Pub Date : 2024-05-30DOI: 10.3389/fevo.2024.1346397
Petra Thorpert, Åsa Ode Sang, Ishi Buffam
Green roofs are vegetation systems that are particularly well-suited to dense urban environments, and can contribute multiple ecosystem services that support biodiversity, human health, and well-being. Several health benefits are dependent on the way that people perceive the characteristics of the vegetation on the green roof, that is, their environmental appraisal. In this study we set out to explore the effects of different types of green roof vegetation, along with seasonal and successional variations, on visual aesthetical experiences, as well as perceived biodiversity. An online photo elicitation survey was conducted using standardised photographs of a selection of green roofs in Malmö, Sweden, during three different seasons. In the survey, members of the public were asked to evaluate different aesthetic qualities, and to estimate biodiversity and the stress reducing capacity for each photograph. Results showed statistical differences among roof types and by season and successional stage in terms of perceived colour, perceived biodiversity, aesthetic quality, and restorative effects, where the observed differences in perceived values were largely driven by the colour frame of the green roof. Lower scores were associated with a high percentage of red or brown-red shades (p<0.001), while higher scores were associated with a high percentages of green or white (p<0.001). The results of the study therefore have the potential to inform green roof management strategies.
{"title":"Seasonal variation in preference for green roof vegetation","authors":"Petra Thorpert, Åsa Ode Sang, Ishi Buffam","doi":"10.3389/fevo.2024.1346397","DOIUrl":"https://doi.org/10.3389/fevo.2024.1346397","url":null,"abstract":"Green roofs are vegetation systems that are particularly well-suited to dense urban environments, and can contribute multiple ecosystem services that support biodiversity, human health, and well-being. Several health benefits are dependent on the way that people perceive the characteristics of the vegetation on the green roof, that is, their environmental appraisal. In this study we set out to explore the effects of different types of green roof vegetation, along with seasonal and successional variations, on visual aesthetical experiences, as well as perceived biodiversity. An online photo elicitation survey was conducted using standardised photographs of a selection of green roofs in Malmö, Sweden, during three different seasons. In the survey, members of the public were asked to evaluate different aesthetic qualities, and to estimate biodiversity and the stress reducing capacity for each photograph. Results showed statistical differences among roof types and by season and successional stage in terms of perceived colour, perceived biodiversity, aesthetic quality, and restorative effects, where the observed differences in perceived values were largely driven by the colour frame of the green roof. Lower scores were associated with a high percentage of red or brown-red shades (p&lt;0.001), while higher scores were associated with a high percentages of green or white (p&lt;0.001). The results of the study therefore have the potential to inform green roof management strategies.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":"73 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141192323","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-30DOI: 10.3389/fevo.2024.1360714
Natalia Mannise, Mariana Cosse, Gonzalo Greif, Nadia Bou, Carlos Robello, Susana González, Andres Iriarte
Pampas and crab-eating foxes are medium-sized canids living in sympatry in the middle east of South America. Studies on the diet composition of these species provide a deep understanding of their ecological roles in the ecosystem structure and regulation. Using the metabarcoding technique, we analyzed the diet of both fox species in order to identify the vertebrate taxa included as food items. A fragment of the 12S ribosomal gene of the mtDNA was amplified using DNA extracted from 27 scat samples collected in south-central Uruguay during cold (June 2015) and warm (January – April 2016) seasons. A fox DNA blocking primer was designed to minimize the host amplicon products, and pooled samples were sequenced through paired-end reads (100 bp library) on a MiSeq Illumina Platform. The generated sequences were compared to a reference database built with sequences available in GenBank. In concordance with previous studies using traditional methods, we found that the most common food taxon were rodents. Qualitative differences in diet composition between both fox species were identified. Armadillo species were only found in pampas fox diet, while a greater variety of amphibians and birds were detected in crab-eating fox feces. Additionally, an innovative approach to differentiate between real and artifact sequences was employed. This method was based on comparing mutations at conserved and non-conserved positions within the secondary structure of the 12S rRNA, combined with network sequence reconstruction. Our results demonstrate the efficacy of the methodology in detecting the food species present in both fox diets, enabling the evaluation of intraspecific diversity among these species and facilitating the discarding of sequencing errors. This makes the methodology applicable to a wide range of studies.
