条件,而它们适应这些变化的能力是其生长、存活和作物生产力的核心。一种经过专门设计,能够在压力反应和生长调节之间敏感而迅速地调整平衡的作物被定义为 "智能作物"。过去几十年来,人们在研究对最高产量和质量作物的需求时,一直在努力创造 SMART 作物。在这篇综述中,我们将重点介绍提高智能作物特性的机制,并描述智能作物发展的基础技术和特征。
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引用次数: 0
AI breeder: Genomic predictions for crop breeding 人工智能育种专家:作物育种的基因组预测
Pub Date : 2023-12-14 DOI: 10.1016/j.ncrops.2023.12.005
Wanjie Feng , Pengfei Gao , Xutong Wang

The integration of Artificial Intelligence (AI) into crop breeding represents a paradigm shift toward data-driven agricultural practices, aiming to enhance the efficiency and precision of crop improvement. In this perspective, we critically evaluate the impact of genomic prediction models like SoyDNGP (Soybean Deep Neural Genomic Prediction) on crop breeding. We discuss their current applications, challenges, and future potential. Addressing existing obstacles such as optimizing parent selection, accurately predicting the combined effects of multiple traits and genes, advancing explainable deep learning, and incorporating environmental factors, we propose practical approaches to overcome these challenges. Our insights aim to unlock the full potential of AI in genomic prediction, contributing to a comprehensive understanding of AI’s role in agriculture. We advocate for future research efforts that harness AI to cultivate sustainable and equitable food systems.

人工智能(AI)与作物育种的结合代表了向数据驱动型农业实践的范式转变,旨在提高作物改良的效率和精度。在这一视角下,我们严格评估了 SoyDNGP(大豆深度神经基因组预测)等基因组预测模型对作物育种的影响。我们讨论了这些模型的当前应用、挑战和未来潜力。针对现有的障碍,如优化亲本选择、准确预测多个性状和基因的综合效应、推进可解释的深度学习以及结合环境因素,我们提出了克服这些挑战的实用方法。我们的见解旨在释放人工智能在基因组预测方面的全部潜力,为全面了解人工智能在农业中的作用做出贡献。我们倡导未来的研究工作利用人工智能来培育可持续和公平的粮食系统。
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引用次数: 0
Inaugural Editorial: New Crops 就职社论:新作物
Pub Date : 2023-12-07 DOI: 10.1016/j.ncrops.2023.12.001
Zhubing Hu, Chun-peng Song
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引用次数: 0
Insights into plant–microbe interactions in the rhizosphere to promote sustainable agriculture in the new crops era 洞察根圈中植物与微生物的相互作用,促进新作物时代的可持续农业发展
Pub Date : 2023-11-18 DOI: 10.1016/j.ncrops.2023.11.002
Xiaoyu Shi , Yige Zhao , Mengwei Xu , Liya Ma , Jonathan M. Adams , Yu Shi

Microbes accompany plants throughout their entire lifecycles, from seeds to ripe fruits. Plant–microbe interactions have long been a focus of research in many subdisciplines, leading to thousands of articles that demonstrate the importance of these interactions in agriculture. Here, we review previous findings and discuss future directions and prospects for the application of plant–microbe interactions. These interactions are delineated from multiple perspectives: community composition, interaction pathways, influencing external and endogenous factors, methods and techniques for analysis, and potential targeted applications in agriculture. We propose that exploitation and utilization of core beneficial microbes, artificial microbial community assembly, and in situ regulation of microbiome function will become essential components of agricultural production in the future.

