Pub Date : 2024-05-30DOI: 10.3389/fevo.2024.1360714
Natalia Mannise, Mariana Cosse, Gonzalo Greif, Nadia Bou, Carlos Robello, Susana González, Andres Iriarte
Pampas and crab-eating foxes are medium-sized canids living in sympatry in the middle east of South America. Studies on the diet composition of these species provide a deep understanding of their ecological roles in the ecosystem structure and regulation. Using the metabarcoding technique, we analyzed the diet of both fox species in order to identify the vertebrate taxa included as food items. A fragment of the 12S ribosomal gene of the mtDNA was amplified using DNA extracted from 27 scat samples collected in south-central Uruguay during cold (June 2015) and warm (January – April 2016) seasons. A fox DNA blocking primer was designed to minimize the host amplicon products, and pooled samples were sequenced through paired-end reads (100 bp library) on a MiSeq Illumina Platform. The generated sequences were compared to a reference database built with sequences available in GenBank. In concordance with previous studies using traditional methods, we found that the most common food taxon were rodents. Qualitative differences in diet composition between both fox species were identified. Armadillo species were only found in pampas fox diet, while a greater variety of amphibians and birds were detected in crab-eating fox feces. Additionally, an innovative approach to differentiate between real and artifact sequences was employed. This method was based on comparing mutations at conserved and non-conserved positions within the secondary structure of the 12S rRNA, combined with network sequence reconstruction. Our results demonstrate the efficacy of the methodology in detecting the food species present in both fox diets, enabling the evaluation of intraspecific diversity among these species and facilitating the discarding of sequencing errors. This makes the methodology applicable to a wide range of studies.
潘帕斯狐和食蟹狐是生活在南美洲中东部的中型犬科动物。对这两种狐狸食物组成的研究有助于深入了解它们在生态系统结构和调节中的作用。我们利用代谢编码技术分析了两种狐狸的食物，以确定作为食物的脊椎动物类群。我们使用从乌拉圭中南部寒冷季节（2015年6月）和温暖季节（2016年1月至4月）采集的27份粪便样本中提取的DNA，扩增了mtDNA的12S核糖体基因片段。设计了一种狐狸 DNA 阻断引物，以尽量减少宿主扩增产物，并在 MiSeq Illumina 平台上通过成对末端读数（100 bp 文库）对汇集的样本进行测序。生成的序列与根据 GenBank 中的序列建立的参考数据库进行了比较。与之前使用传统方法进行的研究一致，我们发现最常见的食物分类群是啮齿类动物。我们发现两种狐狸的食物组成存在质的差异。在潘帕斯狐的食物中只发现了犰狳类，而在食蟹狐的粪便中发现了更多种类的两栖动物和鸟类。此外，还采用了一种创新方法来区分真实序列和伪造序列。该方法基于比较 12S rRNA 二级结构中保守和非保守位置的突变，并结合网络序列重建。我们的研究结果表明，该方法能有效地检测出两种狐狸食物中的食物种类，从而评估这些种类的种内多样性，并有助于剔除测序错误。这使得该方法适用于广泛的研究。
{"title":"Developing a DNA metabarcoding method to identify diet taxa in Neotropical foxes","authors":"Natalia Mannise, Mariana Cosse, Gonzalo Greif, Nadia Bou, Carlos Robello, Susana González, Andres Iriarte","doi":"10.3389/fevo.2024.1360714","DOIUrl":"https://doi.org/10.3389/fevo.2024.1360714","url":null,"abstract":"Pampas and crab-eating foxes are medium-sized canids living in sympatry in the middle east of South America. Studies on the diet composition of these species provide a deep understanding of their ecological roles in the ecosystem structure and regulation. Using the metabarcoding technique, we analyzed the diet of both fox species in order to identify the vertebrate taxa included as food items. A fragment of the 12S ribosomal gene of the mtDNA was amplified using DNA extracted from 27 scat samples collected in south-central Uruguay during cold (June 2015) and warm (January – April 2016) seasons. A fox DNA blocking primer was designed to minimize the host amplicon products, and pooled samples were sequenced through paired-end reads (100 bp library) on a MiSeq Illumina Platform. The generated sequences were compared to a reference database built with sequences available in GenBank. In concordance with previous studies using traditional methods, we found that the most common food taxon were rodents. Qualitative differences in diet composition between both fox species were identified. Armadillo species were only found in pampas fox diet, while a greater variety of amphibians and birds were detected in crab-eating fox feces. Additionally, an innovative approach to differentiate between real and artifact sequences was employed. This method was based on comparing mutations at conserved and non-conserved positions within the secondary structure of the 12S rRNA, combined with network sequence reconstruction. Our results demonstrate the efficacy of the methodology in detecting the food species present in both fox diets, enabling the evaluation of intraspecific diversity among these species and facilitating the discarding of sequencing errors. This makes the methodology applicable to a wide range of studies.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141192322","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-28DOI: 10.3389/fevo.2024.1305931
Beulah Garner, Louise Allan, Robyn Crowther, Lizzy Devenish, Phaedra Kokkini, Laurence Livermore, Nicola Lowndes, Krisztina Lohonya, Ben Price, Peter Wing, Alfried P. Vogler
