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Pseudo-random Number Generator Influences on Average Treatment Effect Estimates Obtained with Machine Learning. 伪随机数生成器对机器学习获得的平均治疗效果估计值的影响》(Pseudo-Random Number Generator Influences on Average Treatment Effect Estimates obtained with Machine Learning)。
IF 4.7 2区 医学 Q1 PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH Pub Date : 2024-11-01 Epub Date: 2024-08-16 DOI: 10.1097/EDE.0000000000001785
Ashley I Naimi, Ya-Hui Yu, Lisa M Bodnar

Background: The use of machine learning to estimate exposure effects introduces a dependence between the results of an empirical study and the value of the seed used to fix the pseudo-random number generator.

Methods: We used data from 10,038 pregnant women and a 10% subsample (N = 1004) to examine the extent to which the risk difference for the relation between fruit and vegetable consumption and preeclampsia risk changes under different seed values. We fit an augmented inverse probability weighted estimator with two Super Learner algorithms: a simple algorithm including random forests and single-layer neural networks and a more complex algorithm with a mix of tree-based, regression-based, penalized, and simple algorithms. We evaluated the distributions of risk differences, standard errors, and P values that result from 5000 different seed value selections.

Results: Our findings suggest important variability in the risk difference estimates, as well as an important effect of the stacking algorithm used. The interquartile range width of the risk differences in the full sample with the simple algorithm was 13 per 1000. However, all other interquartile ranges were roughly an order of magnitude lower. The medians of the distributions of risk differences differed according to the sample size and the algorithm used.

Conclusions: Our findings add another dimension of concern regarding the potential for "p-hacking," and further warrant the need to move away from simplistic evidentiary thresholds in empirical research. When empirical results depend on pseudo-random number generator seed values, caution is warranted in interpreting these results.

背景:使用机器学习估算暴露效应会在实证研究结果与用于固定伪随机数生成器的种子值之间引入一种依赖关系:我们使用了来自 10,038 名孕妇和 10% 的子样本(N = 1,004)的数据,研究了在不同的种子值下,水果和蔬菜摄入量与子痫前期风险之间的风险差异变化程度。我们用两种超级学习器算法拟合了一个增强的反概率加权估计器:一种是包括随机森林和单层神经网络的简单算法,另一种是混合了基于树、基于回归、惩罚算法和简单算法的更复杂算法。我们评估了 5000 个不同种子值的风险差异、标准误差和 p 值的分布情况:结果:我们的研究结果表明,风险差异估计值存在很大差异,所使用的堆叠算法也有重要影响。在使用简单算法的全样本中,风险差异的四分位数范围宽度(IQRw)为 13‰。然而,所有其他的 IQR 都低了大约一个数量级。风险差异分布的中位数因样本量和所用算法而异:我们的发现为 "p-黑客 "的可能性增添了新的担忧,并进一步证明了在实证研究中摒弃简单的证据阈值的必要性。当实证结果依赖于伪随机数生成器种子值时,在解释这些结果时必须谨慎。
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引用次数: 0
Re: Bias in Calculation of Attributable Fractions Using Relative Risks from Nonsmokers Only. 关于仅使用不吸烟者的相对风险计算可归因分数的偏差。
IF 4.7 2区 医学 Q1 PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH Pub Date : 2024-11-01 Epub Date: 2024-09-30 DOI: 10.1097/EDE.0000000000001786
Etsuji Suzuki, Eiji Yamamoto
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引用次数: 0
Prenatal Exposure to Nonpersistent Chemicals and Fetal-to-childhood Growth Trajectories. 产前接触非持久性化学品与胎儿至儿童期的生长轨迹。
IF 4.7 2区 医学 Q1 PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH Pub Date : 2024-11-01 Epub Date: 2024-07-23 DOI: 10.1097/EDE.0000000000001772
Paige A Bommarito, Sophia M Blaauwendraad, Danielle R Stevens, Michiel A van den Dries, Suzanne Spaan, Anjoeka Pronk, Henning Tiemeier, Romy Gaillard, Leonardo Trasande, Vincent V W Jaddoe, Kelly K Ferguson

Introduction: Prenatal exposure to nonpersistent chemicals, including organophosphate pesticides, phthalates, and bisphenols, is associated with altered fetal and childhood growth. Few studies have examined these associations using longitudinal growth trajectories or considering exposure to chemical mixtures.

