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Analyses of Omicron genomes from India reveal BA.2 as a more transmissible variant 来自印度的组粒基因组分析显示BA.2是一种更具传染性的变异
Pub Date : 2022-04-27 DOI: 10.1101/2022.04.25.22274272
A. Atkulwar, A. Rehman, Y. Imaan, M. Baig
This is the first study on omicron genomes from India to focus on phylodynamics and phylogenomics trait to provide an insight into the evolution of omicron variants. We analyzed 564 genomes deposited to GISAID database from various states of India. Pangolin COVID-19 Lineage Assigner tool was used to determine lineage assignment of all retrieved genomes. A Maximum likelihood (MLE) tree construction further confirms the separation of genomes into two distinct clades, BA. 1. and BA. 2. A very high reproduction number (R0) of 2.445 was estimated for the lineage BA.2. The highest R0 value in Telangana confirms the prevalence of lineage BA.2 in the state. Construction of the Reduced Median (RM) network shows evolution of some autochthonous haplogroups and haplotypes, which further supports the rapid evolution of omicron as compared to its previous variants. Phylogenomic analyses using maximum likelihood (ML) and RM show the potential for the emergence of sub-sublineages and novel haplogroups respectively. Due to the recombinant property and high transmissibility of omicron virus, we suggest continuous and more widespread genome sequencing in all states of India to track evolution of SARS-CoV-2 in real time.
这是第一次对印度组粒基因组进行系统动力学和系统基因组学特征的研究,以提供对组粒变异进化的见解。我们分析了印度各邦存入GISAID数据库的564个基因组。使用穿山甲COVID-19谱系分配工具确定所有检索到的基因组的谱系分配。最大似然(MLE)树的构建进一步证实了基因组分为两个不同的分支,BA。1. 和英航。2. 估计BA.2世系的繁殖数(R0)为2.445。特伦甘纳邦的最高R0值证实了该邦BA.2血统的流行。减少中位数(RM)网络的构建显示了一些本地单倍群和单倍型的进化,这进一步支持了组粒相对于其先前变体的快速进化。使用最大似然(ML)和RM的系统基因组分析分别显示了亚亚谱系和新单倍群出现的潜力。鉴于组粒病毒的重组特性和高传播性,我们建议在印度所有州进行持续和更广泛的基因组测序,以实时跟踪SARS-CoV-2的进化。
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引用次数: 1
Prevalence of common inhaled allergies in Erbil province, Kurdistan Region of Iraq 伊拉克库尔德斯坦地区埃尔比勒省常见吸入性过敏的流行情况
Pub Date : 2021-01-03 DOI: 10.5281/ZENODO.4395149
Shkar Rzgar K. Rostam, K. Shekhany, Harem O. Smail
Nowadays, inhaled allergens are the main causes of allergic diseases, which are derived from different sources such as animal dander, grasses, tree, insects and fungi/molds. Identification and detection of allergens play a critical role in the diagnosis and treatment of many allergic diseases. Aims were to determine the prevalence of most common inhaled allergens in Erbil province and determination the intensity of allergic response among allergic patients against 35 identified inhaled allergens items. A total number of 170 patients suffering from suspected inhalant allergy were checked in the present study. The study was carried out for patients who visited the private clinical sectors between 2018-2020 in Erbil province, Kurdistan Region of Iraq. Determination of specific IgE (sIgE) antibodies was examined for suspected patients. The country-specific inhaled allergy profile “Euroline inhaled Iraq 1” (Catalog no: DP 313816011 E, IVD approved, and CE certified EUROLINE immunoblot), containing strip for 35 different inhalant allergens, has been used in this study. Positive specific IgE to inhaled allergens was detected in 22.35% of our suspected patients. Orchard grass (21.05%) was the most inhaled allergen in our 38 allergic patients, followed by the Meadow foxtail (15.78%), Cockroach German and Sweet vernal grass (13.15%). Based on the present study results, we conclude that the prevalence of inhaled allergy differed between men and women in different age groups. Our study reached that there were no associations between inhaled allergens and sex or age. DOI: http://dx.doi.org/10.5281/zenodo.4395149
