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2022 Computing in Cardiology (CinC)最新文献

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Ultra-High Frequency ECG Deep-Learning Beat Detector Delivering QRS Onsets and Offsets 提供QRS起跳和偏移的超高频ECG深度学习心跳检测器
Pub Date : 2022-09-04 DOI: 10.22489/CinC.2022.230
Zuzana Koscova, R. Smíšek, P. Nejedly, J. Halámek, P. Jurák, P. Leinveber, K. Čurila, F. Plesinger
Background: QRS duration is a common measure linked to conduction abnormalities in heart ventricles. Aim: We propose a QRS detector, further able to locate QRS onset and offset in one inference step. Method: A 3-second window from 12 leads of UHF ECG signal (5 kHz) is standardized and processed with the UNet network. The output is an array of QRS probabilities, further processed with probability and distance criterion, allowing us to determine duration and final location of QRSs. Results: The model was trained on 2,250 ECG recordings from the FNUSA-ICRC hospital (Brno, Czechia). The model was tested on 5 different datasets: FNUSA, a dataset from FNKV hospital (Prague, Czechia), and three public datasets (Cipa, Strict LBBB, LUDB). Regarding QRS duration, results showed a mean absolute error of 13.99 ± 4.29 ms between annotated durations and the output of the proposed model. A QRS detection F-score was 0.98 ± 0.01. Conclusion: Our results indicate high QRS detection performance on both spontaneous and paced UHF ECG data. We also showed that QRS detection and duration could be combined in one deep learning algorithm.
背景:QRS持续时间是一种与心室传导异常相关的常见指标。目的:我们提出了一种QRS检测器,进一步能够在一个推理步骤中定位QRS的起始和偏移。方法:对5 kHz超高频心电信号12导联的3秒窗口进行标准化处理,并采用UNet网络进行处理。输出是QRS概率的数组,用概率和距离准则进一步处理,使我们能够确定QRS的持续时间和最终位置。结果:该模型接受了来自fnusa -红十字国际委员会医院(捷克布尔诺)的2250份心电图记录的训练。该模型在5个不同的数据集上进行了测试:FNUSA,来自FNKV医院(布拉格,捷克)的数据集,以及三个公共数据集(Cipa, Strict LBBB, LUDB)。关于QRS持续时间,结果显示标注的持续时间与所提出模型的输出之间的平均绝对误差为13.99±4.29 ms。QRS检测f值为0.98±0.01。结论:我们的研究结果表明,无论是自发的还是有节奏的UHF心电数据,QRS检测都有很高的性能。我们还表明,QRS检测和持续时间可以结合在一个深度学习算法中。
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引用次数: 0
PhysioTag: An Open-Source Platform for Collaborative Annotation of Physiological Waveforms 生理波形协同标注的开源平台PhysioTag
Pub Date : 2022-09-04 DOI: 10.22489/CinC.2022.335
L. McCullum, Hasan Saeed, Benjamin Moody, D. Perry, Eric Gottlieb, T. Pollard, Xavier Borrat Frigola, Qiao Li, Gari D. Clifford, R. Mark, Li-wei H. Lehman
To develop robust algorithms for automated diagnosis of medical conditions such as cardiac arrhythmias, researchers require large collections of data with human expert annotations. Currently, there is a lack of accessible, open-source platforms for human experts to collaboratively develop these annotated datasets through a web interface. In this work, we developed a flexible, generalizable, web-based framework to enable multiple users to create and share annotations on multi-channel physiological waveforms. Using the developed annotation platform, we carried out a pilot study to assess the validity of ventricular tachycardia (VT) alarms from multiple commercial monitors. Thus far, four clinical experts have used this annotation tool to annotate a total of 5,658 VT alarm events, among which approximately 44%(N=2,468) have been labeled by two independent annotators.