潘帕斯狐和食蟹狐是生活在南美洲中东部的中型犬科动物。对这两种狐狸食物组成的研究有助于深入了解它们在生态系统结构和调节中的作用。我们利用代谢编码技术分析了两种狐狸的食物,以确定作为食物的脊椎动物类群。我们使用从乌拉圭中南部寒冷季节(2015年6月)和温暖季节(2016年1月至4月)采集的27份粪便样本中提取的DNA,扩增了mtDNA的12S核糖体基因片段。设计了一种狐狸 DNA 阻断引物,以尽量减少宿主扩增产物,并在 MiSeq Illumina 平台上通过成对末端读数(100 bp 文库)对汇集的样本进行测序。生成的序列与根据 GenBank 中的序列建立的参考数据库进行了比较。与之前使用传统方法进行的研究一致,我们发现最常见的食物分类群是啮齿类动物。我们发现两种狐狸的食物组成存在质的差异。在潘帕斯狐的食物中只发现了犰狳类,而在食蟹狐的粪便中发现了更多种类的两栖动物和鸟类。此外,还采用了一种创新方法来区分真实序列和伪造序列。该方法基于比较 12S rRNA 二级结构中保守和非保守位置的突变,并结合网络序列重建。我们的研究结果表明,该方法能有效地检测出两种狐狸食物中的食物种类,从而评估这些种类的种内多样性,并有助于剔除测序错误。这使得该方法适用于广泛的研究。
{"title":"Developing a DNA metabarcoding method to identify diet taxa in Neotropical foxes","authors":"Natalia Mannise, Mariana Cosse, Gonzalo Greif, Nadia Bou, Carlos Robello, Susana González, Andres Iriarte","doi":"10.3389/fevo.2024.1360714","DOIUrl":"https://doi.org/10.3389/fevo.2024.1360714","url":null,"abstract":"Pampas and crab-eating foxes are medium-sized canids living in sympatry in the middle east of South America. Studies on the diet composition of these species provide a deep understanding of their ecological roles in the ecosystem structure and regulation. Using the metabarcoding technique, we analyzed the diet of both fox species in order to identify the vertebrate taxa included as food items. A fragment of the 12S ribosomal gene of the mtDNA was amplified using DNA extracted from 27 scat samples collected in south-central Uruguay during cold (June 2015) and warm (January – April 2016) seasons. A fox DNA blocking primer was designed to minimize the host amplicon products, and pooled samples were sequenced through paired-end reads (100 bp library) on a MiSeq Illumina Platform. The generated sequences were compared to a reference database built with sequences available in GenBank. In concordance with previous studies using traditional methods, we found that the most common food taxon were rodents. Qualitative differences in diet composition between both fox species were identified. Armadillo species were only found in pampas fox diet, while a greater variety of amphibians and birds were detected in crab-eating fox feces. Additionally, an innovative approach to differentiate between real and artifact sequences was employed. This method was based on comparing mutations at conserved and non-conserved positions within the secondary structure of the 12S rRNA, combined with network sequence reconstruction. Our results demonstrate the efficacy of the methodology in detecting the food species present in both fox diets, enabling the evaluation of intraspecific diversity among these species and facilitating the discarding of sequencing errors. This makes the methodology applicable to a wide range of studies.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":"43 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141192322","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-28DOI: 10.3389/fevo.2024.1305931
Beulah Garner, Louise Allan, Robyn Crowther, Lizzy Devenish, Phaedra Kokkini, Laurence Livermore, Nicola Lowndes, Krisztina Lohonya, Ben Price, Peter Wing, Alfried P. Vogler
IntroductionHistoric museum collections hold a wealth of biodiversity data that are essential to our understanding of the rapidly changing natural world. Novel curatorial practices are needed to extract and digitise these data, especially for the innumerable pinned insects whose collecting information is held on small labels.MethodsWe piloted semi-automated specimen imaging and digitisation of specimen labels for a collection of ~29,000 pinned insects of ground beetles (Carabidae: Lebiinae) held at the Natural History Museum, London. Raw transcription data were curated against literature sources and non-digital collection records. The primary data were subjected to statistical analyses to infer trends in collection activities and descriptive taxonomy over the past two centuries.ResultsThis work produced research-ready digitised records for 2,546 species (40% of known species of Lebiinae). Label information was available on geography in 91% of identified specimens, and the time of collection in 39.8% of specimens and could be approximated for nearly all specimens. Label data revealed the great age of this collection (average age 91.4 years) and the peak period of specimen acquisition between 1880 and 1930, with little differences among continents. Specimen acquisition declined greatly after about 1950. Early detected species generally were present in numerous specimens but were missing records from recent decades, while more recently acquired species (after 1950) were represented mostly by singleton specimens only. The slowing collection growth was mirrored by the decreasing rate of species description, which was affected by huge time lags of several decades to formal description after the initial specimen acquisition.DiscussionHistoric label information provides a unique resource for assessing the state of biodiversity backwards to pre-industrial times. Many species held in historical collections especially from tropical super-diverse areas may not be discovered ever again, and if they do, their recognition requires access to digital resources and more complete levels of species description. A final challenge is to link the historical specimens to contemporary collections that are mostly conducted with mechanical trapping of specimens and DNA-based species recognition.