如今,吸入性过敏原是过敏性疾病的主要原因,其来源不同,如动物皮屑、草、树、昆虫和真菌/霉菌。过敏原的识别和检测在许多过敏性疾病的诊断和治疗中起着至关重要的作用。目的是确定埃尔比勒省最常见的吸入过敏原的患病率,并确定过敏患者对35种已确定的吸入过敏原的过敏反应强度。本研究共检查了170例疑似吸入性过敏患者。该研究是对2018-2020年在伊拉克库尔德斯坦地区埃尔比勒省访问私营临床部门的患者进行的。对疑似患者检测特异性IgE (sIgE)抗体。本研究使用了国家特异性吸入性过敏谱“Euroline吸入性伊拉克1号”(目录号:DP 313816011 E, IVD批准,CE认证的Euroline免疫印迹),包含35种不同的吸入性过敏原的条带。对吸入过敏原特异性IgE阳性的疑似患者占22.35%。38例过敏患者吸入最多的过敏原是果园草(21.05%),其次是草地狐尾草(15.78%)、德国蜚蠊和甜春草(13.15%)。根据目前的研究结果,我们得出结论,吸入性过敏的患病率在不同年龄组的男性和女性之间存在差异。我们的研究表明,吸入的过敏原与性别或年龄没有关联。DOI: http://dx.doi.org/10.5281/zenodo.4395149
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引用次数: 0
Establishment of plant residues and inorganic fertilizer application for growth and yield of Vigna unguiculata (L.) in flood-affected cropland of Koshi Tappu Region, Eastern Nepal 尼泊尔东部Koshi Tappu地区水患农田植物残茬和无机肥施用对马蹄铁生长和产量的影响
Pub Date : 2021-01-03 DOI: 10.5281/ZENODO.4338159
N. Paudel, S. Subedi, T. Mandal, Bishnu Dev Das
Flood increases due to an increase in river overflow which affects on abiotic and biotic factors. The preliminary study of flood-affected crops was carried out in flood-affected cropland of Koshi Tappu Region of Eastern Nepal. For the experiment the plant residues of Eichhornia crassipes and Sesbania rostrata and inorganic fertilizer were selected to examine the growth and yield in Vigna unguiculata. The appropriate treatments for the production of V. unguiculata were analyzed. Before applying treatments, soil was collected and analyzed for physicochemical, microbial biomass and available nitrogen. Soil texture, soil moisture, water holding capacity and bulk density (BD) were calculated. The parameters such as soil pH organic carbon, organic matter and total nitrogen were determined. Soil microbe increases the significance of organic carbon and soil nitrogen is correlated for growth and yield. The results showed that the combined urea and plant residue increases the highest yield. And the Eichhornia compost represents the highest leaf area index and biomass. The total pod production was found in the Echhhornia compost. The dry weight per single pod in Eichhornia fresh was 7.82 g and in Sesbania fresh was 7.42 g. It proves that the land pattern is significant for the soil organic compounds. The experiment showed that the use of plant residues enhanced the increase of physicochemical properties of soil by adding the nutrients. The combined Urea + Eichhornia supports the best growth and development of the plant. DOI: http://dx.doi.org/10.5281/zenodo.4338159
洪水的增加是由于河流溢流的增加,这影响了非生物和生物因素。在尼泊尔东部Koshi Tappu地区受洪灾影响的农田进行了受洪灾影响作物的初步研究。本试验以无机肥和无机肥为对照,研究了马蹄莲的生长和产量。分析了适宜的处理方法。处理前收集土壤,分析理化、微生物量和速效氮。计算了土壤质地、土壤含水量、持水量和容重。测定了土壤pH、有机碳、有机质、全氮等参数。土壤微生物增加有机碳和土壤氮的意义与生长和产量相关。结果表明,尿素与植物残茬配施产量最高。其中叶面积指数和生物量最高。豆荚总产量在石竹堆肥中发现。鲜田葵单荚干重为7.82 g,鲜田葵单荚干重为7.42 g。证明了土地格局对土壤有机化合物的影响是显著的。试验表明,植物残体的利用通过增加养分,促进了土壤理化性质的提高。尿素+ Eichhornia的组合支持植物的最佳生长和发育。DOI: http://dx.doi.org/10.5281/zenodo.4338159
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引用次数: 2
Ayurveda and Yoga practices: a synergistic approach for the treatment of Alzheimer’s disease 阿育吠陀和瑜伽练习:治疗阿尔茨海默病的协同方法
Pub Date : 2021-01-03 DOI: 10.5281/ZENODO.4320957
S. Mishra, S. Singh