为了开发用于心律失常等医疗条件自动诊断的强大算法,研究人员需要大量带有人类专家注释的数据集。目前,缺乏可访问的开源平台,供人类专家通过web界面协作开发这些带注释的数据集。在这项工作中,我们开发了一个灵活的、通用的、基于web的框架,使多个用户能够创建和共享多通道生理波形的注释。利用开发的注释平台,我们进行了一项初步研究,以评估来自多个商业监视器的室性心动过速(VT)警报的有效性。迄今为止,共有4位临床专家使用该标注工具标注了5658个VT报警事件,其中约44%(N= 2468)由两个独立的标注者标注。
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引用次数: 0
Heart Murmur Detection Using Ensemble of Deep Learning Classifiers for Phonocardiograms Recorded from Multiple Auscultation Locations 使用深度学习分类器对多个听诊位置记录的心音图进行心脏杂音检测
Pub Date : 2022-09-04 DOI: 10.22489/CinC.2022.241
S. Parvaneh, Zaniar Ardalan, Joomyung Song, Kathan Vyas, C. Potes
A digital phonocardiogram (PCG) provides an opportunity for automated screening in resource-constrained environments. As part of the George B. Moody PhysioNet Challenge 2022, our team, Life_Is _Now, developed a computational approach using an ensemble of deep learning classifiers for identifying abnormal cardiac function from PCG. A stratified 5-fold cross-validation was used for model development and evaluation for murmur and clinical outcome identification. The backbone of our trained classifiers is a modified pre-trained deep convolutional neural network on AudioSet-Youtube corpus (YAMNet) and transfer learning. The YAMNet model is modified and finetuned on the publicly available PhysioNet dataset. Our murmur and clinical outcome classifiers received a weighted accuracy score of 0.831 and a Challenge cost score of 14,850 from cross-validation on the public training set. Our murmur scores were 0.678 and outcome score were 10,518 on the hidden validation set. However, we did not receive the official score for the hidden test set as our entry crashed in evaluation on the test set.
数字心音图(PCG)为资源受限环境下的自动筛查提供了机会。作为2022年George B. Moody PhysioNet挑战赛的一部分,我们的团队Life_Is _Now开发了一种使用深度学习分类器集合的计算方法,用于从PCG中识别异常心功能。分层5重交叉验证用于模型开发和评估杂音和临床结果识别。我们训练的分类器的主干是基于AudioSet-Youtube语料库(YAMNet)和迁移学习的改进预训练深度卷积神经网络。YAMNet模型在公开可用的PhysioNet数据集上进行修改和微调。我们的杂音和临床结果分类器在公共训练集的交叉验证中获得了0.831的加权准确率分数和14850的挑战成本分数。在隐藏验证集上,我们的杂音得分为0.678,结果得分为10,518。但是,我们没有收到隐藏测试集的官方分数,因为我们的条目在测试集的评估中崩溃了。
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引用次数: 0
A Novel Human Atrial Electromechanical Cardiomyocyte Model with Mechano-Calcium Feedback Effect 一种具有机械钙反馈效应的新型人心房机电心肌细胞模型
Pub Date : 2022-09-04 DOI: 10.22489/CinC.2022.195
"Fazeelat Mazhar, Francesco Regazzoni, C. Bartolucci, C. Corsi, L. Dede’, A. Quarteroni, S. Severi
Electromechanical coupling is crucial for modeling a realistic representation of $Ca^{+2}$ transient and $Ca^{+2}$ cycling. Cellular $Ca^{+2}$ dynamics in atria differ fundamentally from the ventricles. A biophysically detailed electrophysiology model is hence necessary to reproduce the experimentally observed phenomena like $Ca^{+2}$ wave propagation in human atrial myocytes. In this work, we present a novel detailed and yet computationally efficient electrophysiology model, its coupling with a contraction myofilament model and the effect of mechano-calcium feedback on coupling. This novel electromechanical model was calibrated for a collection of human atrial data and was evaluated by reproducing the rate adaptation property of action potential, $Ca^{+2}$ transient and the active force. The aim of this article is to present a new electromechanical model for human atrial myocyte and to analyse the mechanism behind the rate adaptation.
机电耦合是模拟真实的$Ca^{+2}$瞬态和$Ca^{+2}$循环的关键。心房细胞Ca^{+2}$的动态与心室有本质区别。因此,需要一个生物物理上详细的电生理模型来重现实验观察到的现象,如Ca^{+2}$波在人心房肌细胞中的传播。在这项工作中,我们提出了一种新的详细的、计算效率高的电生理模型,它与收缩肌丝模型的耦合以及机械钙反馈对耦合的影响。该新颖的机电模型针对人类心房数据进行了校准,并通过再现动作电位、Ca^{+2}$瞬态和主动力的速率适应特性进行了评估。本文的目的是提出一种新的心房肌细胞机电模型,并分析其速率适应的机制。
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引用次数: 0
Does Ectopic Beats Bring More Discriminatory Information to Diagnose Ischemic Heart Disease? 异位心跳是否为缺血性心脏病的诊断提供了更多的歧视性信息?
