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Organizing organelles: bacterial strategies for localizing intracellular compartments 组织细胞器:细菌定位细胞内区室的策略
IF 5.9 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2025-06-03 DOI: 10.1016/j.mib.2025.102614
Yein Ra, Arash Komeili
Bacteria contain multiple subcellular compartments that enable a variety of biochemical activities and behaviors. In many cases, the organization of these organelles is not random and is directly linked to their function. In the last decade, mechanistic studies have uncovered the machinery responsible for organelle positioning in some bacterial systems. Here, we review several such positioning systems with an emphasis on two arrangement patterns and the molecular mechanisms used to achieve them. We start with carboxysomes as an illustration of how a ParA/MinD ATPase system is used to equally distribute organelles in a cell. We follow with an example of an actin-like cytoskeletal system that links lipid-bounded magnetosome organelles into a continuous chain. We finally explore emerging models of bacterial organelle positioning and conclude with an outlook on the future opportunities in the study of bacterial organelle cell biology.
细菌包含多个亚细胞区室,使各种生物化学活动和行为成为可能。在许多情况下,这些细胞器的组织不是随机的,而是与它们的功能直接相关。在过去的十年中,机制研究已经揭示了在一些细菌系统中负责细胞器定位的机制。在这里,我们回顾了几种这样的定位系统,重点介绍了两种排列模式和用于实现它们的分子机制。我们以羧酸体为例,说明ParA/MinD atp酶系统如何在细胞中均匀分布细胞器。我们将以肌动蛋白样细胞骨架系统为例,该系统将脂质结合的磁小体细胞器连接成一个连续的链。最后探讨了细菌细胞器定位的新兴模型,并对细菌细胞器细胞生物学研究的未来机会进行了展望。
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引用次数: 0
A solution to the postantibiotic era: phages as precision medicine 后抗生素时代的解决方案:噬菌体作为精准医学
IF 5.9 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2025-05-30 DOI: 10.1016/j.mib.2025.102613
Landon J Getz , Pramalkumar H Patel , Karen L Maxwell
Antibiotic-resistant bacterial infections pose a significant global health challenge. Phage therapy provides a promising alternative to antibiotics that enables the specific targeting of pathogenic bacteria while preserving the healthy microbiome. Recent advances in genetic engineering, synthetic biology, and artificial intelligence have rekindled interest in phage therapy, as they move phages into the realm of precision medicine. Engineered phages can be customized to have a broader host range, encode counter-defenses that overcome bacterial immune systems, or express other proteins that modulate the bacterial host to their advantage. Innovations in artificial intelligence and machine learning promise to speed up the identification of optimal phage candidates and create tailored cocktails for individualized therapies — advances that will transform phage therapy and provide a solution to the antibiotic resistance crisis.
耐抗生素细菌感染对全球健康构成重大挑战。噬菌体治疗提供了一种很有前途的替代抗生素,能够在保持健康微生物群的同时特异性靶向致病菌。基因工程、合成生物学和人工智能的最新进展重新燃起了人们对噬菌体治疗的兴趣,因为它们将噬菌体带入了精准医学领域。工程噬菌体可以定制以具有更广泛的宿主范围,编码克服细菌免疫系统的反防御,或表达调节细菌宿主的其他蛋白质。人工智能和机器学习方面的创新有望加快识别最佳噬菌体候选者,并为个性化治疗创造量身定制的鸡尾酒——这些进步将改变噬菌体治疗,并为抗生素耐药性危机提供解决方案。
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引用次数: 0
Immunometabolism shapes chronic Staphylococcus aureus infection: insights from biofilm infection models 免疫代谢形成慢性金黄色葡萄球菌感染:从生物膜感染模型的见解
IF 5.9 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2025-05-22 DOI: 10.1016/j.mib.2025.102612
Adedayo E Ogunware, Tammy Kielian
Staphylococcus aureus is both a commensal bacterium and versatile pathogen, capable of transitioning from a benign colonizer to cause invasive disease. Its ability to form biofilm — a resilient, highly structured bacterial community — plays a key role in chronic infections, including those associated with medical implants and native tissues. The unique microenvironments of these biofilm niches create challenges for the host immune system, complicating pathogen clearance. Immunometabolism, the interplay between immune function and metabolic programming, plays a crucial role in dictating how the host combats S. aureus biofilms. Leukocytes undergo profound metabolic changes in response to biofilm, which can lead to dysregulated immune responses and persistent infection. This review explores recent insights defining the metabolic landscape of immune responses to S. aureus biofilm with a focus on two clinically relevant models, namely, craniotomy and prosthetic joint infection.