Alzheimer’s disease (AD) is an irreversible and progressive neurodegenerative disease which affects about over 30 million people worldwide. There is no suitable treatment for AD nowadays. The current scenario of the research in the field of the search for suitable therapeutic approaches for the treatment of Alzheimer’s disease should be a shift towards the combinatorial approach of Ayurveda and Yoga. This review is mainly focused on to adapt Ayurveda and Yoga approaches for the treatment of Alzheimer’s disease. DOI: http://dx.doi.org/10.5281/zenodo.4320957
阿尔茨海默病(AD)是一种不可逆的进行性神经退行性疾病,影响着全世界约3000多万人。目前还没有合适的治疗AD的方法。目前,在寻找治疗阿尔茨海默病的合适治疗方法的研究领域,应该转向阿育吠陀和瑜伽的组合方法。本文主要综述了阿育吠陀和瑜伽治疗阿尔茨海默病的方法。DOI: http://dx.doi.org/10.5281/zenodo.4320957
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引用次数: 1
Marine biomolecules: a promising approach in therapy and biotechnology 海洋生物分子:治疗和生物技术的一个有前途的方法
Pub Date : 2021-01-01 DOI: 10.5281/ZENODO.4384158
Asmaa Chbel, Aurelio Serrano Delgado, A. Soukri, B. E. Khalfi
The marine environment is characterized by a wide diversity of microorganisms among which marine bacteria. To insure their survival in hostile conditions where they face high competition with pathogenic microorganisms, they produce various kinds of bioactive molecules within biofilms with unique structural and functional features. As example: marine peptides which provide a broad spectrum of antimicrobial, antitumoral, antiviral and anti-inflammatory activities, in addition to marine exopolysaccharides showing antifouling and antifungal activities, immunomodulatory properties, emulsion stabilization capacity with other various potentials. Some biofilms have shown a beneficial role for aquaculture, among which enhancement of growth performance and improvement of water quality, while others are threatening not only aquaculture and maritime fields, but also medicine and food industry. Thus, marine bioactive compounds are promising preventing agents for the establishment and growth of fouling microorganisms, which may be useful in different fields in order to decrease economic losses and avoid foodborne illnesses. DOI: http://dx.doi.org/10.5281/zenodo.4384158
海洋环境的特点是微生物种类繁多,其中包括海洋细菌。为了确保它们在与病原微生物激烈竞争的恶劣条件下生存,它们在生物膜内产生各种具有独特结构和功能特征的生物活性分子。例如:具有广谱抗菌、抗肿瘤、抗病毒和抗炎活性的海洋多肽,以及具有抗污染和抗真菌活性、免疫调节特性、乳液稳定能力等多种潜力的海洋外多糖。有些生物膜对水产养殖具有提高生长性能、改善水质等有益作用,而另一些生物膜不仅对水产养殖和海洋领域构成威胁,还对医药和食品工业构成威胁。因此,海洋生物活性化合物是一种很有前景的防止污染微生物滋生和生长的药剂,在减少经济损失和避免食源性疾病方面具有重要的应用前景。DOI: http://dx.doi.org/10.5281/zenodo.4384158
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引用次数: 5
SHERLOCK and DETECTR CRISPR-CAS systems as better diagnostic tools for COVID-19 SHERLOCK和DETECTR CRISPR-CAS系统是更好的COVID-19诊断工具
Pub Date : 2021-01-01 DOI: 10.5281/zenodo.5237359
Salai S. Sumukhi, E. Joseph
SARS-CoV-2, the mighty manslayer, responsible for COVID-19, has currently killed over 1.54 million people worldwide and 141,000 in India alone. It has affected around 67 million people globally and 9.68 million in India. It has quarantined the whole world. Doctors and scientists are working around the clock to save the world from this deadly virus. Since the number of patients is increasing rapidly, it is essential to test as many suspects as possible. But with the diagnostic tests that are being used currently, the polymerase chain reaction, antibody detection (Serological tests), Rapid Diagnostic tests (RDT), antigen tests and Isothermal Amplification assays are time consuming and there is a high chance that the test might come back with the wrong results. SHERLOCK and DETECTR are CRISPR-based diagnostic tool that were recently worked upon and showed very promising results. The test results come back in less than 40 minutes and the tests are far more accurate than all of the current diagnostics which makes them far more efficient than the others.