IntroductionHistoric museum collections hold a wealth of biodiversity data that are essential to our understanding of the rapidly changing natural world. Novel curatorial practices are needed to extract and digitise these data, especially for the innumerable pinned insects whose collecting information is held on small labels.MethodsWe piloted semi-automated specimen imaging and digitisation of specimen labels for a collection of ~29,000 pinned insects of ground beetles (Carabidae: Lebiinae) held at the Natural History Museum, London. Raw transcription data were curated against literature sources and non-digital collection records. The primary data were subjected to statistical analyses to infer trends in collection activities and descriptive taxonomy over the past two centuries.ResultsThis work produced research-ready digitised records for 2,546 species (40% of known species of Lebiinae). Label information was available on geography in 91% of identified specimens, and the time of collection in 39.8% of specimens and could be approximated for nearly all specimens. Label data revealed the great age of this collection (average age 91.4 years) and the peak period of specimen acquisition between 1880 and 1930, with little differences among continents. Specimen acquisition declined greatly after about 1950. Early detected species generally were present in numerous specimens but were missing records from recent decades, while more recently acquired species (after 1950) were represented mostly by singleton specimens only. The slowing collection growth was mirrored by the decreasing rate of species description, which was affected by huge time lags of several decades to formal description after the initial specimen acquisition.DiscussionHistoric label information provides a unique resource for assessing the state of biodiversity backwards to pre-industrial times. Many species held in historical collections especially from tropical super-diverse areas may not be discovered ever again, and if they do, their recognition requires access to digital resources and more complete levels of species description. A final challenge is to link the historical specimens to contemporary collections that are mostly conducted with mechanical trapping of specimens and DNA-based species recognition.
{"title":"Frontiers | The taxonomic and chronological composition of a museum collection of Coleoptera revealed through large-scale digitisation","authors":"Beulah Garner, Louise Allan, Robyn Crowther, Lizzy Devenish, Phaedra Kokkini, Laurence Livermore, Nicola Lowndes, Krisztina Lohonya, Ben Price, Peter Wing, Alfried P. Vogler","doi":"10.3389/fevo.2024.1305931","DOIUrl":"https://doi.org/10.3389/fevo.2024.1305931","url":null,"abstract":"IntroductionHistoric museum collections hold a wealth of biodiversity data that are essential to our understanding of the rapidly changing natural world. Novel curatorial practices are needed to extract and digitise these data, especially for the innumerable pinned insects whose collecting information is held on small labels.MethodsWe piloted semi-automated specimen imaging and digitisation of specimen labels for a collection of ~29,000 pinned insects of ground beetles (Carabidae: Lebiinae) held at the Natural History Museum, London. Raw transcription data were curated against literature sources and non-digital collection records. The primary data were subjected to statistical analyses to infer trends in collection activities and descriptive taxonomy over the past two centuries.ResultsThis work produced research-ready digitised records for 2,546 species (40% of known species of Lebiinae). Label information was available on geography in 91% of identified specimens, and the time of collection in 39.8% of specimens and could be approximated for nearly all specimens. Label data revealed the great age of this collection (average age 91.4 years) and the peak period of specimen acquisition between 1880 and 1930, with little differences among continents. Specimen acquisition declined greatly after about 1950. Early detected species generally were present in numerous specimens but were missing records from recent decades, while more recently acquired species (after 1950) were represented mostly by singleton specimens only. The slowing collection growth was mirrored by the decreasing rate of species description, which was affected by huge time lags of several decades to formal description after the initial specimen acquisition.DiscussionHistoric label information provides a unique resource for assessing the state of biodiversity backwards to pre-industrial times. Many species held in historical collections especially from tropical super-diverse areas may not be discovered ever again, and if they do, their recognition requires access to digital resources and more complete levels of species description. A final challenge is to link the historical specimens to contemporary collections that are mostly conducted with mechanical trapping of specimens and DNA-based species recognition.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141720220","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-24DOI: 10.3389/fevo.2024.1409174
M. Perillo, Tanya Alessandro, Alfonso Toscano, Rossella Annunziata
To explore animal diversity, new experimentally tractable organisms must be established. Echinoderms include five groups of marine animals that have been used as developmental models for over a century thanks to their low costs, high fecundity, optically clear larvae and genetic tractability. An additional advantage of echinoderms is that their larval forms display diverse morphologies. This rich diversity enables comparative studies to investigate the evolutionary relationships among cell types, tissues, and organs. However, reproducible protocols to obtain gametes, detailed information on embryogenesis, and genomic tools have been optimized only for selected species of sea urchins and sea stars. To address this gap, we established the abundant Mediterranean sea cucumber Holothuria tubulosa as a new experimental system. Here we describe a method to reliably obtain gametes and make embryonic cultures multiple times from the same animal and characterize unique larval tissues combining immunohistochemistry and high-resolution microscopy. This work represents a step forward in our understanding of holothurian development and establishes H. tubulosa as an emerging experimental system for evo-devo and other biological disciplines.