金黄色葡萄球菌既是一种共生细菌,也是一种多功能病原体,能够从良性定植者转变为引起侵袭性疾病。它形成生物膜的能力——一种有弹性的、高度结构化的细菌群落——在慢性感染中起着关键作用,包括那些与医疗植入物和天然组织相关的感染。这些生物膜生态位独特的微环境给宿主免疫系统带来了挑战,使病原体清除变得复杂。免疫代谢是免疫功能和代谢程序之间的相互作用,在决定宿主如何对抗金黄色葡萄球菌生物膜方面起着至关重要的作用。白细胞对生物膜的反应发生了深刻的代谢变化,这可能导致免疫反应失调和持续感染。这篇综述探讨了最近对金黄色葡萄球菌生物膜免疫反应代谢景观的定义,重点是两个临床相关模型,即开颅手术和假体关节感染。
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引用次数: 0
Dividing lines: compartmentalisation and division in Streptomyces 分界线:链霉菌的区隔化和分裂
IF 5.9 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2025-04-28 DOI: 10.1016/j.mib.2025.102611
Matthew J Bush , Bastien Casu , Susan Schlimpert
Bacteria display diverse strategies for cell division, exemplified by the multicellular life cycle of Streptomyces, a genus within the Actinomycetota phylum. Filamentous growing Streptomyces utilise two distinct division modes: during vegetative growth, nonconstricting cross-walls divide the mycelial network into long multinucleate compartments, while during reproductive growth, sporulation septation results in a ‘multiple division event’ that produces dozens of unigenomic spores that can separate and disperse in the environment.
The cellular mechanisms governing these two types of cell division in Streptomyces are inherently complex and present specific biological challenges that involve core cell division proteins and several genus-specific factors. This review highlights recent advances and open questions in our understanding of Streptomyces cell biology, with a focus on key cell division components and the interplay of the chromosome with the division machinery, enabling these organisms to grow as multicellular filaments and form unicellular spores.
细菌表现出不同的细胞分裂策略,例如放线菌门中的一个属链霉菌的多细胞生命周期。丝状生长链霉菌利用两种不同的分裂模式:在营养生长期间,非收缩的交叉壁将菌丝网络划分为长多核室,而在生殖生长期间,孢子分离导致“多重分裂事件”,产生数十个可以在环境中分离和分散的单一基因组孢子。在链霉菌中,控制这两种类型细胞分裂的细胞机制本质上是复杂的,并且存在涉及核心细胞分裂蛋白和几个属特异性因素的特定生物学挑战。本文综述了链霉菌细胞生物学的最新进展和有待解决的问题,重点介绍了关键的细胞分裂成分和染色体与分裂机制的相互作用,使这些生物能够生长成多细胞细丝和形成单细胞孢子。
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引用次数: 0
Moving beyond discovery science to a mechanistic understanding of human malaria 从发现科学到对人类疟疾的机械理解
IF 5.9 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2025-04-25 DOI: 10.1016/j.mib.2025.102610
Philip J Spence , Wiebke Nahrendorf , Florian A Bach
We’ve had more than a hundred years of discovery-based human malaria research that has made steady progress in observing disease processes (such as sequestration and vascular occlusion) as well as potential mechanisms of immunity. These observations now take centre stage as we enter an era of mass vaccination that will alter the natural history and epidemiology of malaria. We will need to understand how to protect individuals from breakthrough infections and populations from a shift in the mean age of exposure. It is therefore paramount that we start to directly test our long-standing hypotheses about the causes of disease and the pathways to protection. This is now made possible by improvements to complex cellular model systems as well as a sea-change in our attitude towards human intervention studies. Mechanistic insight is therefore no longer limited to animal models, which are always imperfect, but can be achieved in people and in vivo.