导致COVID-19的强大杀手SARS-CoV-2目前已在全球造成154万人死亡,仅在印度就造成14.1万人死亡。全球约有6700万人受到影响,印度有968万人受到影响。它隔离了整个世界。医生和科学家们正在夜以继日地工作,以拯救世界免受这种致命病毒的侵袭。由于患者人数迅速增加,必须对尽可能多的疑似患者进行检测。但是,目前使用的诊断测试,聚合酶链反应、抗体检测(血清学测试)、快速诊断测试(RDT)、抗原测试和等温扩增分析都是耗时的,而且测试很有可能得出错误的结果。SHERLOCK和DETECTR是基于crispr的诊断工具,最近得到了研究,并显示出非常有希望的结果。检测结果在不到40分钟的时间内就会出来,而且这些检测比目前所有的诊断方法都要准确得多,这使得它们比其他方法更有效。
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引用次数: 0
Types of face coverings (masks) and Coronavirus disease 2019 (COVID-19) 口罩类型和2019冠状病毒病(COVID-19)
Pub Date : 2021-01-01 DOI: 10.5281/zenodo.5068415
Anjum Tajamul Islam Summer
The ongoing pandemic has been increasing slowly and steadily across the world. The SARS-CoV-2 spreads through droplet disseminated from infected persons via coughing and/or sneezing onto the face, nasopharyngeal, and oropharyngeal mucosa. In order to prevent the transmission of coronavirus disease, WHO and public health officials made policies, advised the health workers and public to wear face coverings (masks). The nature of masks depends upon the source, material, structure and particulate efficacies. The main objective of this study is to provide information about efficacies of different types of masks used during COVID-19 pandemic.
目前的大流行在世界各地缓慢而稳定地增加。SARS-CoV-2通过感染者咳嗽和/或打喷嚏传播到面部、鼻咽和口咽粘膜的飞沫传播。为了防止冠状病毒病的传播,世卫组织和公共卫生官员制定了政策,建议卫生工作者和公众戴口罩。口罩的性质取决于来源、材料、结构和微粒效能。本研究的主要目的是提供COVID-19大流行期间使用的不同类型口罩的功效信息。
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引用次数: 2
Validation of Ganoderma lucidum against hypercholesterolemia and Alzheimer's disease 灵芝抗高胆固醇血症和阿尔茨海默病的有效性验证
Pub Date : 2020-08-31 DOI: 10.5281/ZENODO.4009588
M. Rahman, S. Hossain, N. Abdullah, Norhaniza Aminudin
Ganoderma lucidum has been hailed as medicinal mushroom. Its effect on memory and learning related behavioral performance along with related protein markers has been evaluated using Alzheimer’s disease (AD) and hypercholesterolemic model rats in the present study. AD model rats were prepared infusing amyloid beta peptide into the right ventricles of the rats. Hypercholesterolemia was evoked feeding 1% cholesterol and 1% cholic acid with basal diet of the rats for 8 weeks. Hot water extract of G. lucidum was ingested orally (200 mg/kg bw) to the HC and AD model rats. Memory and learning related behavioral tests were performed using Barnes maze while protein markers (BDNF, SNAP2, PSD-95, VAchT) were detected using ELISA. Observed findings suggest hypocholesterolemic, lipid profile improving and enhanced cognitive performance of the G. lucidum fed rats. Memory and learning related protein markers also substantiate this fruition. Thus, therapeutic potentiality of Ganoderma lucidum in AD amelioration seems promising. DOI: http://dx.doi.org/10.5281/zenodo.4009588