Methods: Among 777 participants from the Generation R Study, we used growth mixture models to identify weight and body mass index trajectories using weight and height measures collected from the prenatal period to age 13. We measured exposure biomarkers for organophosphate pesticides, phthalates, and bisphenols in maternal urine at three timepoints during pregnancy. Multinomial logistic regression was used to estimate associations between averaged exposure biomarker concentrations and growth trajectories. We used quantile g-computation to estimate joint associations with growth trajectories.

Results: Phthalic acid (OR = 1.4; 95% CI = 1.01, 1.9) and bisphenol A (OR = 1.5; 95% CI = 1.0, 2.2) were associated with higher odds of a growth trajectory characterized by smaller prenatal and larger childhood weight relative to a referent trajectory of larger prenatal and average childhood weight. Biomarkers of organophosphate pesticides, individually and jointly, were associated with lower odds of a growth trajectory characterized by average prenatal and lower childhood weight.

Conclusions: Exposure to phthalates and bisphenol A was positively associated with a weight trajectory characterized by lower prenatal and higher childhood weight, while exposure to organophosphate pesticides was negatively associated with a trajectory of average prenatal and lower childhood weight. This study is consistent with the hypothesis that nonpersistent chemical exposures disrupt growth trajectories from the prenatal period through childhood.

导言:产前接触非持久性化学物质(包括有机磷农药、邻苯二甲酸盐和双酚)与胎儿和儿童的生长变化有关。很少有研究利用纵向生长轨迹或考虑化学混合物的暴露来研究这些关联:方法:在 R 世代研究的 777 名参与者中,我们使用生长混合物模型,利用从产前到 13 岁期间收集的体重和身高测量数据来确定体重和体重指数(BMI)轨迹。我们在孕期的三个时间点测量了母体尿液中有机磷农药、邻苯二甲酸盐和双酚的暴露生物标志物。我们采用多项式逻辑回归来估计平均暴露生物标记物浓度与生长轨迹之间的关联。我们使用量子 g 计算方法来估计与生长轨迹的联合关联:结果:邻苯二甲酸(OR:1.4,95% CI:1.01,1.9)和双酚 A(BPA;OR:1.5,95% CI:1.0,2.2)与出生前体重较小、儿童期体重较大的生长轨迹相关,而参考轨迹为出生前体重较大、儿童期体重一般。有机磷农药的生物标志物(单独或共同)与以平均产前体重和较低儿童体重为特征的较低生长轨迹几率相关:结论:接触邻苯二甲酸盐和双酚 A 与以较低的产前体重和较高的儿童期体重为特征的体重轨迹呈正相关,而接触有机磷农药与平均的产前体重和较低的儿童期体重轨迹呈负相关。这项研究与非持久性化学物质暴露会扰乱从产前到儿童期的生长轨迹这一假设是一致的。
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引用次数: 0
Exposure to Ambient Heat and Risk of Spontaneous Abortion: A Case-Crossover Study. 暴露于环境热量与自然流产的风险:病例交叉研究。
IF 4.7 2区 医学 Q1 PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH Pub Date : 2024-11-01 Epub Date: 2024-07-26 DOI: 10.1097/EDE.0000000000001774
Amelia K Wesselink, Emma L Gause, Keith D Spangler, Perry Hystad, Kipruto Kirwa, Mary D Willis, Gregory A Wellenius, Lauren A Wise

Background: Few epidemiologic studies have examined the association of ambient heat with spontaneous abortion, a common and devastating pregnancy outcome.