我们已经进行了一百多年的基于发现的人类疟疾研究,在观察疾病过程(如隔离和血管闭塞)以及潜在的免疫机制方面取得了稳步进展。随着我们进入将改变疟疾自然历史和流行病学的大规模疫苗接种时代,这些观察结果现在占据了中心位置。我们需要了解如何保护个人不受突破性感染的影响,以及如何保护人群不受平均暴露年龄变化的影响。因此,至关重要的是,我们开始直接测试我们长期以来关于疾病原因和保护途径的假设。现在,通过对复杂细胞模型系统的改进,以及我们对人类干预研究态度的巨大变化,这一点成为可能。因此,机械的洞察力不再局限于总是不完美的动物模型,而是可以在人体和体内实现。
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引用次数: 0
Long-chain fatty acids as nutrients for Gram-negative bacteria: stress, proliferation, and virulence 长链脂肪酸作为革兰氏阴性菌的营养物质:应激、增殖和毒力
IF 5.9 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2025-04-18 DOI: 10.1016/j.mib.2025.102609
Megha Shrivastava , Deeptodeep Roy , Rachna Chaba
Bacteria use host-derived long-chain fatty acids (LCFAs) as nutrients, signals, and membrane building blocks. Although the impact of LCFAs on the pathogenesis of Gram-negative bacteria via membrane remodeling or signaling is well-documented, their importance as a nutrient source for bacterial proliferation and virulence is an emerging research area with definitive studies reported only for Salmonella Typhimurium, Vibrio cholerae, and Pseudomonas aeruginosa. Moreover, recent studies in Escherichia coli have shown that LCFA degradation confers redox stress. Here, we review the known role of LCFAs as nutrients during infection in Gram-negative human pathogens and the association of LCFA degradation with redox stress and stress response mechanisms. We suggest that for understanding how, as nutrients, LCFAs influence host–bacterial interactions, it is necessary to resolve whether LCFA utilization also causes redox stress in pathogens, with defense mechanisms preconditioning them for challenging host environments, or if pathogens have pre-existing mechanisms that prevent LCFA-induced stress.
细菌利用宿主衍生的长链脂肪酸(LCFAs)作为营养物质、信号和膜构建块。虽然LCFAs通过膜重塑或信号传导对革兰氏阴性菌的发病机制的影响已被充分证明,但它们作为细菌增殖和毒力的营养来源的重要性是一个新兴的研究领域,仅报道了针对鼠伤寒沙门氏菌、霍乱弧菌和铜绿假单胞菌的明确研究。此外,最近在大肠杆菌中的研究表明,LCFA降解会导致氧化还原应激。在这里,我们回顾了已知的在革兰氏阴性人类病原体感染过程中LCFA作为营养物质的作用,以及LCFA降解与氧化还原应激和应激反应机制的关系。我们建议,为了理解LCFA作为营养物质如何影响宿主与细菌的相互作用,有必要解决LCFA的利用是否也会引起病原体的氧化还原应激,通过防御机制使它们预先适应宿主环境,或者病原体是否有预先存在的机制来阻止LCFA诱导的应激。
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引用次数: 0
Pathogen adaptation to lung metabolites 病原体对肺部代谢物的适应
IF 5.9 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2025-04-02 DOI: 10.1016/j.mib.2025.102608
Gaurav Kumar Lohia, Sebastián A Riquelme
Opportunistic pathogens like Pseudomonas aeruginosa and Staphylococcus aureus rapidly adapt to the dynamic metabolic landscape of the respiratory mucosa during infection. Host phagocytes recognize these pathogens and trigger metabolic reprogramming, releasing immunometabolites such as succinate and itaconate. P. aeruginosa preferentially consumes succinate as a carbon source to enhance planktonic growth. In response to itaconate-induced membrane stress, it forms protective biofilms, allowing bacterial survival despite host defenses. Additionally, host ketone bodies support microbial communities that are less immunostimulatory and better tolerated by the lung. Similarly, S. aureus responds to itaconate by forming biofilms, aiding colonization in glucose-limited airways. In this milieu, S. aureus consumes proline, linking its survival with the metabolic activity of proline-producing fibroblasts. Here, we will review the competence of both P. aeruginosa and S. aureus to hijack host metabolic pathways, underscoring pathogen metabolic plasticity as an essential strategy to thrive in the human lung.
