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Characterization of enhancer fragments in Drosophila robo2. 果蝇 robo2 中增强子片段的特征。
IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Fly
Pub Date : 2022-12-01 DOI: 10.1080/19336934.2022.2126259
Gina Hauptman, Marie C Reichert, Muna A Abdal Rhida, Timothy A Evans

Receptor proteins of the Roundabout (Robo) family regulate axon guidance decisions during nervous system development. Among the three Drosophila robo family genes (robo1, robo2 and robo3), robo2 displays a dynamic expression pattern and regulates multiple axon guidance outcomes, including preventing midline crossing in some axons, promoting midline crossing in others, forming lateral longitudinal axon pathways, and regulating motor axon guidance. The identity and location of enhancer elements regulating robo2's complex and dynamic expression pattern in different neural cell types are unknown. Here, we characterize a set of 17 transgenic lines expressing GAL4 under the control of DNA sequences derived from noncoding regions in and around robo2, to identify enhancers controlling specific aspects of robo2 expression in the embryonic ventral nerve cord. We identify individual fragments that confer expression in specific cell types where robo2 is known to function, including early pioneer neurons, midline glia and lateral longitudinal neurons. Our results indicate that robo2's dynamic expression pattern is specified by a combination of enhancer elements that are active in different subsets of cells. We show that robo2's expression in lateral longitudinal axons represents two genetically separable subsets of neurons, and compare their axon projections with each other and with Fasciclin II (FasII), a commonly used marker of longitudinal axon pathways. In addition, we provide a general description of each fragment's expression in embryonic tissues outside of the nervous system, to serve as a resource for other researchers interested in robo2 expression and its functional roles outside the central nervous system.

Roundabout(Robo)家族的受体蛋白调控神经系统发育过程中的轴突导向决策。在果蝇robo家族的三个基因(robo1、robo2和robo3)中,robo2显示出动态的表达模式,并调控多种轴突导向结果,包括防止某些轴突的中线交叉,促进另一些轴突的中线交叉,形成横向纵向轴突通路,以及调控运动轴突导向。调节robo2在不同神经细胞类型中复杂和动态表达模式的增强子元件的身份和位置尚不清楚。在此,我们鉴定了一组 17 个表达 GAL4 的转基因品系,这些品系受来自 robo2 中和周围非编码区的 DNA 序列控制,以确定控制胚胎腹侧神经索中 robo2 表达特定方面的增强子。我们确定了在已知robo2发挥作用的特定细胞类型(包括早期先驱神经元、中线胶质细胞和侧纵神经元)中赋予表达的单个片段。我们的研究结果表明,robo2 的动态表达模式是由在不同细胞亚群中活跃的增强子元件组合指定的。我们发现,robo2 在侧纵轴突中的表达代表了两个在基因上可分离的神经元亚群,并将它们的轴突投射与纵轴突通路的常用标记法氏林 II(FasII)进行了比较。此外,我们还对每个片段在神经系统以外的胚胎组织中的表达进行了概括性描述,为其他对 robo2 的表达及其在中枢神经系统以外的功能作用感兴趣的研究人员提供资源。
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引用次数: 0
The chemosensory system of the Drosophila larva: an overview of current understanding. 果蝇幼虫的化学感觉系统:当前认识的概述。
IF 1.2 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Fly
Pub Date : 2022-12-01 DOI: 10.1080/19336934.2021.1953364
Nikita Komarov, Simon G Sprecher

Animals must sense their surroundings and be able to distinguish between relevant and irrelevant cues. An enticing area of research aims to uncover the mechanisms by which animals respond to chemical signals that constitute critical sensory input. In this review, we describe the principles of a model chemosensory system: the Drosophila larva. While distinct in many ways, larval behaviour is reminiscent of the dogmatic goals of life: to reach a stage of reproductive potential. It takes into account a number of distinct and identifiable parameters to ultimately provoke or modulate appropriate behavioural output. In this light, we describe current knowledge of chemosensory anatomy, genetic components, and the processing logic of chemical cues. We outline recent advancements and summarize the hypothesized neural circuits of sensory systems. Furthermore, we note yet-unanswered questions to create a basis for further investigation of molecular and systemic mechanisms of chemosensation in Drosophila and beyond.