Methods: We conducted a case-crossover study nested within Pregnancy Study Online, a preconception cohort study (2013-2022). We included all participants reporting spontaneous abortion (N = 1,524). We defined the case window as the 7 days preceding the event and used time-stratified referent selection to select control windows matched on calendar month and day of week. Within each 7-day case and control window, we measured the mean, maximum, and minimum of daily maximum outdoor air temperatures. We fit splines to examine nonlinear relationships across the entire year and conditional logistic regression to estimate odds ratios (ORs) and 95% confidence interval (CI) of spontaneous abortion with increases in temperature during the warm season (May-September) and decreases during the cool season (November-March).

Results: We found evidence of a U-shaped association between outdoor air temperature and spontaneous abortion risk based on year-round data. When restricting to warm season events (n = 657), the OR for a 10-percentile increase in the mean of lag 0-6 daily maximum temperatures was 1.1 (95% CI: 0.96, 1.2) and, for the maximum, 1.1 (95% CI: 0.99, 1.2). The OR associated with any extreme heat days (>95th county-specific percentile) in the preceding week was 1.2 (95% CI: 0.95, 1.5). Among cool season events (n = 615), there was no appreciable association between lower temperatures and spontaneous abortion risk.

Conclusion: Our study provides evidence of an association between high outdoor temperatures and the incidence of spontaneous abortion.

背景:很少有流行病学研究探讨环境温度与自然流产的关系,而自然流产是一种常见的破坏性妊娠结局:我们在孕前队列研究(2013-2022 年)"在线妊娠研究 "中嵌套进行了一项病例交叉研究。我们纳入了所有报告自然流产的参与者(n=1,524)。我们将病例窗口定义为事件发生前的 7 天,并使用时间分层参照物选择来选择与日历月份和星期相匹配的对照窗口。在每个为期 7 天的病例窗口和对照窗口内,我们测量了每日室外最高气温的平均值、最高值和最低值。我们对全年的非线性关系进行了样条拟合,并通过条件逻辑回归估算了暖季(5 月至 9 月)气温升高和冷季(11 月至 3 月)气温降低时自然流产的几率比(OR)和 95% CI:结果:根据全年数据,我们发现室外气温与自然流产风险之间存在 U 型关系。如果仅限于暖季事件(n=657),0-6滞后日最高气温平均值每增加10个百分点的OR值为1.1(95% CI:0.96,1.2),最高值为1.1(95% CI:0.99,1.2)。与前一周任何极端高温日(>95th 县特定百分位数)相关的 OR 值为 1.2(95% CI:0.95, 1.5)。在凉季事件(n=615)中,较低气温与自然流产风险之间没有明显关联:我们的研究提供了室外高温与自然流产发生率之间存在关联的证据。
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引用次数: 0
Evaluating Binary Outcome Classifiers Estimated from Survey Data. 评估从调查数据中估算出的二元结果分类器。
IF 4.7 2区 医学 Q1 PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH Pub Date : 2024-11-01 Epub Date: 2024-08-14 DOI: 10.1097/EDE.0000000000001776
Adway S Wadekar, Jerome P Reiter

Surveys are commonly used to facilitate research in epidemiology, health, and the social and behavioral sciences. Often, these surveys are not simple random samples, and respondents are given weights reflecting their probability of selection into the survey. We show that using survey weights can be beneficial for evaluating the quality of predictive models when splitting data into training and test sets. In particular, we characterize model assessment statistics, such as sensitivity and specificity, as finite population quantities and compute survey-weighted estimates of these quantities with test data comprising a random subset of the original data. Using simulations with data from the National Survey on Drug Use and Health and the National Comorbidity Survey, we show that unweighted metrics estimated with sample test data can misrepresent population performance, but weighted metrics appropriately adjust for the complex sampling design. We also show that this conclusion holds for models trained using upsampling for mitigating class imbalance. The results suggest that weighted metrics should be used when evaluating performance on test data derived from complex surveys.

