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Editorial Board: Electrophoresis 9–10'25 编辑委员会:电泳9-10 '25
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-07-18 DOI: 10.1002/elps.70010
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引用次数: 0
Sample Preparation 2024 样品制备2024
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-07-18 DOI: 10.1002/elps.70003
Carlos D. Garcia, Pavel Kubáň, Petr Kubáň
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引用次数: 0
Sialylation Impacts Separation of a Biotherapeutic by Capillary Gel Electrophoresis 唾液化对毛细管凝胶电泳分离生物治疗药物的影响。
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-07-08 DOI: 10.1002/elps.70006
Jeremy D. Osko, Zhengqi Zhang, Andrew Semple, Karen Bern, Julie C. McIntosh, Xiaoyu Yang, Thomas P. Niedringhaus

Monitoring of critical quality attributes (CQAs) is essential for the development of biotherapeutics. One example of a CQA is molecular fragmentation, which is often analyzed by capillary gel electrophoresis with sodium dodecyl sulfate (SDS). Sialylation is a post-translational modification and form of glycosylation that can impact purity profiles of biotherapeutics, resulting in complex structure elucidation. Here, we studied the heterogeneity of Biotherapeutic 1 as a result of O-linked glycosylation with sialylation. Biotherapeutic 1 displayed a second unidentified peak in SDS–capillary gel electrophoresis (SDS-CGE) under reducing conditions that directly impacted peak integration practices and, therefore, method validation. The two peaks were highly reproducible in SDS-CGE as well as complementary LabChip experiments. The apparent molecular weights were calculated using molecular weight ladders with known protein standards. A combination of ion exchange chromatography (IEX), hydrophilic interaction chromatography mass spectrometry (HILIC-MS), and ultra-high-performance size exclusion chromatography (UP-SEC) were used to identify O-linked glycosylation as responsible for the production of reduced peak 1 and reduced peak 2 in SDS-CGE. Specifically, reduced peak 2 contained sialylation that was not observed in reduced peak 1, resulting in two distinct migration times due to impacts in SDS binding efficacy. Enzymatic removal of the sialic acids simplified the heterogeneity into a single uniform peak (reduced peak 1). This work and methodologies highlight the impact a single O-linked glycan can have on SDS-CGE and is applicable to analyzing future biotherapeutics involving complex structure profiles resulting from sialylation.

关键质量属性(cqa)的监测对生物治疗药物的开发至关重要。CQA的一个例子是分子碎片,通常用十二烷基硫酸钠(SDS)进行毛细管凝胶电泳分析。唾液酰化是一种翻译后修饰和糖基化形式,可以影响生物治疗药物的纯度谱,导致复杂的结构解析。在这里,我们研究了Biotherapeutic 1由于o链糖基化和唾液化的异质性。在还原条件下,生物疗法1在sds -毛细管凝胶电泳(SDS-CGE)中显示了第二个未识别的峰,这直接影响了峰整合实践,因此影响了方法验证。这两个峰在SDS-CGE和LabChip互补实验中具有很高的重现性。用已知蛋白质标准的分子量阶梯计算表观分子量。结合离子交换色谱法(IEX)、亲水性相互作用色谱质谱法(HILIC-MS)和超高性能尺寸排除色谱法(UP-SEC)鉴定了o -链糖基化是SDS-CGE中产生还原峰1和还原峰2的原因。具体来说,峰2中含有在峰1中未观察到的唾液酰化,由于影响SDS结合效果,导致两次不同的迁移时间。酶解唾液酸将异质性简化为一个统一的峰(还原峰1)。这项工作和方法强调了单个o链聚糖对SDS-CGE的影响,并适用于分析未来涉及唾液化产生的复杂结构谱的生物治疗药物。
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引用次数: 0
An Optimized, CE-Compatible, Targeted NGS-Based SSR Genotyping Method Using Primer-Anchored Alignment 基于引物锚定比对的优化、ce兼容、靶向的ngs SSR基因分型方法
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-07-04 DOI: 10.1002/elps.70007
Kai Liu, Qinghui Meng, Tianlun Zheng, Nan Xie, Fan Zhou