{"title":"Larval development of Holothuria tubulosa, a new tractable system for evo-devo","authors":"M. Perillo, Tanya Alessandro, Alfonso Toscano, Rossella Annunziata","doi":"10.3389/fevo.2024.1409174","DOIUrl":"https://doi.org/10.3389/fevo.2024.1409174","url":null,"abstract":"To explore animal diversity, new experimentally tractable organisms must be established. Echinoderms include five groups of marine animals that have been used as developmental models for over a century thanks to their low costs, high fecundity, optically clear larvae and genetic tractability. An additional advantage of echinoderms is that their larval forms display diverse morphologies. This rich diversity enables comparative studies to investigate the evolutionary relationships among cell types, tissues, and organs. However, reproducible protocols to obtain gametes, detailed information on embryogenesis, and genomic tools have been optimized only for selected species of sea urchins and sea stars. To address this gap, we established the abundant Mediterranean sea cucumber Holothuria tubulosa as a new experimental system. Here we describe a method to reliably obtain gametes and make embryonic cultures multiple times from the same animal and characterize unique larval tissues combining immunohistochemistry and high-resolution microscopy. This work represents a step forward in our understanding of holothurian development and establishes H. tubulosa as an emerging experimental system for evo-devo and other biological disciplines.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141102048","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-24DOI: 10.3389/fevo.2024.1330583
Laura Lukens, Jennifer Thieme, W. Thogmartin
The global decline of pollinators, particularly insects, underscores the importance of enhanced monitoring of their populations and habitats. However, monitoring some pollinator habitat is challenging due to widespread species distributions and shifts in habitat requirements through seasons and life stages. The monarch butterfly (Danaus plexippus), a migratory insect pollinator that breeds widely throughout North America, presents a unique case study for testing a sampling framework to overcome these challenges. Monarchs exhibit discrete resource needs across life stages (e.g., larval requirement for milkweed, adult requirement for floral nectar), utilizing many land use types across their extensive geographic range during breeding and migration seasons. The Integrated Monarch Monitoring Program (IMMP) uses a standardized protocol with a generalized random tessellation stratified (GRTS) sampling design to gather spatially balanced and ecologically representative information on monarch habitats within the United States. The IMMP is applicable to various land use types and habitats used by breeding monarchs and may be extended to sites outside of the GRTS design to collect data on non-random sites of interest, such as legacy or conservation sites. Additionally, the IMMP’s modular design and publicly available training allows for broad participation, including involvement from community scientists. Here, we summarize habitat metrics (milkweed and floral resources) across 1,233 sites covering much of the monarch’s breeding range. We examine variation in milkweed density and floral resource availability on probabilistic (random) and non-probabilistic (convenience) samples and among land use types (site types). Additionally, we assess resource availability within core geographies for monarch breeding and migration, specifically within the U.S. Fish and Wildlife Service’s Monarch Conservation Units (western, northern, and southern United States). Milkweed density, floral frequency, and floral richness were higher on non-random sites and in the North region. Among site types, milkweed density was highest on Rights-of-Way and Unclassified Grassland, while floral frequency was lowest on Rights-of-Way. The IMMP represents the first field-based habitat monitoring program of this scale for monarchs, yielding a robust dataset on monarchs and their habitats across their breeding range and offering a framework for surveying the habitat of insect species with diverse habitat requirements or widespread distributions.