调查通常用于促进流行病学、健康以及社会和行为科学领域的研究。这些调查通常不是简单的随机抽样,受访者被赋予的权重反映了他们被选入调查的概率。我们的研究表明,在将数据分成训练集和测试集时,使用调查权重有利于评估预测模型的质量。特别是,我们将灵敏度和特异性等模型评估统计量描述为有限群体量,并利用由原始数据随机子集组成的测试数据计算这些量的调查加权估计值。通过对全国药物使用与健康调查和全国发病率调查的数据进行模拟,我们表明,使用抽样测试数据估算的非加权指标可能会错误地反映人群的表现,但加权指标可对复杂的抽样设计进行适当调整。我们还表明,这一结论适用于使用上采样减轻类不平衡而训练的模型。结果表明,在评估来自复杂调查的测试数据的性能时,应使用加权指标。
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引用次数: 0
Commentary: The Seedy Side of Causal Effect Estimation with Machine Learning. 特邀评论:使用机器学习进行因果效应估计的肮脏一面。
IF 4.7 2区 医学 Q1 PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH Pub Date : 2024-11-01 Epub Date: 2024-08-16 DOI: 10.1097/EDE.0000000000001783
Paul N Zivich
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引用次数: 0
The Author Responds. 作者们的回应
IF 4.7 2区 医学 Q1 PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH Pub Date : 2024-11-01 Epub Date: 2024-09-30 DOI: 10.1097/EDE.0000000000001787
Katherine M Flegal
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引用次数: 0
Generalizability of Heat-related Health Risk Associations Observed in a Large Healthcare Claims Database of Patients with Commercial Health Insurance. 在一个大型医疗索赔数据库中观察到的与高温有关的健康风险关联的普遍性,该数据库的对象是购买了商业医疗保险的患者。
IF 4.7 2区 医学 Q1 PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH Pub Date : 2024-11-01 Epub Date: 2024-08-09 DOI: 10.1097/EDE.0000000000001781
Chad W Milando, Yuantong Sun, Yasmin Romitti, Amruta Nori-Sarma, Emma L Gause, Keith R Spangler, Ian Sue Wing, Gregory A Wellenius

Background: Extreme ambient heat is unambiguously associated with a higher risk of illness and death. The Optum Labs Data Warehouse (OLDW), a database of medical claims from US-based patients with commercial or Medicare Advantage health insurance, has been used to quantify heat-related health impacts. Whether results for the insured subpopulation are generalizable to the broader population has, to our knowledge, not been documented. We sought to address this question, for the US population in California from 2012 to 2019.

Methods: We examined changes in daily rates of emergency department encounters and in-patient hospitalization encounters for all-causes, heat-related outcomes, renal disease, mental/behavioral disorders, cardiovascular disease, and respiratory disease. OLDW was the source of health data for insured individuals in California, and health data for the broader population were gathered from the California Department of Health Care Access and Information. We defined extreme heat exposure as any day in a group of 2 or more days with maximum temperatures exceeding the county-specific 97.5th percentile and used a space-time-stratified case-crossover design to assess and compare the impacts of heat on health.

Results: Average incidence rates of medical encounters differed by dataset. However, rate ratios for emergency department encounters were similar across datasets for all causes [ratio of incidence rate ratios (rIRR) = 0.989; 95% confidence interval (CI) = 0.969, 1.009], heat-related causes (rIRR = 1.080; 95% CI = 0.999, 1.168), renal disease (rIRR = 0.963; 95% CI = 0.718, 1.292), and mental health disorders (rIRR = 1.098; 95% CI = 1.004, 1.201). Rate ratios for inpatient encounters were also similar.

Conclusions: This work presents evidence that OLDW can continue to be a resource for estimating the health impacts of extreme heat.