{"title":"Frontiers | The taxonomic and chronological composition of a museum collection of Coleoptera revealed through large-scale digitisation","authors":"Beulah Garner, Louise Allan, Robyn Crowther, Lizzy Devenish, Phaedra Kokkini, Laurence Livermore, Nicola Lowndes, Krisztina Lohonya, Ben Price, Peter Wing, Alfried P. Vogler","doi":"10.3389/fevo.2024.1305931","DOIUrl":"https://doi.org/10.3389/fevo.2024.1305931","url":null,"abstract":"IntroductionHistoric museum collections hold a wealth of biodiversity data that are essential to our understanding of the rapidly changing natural world. Novel curatorial practices are needed to extract and digitise these data, especially for the innumerable pinned insects whose collecting information is held on small labels.MethodsWe piloted semi-automated specimen imaging and digitisation of specimen labels for a collection of ~29,000 pinned insects of ground beetles (Carabidae: Lebiinae) held at the Natural History Museum, London. Raw transcription data were curated against literature sources and non-digital collection records. The primary data were subjected to statistical analyses to infer trends in collection activities and descriptive taxonomy over the past two centuries.ResultsThis work produced research-ready digitised records for 2,546 species (40% of known species of Lebiinae). Label information was available on geography in 91% of identified specimens, and the time of collection in 39.8% of specimens and could be approximated for nearly all specimens. Label data revealed the great age of this collection (average age 91.4 years) and the peak period of specimen acquisition between 1880 and 1930, with little differences among continents. Specimen acquisition declined greatly after about 1950. Early detected species generally were present in numerous specimens but were missing records from recent decades, while more recently acquired species (after 1950) were represented mostly by singleton specimens only. The slowing collection growth was mirrored by the decreasing rate of species description, which was affected by huge time lags of several decades to formal description after the initial specimen acquisition.DiscussionHistoric label information provides a unique resource for assessing the state of biodiversity backwards to pre-industrial times. Many species held in historical collections especially from tropical super-diverse areas may not be discovered ever again, and if they do, their recognition requires access to digital resources and more complete levels of species description. A final challenge is to link the historical specimens to contemporary collections that are mostly conducted with mechanical trapping of specimens and DNA-based species recognition.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":"21 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141720220","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-14DOI: 10.3389/fevo.2024.1378931
Fabienne Marret, Anne de Vernal
Over the last four decades, organic-walled dinoflagellate cysts have shown high potential as tracers of past sea-surface conditions during the Quaternary. These microfossils relate to the pelagic productivity of both phototrophic and heterotrophic protist organisms and are recovered in high numbers in almost all marine environment settings from the nearshore and estuarine systems to the distal continental margin. In polar environments, where other conventional proxies are rare or absent, dinoflagellate cysts showed a relatively high diversity of species and a close relationship with sea-ice cover duration, winter and summer temperature, and salinity, enabling quantitative reconstructions of several oceanic variables over time. From the temperate to the tropical latitudes of the Atlantic Ocean, their modern distribution highlights a response to primary productivity and seasonal contrasts in surface temperature. They also have proven that they could be used as tracers of eutrophication in stratified systems and can also highlight human impact on their distribution. In this paper, we present an overview of dinoflagellate cysts as ecological tracers in recent and past sediments of the Atlantic Ocean, from the Arctic to the Antarctic. We provide examples of their use as proxies in paleoclimatic-palaeoceanographic studies at glacial to interglacial time scales, with emphasis on the last ice age to recent (last 25 kyr), the northern North Atlantic and western-eastern tropic North Atlantic. We also discuss their potential as tracers of anthropogenic stress in coastal environments.