Pub Date : 2022-09-04 DOI: 10.22489/CinC.2022.199
Katerina Iscra, A. Miladinović, M. Ajčević, Luca Restivo, Simone Kresevic, M. Merlo, G. Sinagra, A. Accardo
Early non-invasive diagnosis of Ischemic Heart Disease (IHD) can often be challenging. HRV features have a potentially important role in risk stratification for subjects with suspected heart disease. However, there is no consensus on the HRV preprocessing steps, particularly on how to properly treat ectopic beats. We aimed to investigate the performance of the models for classification of early IHD versus healthy subjects (HC) based on HRV features extracted from signals excluding ectopic beats and based on the same features extracted from the signals that contain both ectopic and normal heartbeats. This study encompassed 385 subjects (170 IHD and 215 HC). The models were produced by logistic regression method considering two sets of HRV features obtained by two preprocessing approaches. The results showed that the model with the input features from HRV signals including normal and ectopic beats presented a higher classification accuracy (72.7%) than the model based on features extracted only from normal heart beats (67.8%). In addition, the evaluation of the feature importance by analysis of produced nomograms and observed significant differences between features extracted with two preprocessing approaches, showed also that the exclusion of the ectopic beats modifies the features' discriminatory power between HC and IHD.
缺血性心脏病(IHD)的早期非侵入性诊断通常具有挑战性。HRV特征在疑似心脏病患者的风险分层中具有潜在的重要作用。然而,对于心率变异的预处理步骤,特别是如何正确处理异位搏,目前尚无共识。我们的目的是研究基于从不包括异位搏动的信号中提取的HRV特征和基于从包含异位搏动和正常搏动的信号中提取的相同特征的早期IHD与健康受试者(HC)分类模型的性能。本研究包括385名受试者(170名IHD和215名HC)。考虑两种预处理方法获得的两组HRV特征,采用逻辑回归方法生成模型。结果表明,以心率正常值和异位搏为输入特征的模型分类准确率(72.7%)高于仅以正常心跳为输入特征的模型(67.8%)。此外,通过分析生成的模态图来评估特征的重要性,并观察到两种预处理方法提取的特征之间的显著差异,也表明排除异位拍改变了特征在HC和IHD之间的区别力。
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引用次数: 0
Comparison of Newtonian and Non-Newtonian Blood Flow in an Ascending Aortic Aneurysm 升主动脉瘤牛顿与非牛顿血流的比较
Pub Date : 2022-09-04 DOI: 10.22489/CinC.2022.085
A. Petuchova, A. Maknickas
This work aimed to perform a numerical study of aortic hemodynamics and evaluate both Newtonian and non-Newtonian blood flow parameters in an ascending aortic aneurysm model. An aortic model was reconstructed from a medical computed tomography (CT) image, and finite element method laminar blood flow modelling was performed using different blood parameters. The inflow boundary conditions were defined as a flow profile, and the outlet boundary conditions were defined as the pressure at each outlet. The first simulation was calculated by considering blood as a Newtonian fluid, while in the second simulation, using the Carreau model, blood was assumed to be a non-Newtonian fluid. The results showed that average systolic and diastolic velocities were 2% and 9% higher, respectively, for the non-Newtonian fluid. In addition, the wall shear stress (WSS) values on the surface of the aneurysm were 30% higher during systole in the non-Newtonian simulation, while the average WSS on the artery surface in diastole was 20% higher for the Newtonian fluid.
本研究旨在对主动脉血流动力学进行数值研究,并在升主动脉瘤模型中评估牛顿和非牛顿血流参数。利用医学计算机断层扫描(CT)图像重建主动脉模型,并利用不同的血液参数进行有限元层流血流建模。流入边界条件定义为流动剖面,出口边界条件定义为各出口的压力。第一次模拟将血液视为牛顿流体,而在第二次模拟中,使用careau模型,将血液假设为非牛顿流体。结果表明,非牛顿流体的平均收缩和舒张速度分别高出2%和9%。此外,在非牛顿流体模拟中,收缩期动脉瘤表面的壁面剪切应力(WSS)值高出30%,而在牛顿流体模拟中,舒张期动脉表面的平均WSS值高出20%。
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引用次数: 1
Cellular Heterogeneity in the Atria: An In Silico Study in the Impact on Reentries 心房细胞异质性:对再入影响的计算机研究
Pub Date : 2022-09-04 DOI: 10.22489/CinC.2022.296
J. Elliott, Daniele Cinque, L. Mainardi, J. F. R. Matas
In-silico modelling is increasingly relied upon to gain new insights into the underlying mechanisms of atrial fibrillation. Due to the complex nature of the atria, insilico models typically exclude cellular heterogeneity. One question that remains unanswered is the impact of cellular heterogeneity on reentrant mechanisms and in the vulnerable window (VW). This study aims to present the impact of cellular heterogeneity on the AF mechanisms and susceptibility to re-entry behaviour. Cellular heterogeneity was introduced into the whole atrial model using the population of models approach and regionally specific node assignment. Each atrial model was stimulated from the SA node, followed by a series of rapid-paced ectopic beats at one of three locations in the left atria. Results showed a small, insignificant increase in reentrant frequency as a result of cellular heterogeneity, with only minor changes to the re-entrant circuit. However, the vulnerable window was significantly impacted through the introduction of cellular heterogeneity. The results suggest that cellular heterogeneity in the atrial model resulted in an increased VW for reentry depending on EB location. This suggests that local cellular heterogeneity plays a significant role in the susceptibility to re-entries, but does not significantly impact the path or frequency of re-entries.