微生物伴随着植物从种子到成熟果实的整个生命周期。长期以来,植物与微生物的相互作用一直是许多分支学科的研究重点,数以千计的文章证明了这些相互作用在农业中的重要性。在此,我们回顾了以前的研究成果,并讨论了植物与微生物相互作用的未来应用方向和前景。我们从多个角度对这些相互作用进行了描述:群落组成、相互作用途径、影响因素、分析方法和技术,以及在农业中的潜在目标应用。我们认为,核心有益微生物的开发和利用、人工微生物群落组装以及微生物组功能的原位调控将成为未来农业生产的重要组成部分。
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引用次数: 0
The central role of transcription factors in bridging biotic and abiotic stress responses for plants’ resilience 连接生物和非生物胁迫--转录因子在植物趋同适应中的核心作用
Pub Date : 2023-11-18 DOI: 10.1016/j.ncrops.2023.11.003
Fei Liu , Mengwei Xi , Tong Liu , Xinyu Wu , Lingyue Ju , Daojie Wang

Throughout their life cycle, plants encounter a myriad of challenges arising from both abiotic and biotic stresses, which significantly impact crop yield and nutritional content. In natural ecological settings, plants often experience simultaneous exposure to multiple stresses, prompting intricate crosstalk interactions between different stress types. While current research predominantly addresses individual stress responses, the nuanced interplay among plants facing multiple stresses remains a subject requiring extensive exploration. Plants exposed to one type of stress have demonstrated the capacity to influence their responses to other stressors, indicating the presence of complex stress response networks shaped by their enduring coexistence with diverse environmental pressures. Within these networks, transcription factors emerge as pivotal regulators of stress-responsive genes, positioned as promising candidates for enhancing crop resilience. Notably, certain transcription factors have exhibited the ability to modulate plant tolerance to a spectrum of stresses, suggesting their potential role as convergence points within regulation networks responding to diverse stresses. Extensively studied transcription factors, including NAC, MYB, WRKY, bHLH, and ERF/DREB, are recognized for their crucial involvement in both abiotic and biotic stress responses. Beyond transcription factors, phytohormone signaling pathways governed by abscisic acid, salicylic acid, jasmonic acid, ethylene, and ROS are pivotal in orchestrating the crosstalk between biotic and abiotic stress signaling. This comprehensive review aims to encapsulate the current progress in understanding the intricate crosstalk dynamics underlying plant responses to abiotic and biotic stresses. Furthermore, it delves into the molecular mechanisms orchestrated by transcription factors to navigate the challenges posed by both abiotic and biotic stressors. The review also explores the involvement of transcription factors in regulating phytohormone signaling pathways, providing a holistic perspective on the multifaceted responses of plants to the complexities of their environmental stresses.

在植物的整个生命周期中,它们会遇到来自非生物和生物胁迫的无数挑战,这些胁迫会对作物产量和营养成分产生重大影响。在自然生态环境中,植物经常会同时受到多种胁迫,从而引发不同胁迫类型之间错综复杂的串扰相互作用。虽然目前的研究主要针对单个胁迫反应,但植物面对多种胁迫时的微妙相互作用仍是一个需要广泛探索的课题。暴露在一种胁迫下的植物已证明有能力影响它们对其他胁迫的反应,这表明存在着复杂的胁迫反应网络,这些网络是植物与不同环境压力长期共存而形成的。在这些网络中,转录因子成为胁迫响应基因的关键调控因子,有望成为提高作物抗逆性的候选因子。值得注意的是,某些转录因子具有调节植物对一系列胁迫的耐受性的能力,这表明它们在应对各种胁迫的调控网络中可能扮演着汇聚点的角色。已被广泛研究的转录因子包括 NAC、MYB、WRKY、bHLH 和 ERF/DREB,它们在非生物和生物胁迫响应中的重要作用已得到公认。除转录因子外,由脱落酸、水杨酸、茉莉酸、乙烯和 ROS 控制的植物激素信号通路在协调生物和非生物胁迫信号之间的相互影响方面也起着关键作用。本综述旨在总结目前在理解植物对非生物和生物胁迫反应的复杂串联动态方面取得的进展。此外,该综述还深入探讨了转录因子在应对非生物和生物胁迫所带来的挑战方面的分子机制。综述还探讨了转录因子参与调控植物激素信号通路的情况,为植物应对复杂环境胁迫的多方面反应提供了一个整体视角。
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引用次数: 0
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New Crops
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