{"title":"Milkweed and floral resource availability for monarch butterflies (Danaus plexippus) in the United States","authors":"Laura Lukens, Jennifer Thieme, W. Thogmartin","doi":"10.3389/fevo.2024.1330583","DOIUrl":"https://doi.org/10.3389/fevo.2024.1330583","url":null,"abstract":"The global decline of pollinators, particularly insects, underscores the importance of enhanced monitoring of their populations and habitats. However, monitoring some pollinator habitat is challenging due to widespread species distributions and shifts in habitat requirements through seasons and life stages. The monarch butterfly (Danaus plexippus), a migratory insect pollinator that breeds widely throughout North America, presents a unique case study for testing a sampling framework to overcome these challenges. Monarchs exhibit discrete resource needs across life stages (e.g., larval requirement for milkweed, adult requirement for floral nectar), utilizing many land use types across their extensive geographic range during breeding and migration seasons. The Integrated Monarch Monitoring Program (IMMP) uses a standardized protocol with a generalized random tessellation stratified (GRTS) sampling design to gather spatially balanced and ecologically representative information on monarch habitats within the United States. The IMMP is applicable to various land use types and habitats used by breeding monarchs and may be extended to sites outside of the GRTS design to collect data on non-random sites of interest, such as legacy or conservation sites. Additionally, the IMMP’s modular design and publicly available training allows for broad participation, including involvement from community scientists. Here, we summarize habitat metrics (milkweed and floral resources) across 1,233 sites covering much of the monarch’s breeding range. We examine variation in milkweed density and floral resource availability on probabilistic (random) and non-probabilistic (convenience) samples and among land use types (site types). Additionally, we assess resource availability within core geographies for monarch breeding and migration, specifically within the U.S. Fish and Wildlife Service’s Monarch Conservation Units (western, northern, and southern United States). Milkweed density, floral frequency, and floral richness were higher on non-random sites and in the North region. Among site types, milkweed density was highest on Rights-of-Way and Unclassified Grassland, while floral frequency was lowest on Rights-of-Way. The IMMP represents the first field-based habitat monitoring program of this scale for monarchs, yielding a robust dataset on monarchs and their habitats across their breeding range and offering a framework for surveying the habitat of insect species with diverse habitat requirements or widespread distributions.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141100494","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The ecological stoichiometric ratio of carbon, nitrogen, and phosphorus is an important index to understand the utilization and distribution of plant nutrients.To explore how leaf carbon, nitrogen, and phosphorus contents, along with the stoichiometric ratio of different life forms of plants, respond to variations in altitude and soil physical and chemical properties, leaves and soil samples were collected from different life forms of plants at different altitudes (1,100~1,700 m) within the Guozigou region of the forest. Subsequently, the contents and ratios of carbon, nitrogen, and phosphorus in the leaves, as well as the physicochemical properties of the soil, were determined.The results showed the following: (1) The three life forms of plants in the study area showed that the coefficient of variation of leaf carbon content was the smallest and the distribution was the most stable, while the coefficient of variation of carbon–nitrogen ratio was the largest. (2) Altitude had a significant effect on the carbon, nitrogen, and phosphorus contents of different life form of plants, among which the leaf nitrogen content of trees, shrubs, and herbs increased significantly with altitude (p < 0.01), the leaf phosphorus content of trees increased significantly with altitude (p < 0.01), and the leaf C:N of the three life form of plants decreased significantly with altitude (p < 0.01). The C:P of the arbor decreased significantly with altitude (p < 0.05), and the N:P of shrub and herb leaves increased significantly with altitude (p < 0.01). (3) Soil organic carbon and soil moisture content were the main environmental factors affecting the changes of carbon, nitrogen, and phosphorus in leaves of arbors, and nitrate nitrogen was the main environmental factor affecting the changes of carbon, nitrogen, and phosphorus in leaves of shrubs. Available phosphorus affected the changes of carbon, nitrogen, and phosphorus in the leaves of herbaceous plants.The results provide new insights into community-level biogeographical patterns and potential factors of leaf stoichiometry among plant life forms.