灵芝一直被誉为药用蘑菇。本研究利用阿尔茨海默病(AD)和高胆固醇血症模型大鼠评估了其对记忆和学习相关行为表现及相关蛋白标志物的影响。将淀粉样蛋白肽注入右心室制备AD模型大鼠。以1%胆固醇和1%胆酸为基础日粮,连续8周诱发高胆固醇血症。对HC和AD模型大鼠口服灵芝热水提取物(200 mg/kg bw)。采用Barnes迷宫法进行记忆和学习相关行为测试,ELISA法检测蛋白质标志物BDNF、SNAP2、PSD-95、VAchT。观察结果表明,给药大鼠降低胆固醇,改善血脂,增强认知能力。记忆和学习相关的蛋白质标记也证实了这一结果。因此,灵芝治疗阿尔茨海默病的潜力似乎是有希望的。DOI: http://dx.doi.org/10.5281/zenodo.4009588
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引用次数: 4
Effects of chlorpyrifos on ultimobranchial and parathyroid glands of Indian skipper frog, Euphlyctis cyanophlyctis 毒死蜱对印度跳蛙鳃末和甲状旁腺的影响
Pub Date : 2020-08-27 DOI: 10.5281/ZENODO.4004156
A. Srivastav, S. Srivastava, Abhishek Kumar, S. Srivastav, N. Suzuki
This study investigated effects of chlorpyrifos on ultimobranchial (UBG) and parathyroid glands (PTG) of frog, Euphlyctis cyanophlyctis. Frogs were treated with chlorpyrifos for short and long term and sacrificed after 24, 48, 72 or 96 h in short term and after 5.10, 15 and 30 days in long term. Chlorpyrifos exposure provokes   decrease  in    serum  calcium  levels  after  48 h which persists till 96 h. There is slight decrease in the nuclear volume of UBG cells and  cytoplasm depict weak staining response after 72 h. After 96 h these changes are more pronounced. PTG of Euphlyctis cyanophlyctis exposed to chlorpyrifos exhibit no change till 96 h. Serum calcium decreases on day 10 after chlorpyrifos exposure which continue to fall progressively till 30 days. After 15 days chloryrifos exposure, nuclear volume of UBG exhibit decrease and follicular epithelium displays decrease in height. Follicular epithelium after 30 days chlorpyrifos exposure reduces to the extent that it becomes single layered. Few degenerating cells have been discerned. At this interval nuclear volume of ultimobranchial cells exhibits a further decrease. PTG of chlorpyrifos treated frog depicts increased nuclear volume of PTG at 10 and 15 days. The nuclei of PTG are hyperchromatic and the gland becomes compact at 15 days. After 30 days following chlorpyrifos treatment nuclear volume exhibits further increase. Also degenerating cells make their appearance. Calcium regulating glands UBG and PTG of frogs were adversely affected by exposure to chlorpyrifos which may disturb the physiological functions of the organism. DOI: http://dx.doi.org/10.5281/zenodo.4004156
本研究探讨了毒死蜱对青花幼稚蛙鳃末(UBG)和甲状旁腺(PTG)的影响。毒死蜱短期和长期处理,短期处理24、48、72、96 h,长期处理5.10、15、30 d后处死。毒死蜱暴露可引起48 h后血钙水平下降,并持续到96 h。72 h后UBG细胞和细胞质的核体积略有减少,染色反应较弱。96 h后这些变化更为明显。毒死蜱暴露后96 h,褐黄小胡蜂PTG无变化。毒死蜱暴露后第10天,血钙下降,并逐渐下降至30 d。毒死蜱暴露15天后,UBG核体积减小,滤泡上皮高度降低。毒死蜱暴露30天后,滤泡上皮减少至单层。很少发现退化的细胞。在此期间,鳃旁细胞的核体积进一步减小。毒死蜱处理后第10天和第15天,青蛙PTG核体积增加。PTG的细胞核深染,腺体在第15天变得致密。毒死蜱处理30天后,核体积进一步增大。退化的细胞也出现了。毒死蜱对蛙的钙调节腺UBG和PTG有不良影响,可能干扰机体的生理功能。DOI: http://dx.doi.org/10.5281/zenodo.4004156