{"title":"Dinoflagellate cysts as proxies of environmental, ocean and climate changes in the Atlantic realm during the quaternary","authors":"Fabienne Marret, Anne de Vernal","doi":"10.3389/fevo.2024.1378931","DOIUrl":"https://doi.org/10.3389/fevo.2024.1378931","url":null,"abstract":"Over the last four decades, organic-walled dinoflagellate cysts have shown high potential as tracers of past sea-surface conditions during the Quaternary. These microfossils relate to the pelagic productivity of both phototrophic and heterotrophic protist organisms and are recovered in high numbers in almost all marine environment settings from the nearshore and estuarine systems to the distal continental margin. In polar environments, where other conventional proxies are rare or absent, dinoflagellate cysts showed a relatively high diversity of species and a close relationship with sea-ice cover duration, winter and summer temperature, and salinity, enabling quantitative reconstructions of several oceanic variables over time. From the temperate to the tropical latitudes of the Atlantic Ocean, their modern distribution highlights a response to primary productivity and seasonal contrasts in surface temperature. They also have proven that they could be used as tracers of eutrophication in stratified systems and can also highlight human impact on their distribution. In this paper, we present an overview of dinoflagellate cysts as ecological tracers in recent and past sediments of the Atlantic Ocean, from the Arctic to the Antarctic. We provide examples of their use as proxies in paleoclimatic-palaeoceanographic studies at glacial to interglacial time scales, with emphasis on the last ice age to recent (last 25 kyr), the northern North Atlantic and western-eastern tropic North Atlantic. We also discuss their potential as tracers of anthropogenic stress in coastal environments.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":"22 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141257863","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-14DOI: 10.3389/fevo.2024.1403602
Michael D. Ulyshen, Kevin Robertson, Scott Horn, Cinnamon Dixon
Although the fire-maintained pine savannas of the southeastern U.S. Coastal Plain are recognized for their plant diversity, pollinators associated with these ecosystems remain comparatively understudied. Here we present the results from a season-long effort to record bee-flower interactions at a single site in Florida. We collected 93 bee species (out of an estimated 117) from 79 flower species, with a total of 446 unique interactions. Bee richness and the number of interactions exhibited a bimodal pattern, dipping in mid-summer before an estimated peak in October. The most important floral resources changed throughout the season as did the composition of bees, with the spring and fall periods being particularly distinct. We found that pollen specialists (that collect pollen from a single family of plants) and pollen generalists accounted for a similar proportion of bee species over the entire season. However, pollen generalists outnumbered pollen specialists in the spring and summer before reversing in the fall. Pollen specialists visited significantly fewer plant species and families than pollen generalists and many were collected exclusively from their host family. This was particularly the case for aster specialists active only during the fall. We estimate that between 18.3-25.8% of the local bee fauna depends directly on the overstory trees for nesting habitat including dead wood and resin. Two management recommendations can be made based on these results. First, because fall is the period of peak floral abundance and bee richness, including many late-season aster specialists, it is probably the least favorable time for prescribed fire. Second, considering that a significant proportion of native bees depend on dead wood for nesting, it is important to retain standing dead trees and fallen wood whenever possible.
{"title":"Characterization of the bee community and pollination network in a southeastern U.S. pine savanna","authors":"Michael D. Ulyshen, Kevin Robertson, Scott Horn, Cinnamon Dixon","doi":"10.3389/fevo.2024.1403602","DOIUrl":"https://doi.org/10.3389/fevo.2024.1403602","url":null,"abstract":"Although the fire-maintained pine savannas of the southeastern U.S. Coastal Plain are recognized for their plant diversity, pollinators associated with these ecosystems remain comparatively understudied. Here we present the results from a season-long effort to record bee-flower interactions at a single site in Florida. We collected 93 bee species (out of an estimated 117) from 79 flower species, with a total of 446 unique interactions. Bee richness and the number of interactions exhibited a bimodal pattern, dipping in mid-summer before an estimated peak in October. The most important floral resources changed throughout the season as did the composition of bees, with the spring and fall periods being particularly distinct. We found that pollen specialists (that collect pollen from a single family of plants) and pollen generalists accounted for a similar proportion of bee species over the entire season. However, pollen generalists outnumbered pollen specialists in the spring and summer before reversing in the fall. Pollen specialists visited significantly fewer plant species and families than pollen generalists and many were collected exclusively from their host family. This was particularly the case for aster specialists active only during the fall. We estimate that between 18.3-25.8% of the local bee fauna depends directly on the overstory trees for nesting habitat including dead wood and resin. Two management recommendations can be made based on these results. First, because fall is the period of peak floral abundance and bee richness, including many late-season aster specialists, it is probably the least favorable time for prescribed fire. Second, considering that a significant proportion of native bees depend on dead wood for nesting, it is important to retain standing dead trees and fallen wood whenever possible.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":"204 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140931626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-13DOI: 10.3389/fevo.2024.1292132
Priscila Amaral de Sá, Jochen Schöngart, Florian Wittmann, Maria Teresa Fernandez Piedade, Mario Tomazello-Filho, Rafael S. Oliveira, Viviana Horna, Pia Parolin, Flavia Machado Durgante