机会致病菌如铜绿假单胞菌和金黄色葡萄球菌在感染过程中迅速适应呼吸道黏膜的动态代谢景观。宿主吞噬细胞识别这些病原体并触发代谢重编程,释放免疫代谢物如琥珀酸盐和衣康酸盐。铜绿假单胞菌优先消耗琥珀酸盐作为碳源,以促进浮游生物的生长。为了应对itaconate诱导的膜应激,它形成保护性生物膜,允许细菌在宿主防御下存活。此外,宿主酮体支持的微生物群落免疫刺激性较小,肺部耐受性较好。同样,金黄色葡萄球菌对衣康酸的反应是形成生物膜,帮助在葡萄糖受限的气道中定植。在这种环境下,金黄色葡萄球菌消耗脯氨酸,将其生存与产生脯氨酸的成纤维细胞的代谢活性联系起来。在这里,我们将回顾铜绿假单胞菌和金黄色葡萄球菌劫持宿主代谢途径的能力,强调病原体代谢可塑性是人类肺部茁壮成长的重要策略。
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引用次数: 0
The role of microbial succinate in the pathophysiology of inflammatory bowel disease: mechanisms and therapeutic potential 微生物琥珀酸盐在炎症性肠病病理生理中的作用:机制和治疗潜力
IF 5.9 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2025-03-24 DOI: 10.1016/j.mib.2025.102599
Sonia Fernández-Veledo , Carme Grau-Bové , Sara Notararigo , Isabel Huber-Ruano
Inflammatory bowel disease (IBD) is a chronic immune-mediated condition linked to gut microbiota dysbiosis and altered production of bacterial metabolites, including succinate, which is also a key intermediate in human mitochondrial energy metabolism in human cells. Succinate levels in the gut are influenced by microbial community dynamics and cross-feeding interactions, highlighting its dual metabolic and ecological importance. Extracellular succinate acts as a key signaling metabolite linking microbial metabolism to host physiology, with transient rises supporting metabolic regulation but chronic elevations contributing to metabolic disorders and disease progression. Succinate signals through its cognate receptor SUCNR1, which mediates adaptive metabolic responses under normal conditions but drives inflammation and fibrosis when dysregulated.
IBD patients display a dysbiotic gut microbiota characterized by an increased prevalence of succinate-producing bacteria, contributing to elevated succinate levels in the gut and circulation. This imbalance drives inflammation, worsens IBD severity, and contributes to complications like Clostridioides difficile infection and fibrosis. Emerging evidence highlights the potential of intestinal and systemic succinate levels as indicators of microbial dysbiosis, with a bidirectional relationship between microbial composition and succinate metabolism. Understanding the factors influencing succinate levels and their interaction with dysbiosis shows promise in the development of therapeutic strategies to restore microbial balance. Approaches such as dietary fiber enrichment, prebiotics, and probiotics to enhance succinate-consuming bacteria, combined with targeted modulation of succinate pathways (e.g. SDH inhibitors, SUCNR1 antagonists), hold promise for mitigating inflammation and improving gut health in IBD.