在计算机模拟越来越依赖于获得新的见解心房颤动的潜在机制。由于心房的复杂性,硅模型通常排除细胞异质性。一个尚未解决的问题是细胞异质性对可重入机制和脆弱窗口(VW)的影响。本研究旨在揭示细胞异质性对房颤机制和再入行为易感性的影响。利用模型群体方法和区域特异性节点分配,将细胞异质性引入整个心房模型。每个心房模型从窦房结刺激,随后在左心房的三个位置之一进行一系列快节奏异位搏动。结果显示,由于细胞的异质性,重入频率有微小的、不显著的增加,而重入电路只有微小的变化。然而,脆弱窗口通过引入细胞异质性而受到显著影响。结果表明,心房模型的细胞异质性导致EB位置不同的再入VW增加。这表明,局部细胞异质性在重新进入的易感性中起着重要作用,但对重新进入的路径或频率没有显著影响。
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引用次数: 0
Association Between Photoplethysmography Pulse Upslope and Cardiovascular Events in over 170,000 UK Biobank Participants 在超过170,000名英国生物银行参与者中,光容积脉搏图脉冲上坡与心血管事件之间的关系
Pub Date : 2022-09-04 DOI: 10.22489/CinC.2022.226
"Michele Orini, S. van Duijvenboden, A. Tinker, P. Munroe, P. Lambiase
Photoplethysmography (PPG) is used in many wearable devices and it is becoming the most commonly measured cardiovascular signal, but its association with cardiovascular events is undetermined. This study uses data from the UK Biobank to assess the association between PPG morphological features and risk of cardiovascular (CV) events. N=175,284 individuals without CV disease were included (44.6% male, $56.4pm 8.1$ years old). A single finger PPG waveform of 101 data points, evenly sampled over the cycle length was available. The PPG waveforms were normalized between 0 and 1 and the maximum of the first derivative during the pulse's upslope was measured $(x_{MAX}^{prime})$. Cox regressions were used to assess the association between $x_{MAX}^{prime}$ and mortality and cardiovascular events. After a median follow-up period of 11.2 years, incidence of all-cause mortality (ACM), myocardial infarction (MI), heart failure (HF), atrial fibrillation (AF) and stroke (STR), ranged between 2.1% and 5.2%. A reduction of 1 standard deviation in $x_{MAX}^{prime}$ was associated with increased risk of all outcomes with hazard ratio between 1.20 and 1.30. After adjusting for sex, age, and body mass index, associations remained significant for all outcomes except AF.