Microsatellites (SSRs) are highly polymorphic DNA sequences widely used in genetic research, including parentage assignment. Traditional SSR analysis relies on capillary electrophoresis (CE), which is time-consuming and has limited capacity. Next-generation sequencing (NGS) offers a high-throughput and cost-effective alternative, but existing NGS-based SSR genotyping methods produce results that are incompatible with CE data, increasing the risk of Mendelian inheritance mismatches. This study presents an optimized, targeted, NGS-based approach for SSR genotyping that prioritizes consistency with CE-based results. We optimized SSRseq, a targeted NGS-based SSR genotyping method, by (1) using primer flanking sequences as anchors for BLAST (Basic Local Alignment Search Tool)-based read alignment to reference SSRs, enabling the utilization of both overlapping and nonoverlapping paired-end reads; (2) inferring motif repeat counts from aligned read lengths, tolerating imperfections within the microsatellite repeat array (MRA); and (3) dynamically adjusting motif definition when discrepancies arose between expected and observed MRAs. We evaluated our optimized SSRseq against the original SSRseq and CE using four 10-plex SSR panels for parentage assignment in Largemouth black bass (Micropterus salmoides). The optimized SSRseq substantially improved parentage assignment accuracy. Multiple combinations of two or more optimized SSRseq panels achieved an assignment rate of 1.000 and an accuracy rate of 0.950, whereas the original SSRseq's highest accuracy was 0.900, requiring all four panels. The optimized method also showed high concordance with CE genotyping at several tested loci. This optimized SSRseq approach provides a robust, efficient, and cost-effective tool, leveraging NGS for accurate SSR genotyping in parentage assignment and other genetic analyses while minimizing Mendelian inheritance mismatches.

微卫星(SSRs)是一种高度多态性的DNA序列,广泛应用于遗传研究,包括亲子鉴定。传统的SSR分析依赖于毛细管电泳(CE),既耗时又容量有限。下一代测序(NGS)提供了一种高通量和低成本的替代方法,但现有的基于NGS的SSR基因分型方法产生的结果与CE数据不兼容,增加了孟德尔遗传错配的风险。本研究提出了一种优化的、有针对性的、基于ngs的SSR基因分型方法,该方法优先考虑与基于ce的结果的一致性。我们对基于ngs的SSR基因分型方法SSRseq进行了优化:(1)利用引物侧翼序列作为BLAST (Basic Local Alignment Search Tool) reads比对的锚点,同时利用重叠和非重叠的对端reads;(2)从对齐的读取长度推断基序重复计数,容忍微卫星重复阵列(MRA)中的缺陷;(3)当预期mra与实际mra出现差异时,动态调整基序定义。将优化后的SSR序列与原始SSR序列和CE进行对比,利用4个10重SSR标记对大口黑鲈(Micropterus salmoides)进行鉴定。优化后的SSRseq显著提高了亲子鉴定的准确性。两个或多个优化SSRseq面板的多重组合获得了1.000的分配率和0.950的准确率,而原始SSRseq的最高准确率为0.900,需要所有四个面板。优化后的方法在多个检测位点上与CE基因分型具有较高的一致性。这种优化的SSRseq方法提供了一种强大、高效和经济的工具,利用NGS在亲代分配和其他遗传分析中准确地进行SSR基因分型,同时最大限度地减少孟德尔遗传错配。
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引用次数: 0
Capillary Electrophoresis Can Detect the Simultaneous Presence of Hairpins and Self-Dimers in Non-Symmetric, Single-Stranded DNA Oligomers 毛细管电泳可以检测非对称单链DNA低聚物中同时存在的发夹和自二聚体。
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-07-02 DOI: 10.1002/elps.70005
Earle Stellwagen, Nancy C. Stellwagen

Free solution capillary electrophoresis (CE) has been used to show that non-symmetric, single-stranded DNA oligomers containing 26 nucleotides can exhibit peaks in the electropherograms that correspond to the simultaneous presence of self-dimers and hairpins in the solution. The overlapping hairpin and self-dimer peaks were observed at temperatures close to 15°C in background electrolytes containing at least 80 mM Na+ ions. With increasing temperature, the self-dimers were converted first into hairpins and then into random coils at still higher temperatures. The results suggest that hairpins can be an intermediary step in the pathway between DNA duplexes and single-strands.