IntroductionTrees from flooded forests have to adjust their xylem hydraulic structure to face the annual flooding and the climatic conditions of the atmosphere. Usually, this adjustment of anatomical tissues in the tropics is driven by drought events inducing conservative behavior and can be recorded annually in tree rings. However, how the flood pulse and the climatic conditions influence the xylem hydraulic structure in floodplain trees is unknown.MethodsTo fill this gap, we explore if flooded periods and monthly climate variation affect the annual tree growth and xylem anatomy structure for the tree species Hydrochorea corymbosa (Fabaceae) from the várzea flooded forest in the Central Amazon. We developed a 41-year ring width chronology (1971–2018) and a 30-year time series of xylem anatomy parameters (1988–2018) as mean hydraulic vessel diameter (Dh), vessel frequency (VF), and parenchyma quantity (PQ). We correlated the series with monthly hydrological and climatic data.ResultsThe hydrological regime did not correlate with annual tree growth in that species as we previously expected but showed correlations with the xylem anatomical structure. High flood levels during the end of the flooding period induced conservative patterns of the anatomical structure, with a negative correlation with Dh (rho June = −0.40, p < 0.05) and a positive correlation with the PQ (rho September/October = 0.42, p < 0.05). These responses show that these trees are responding to flooding similar to the tree responses to drought. Regarding the climatic variation, the annual tree growth showed a negative correlation with the vapor pressure deficit (VPD), after the second half of the flooded period with the strongest correlation happening during the non-flooded period (rho December = −0.66, p < 0. 01). These conservative patterns in tree behavior also happened when the maximum temperature negatively affected the vessel diameter (rho September = −0.42, p < 0.05).DiscussionIn that case, we recognized two different moments that the environment is inducing conservative patterns in the xylem structure of those trees: 1) increasing the flood levels and 2) the high evaporative demand during the non-flooded period. In this way, the intensification of the hydrological regime, as well as the strong drought conditions during the non-flooded periods, can be a risk for H. corymbosa in the Central Amazonian floodplains.
{"title":"Hydrological and climate intensification induces conservative behavior in the Hydrochorea corymbosa xylem production in a Central Amazon floodplain forest","authors":"Priscila Amaral de Sá, Jochen Schöngart, Florian Wittmann, Maria Teresa Fernandez Piedade, Mario Tomazello-Filho, Rafael S. Oliveira, Viviana Horna, Pia Parolin, Flavia Machado Durgante","doi":"10.3389/fevo.2024.1292132","DOIUrl":"https://doi.org/10.3389/fevo.2024.1292132","url":null,"abstract":"IntroductionTrees from flooded forests have to adjust their xylem hydraulic structure to face the annual flooding and the climatic conditions of the atmosphere. Usually, this adjustment of anatomical tissues in the tropics is driven by drought events inducing conservative behavior and can be recorded annually in tree rings. However, how the flood pulse and the climatic conditions influence the xylem hydraulic structure in floodplain trees is unknown.MethodsTo fill this gap, we explore if flooded periods and monthly climate variation affect the annual tree growth and xylem anatomy structure for the tree species Hydrochorea corymbosa (Fabaceae) from the várzea flooded forest in the Central Amazon. We developed a 41-year ring width chronology (1971–2018) and a 30-year time series of xylem anatomy parameters (1988–2018) as mean hydraulic vessel diameter (Dh), vessel frequency (VF), and parenchyma quantity (PQ). We correlated the series with monthly hydrological and climatic data.ResultsThe hydrological regime did not correlate with annual tree growth in that species as we previously expected but showed correlations with the xylem anatomical structure. High flood levels during the end of the flooding period induced conservative patterns of the anatomical structure, with a negative correlation with Dh (rho June = −0.40, p < 0.05) and a positive correlation with the PQ (rho September/October = 0.42, p < 0.05). These responses show that these trees are responding to flooding similar to the tree responses to drought. Regarding the climatic variation, the annual tree growth showed a negative correlation with the vapor pressure deficit (VPD), after the second half of the flooded period with the strongest correlation happening during the non-flooded period (rho December = −0.66, p < 0. 01). These conservative patterns in tree behavior also happened when the maximum temperature negatively affected the vessel diameter (rho September = −0.42, p < 0.05).DiscussionIn that case, we recognized two different moments that the environment is inducing conservative patterns in the xylem structure of those trees: 1) increasing the flood levels and 2) the high evaporative demand during the non-flooded period. In this way, the intensification of the hydrological regime, as well as the strong drought conditions during the non-flooded periods, can be a risk for H. corymbosa in the Central Amazonian floodplains.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":"26 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141257927","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-13DOI: 10.3389/fevo.2024.1328569
Shuwei Wei, Bao Qi, Xiaozhuo Zhang, Zhanwu Peng, Yu Li, Qi Wang
Lyophyllum consists of rare edible and medicinal mushrooms. Considering this group’s economic and ecological significance, understanding its biodiversity could be strategically important. Our analysis involved an extensive examination of publicly available ITS sequences from NCBI-GenBank and fungal amplicon sequencing data obtained from NCBI-SRA. At a 98% sequence similarity level, we deliminated 88 Lyophyllum OTUs, 49 of which were not categorized as ‘known species’. The diversity of Lyophyllum is predominantly concentrated in the Northern Hemisphere and tends to display endemic distribution, and Europe is particularly notable for its high diversity of Lyophyllum. Given the escalating volume of data produced by amplicon sequencing, employing the amplicon dataset can facilitate an accurate survey of species diversity in Lyophyllum taxonomy. By using data from amplicon datasets, the fieldwork time and research funding for taxonomists can be saved, thereby significantly advancing the progress of the entire field of biodiversity research.