背景:极端的环境温度与较高的疾病和死亡风险有着明确的联系。Optum Labs Data Warehouse (OLDW) 是美国商业健康保险或医疗保险优势患者医疗索赔数据库,已被用于量化与高温有关的健康影响。据我们所知,投保人群的结果是否可以推广到更广泛的人群中,尚未有文献记载。我们试图解决这一问题,研究对象为 2012 年至 2019 年期间加利福尼亚州的美国人口:我们研究了急诊科(ED)每日就诊率和住院就诊率的变化情况,包括所有原因、与高温相关的结果、肾脏疾病、精神/行为障碍、心血管疾病和呼吸系统疾病。OLDW 是加州投保人健康数据的来源,而更广泛人群的健康数据则来自加州医疗保健获取和信息部 (HCAI)。我们将极端高温天气定义为最高气温超过特定县 97.5th 百分位数的 2 天或更多天中的任何一天,并采用时空分层病例交叉设计来评估和比较高温对健康的影响:不同数据集的平均就诊率各不相同。然而,在所有病因(发病率比值比 (rIRR) = 0.989; 95% 置信区间 (CI) = 0.973, 1.011)、热相关原因(rIRR = 1.080;95% CI = 0.999,1.168)、肾病(rIRR = 0.963;95% CI = 0.718,1.292)和精神疾病(rIRR = 1.098;95% CI = 1.004,1.201)。住院病人的比率也相似:这项工作提供的证据表明,OLDW 仍可作为估计极端高温对健康影响的资源。
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引用次数: 0
Investigating the Potential Short-term Adverse Effects of the Quadrivalent Human Papillomavirus Vaccine: A Novel Regression Discontinuity Analysis. 调查四价人类乳头瘤病毒疫苗的潜在短期不良影响:新型回归不连续分析法
IF 4.7 2区 医学 Q1 PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH Pub Date : 2024-11-01 Epub Date: 2024-09-30 DOI: 10.1097/EDE.0000000000001784
Ruta Margelyte, Maria Theresa Redaniel, Scott R Walter, Yvette Pyne, Sam Merriel, John Macleod, Kate Northstone, Kate Tilling

Background: Human papillomavirus (HPV) vaccination has been offered in over a hundred countries worldwide (including the United Kingdom, since September 2008). Controversy around adverse effects persists, with inconsistent evidence from follow-up of randomized controlled trials and confounding by indication limiting the conclusions drawn from larger-scale observational studies. This study aims to estimate the association between receiving a quadrivalent HPV vaccine and the reporting of short-term adverse effects and to demonstrate the utility of regression discontinuity design for examining side effects in routine data.

Methods: We applied a novel regression discontinuity approach to a retrospective population-based cohort using primary care data from the UK Clinical Practice Research Datalink linked to hospital and social deprivation data. We examined the new onset of gastrointestinal, neuromuscular, pain, and headache/migraine symptoms using READ and International Classification of Diseases, tenth revision diagnostic codes. For each year between 2012 and 2017, we compared girls in school year 8 (born July/August) who were eligible to receive the vaccine with girls in year 7 (born September/October) who were not eligible.

Results: Of the 21,853 adolescent girls in the cohort, 10,881 (50%) were eligible for HPV vaccination. There was no evidence of increased new gastrointestinal symptoms (adjusted odds ratio [OR]: 0.99; 95% confidence interval [CI]: 0.85, 1.15), headache/migraine symptoms (OR: 0.84; 95% CI: 0.70, 1.01), or pain symptoms (OR: 1.05; 95% CI: 0.95, 1.16) when comparing those eligible and ineligible for HPV vaccination.

Conclusion: This study found no evidence that HPV vaccination eligibility is associated with reporting short-term adverse effects among adolescent girls.