自由溶液毛细管电泳(CE)显示,含有26个核苷酸的非对称单链DNA低聚物在电泳图中显示出峰,对应于溶液中同时存在自二聚体和发夹。在温度接近15°C时,在含有至少80 mM Na+离子的背景电解质中观察到重叠的发夹峰和自二聚体峰。随着温度的升高,自二聚体首先转变为发夹,然后在更高的温度下转变为随机线圈。结果表明,发夹可能是DNA双链和单链之间途径的中间步骤。
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引用次数: 0
Universal Study Design for Instrument Changes in Pharmaceutical Release Analytics 药物释放分析中仪器变化的通用研究设计。
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-25 DOI: 10.1002/elps.70004
Anne B. Ries, Maximilian N. Merkel, Kristina Coßmann, Marina Paul, Robin Grunwald, Daniel Klemmer, Franziska Hübner, Sabine Eggensperger, Frederik T. Weiß

In pharmaceutical quality control (QC), analytical methods need to maintain release analytics over decades. Over a product's lifecycle, vendors may update instrument hardware and/or software, or a switch between vendors may become necessary upon discontinuation of an instrument. Both situations pose a challenge to pharmaceutical QC.We designed an efficient instrument comparability study to gain a comprehensive understanding of potential performance differences between instruments and therefore rationalize the risk assessment and decision process for a path forward. The results may either point out whether a full or partial re-validation is necessary or whether a science-based update can be pursued based on the data generated in the study. The study design is universally applicable to a substantial range of release analytical methods. In a straightforward setup of two experiments with the new instrument, a statistically meaningful data set is generated for comparison with available historical or validation data of the original instrument. In a Good Manufacturing Practice (GMP) environment, we implemented the study design in a benchmark study comparing the ICE3 and Maurice C imaged capillary isoelectric focusing (icIEF) instruments. The core-study confirmed equal or better performance of the Maurice C in all parameters and serves as a basis for seamless continuation of release icIEF measurements on Maurice C.

在药品质量控制(QC)中,分析方法需要保持释放分析数十年。在产品的生命周期中,供应商可能会更新仪器硬件和/或软件,或者在仪器停产时可能需要在供应商之间切换。这两种情况都对药品质量控制提出了挑战。我们设计了一项有效的工具可比性研究,以全面了解工具之间潜在的性能差异,从而使风险评估和决策过程合理化。结果可能会指出是否需要完全或部分重新验证,或者是否可以根据研究中产生的数据进行基于科学的更新。该研究设计普遍适用于大量的释放分析方法。在使用新仪器进行的两个实验的简单设置中,生成具有统计意义的数据集,以便与原始仪器的可用历史或验证数据进行比较。在良好生产规范(GMP)的环境下,我们在比较ICE3和Maurice C成像毛细管等电聚焦(icIEF)仪器的基准研究中实施了研究设计。核心研究证实了Maurice C在所有参数上的相同或更好的性能,并作为对Maurice C的释放icIEF测量的无缝延续的基础。
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引用次数: 0
Peak Integration of Electropherograms in GMP and Research Labs: Navigating Increased Scrutiny Amid Data Integrity Audits and Inspections 在GMP和研究实验室中峰值集成的电泳图:在数据完整性审计和检查中导航增加审查。
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-19 DOI: 10.1002/elps.70002
Timothy Blanc, Hermann Wätzig, Cari Sänger - van de Griend