{"title":"Global diversity and biogeography of Lyophyllum inferred from amplicon datasets","authors":"Shuwei Wei, Bao Qi, Xiaozhuo Zhang, Zhanwu Peng, Yu Li, Qi Wang","doi":"10.3389/fevo.2024.1328569","DOIUrl":"https://doi.org/10.3389/fevo.2024.1328569","url":null,"abstract":"Lyophyllum consists of rare edible and medicinal mushrooms. Considering this group’s economic and ecological significance, understanding its biodiversity could be strategically important. Our analysis involved an extensive examination of publicly available ITS sequences from NCBI-GenBank and fungal amplicon sequencing data obtained from NCBI-SRA. At a 98% sequence similarity level, we deliminated 88 Lyophyllum OTUs, 49 of which were not categorized as ‘known species’. The diversity of Lyophyllum is predominantly concentrated in the Northern Hemisphere and tends to display endemic distribution, and Europe is particularly notable for its high diversity of Lyophyllum. Given the escalating volume of data produced by amplicon sequencing, employing the amplicon dataset can facilitate an accurate survey of species diversity in Lyophyllum taxonomy. By using data from amplicon datasets, the fieldwork time and research funding for taxonomists can be saved, thereby significantly advancing the progress of the entire field of biodiversity research.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":"14 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141505818","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-13DOI: 10.3389/fevo.2024.1347837
Stein Joar Hegland, Mark A. K. Gillespie
Climate change impacts on species and ecosystem functioning may depend on climatic context and study systems. Climate warming and intensified herbivory are two stressors to plants that often appear in combination and are predicted to increase in cold environments. Effects of multiple drivers on plant performance are difficult to predict and warrant studies that use experimental manipulations along climatic gradients to produce more realistic knowledge. Our three study sites by the Sognefjord in Norway, that differed mainly in climatic conditions (ca. 5°C growing season difference), ranged from hemi-boreal lowland (100 masl, Low), via boreal mid-montane (500 masl) to alpine timberline (900 masl, High) bioclimates. At each site, in a randomized block design, we simulated growing-season warming using open-top chambers (OTCs) and experimentally induced herbivory resistance using the plant hormone methyl jasmonate (MeJA). We recorded growth, mortality, flower and fruit numbers, and insect herbivory on tagged ramets in permanent plots across three years (2016-2018) in three open woodland populations of two functionally important plant species with contrasting traits, Vaccinium myrtillus (bilberry) and V. vitis-idaea (lingonberry). Growth of both dwarf shrubs decreased with warming in the warm lowland populations (Low) but increased in the alpine populations (High). Shoot mortality increased most with warming at Low but was reduced at High. Reproduction, both flowering and fruiting, decreased with induced resistance treatment, but the effect was larger when warmed for bilberry and increased with elevation for both species. Leaf herbivory in bilberry increased with warming at Low but decreased at High. The combined warming and resistance treatment had only synergistic negative interaction effects on fruit numbers in bilberry. The clear context- and species-dependent effects of climate warming and increased resistance in this study may predict a potential decline in performance, as well as abundance and distribution, of these functionally important Vaccinium species at our lowest site. Bilberry reproduction appeared to be particularly susceptible to both climate warming and induced resistance in the manipulated populations. Such combined negative effects on plant performance are likely to have considerable knock-on effects via altered species’ interactions and ecosystem functioning.