动物必须感知周围环境,并能够区分相关和不相关的线索。一个诱人的研究领域旨在揭示动物对构成关键感官输入的化学信号作出反应的机制。在这篇综述中,我们描述了一个模型化学感觉系统的原理:果蝇幼虫。幼虫的行为虽然在许多方面不同,但却使人联想到生命的教条目标:达到具有生殖潜力的阶段。它考虑到一些不同的和可识别的参数,最终激发或调节适当的行为输出。在这种情况下,我们描述了化学感觉解剖学,遗传成分和化学线索的处理逻辑的当前知识。我们概述了最近的进展,并总结了假设的感觉系统的神经回路。此外,我们注意到尚未解决的问题,为进一步研究果蝇和其他动物的化学感觉的分子和系统机制奠定基础。
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引用次数: 3
Cellular mechanisms underlying adult tissue plasticity in Drosophila. 果蝇成体组织可塑性的细胞机制。
IF 1.2 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Fly
Pub Date : 2022-12-01 DOI: 10.1080/19336934.2022.2066952
Hiroki Nagai, Masayuki Miura, Yu-Ichiro Nakajima

Adult tissues in Metazoa dynamically remodel their structures in response to environmental challenges including sudden injury, pathogen infection, and nutritional fluctuation, while maintaining quiescence under homoeostatic conditions. This characteristic, hereafter referred to as adult tissue plasticity, can prevent tissue dysfunction and improve the fitness of organisms in continuous and/or severe change of environments. With its relatively simple tissue structures and genetic tools, studies using the fruit fly Drosophila melanogaster have provided insights into molecular mechanisms that control cellular responses, particularly during regeneration and nutrient adaptation. In this review, we present the current understanding of cellular mechanisms, stem cell proliferation, polyploidization, and cell fate plasticity, all of which enable adult tissue plasticity in various Drosophila adult organs including the midgut, the brain, and the gonad, and discuss the organismal strategy in response to environmental changes and future directions of the research.

后生动物的成体组织在适应突发伤害、病原体感染和营养波动等环境挑战时动态重塑其结构,同时在稳态条件下保持静止。这种特性下文称为成体组织可塑性,它可以防止组织功能障碍,提高生物体在持续和/或剧烈环境变化中的适应性。由于其相对简单的组织结构和遗传工具,对果蝇的研究提供了控制细胞反应的分子机制,特别是在再生和营养适应过程中。本文从细胞机制、干细胞增殖、多倍体化、细胞命运可塑性等方面综述了果蝇成体器官(包括中肠、大脑和性腺)成体组织可塑性的形成机制,并讨论了适应环境变化的组织策略和未来的研究方向。
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引用次数: 5
Cell-cell interactions that drive tumorigenesis in Drosophila. 驱动果蝇肿瘤发生的细胞-细胞相互作用。
IF 1.2 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Fly
Pub Date : 2022-12-01 DOI: 10.1080/19336934.2022.2148828
Masato Enomoto, Tatsushi Igaki

Cell-cell interactions within tumour microenvironment play crucial roles in tumorigenesis. Genetic mosaic techniques available in Drosophila have provided a powerful platform to study the basic principles of tumour growth and progression via cell-cell communications. This led to the identification of oncogenic cell-cell interactions triggered by endocytic dysregulation, mitochondrial dysfunction, cell polarity defects, or Src activation in Drosophila imaginal epithelia. Such oncogenic cooperations can be caused by interactions among epithelial cells, mesenchymal cells, and immune cells. Moreover, microenvironmental factors such as nutrients, local tissue structures, and endogenous growth signalling activities critically affect tumorigenesis. Dissecting various types of oncogenic cell-cell interactions at the single-cell level in Drosophila will greatly increase our understanding of how tumours progress in living animals.