Capillary electrophoresis (CE) often offers superior separation relative to chromatography for macromolecules like monoclonal antibodies (mAbs), a major pharmaceutical class. However, electropherogram baselines pose challenges that traditional chromatography algorithms cannot address, requiring complex integration processes. Integration in good manufacturing practice (GMP) laboratories is critically important and has become a focus of data integrity-centric regulatory inspections. Electropherogram integration challenges, the increased use of CE, data systems developed for chromatograms rather than electropherograms, and the increased regulatory scrutiny call for a resolution. This necessity also extends to R&D, clinical, and academic labs. This review examines authoritative sources such as pharmacopoeias, World Health Organization (WHO), Parenteral Drug Association (PDA), and scientific literature. However, none address electropherogram integration. These sources concur that companies should develop integration policies and SOPs. Training programs must ensure analysts are proficient in integration techniques and reviewers are appropriately qualified to assess integrations. Integration parameters must be captured, including slope sensitivity, smoothing factors, and timed events like peak start and stop and baseline correction. Analytical procedures (APs) should include illustrations that define proper integration. Although automatic integration is preferred for its efficiency and objectivity, it is not always accurate. Therefore, manual integration should be permitted under specific conditions, with all settings and iterations documented, justified, and reviewed. Industry collaboration is proposed to create practical integration guidelines specifically for CE.

毛细管电泳(CE)对于单克隆抗体(mab)等大分子(主要的药物类别)通常提供比色谱法更好的分离。然而,电泳基线带来了传统色谱算法无法解决的挑战,需要复杂的集成过程。良好生产规范(GMP)实验室的整合至关重要,并已成为以数据完整性为中心的监管检查的焦点。电泳图集成的挑战、CE使用的增加、为色谱图而不是电泳图开发的数据系统以及监管审查的增加都需要解决。这种必要性也延伸到研发、临床和学术实验室。本综述查阅了权威来源,如药典、世界卫生组织(WHO)、肠外用药协会(PDA)和科学文献。然而,没有一个涉及到电泳整合。这些来源一致认为,公司应该制定集成政策和sop。培训计划必须确保分析人员精通集成技术,并且审查人员有适当的资格来评估集成。必须捕获集成参数,包括斜率灵敏度、平滑因子和时间事件,如峰值启动和停止以及基线校正。分析程序(ap)应该包括定义适当集成的说明。尽管自动集成因其效率和客观性而受到青睐,但它并不总是准确的。因此,在特定的条件下应该允许手工集成,所有的设置和迭代都要记录、证明和审查。建议进行行业协作,专门为CE创建实用的集成指南。
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引用次数: 0
Insights Into the Enantioseparation of Polyhalogenated 4,4′-Bipyridines With a Cellulose Tris(3,5-Dimethylphenylcarbamate)-Based Chiral Column by Using Supercritical Fluid Chromatography 超临界流体色谱法纤维素三(3,5-二甲基苯基氨基甲酸酯)手性柱分离多卤化4,4′-联吡啶对映体研究
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-31 DOI: 10.1002/elps.8156
Emmanuelle Lipka, Roberto Dallocchio, Barbara Sechi, Mikheil Rukhaia, Giorgi Jibuti, Bezhan Chankvetadze, Victor Mamane, Paola Peluso

In the last decade, by integrating experimental and computational analyses, it was demonstrated that halogen bond (HaB) may contribute to binding and enantiorecognition mechanisms underlying the HPLC enantioseparation of halogenated chiral analytes by using cellulose tris(3,5-dimethylphenylcarbamate) (CDMPC)-based chiral columns and n-hexane-based mixtures as mobile phases. When used as a pivotal component of the mobile phase in supercritical fluid chromatography (SFC), carbon dioxide is often considered as an n-hexane-like nonpolar solvent because of its low dielectric constant and zero molecular dipole moment. On the other hand, carbon dioxide may also serve as hydrogen bond (HB) and HaB acceptor due to the presence of nonbonding electrons on the two oxygen atoms, interacting with analyte enantiomers, chiral selectors, and co-solvents. On this basis, we report herein the results of a study aiming at evaluating the impact of using carbon dioxide in SFC in place of n-hexane in HPLC on halogen-dependent enantioseparations by using atropisomeric halogenated 4,4′-bipyridines as analytes and Lux Cellulose-1 as CDMPC-based chiral column. The experimental investigation was complemented by a computational study performed using (a) quantum mechanics (QM) calculations to map and quantify noncovalent interactions possibly underlying the contact of the analytes with carbon dioxide and with the distinctive pendant groups of the CDMPC and (b) molecular dynamics (MD) simulations to visualize noncovalent interactions acting in the analyte 1/CDMPC chromatographic system in different media. The use of MD simulations to model enantioseparations performed in carbon dioxide-based media was not reported in the literature so far.