{"title":"Vaccinium dwarf shrubs responses to experimental warming and herbivory resistance treatment are species- and context dependent","authors":"Stein Joar Hegland, Mark A. K. Gillespie","doi":"10.3389/fevo.2024.1347837","DOIUrl":"https://doi.org/10.3389/fevo.2024.1347837","url":null,"abstract":"Climate change impacts on species and ecosystem functioning may depend on climatic context and study systems. Climate warming and intensified herbivory are two stressors to plants that often appear in combination and are predicted to increase in cold environments. Effects of multiple drivers on plant performance are difficult to predict and warrant studies that use experimental manipulations along climatic gradients to produce more realistic knowledge. Our three study sites by the Sognefjord in Norway, that differed mainly in climatic conditions (ca. 5°C growing season difference), ranged from hemi-boreal lowland (100 masl, Low), via boreal mid-montane (500 masl) to alpine timberline (900 masl, High) bioclimates. At each site, in a randomized block design, we simulated growing-season warming using open-top chambers (OTCs) and experimentally induced herbivory resistance using the plant hormone methyl jasmonate (MeJA). We recorded growth, mortality, flower and fruit numbers, and insect herbivory on tagged ramets in permanent plots across three years (2016-2018) in three open woodland populations of two functionally important plant species with contrasting traits, <jats:italic>Vaccinium myrtillus</jats:italic> (bilberry) and <jats:italic>V. vitis-idaea</jats:italic> (lingonberry). Growth of both dwarf shrubs decreased with warming in the warm lowland populations (Low) but increased in the alpine populations (High). Shoot mortality increased most with warming at Low but was reduced at High. Reproduction, both flowering and fruiting, decreased with induced resistance treatment, but the effect was larger when warmed for bilberry and increased with elevation for both species. Leaf herbivory in bilberry increased with warming at Low but decreased at High. The combined warming and resistance treatment had only synergistic negative interaction effects on fruit numbers in bilberry. The clear context- and species-dependent effects of climate warming and increased resistance in this study may predict a potential decline in performance, as well as abundance and distribution, of these functionally important <jats:italic>Vaccinium</jats:italic> species at our lowest site. Bilberry reproduction appeared to be particularly susceptible to both climate warming and induced resistance in the manipulated populations. Such combined negative effects on plant performance are likely to have considerable knock-on effects via altered species’ interactions and ecosystem functioning.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":"61 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140931413","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-13DOI: 10.3389/fevo.2024.1389382
Michael Wolf-Vollenbröker, Stefanie Petow, Max Schmidbauer, Mareike Fellmin, Reiner Ulrich, Julia Mehlhorn
IntroductionCrested chickens show abnormalities in their anatomy of the skull, endocranium, and brain (including cerebral elongation) and can be appropriate model systems for neuroanatomical evolution, brain–skull integration, and skull and brain deformities. Here, we give a detailed comprehensive description of the skull of crested chickens using the example of the Padovana chicken, including ontogenetic aspects and an allometric analysis of their brain size.MethodsIn total, 109 chickens of two different strains of the Padovana chicken were hatched together. All animals were X-rayed weekly during growth. Nine juvenile (ready for hatch) and 22 adult skulls were processed for histology and morphological descriptions, and a further 20 individuals were processed for brain analysis.ResultsAt hatching, all chicks were already crested, and a distinctive bony protuberance was first observed at the age of 4 weeks. Juvenile chickens exhibit either an open neurocranium or a protuberance. In the adult skull, foramina of different sizes can be found in the frontal bone, but no completely open neurocrania are observed in juveniles. Particularly in Padovana with cranial protuberances, several peculiarities can be observed in the os mesethmoidale, os nasale, os praemaxillare, orbit, and cranial fossae. Additionally, the brain of Padovana with cranial protuberances looks drawn in length with the shape of an hourglass and showed significantly larger encephalization indices than plain-headed breeds, topped only by another crested chicken breed.DiscussionInvestigations on chickens with cerebral elongation may facilitate the understanding of skull and brain dysplasia and may provide meaningful insights into cerebral hernia development. Additionally, crested breeds, combined with standard chickens, form a promising comparative system for investigating the emergence of novel brain and skull morphologies.