光电容积脉搏波(PPG)在许多可穿戴设备中使用,并成为最常用的测量心血管信号,但其与心血管事件的关系尚不确定。本研究使用来自UK Biobank的数据来评估PPG形态学特征与心血管事件风险之间的关系。N=175,284名无CV疾病的个体(44.6%为男性,56.4美元/小时8.1美元)。单指PPG波形包含101个数据点,在周期长度上均匀采样。PPG波形在0和1之间归一化,并测量脉冲上坡期间一阶导数的最大值$(x_{MAX}^{prime})$。采用Cox回归评估$x_{MAX}^{prime}$与死亡率和心血管事件之间的关系。在11.2年的中位随访期后,全因死亡率(ACM)、心肌梗死(MI)、心力衰竭(HF)、心房颤动(AF)和中风(STR)的发生率在2.1%至5.2%之间。$x_{MAX}^{prime}$减少1个标准差与所有结果的风险增加相关,风险比在1.20至1.30之间。在调整性别、年龄和体重指数后,除房颤外,所有结果的相关性仍然显著。
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引用次数: 0
AI-Enabled ECG Combined with Dry Electrode Sensors for Population-Based Screening of Atrial Fibrillation 人工智能心电图结合干电极传感器用于人群心房颤动筛查
Pub Date : 2022-09-04 DOI: 10.22489/CinC.2022.312
Alan Kennedy, D. Finlay, R. Bond, D. Guldenring, J. Mclaughlin, Chris Crockford"
This study assessed the performance of a deep neural network (PulseAI, Belfast, United Kingdom) used in conjunction with a dry-electrode ECG sensor device (RhythmPad, D&FT, United Kingdom) to detect AF automatically. Simultaneous pairs of 12-lead ECGs and single-lead dry-electrode ECGs were collected from 622 patients. The 12-lead ECGs were manually overread and used as reference diagnoses. Twenty-two patients were confirmed with AF and had an interpretable 12-lead and single-lead dry-electrode ECG recording. The deep neural network analysed the dry-electrode ECGs, and performance was compared to the 12-lead interpretation. Overall, the deep neural network algorithm yielded a sensitivity of 96% (95% CI, 87%-100%), specificity of 99% (95% CI, 98%-100%) and positive predictive value of 81% (95% CI, 66%-96%) for detection of AF episodes. When coupled with dry-electrode ECG sensors, the PulseAI neural network allows for large-scale and low-cost screening for AF. Widespread implementation of this technology may allow for earlier detection, treatment, and management of patients with AF.
本研究评估了深度神经网络(PulseAI,贝尔法斯特,英国)与干电极心电传感器设备(RhythmPad, D&FT,英国)结合使用来自动检测AF的性能。对622例患者同时采集12导联心电图和单导联干电极心电图。12导联心电图被人工过读并用作参考诊断。22例患者被确诊为房颤,并有可解释的12导联和单导联干电极心电图记录。深度神经网络分析了干电极心电图,并将其性能与12导联解释进行了比较。总体而言,深度神经网络算法检测AF发作的灵敏度为96% (95% CI, 87%-100%),特异性为99% (95% CI, 98%-100%),阳性预测值为81% (95% CI, 66%-96%)。当与干电极ECG传感器相结合时,PulseAI神经网络可以进行大规模和低成本的房颤筛查。该技术的广泛应用可以使房颤患者的早期检测、治疗和管理成为可能。
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引用次数: 0
Pulse Wave Analysis of Photoplethysmography Signals to Enhance Classification of Cardiac Arrhythmias 光容积脉搏波信号的脉搏波分析增强心律失常的分类
Pub Date : 2022-09-04 DOI: 10.22489/CinC.2022.023
Loïc Jeanningros, F. Braun, J. V. Zaen, M. L. Bloa, A. Porretta, C. Teres, C. Herrera, G. Domenichini, Patrice Carroz, D. Graf, P. Pascale, J. Vesin, J. Thiran, E. Pruvot, M. Lemay
Photoplethysmography (PPG) has recently gained increasing interest for less obtrusive long-term cardiovascular monitoring. As for cardiac arrhythmia (CA), most research and available PPG devices have focused on the detection of atrial fibrillation (AF), the most common CA. However, other less studied CAs can induce errors in standard AF detectors. To address the PPG-based detection of both AF and non-AF CAs, we investigate novel features, extracted by pulse wave analysis (PWA), that provide insight into the morphology of individual pulses. Their discriminative power was evaluated based on the RELIEFF algorithm for feature selection, and we compared performance metrics for CA classification with and without PWA features. The classification accuracy using ridge regression was increased by 0.4%, from 75.6% to 76.0%, when using PWA features on top of temporal and spectral features. Likewise, the classification of non-AF CAs was globally improved. These results show the potential of extracting measures about individual pulse morphologies to improve detection of various CAs.
近年来,光容积脉搏波(PPG)越来越多地被用于不那么突兀的长期心血管监测。对于心律失常(CA),大多数研究和现有的PPG设备都集中在房颤(AF)的检测上,这是最常见的CA。然而,其他研究较少的CA可能会导致标准AF检测器的错误。为了解决基于ppg的AF和非AF ca检测,我们研究了通过脉冲波分析(PWA)提取的新特征,这些特征提供了对单个脉冲形态的洞察。基于特征选择的RELIEFF算法评估了它们的判别能力,并比较了有和没有PWA特征的CA分类的性能指标。在时序和光谱特征基础上结合PWA特征,岭回归的分类准确率从75.6%提高到76.0%,提高了0.4%。同样,非房颤ca的分类也在全球范围内得到了改进。这些结果表明,提取单个脉冲形态的措施可以提高对各种ca的检测。
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引用次数: 0
期刊
2022 Computing in Cardiology (CinC)
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