在过去的十年中,通过实验和计算分析的结合,证明了以纤维素三(3,5-二甲基苯基氨基甲酸酯)(CDMPC)为基础的手性柱和以正己烷为流动相的混合物为流动相,卤素键(HaB)可能有助于卤化手性分析物的高效液相色谱对映分离的结合和对映体识别机制。当作为超临界流体色谱(SFC)流动相的关键组分时,二氧化碳通常被认为是一种类似正己烷的非极性溶剂,因为它具有低介电常数和零分子偶极矩。另一方面,由于两个氧原子上存在非键电子,二氧化碳也可以作为氢键(HB)和HaB受体,与分析物对映体、手性选择器和共溶剂相互作用。在此基础上,我们报告了一项研究的结果,旨在评估二氧化碳在SFC中代替正己烷在HPLC中对卤素依赖的对映体分离的影响,该研究以atro异构卤代4,4'-联吡啶为分析物,以Lux Cellulose-1为cdmpc基手性柱。实验研究还通过计算研究进行了补充,使用(a)量子力学(QM)计算来绘制和量化分析物与二氧化碳和CDMPC的独特悬垂基团接触可能存在的非共价相互作用,以及(b)分子动力学(MD)模拟来可视化不同介质中分析物1/CDMPC色谱系统中的非共价相互作用。迄今为止,在文献中尚未报道使用MD模拟在二氧化碳基介质中进行的对映体分离。
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引用次数: 0
WITHDRAWAL: Quantifying Critical Quality Attributes of Protein Therapeutics by Sodium Dodecyl Sulfate–Capillary Gel Electrophoresis With Native Fluorescence Detection 十二烷基硫酸钠-毛细管凝胶电泳与天然荧光检测定量蛋白质治疗药物的关键质量属性。
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-30 DOI: 10.1002/elps.8154

Withdrawal: Z. Zhu, ‘Quantifying Critical Quality Attributes of Protein Therapeutics by Sodium Dodecyl Sulfate–Capillary Gel Electrophoresis With Native Fluorescence Detection,’ Electrophoresis (Early View): https://doi.org/10.1002/elps.8154.

The above article, published online 30 May 2025 on Wiley Online Library (wileyonlinelibrary.com) has been withdrawn by agreement between the author, Zaifang Zhu, the Editors in Chief Hervé Cottet, Hermann Wätzig, Carlos Garcia, and Wiley-VCH GmbH, Weinheim. The withdrawal has been agreed since the article was published in error before the licence agreement had been signed.