{"title":"Detailed analysis of skull morphology and brain size in crested Padovana chicken (Gallus gallus f.d.)","authors":"Michael Wolf-Vollenbröker, Stefanie Petow, Max Schmidbauer, Mareike Fellmin, Reiner Ulrich, Julia Mehlhorn","doi":"10.3389/fevo.2024.1389382","DOIUrl":"https://doi.org/10.3389/fevo.2024.1389382","url":null,"abstract":"IntroductionCrested chickens show abnormalities in their anatomy of the skull, endocranium, and brain (including cerebral elongation) and can be appropriate model systems for neuroanatomical evolution, brain–skull integration, and skull and brain deformities. Here, we give a detailed comprehensive description of the skull of crested chickens using the example of the Padovana chicken, including ontogenetic aspects and an allometric analysis of their brain size.MethodsIn total, 109 chickens of two different strains of the Padovana chicken were hatched together. All animals were X-rayed weekly during growth. Nine juvenile (ready for hatch) and 22 adult skulls were processed for histology and morphological descriptions, and a further 20 individuals were processed for brain analysis.ResultsAt hatching, all chicks were already crested, and a distinctive bony protuberance was first observed at the age of 4 weeks. Juvenile chickens exhibit either an open neurocranium or a protuberance. In the adult skull, foramina of different sizes can be found in the frontal bone, but no completely open neurocrania are observed in juveniles. Particularly in Padovana with cranial protuberances, several peculiarities can be observed in the os mesethmoidale, os nasale, os praemaxillare, orbit, and cranial fossae. Additionally, the brain of Padovana with cranial protuberances looks drawn in length with the shape of an hourglass and showed significantly larger encephalization indices than plain-headed breeds, topped only by another crested chicken breed.DiscussionInvestigations on chickens with cerebral elongation may facilitate the understanding of skull and brain dysplasia and may provide meaningful insights into cerebral hernia development. Additionally, crested breeds, combined with standard chickens, form a promising comparative system for investigating the emergence of novel brain and skull morphologies.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":"129 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140931539","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-13DOI: 10.3389/fevo.2024.1389619
Miriam Edelkind-Vealey, Michael D. Ulyshen, S. Kristine Braman
IntroductionUrban forests provide necessary habitat for many forest-associated bee species amidst development and fragmentation. These forest fragments provide a variety of important floral and non-floral resources for bees that encompass a diversity of functional guilds characterized by size, diet breadth, nesting, sociality, origin, and seasonality. The relative importance of forest edge vs. interior habitats to these organisms is not well understood.MethodsHere, we compare bee communities between forest edge and interior locations at eight locations in Athens, GA, USA. We also explore the effects of stand structure, tree composition, ground cover type, and the presence of snags and downed wood on these organisms.ResultsWe found bee abundance and richness to be higher at the forest edge than interior with distinct community compositions at both locations. Canopy cover, invasive shrub cover, ground cover, and tree diversity influenced the observed community composition. We also determined that the most impactful functional traits influencing bee community structure in urban forest fragments were nesting substrate, origin (native or exotic to North America), sociality, and diet breadth.DiscussionOur findings will help establish the effects of local forest characteristics on the community composition, diversity, and abundance of wild bees and further our knowledge of the conservation value of urban forests for preserving wild bee communities.
{"title":"Local factors influence the wild bee functional community at the urban-forest interface","authors":"Miriam Edelkind-Vealey, Michael D. Ulyshen, S. Kristine Braman","doi":"10.3389/fevo.2024.1389619","DOIUrl":"https://doi.org/10.3389/fevo.2024.1389619","url":null,"abstract":"IntroductionUrban forests provide necessary habitat for many forest-associated bee species amidst development and fragmentation. These forest fragments provide a variety of important floral and non-floral resources for bees that encompass a diversity of functional guilds characterized by size, diet breadth, nesting, sociality, origin, and seasonality. The relative importance of forest edge vs. interior habitats to these organisms is not well understood.MethodsHere, we compare bee communities between forest edge and interior locations at eight locations in Athens, GA, USA. We also explore the effects of stand structure, tree composition, ground cover type, and the presence of snags and downed wood on these organisms.ResultsWe found bee abundance and richness to be higher at the forest edge than interior with distinct community compositions at both locations. Canopy cover, invasive shrub cover, ground cover, and tree diversity influenced the observed community composition. We also determined that the most impactful functional traits influencing bee community structure in urban forest fragments were nesting substrate, origin (native or exotic to North America), sociality, and diet breadth.DiscussionOur findings will help establish the effects of local forest characteristics on the community composition, diversity, and abundance of wild bees and further our knowledge of the conservation value of urban forests for preserving wild bee communities.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":"204 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140931457","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}