炎症性肠病(IBD)是一种由免疫介导的慢性疾病,与肠道微生物群失调和细菌代谢产物(包括琥珀酸)的产生改变有关。琥珀酸盐在肠道中的含量受微生物群落动态和交叉进食相互作用的影响,凸显了其在代谢和生态方面的双重重要性。细胞外琥珀酸盐是连接微生物代谢和宿主生理的关键信号代谢物,瞬时升高支持代谢调节,而长期升高则导致代谢紊乱和疾病进展。琥珀酸通过其同源受体 SUCNR1 发出信号,该受体在正常情况下可介导适应性代谢反应,但在调节失调时则会导致炎症和纤维化。IBD 患者的肠道微生物群表现为菌群失调,其特点是产琥珀酸细菌的数量增加,导致肠道和血液循环中的琥珀酸水平升高。这种失衡会引发炎症,加重 IBD 的严重程度,并导致艰难梭菌感染和纤维化等并发症。新出现的证据强调,肠道和全身的琥珀酸水平可能是微生物菌群失调的指标,微生物组成和琥珀酸代谢之间存在双向关系。了解影响琥珀酸含量的因素及其与菌群失调之间的相互作用,有助于制定恢复微生物平衡的治疗策略。富含膳食纤维、益生元和益生菌等方法可提高琥珀酸消耗菌的数量,结合琥珀酸途径的靶向调节(如 SDH 抑制剂、SUCNR1 拮抗剂),有望减轻炎症并改善 IBD 患者的肠道健康。
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引用次数: 0
Immune evasion runs in the family: two surface protein families of Plasmodium falciparum–infected erythrocytes 免疫逃避在家族中运行:恶性疟原虫感染红细胞的两个表面蛋白家族。
IF 5.9 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2025-03-19 DOI: 10.1016/j.mib.2025.102598
Samuel G Chamberlain , Shiroh Iwanaga , Matthew K Higgins
Two protein families are found on the surfaces of erythrocytes infected with Plasmodium falciparum, a causative agent of deadly malaria. PfEMP1 are tethers binding endothelial receptors and holding infected erythrocytes to tissue and blood vessel surfaces, away from splenic clearance. RIFINs interact with immune receptors on natural killer cells, suppressing infected erythrocyte destruction. Both have expanded into families of diverse members to allow antigenic variation but retain surfaces of conserved chemistry and shape to bind human receptors. Recently discovered broadly inhibitory antibodies target one such surface on many EPCR-binding PfEMP1. Remarkable antibodies take this one step further, directly incorporating ectodomains of immune receptors into their loops, allowing RIFIN recognition. Finally, some RIFINs are targets of activating killer immune receptors, helping natural killer cells destroy infected erythrocytes. Studies of these two families therefore reveal a snapshot of the battle between this ancient parasite and the immune system of its human host.
在感染恶性疟原虫(致命疟疾的病原体)的红细胞表面发现了两个蛋白质家族。PfEMP1是结合内皮受体的栓系物,将受感染的红细胞固定在组织和血管表面,使其远离脾清除。RIFINs与自然杀伤细胞上的免疫受体相互作用,抑制受感染的红细胞破坏。两者都扩展到不同成员的家族中,以允许抗原变异,但保留保守的化学表面和形状,以结合人类受体。最近发现的广泛抑制抗体在许多epcr结合的PfEMP1上靶向一个这样的表面。非凡的抗体更进一步,直接将免疫受体的外环结合到它们的循环中,允许RIFIN识别。最后,一些RIFINs是激活杀伤免疫受体的目标,帮助自然杀伤细胞破坏感染的红细胞。因此,对这两个家族的研究揭示了这种古老寄生虫与其人类宿主免疫系统之间斗争的快照。
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引用次数: 0
How pathogens drive adipose tissue loss in the host 病原体是如何导致宿主脂肪组织流失的
IF 5.9 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2025-03-12 DOI: 10.1016/j.mib.2025.102597
Abdulbasit Amin , David V Ferreira , Luisa M Figueiredo
Weight loss is a hallmark of many infections, including those caused by bacteria, fungi and parasites. This loss is often attributed to infection-induced anorexia and the need to mobilise energy from internal sources to cope with the pathogens. Weight loss during infection results from a significant reduction of muscle and fat mass, two organs that together account for approximately 60% of body mass in the healthy state. While muscle wasting is a well-documented aspect of infection-related weight loss, adipose tissue loss via lipolysis also plays a critical role and can determine disease outcomes. This review explores the regulators of adipose tissue depletion via excessive lipolysis during infection, the probable mechanisms, and the potential consequences for host survival and pathogen fitness.
体重减轻是许多感染的标志,包括由细菌、真菌和寄生虫引起的感染。这种损失通常归因于感染引起的厌食症和需要从内部来源调动能量来应对病原体。感染期间的体重减轻是由于肌肉和脂肪量的显著减少,这两个器官在健康状态下约占体重的60%。虽然肌肉萎缩是感染相关体重减轻的一个有充分证据的方面,但脂肪分解导致的脂肪组织损失也起着关键作用,可以决定疾病的结果。这篇综述探讨了感染过程中脂肪过度分解导致脂肪组织消耗的调节因子,可能的机制,以及对宿主生存和病原体适应性的潜在影响。
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引用次数: 0
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Current opinion in microbiology
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