肿瘤微环境中细胞与细胞的相互作用在肿瘤发生中起着至关重要的作用。果蝇遗传镶嵌技术为研究肿瘤生长和进展的基本原理提供了一个强大的平台。这导致在果蝇想象上皮中鉴定出由内吞失调、线粒体功能障碍、细胞极性缺陷或Src激活引发的致癌细胞-细胞相互作用。这种致癌性合作可由上皮细胞、间充质细胞和免疫细胞之间的相互作用引起。此外,微环境因素如营养物质、局部组织结构和内源性生长信号活动对肿瘤的发生有重要影响。在果蝇的单细胞水平上解剖各种类型的致癌细胞-细胞相互作用将大大增加我们对肿瘤如何在活体动物中发展的理解。
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引用次数: 2
A standardized nomenclature and atlas of the female terminalia of Drosophila melanogaster. 黑腹果蝇雌性末端的标准命名法和图集。
IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Fly
Pub Date : 2022-12-01 DOI: 10.1080/19336934.2022.2058309
Eden W McQueen, Mehrnaz Afkhami, Joel Atallah, John M Belote, Nicolas Gompel, Yael Heifetz, Yoshitaka Kamimura, Shani C Kornhauser, John P Masly, Patrick O'Grady, Julianne Peláez, Mark Rebeiz, Gavin Rice, Ernesto Sánchez-Herrero, Maria Daniela Santos Nunes, Augusto Santos Rampasso, Sandra L Schnakenberg, Mark L Siegal, Aya Takahashi, Kentaro M Tanaka, Natascha Turetzek, Einat Zelinger, Virginie Courtier-Orgogozo, Masanori J Toda, Mariana F Wolfner, Amir Yassin

The model organism Drosophila melanogaster has become a focal system for investigations of rapidly evolving genital morphology as well as the development and functions of insect reproductive structures. To follow up on a previous paper outlining unifying terminology for the structures of the male terminalia in this species, we offer here a detailed description of the female terminalia of D. melanogaster. Informative diagrams and micrographs are presented to provide a comprehensive overview of the external and internal reproductive structures of females. We propose a collection of terms and definitions to standardize the terminology associated with the female terminalia in D. melanogaster and we provide a correspondence table with the terms previously used. Unifying terminology for both males and females in this species will help to facilitate communication between various disciplines, as well as aid in synthesizing research across publications within a discipline that has historically focused principally on male features. Our efforts to refine and standardize the terminology should expand the utility of this important model system for addressing questions related to the development and evolution of animal genitalia, and morphology in general.