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引用次数: 2
Vitamins, omega-3, magnesium, manganese, and thyme can boost our immunity and protect against COVID-19 维生素、omega-3、镁、锰和百里香可以增强我们的免疫力,预防COVID-19
Pub Date : 2020-08-18 DOI: 10.5281/ZENODO.3990659
A. Hamada
A new coronavirus, SARS-CoV-2, has been recognized as a cause of severe acute respiratory syndrome (SARS) and COVID-19 disease. In the absence of stable treatments for COVID-19, the possibility that vitamins: B1, C, D, and E, omega-3, minerals (magnesium and manganese), and herb thyme may have unspecified effects on infection with COVID-19 would be considered. Various reports have revealed that vitamins B1, C, D, and E, omega-3, magnesium, manganese, and thyme may affect the human innate system, for example, thiamine may play beneficial roles in human immunodeficiency viruses (HIV), treating megadose ascorbic acid can assist prevent cold and flu symptoms, vitamin D can decrease the risk of developing COVID-19, vitamin E has been evaluated against the influenza virus in mice, and omega-3 fatty acids supplementation has been efficient in reducing the severity and frequency of sickle cell rate. Magnesium may be effective in patients with a mutation in the interleukin-2-inducible T-cell kinase, as well as manganese associates with the metabolism of glucose and fats, vitamin C, and B, accelerating protein synthesis, endocrine regulation, stimulating hematopoiesis, improving innate function, and reducing reactive oxygen species (ROS) generation. Moreover, thyme extract can have beneficial antiviral effects against human papillomavirus (HPV) and influenza A (IAV). The possibility that the vitamins B1, C, D, E, omega-3, magnesium, manganese, and thyme appear to affect the human innate system warrants further study, especially in light of the recent COVID-19 epidemic. DOI: http://dx.doi.org/10.5281/zenodo.3990659
一种新的冠状病毒SARS- cov -2已被认为是导致严重急性呼吸系统综合征(SARS)和COVID-19疾病的原因。在COVID-19缺乏稳定治疗方法的情况下,将考虑维生素B1、C、D和E、omega-3、矿物质(镁和锰)和草药百里香可能对COVID-19感染产生未指明的影响的可能性。各种报告显示,维生素B1、C、D和E、omega-3、镁、锰和百里香可能影响人类先天系统,例如,硫胺素可能对人类免疫缺陷病毒(HIV)起有益作用,治疗大剂量抗坏血酸有助于预防感冒和流感症状,维生素D可以降低患COVID-19的风险,维生素E已在小鼠中对流感病毒进行了评估,补充omega-3脂肪酸对降低镰状细胞率的严重程度和频率有效。镁可能对白细胞介素-2诱导的t细胞激酶突变的患者有效,锰与葡萄糖和脂肪、维生素C和B的代谢有关,加速蛋白质合成,调节内分泌,刺激造血,改善先天功能,减少活性氧(ROS)的产生。此外,百里香提取物对人乳头瘤病毒(HPV)和甲型流感(IAV)具有有益的抗病毒作用。维生素B1、C、D、E、omega-3、镁、锰和百里香似乎影响人类先天系统的可能性值得进一步研究,特别是考虑到最近的COVID-19流行。DOI: http://dx.doi.org/10.5281/zenodo.3990659
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引用次数: 7
期刊
European Journal of Biological Research
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