背景:全球已有一百多个国家提供人类乳头瘤病毒 (HPV) 疫苗接种(包括英国,自 2008 年 9 月起)。围绕不良反应的争议一直存在,随机对照试验的随访证据不一致以及适应症的混淆限制了更大规模的观察性研究得出的结论。本研究旨在估算接种四价 HPV 疫苗与短期不良反应报告之间的关联,并证明回归不连续设计在常规数据中检验副作用的实用性:我们利用英国临床实践研究数据链(UK Clinical Practice Research Datalink)中与医院和社会贫困程度数据相关联的初级保健数据,对基于人群的回顾性队列采用了一种新颖的回归不连续方法。我们使用 READ 和《国际疾病分类》第十版诊断代码对胃肠道、神经肌肉、疼痛和头痛/偏头痛症状的新发情况进行了研究。在2012年至2017年期间的每一年,我们都将符合接种疫苗条件的8年级(7月/8月出生)女生与不符合接种疫苗条件的7年级(9月/10月出生)女生进行了比较:在 21853 名少女中,有 10881 名(50%)符合接种 HPV 疫苗的条件。在比较符合和不符合接种 HPV 疫苗条件的人群时,没有证据表明新的胃肠道症状(调整后的几率比 [OR]:0.99;95% 置信区间 [CI]:0.85,1.15)、头痛/偏头痛症状(OR:0.84;95% CI:0.70,1.01)或疼痛症状(OR:1.05;95% CI:0.95,1.16)会增加:本研究没有发现证据表明接种 HPV 疫苗的资格与少女报告的短期不良反应有关。
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引用次数: 0
Bayesian Kernel Machine Regression for Social Epidemiologic Research. 用于社会流行病学研究的贝叶斯核机器回归。
IF 4.7 2区 医学 Q1 PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH Pub Date : 2024-11-01 Epub Date: 2024-08-01 DOI: 10.1097/EDE.0000000000001777
Jemar R Bather, Taylor J Robinson, Melody S Goodman

Background: Little attention has been devoted to framing multiple continuous social variables as a "mixture" for social epidemiologic analysis. We propose using the Bayesian kernel machine regression analytic framework that yields univariate, bivariate, and overall exposure mixture effects.

Methods: Using data from the 2023 Survey of Racism and Public Health, we conducted a Bayesian kernel machine regression analysis to study several individual, social, and structural factors as an exposure mixture and their relationships with psychological distress among individuals with at least one police arrest. Factors included racial and economic polarization, neighborhood deprivation, perceived discrimination, police perception, subjective social status, and substance use. We complemented this analysis with a series of unadjusted and adjusted models for each exposure mixture variable.

Results: We found that more self-reported discrimination experiences in the past year (posterior inclusion probability = 1.00) and greater substance use (posterior inclusion probability = 1.00) correlated with higher psychological distress. These associations were consistent with the findings from the unadjusted and adjusted linear regression analyses: past year perceived discrimination (unadjusted b = 2.58, 95% confidence interval [CI]: 1.86, 3.30; adjusted b = 2.20, 95% CI: 1.45, 2.94) and substance use (unadjusted b = 2.92, 95% CI: 2.21, 3.62; adjusted b = 2.59, 95% CI: 1.87, 3.31).

Conclusion: With the rise of big data and the expansion of variables in long-standing cohort and census studies, novel applications of methods from adjacent disciplines are a step forward in identifying exposure mixture associations in social epidemiology and addressing the health needs of socially vulnerable populations.

背景:在社会流行病学分析中,很少有人关注将多个连续社会变量作为 "混合物 "进行分析。我们建议使用贝叶斯核机器回归分析框架,该框架可产生单变量、双变量和总体暴露混合效应:利用 2023 年种族主义与公共健康调查的数据,我们进行了贝叶斯核机器回归分析,以研究作为暴露混合物的若干个人、社会和结构因素及其与至少有一次被警方逮捕的个人的心理困扰之间的关系。这些因素包括种族和经济两极分化、邻里贫困、歧视感知、警察感知、主观社会地位和药物使用。我们针对每个暴露混合变量建立了一系列未调整和调整模型,对上述分析进行了补充:我们发现,过去一年中自我报告的歧视经历越多(后纳入概率 = 1.00),药物使用越多(后纳入概率 = 1.00),心理压力就越大。这些关联与未调整和调整线性回归分析的结果一致:过去一年感知到的歧视(未调整 b = 2.58,95% CI:1.86,3.30;调整 b = 2.20,95% CI:1.45,2.94)和药物使用(未调整 b = 2.92,95% CI:2.21,3.62;调整 b = 2.59,95% CI:1.87,3.31):随着大数据的兴起以及长期队列和普查研究变量的扩大,相邻学科方法的新颖应用在确定社会流行病学中的暴露混合物关联和满足社会弱势群体的健康需求方面向前迈进了一步。
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引用次数: 0
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Epidemiology
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