模式生物黑腹果蝇(Drosophila melanogaster)已成为研究快速进化的生殖形态以及昆虫生殖结构发育和功能的焦点系统。在之前的一篇论文中,我们概述了该物种雄性末端结构的统一术语,我们在这里提供了D. melanogaster雌性末端的详细描述。信息图表和显微照片提供了一个全面的概述外部和内部的生殖结构的女性。我们提出了一套术语和定义集,以规范与黑腹龙雌性术语相关的术语,并提供了一个与以前使用的术语对应表。统一这一物种中雄性和雌性的术语将有助于促进不同学科之间的交流,也有助于在一个历史上主要关注男性特征的学科内的出版物中综合研究。我们对术语的完善和标准化的努力应该扩大这一重要模型系统的实用性,以解决与动物生殖器的发育和进化以及一般形态学有关的问题。
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引用次数: 0
Cell mechanics and cell-cell recognition controls by Toll-like receptors in tissue morphogenesis and homeostasis Toll样受体在组织形态发生和稳态中的细胞力学和细胞-细胞识别控制
IF 1.2 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Fly
Pub Date : 2022-05-17 DOI: 10.1080/19336934.2022.2074783
Daiki Umetsu
ABSTRACT Signal transduction by the Toll-like receptors (TLRs) is conserved and essential for innate immunity in metazoans. The founding member of the TLR family, Drosophila Toll-1, was initially identified for its role in dorsoventral axis formation in early embryogenesis. The Drosophila genome encodes nine TLRs that display dynamic expression patterns during development, suggesting their involvement in tissue morphogenesis and homeostasis. Recent progress on the developmental functions of TLRs beyond dorsoventral patterning has revealed not only their diverse functions in various biological processes, but also unprecedented molecular mechanisms in directly regulating cell mechanics and cell-cell recognition independent of the canonical signal transduction pathway involving transcriptional regulation of target genes. In this review, I feature and discuss the non-immune functions of TLRs in the control of epithelial tissue homeostasis, tissue morphogenesis, and cell-cell recognition between cell populations with different cell identities.
Toll样受体(TLRs)的信号转导在后生动物的先天免疫中是保守的和必要的。TLR家族的创始成员Drosophila Toll-1最初因其在早期胚胎发生中的背心轴形成中的作用而被鉴定。果蝇基因组编码9个TLR,这些TLR在发育过程中表现出动态表达模式,表明它们参与组织形态发生和稳态。TLRs在背腔模式之外的发育功能的最新进展不仅揭示了它们在各种生物过程中的不同功能,而且揭示了它们直接调节细胞力学和细胞-细胞识别的前所未有的分子机制,而不依赖于涉及靶基因转录调控的经典信号转导途径。在这篇综述中,我介绍并讨论了TLRs在控制上皮组织稳态、组织形态发生和具有不同细胞身份的细胞群体之间的细胞-细胞识别方面的非免疫功能。
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引用次数: 5
Cutting edge technologies expose the temporal regulation of neurogenesis in the Drosophila nervous system 尖端技术揭示了果蝇神经系统神经发生的时间调节
IF 1.2 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Fly
Pub Date : 2022-05-13 DOI: 10.1080/19336934.2022.2073158
Makoto Sato, Takumi Suzuki
ABSTRACT During the development of the central nervous system (CNS), extremely large numbers of neurons are produced in a regular fashion to form precise neural circuits. During this process, neural progenitor cells produce different neurons over time due to their intrinsic gene regulatory mechanisms as well as extrinsic mechanisms. The Drosophila CNS has played an important role in elucidating the temporal mechanisms that control neurogenesis over time. It has been shown that a series of temporal transcription factors are sequentially expressed in neural progenitor cells and regulate the temporal specification of neurons in the embryonic CNS. Additionally, similar mechanisms are found in the developing optic lobe and central brain in the larval CNS. However, it is difficult to elucidate the function of numerous molecules in many different cell types solely by molecular genetic approaches. Recently, omics analysis using single-cell RNA-seq and other methods has been used to study the Drosophila nervous system on a large scale and is making a significant contribution to the understanding of the temporal mechanisms of neurogenesis. In this article, recent findings on the temporal patterning of neurogenesis and the contributions of cutting-edge technologies will be reviewed.
在中枢神经系统(central nervous system, CNS)的发育过程中,有规律地产生大量神经元,形成精确的神经回路。在这一过程中,神经祖细胞由于其内在的基因调控机制和外在的机制,随着时间的推移产生不同的神经元。果蝇中枢神经系统在阐明控制神经发生的时间机制方面发挥了重要作用。研究表明,在胚胎中枢神经系统中,一系列时间转录因子在神经祖细胞中有序表达,并调节神经元的时间特异性。此外,在幼虫中枢神经系统发育中的视叶和中央脑中也发现了类似的机制。然而,仅通过分子遗传学方法很难阐明许多不同细胞类型中许多分子的功能。近年来,利用单细胞RNA-seq等方法进行组学分析已被用于果蝇神经系统的大规模研究,为理解神经发生的时间机制做出了重要贡献。本文将对神经发生的时间模式的最新研究成果和前沿技术的贡献进行综述。
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引用次数: 1
Biology and ecology of the Oriental flower-breeding Drosophila elegans and related species 东方繁花果蝇及其近缘种的生物学与生态学
IF 1.2 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Fly
Pub Date : 2022-05-01 DOI: 10.1080/19336934.2022.2066953
Yuki Ishikawa, M. Kimura, M. Toda