在生物制药行业,十二烷基硫酸钠-毛细管凝胶电泳(SDS-CGE)检测通常用于评估治疗关键质量属性(cqa)。传统的SDS-CGE检测方法,如紫外(UV)吸光度和激光诱导荧光(LIF),被广泛使用,但存在局限性。一种原生荧光检测(NFD)方案在不需要样品衍生化的情况下提高了灵敏度,减少了凝胶基质的干扰,SDS-CGE-NFD检测在单克隆抗体(mab)的绝对定量方面具有很高的精度和准确性。在这项工作中,我们评估了SDS-CGE-NFD对蛋白质治疗中cqa定量的适用性,这通常是相对的而不是绝对的。将NFD与紫外吸光度和LIF检测在SDS-CGE中定量蛋白质治疗药物的cqa进行比较。对3批NIST单克隆抗体(NISTmAb)进行SDS-CGE检测,并结合NFD、UV和LIF检测,比较总片段的相对丰度,发现相似。NFD分析测得的丰度范围为1.77%-2.00%,而紫外吸收法测得的丰度范围为1.53%-1.78%,LIF测得的丰度范围为1.63%-1.86%。聚集体没有被紫外吸收光谱识别出来,但聚集体明显,NFD和LIF的相对丰度分别为0.38% ~ 0.40%和0.35% ~ 0.40%。在还原条件下,三种检测方法在重链上的糖基化位点占用率均在99.30% ~ 99.33%之间。三种检测模式的比较结果表明,SDS-CGE-NFD适用于定量蛋白质治疗药物的cqa。SDS-CGE-NFD工作流程成功地应用于分析两种商业蛋白质疗法,一种双特异性单抗(Emicizumab)为~ 146 kDa,一种fc融合蛋白为~ 63 kDa (Dulaglutide)。
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引用次数: 0
Rapid Separation and Analysis of Exosomes in Milk Sample by on-Line Nano-Liquid Chromatography 在线纳米液相色谱法快速分离和分析牛奶样品中的外泌体。
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-21 DOI: 10.1002/elps.8155
Cemil Aydoğan, Zeynep Günyel, Sarah Alharthi, Hakiye Aslan, İbrahim Y. Erdoğan, Ziad El Rassi

Exosomes are very small vesicles of 30–150 nm average particle size and hold great potential in new therapeutic applications. The aim of this study is to develop a new method for the isolation and analysis of exosomes in milk via hydrophobic interaction chromatography (HIC), including salting-out process in nano-liquid chromatography (nano-LC). On the basis of this approach, a trap column combined with graphene oxide (GO)-based monolithic nano-column was used for on-line analysis of exosomes in nano-LC. The monolith was prepared by an in situ polymerization of butyl methacrylate (BMA), ethylene glycol dimethacrylate (EDMA), and methacryloyl graphene oxide nanoparticles (MGONPs). The final solution was introduced into a fused silica capillary with a 50 µm i.d. for polymerization. After preparation, the column was further modified with dimethyloctadecylchlorosilane (DODCS) to increase its hydrophobicity. The characterization of monolith was performed using scanning electron microscopy (SEM) and chromatographic examination. The final monolith was applied for the isolation and analysis of exosomes in milk via HIC-nano-LC. Nanoparticle tracking analysis (NTA), SEM, and Fourier transform-infrared (FT-IR) for the tandem characterization of milk exosomes were used, whereas step gradient elution was employed for HIC. The results demonstrated good ability to isolate exosomes from milk with three dilution factors, and a loading capacity of 7.3 ± 02 × 1011 exosomes could be obtained using the on-line nano-LC system. The developed method holds many advantages and may be adapted for the isolation of exosomes from a diverse range of media.

外泌体是一种平均粒径为30- 150nm的小囊泡,在新的治疗应用中具有很大的潜力。本研究的目的是建立一种利用疏水相互作用色谱(HIC)分离和分析牛奶中外泌体的新方法,包括纳米液相色谱(nano-LC)中的盐析工艺。在此基础上,利用基于氧化石墨烯(GO)的单片纳米柱结合陷阱柱对纳米lc中外泌体进行在线分析。采用原位聚合法制备了甲基丙烯酸丁酯(BMA)、乙二醇二甲基丙烯酸酯(EDMA)和甲基丙烯酰氧化石墨烯纳米颗粒(MGONPs)。将最终溶液引入直径为50µm的熔融石英毛细管中进行聚合。制备完成后,用二甲基十八烷基氯硅烷(DODCS)对柱进行进一步修饰,以提高其疏水性。采用扫描电镜(SEM)和色谱法对其进行表征。最后的整体应用于HIC-nano-LC分离和分析牛奶中的外泌体。采用纳米颗粒跟踪分析(NTA)、扫描电镜(SEM)和傅里叶变换红外(FT-IR)对乳外泌体进行串联表征,而HIC采用阶梯梯度洗脱。结果表明,在三种稀释倍数下,乳中外泌体的分离效果良好,在线纳米- lc系统可获得7.3±02 × 1011个外泌体。所开发的方法具有许多优点,可适用于从各种培养基中分离外泌体。
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引用次数: 0
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