ABSTRACT Animals adapt to their environments in the course of evolution. One effective approach to elucidate mechanisms of adaptive evolution is to compare closely related species with model organisms in which knowledge of the molecular and physiological bases of various traits has been accumulated. Drosophila elegans and its close relatives, belonging to the same species group as the model organism D. melanogaster, exhibit various unique characteristics such as flower-breeding habit, courtship display, territoriality, sexual dimorphism, and colour polymorphism. Their ease of culturing and availability of genomic information makes them a useful model for understanding mechanisms of adaptive evolution. Here, we review the morphology, distribution, and phylogenetic relationships of D. elegans and related species, as well as their characteristic flower-dependent biology, food habits, and life-history traits. We also describe their unique mating and territorial behaviours and note their distinctive karyotype and the genetic mechanisms of morphological diversity that have recently been revealed.
动物在进化过程中适应环境。研究适应进化机制的一种有效方法是将亲缘关系密切的物种与模式生物进行比较,在模式生物中积累了各种特征的分子和生理基础知识。秀丽果蝇及其近亲与模式生物黑腹果蝇同属一个物种群,在繁花习性、求偶行为、领地性、两性二态性和颜色多态性等方面表现出许多独特的特征。它们的易于培养和基因组信息的可用性使它们成为理解适应性进化机制的有用模型。本文综述了线虫及其近缘种的形态、分布和系统发育关系,以及它们特有的依赖花朵的生物学特性、食性和生活史特征。我们还描述了它们独特的交配和领土行为,并注意到它们独特的核型和最近揭示的形态多样性的遗传机制。
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引用次数: 4
The developing wing crossvein of Drosophila melanogaster: a fascinating model for signaling and morphogenesis 黑腹果蝇正在发育的翅膀横静脉:一个迷人的信号传导和形态发生模型
IF 1.2 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Fly
Pub Date : 2022-03-18 DOI: 10.1080/19336934.2022.2040316
Hanna Antson, Tambet Tõnissoo, O. Shimmi
ABSTRACT The Drosophila wing has been used as a model for studying tissue growth, morphogenesis and pattern formation. The wing veins of Drosophila are composed of two distinct structures, longitudinal veins and crossveins. Although positional information of longitudinal veins is largely defined in the wing imaginal disc during the larval stage, crossvein primordial cells appear to be naive until the early pupal stage. Here, we first review how wing crossveins have been investigated in the past. Then, the developmental mechanisms underlying crossvein formation are summarized. This review focuses on how a conserved trafficking mechanism of BMP ligands is utilized for crossvein formation, and how various co-factors play roles in sustaining BMP signalling. Recent findings further reveal that crossvein development serves as an excellent model to address how BMP signal and dynamic cellular processes are coupled. This comprehensive review illustrates the uniqueness, scientific value and future perspectives of wing crossvein development as a model.
摘要:果蝇翅膀已被用作研究组织生长、形态发生和模式形成的模型。果蝇的翼脉由两种不同的结构组成,纵脉和横脉。尽管在幼虫阶段,纵静脉的位置信息在很大程度上是在翅膀想象盘中确定的,但横静脉原始细胞在蛹早期之前似乎是幼稚的。在这里,我们首先回顾一下过去是如何研究机翼横静脉的。然后,总结了横脉形成的发育机制。这篇综述的重点是BMP配体的保守运输机制如何用于横静脉形成,以及各种辅助因子如何在维持BMP信号传导中发挥作用。最近的研究结果进一步表明,交叉静脉发育是解决BMP信号和动态细胞过程如何耦合的极好模型。这篇全面的综述说明了机翼横静脉发展模型的独特性、科学价值和未来前景。
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引用次数: 3
Structure-function analysis of Cdc25Twine degradation at the Drosophila maternal-to-zygotic transition Cdc25Twine在果蝇母体向合子转化过程中降解的结构-功能分析
IF 1.2 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Fly
Pub Date : 2022-02-28 DOI: 10.1080/19336934.2022.2043095
P. Ferree, Maggie Xing, Jenny Zhang, Stefano Di Talia
ABSTRACT Downregulation of protein phosphatase Cdc25Twine activity is linked to remodelling of the cell cycle during the Drosophila maternal-to-zygotic transition (MZT). Here, we present a structure-function analysis of Cdc25Twine. We use chimeras to show that the N-terminus regions of Cdc25Twine and Cdc25String control their differential degradation dynamics. Deletion of different regions of Cdc25Twine reveals a putative domain involved in and required for its rapid degradation during the MZT. Notably, a very similar domain is present in Cdc25String and deletion of the DNA replication checkpoint results in similar dynamics of degradation of both Cdc25String and Cdc25Twine. Finally, we show that Cdc25Twine degradation is delayed in embryos lacking the left arm of chromosome III. Thus, we propose a model for the differential regulation of Cdc25 at the Drosophila MZT.
蛋白磷酸酶Cdc25Twine活性的下调与果蝇母系到合子转变(MZT)期间细胞周期的重塑有关。本文对Cdc25Twine进行了结构-功能分析。我们用嵌合体证明了Cdc25Twine和Cdc25String的n端区域控制着它们的微分降解动力学。Cdc25Twine的不同区域的缺失揭示了在MZT期间其快速降解所涉及和需要的假设结构域。值得注意的是,Cdc25String中存在一个非常相似的结构域,DNA复制检查点的删除导致Cdc25String和Cdc25Twine的降解动力学相似。最后,我们发现在缺少三号染色体左臂的胚胎中,Cdc25Twine的降解被延迟。因此,我们提出了Cdc25在果蝇MZT上的差异调控模型。
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引用次数: 0
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