{"title":"Response of carbon, nitrogen, and phosphorus in leaves of different life forms to altitude and soil factors in Tianshan wild fruit forest","authors":"Xiande Jia, Limei Wu, Jiamin Ren, Xinyang Peng, Haiying Lv","doi":"10.3389/fevo.2024.1368185","DOIUrl":"https://doi.org/10.3389/fevo.2024.1368185","url":null,"abstract":"The ecological stoichiometric ratio of carbon, nitrogen, and phosphorus is an important index to understand the utilization and distribution of plant nutrients.To explore how leaf carbon, nitrogen, and phosphorus contents, along with the stoichiometric ratio of different life forms of plants, respond to variations in altitude and soil physical and chemical properties, leaves and soil samples were collected from different life forms of plants at different altitudes (1,100~1,700 m) within the Guozigou region of the forest. Subsequently, the contents and ratios of carbon, nitrogen, and phosphorus in the leaves, as well as the physicochemical properties of the soil, were determined.The results showed the following: (1) The three life forms of plants in the study area showed that the coefficient of variation of leaf carbon content was the smallest and the distribution was the most stable, while the coefficient of variation of carbon–nitrogen ratio was the largest. (2) Altitude had a significant effect on the carbon, nitrogen, and phosphorus contents of different life form of plants, among which the leaf nitrogen content of trees, shrubs, and herbs increased significantly with altitude (p < 0.01), the leaf phosphorus content of trees increased significantly with altitude (p < 0.01), and the leaf C:N of the three life form of plants decreased significantly with altitude (p < 0.01). The C:P of the arbor decreased significantly with altitude (p < 0.05), and the N:P of shrub and herb leaves increased significantly with altitude (p < 0.01). (3) Soil organic carbon and soil moisture content were the main environmental factors affecting the changes of carbon, nitrogen, and phosphorus in leaves of arbors, and nitrate nitrogen was the main environmental factor affecting the changes of carbon, nitrogen, and phosphorus in leaves of shrubs. Available phosphorus affected the changes of carbon, nitrogen, and phosphorus in the leaves of herbaceous plants.The results provide new insights into community-level biogeographical patterns and potential factors of leaf stoichiometry among plant life forms.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141100697","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-23DOI: 10.3389/fevo.2024.1360395
Pascal Aigbedion-Atalor, Annemarie Heiduk, Jennifer Upfold, Adam Shuttleworth, Sean Moore, Martin Hill, Candice Coombes
Intraspecific variation in sex pheromones is a driver of reproductive isolation and speciation in insects. The False Codling Moth (FCM) Thaumatotibia leucotreta (Lepidoptera: Tortricidae) is a quarantine pest endemic to sub-Saharan Africa (SSA). The currently available precision control measures for FCM use female sex pheromone components to lure males into traps. However, the existing data on the composition of the female sex pheromone, especially the isomer ratios of the main pheromone component (E/Z)-8-dodecenyl acetate, are inconsistent for populations in SSA. This inconsistency led to speculation about possible reproductive isolation between geographically separated FCM populations and the potential need for local adjustment of pheromone-based FCM control tools. This, however, requires a comparative evaluation of geographic variation in FCM sexual communication and inter-population mating compatibility. We therefore investigated genetic isolation and mating compatibility between five geographically isolated FCM populations in South Africa and analysed the ratio of (E)- and (Z)-8-dodecenyl acetate in females from these populations. The five studied populations were found to form three genetically distinct groups with high genetic distances between each other. Mating compatibility tests showed that mating is possible across these groups, however, males preferred females of their own population when given choices; without a choice, males successfully mated with and transferred spermatophores to females from all other populations. The ratio of (E)- and (Z)-8-dodecenyl acetate was similar (c. 4:1) across the populations, indicating that this main female pheromone component does not cause the observed intra-population mating preferences. It remains to be investigated if qualitative/quantitative variation in other sex pheromone components influences intra-population recognition in South African FCM, providing a base for the development of regionally-specific lures for area-wide control programmes.
{"title":"Geographic variation in genetic composition, sexual communication and mating compatibility of the False Codling Moth, Thaumatotibia leucotreta for optimisation of area-wide control","authors":"Pascal Aigbedion-Atalor, Annemarie Heiduk, Jennifer Upfold, Adam Shuttleworth, Sean Moore, Martin Hill, Candice Coombes","doi":"10.3389/fevo.2024.1360395","DOIUrl":"https://doi.org/10.3389/fevo.2024.1360395","url":null,"abstract":"Intraspecific variation in sex pheromones is a driver of reproductive isolation and speciation in insects. The False Codling Moth (FCM) Thaumatotibia leucotreta (Lepidoptera: Tortricidae) is a quarantine pest endemic to sub-Saharan Africa (SSA). The currently available precision control measures for FCM use female sex pheromone components to lure males into traps. However, the existing data on the composition of the female sex pheromone, especially the isomer ratios of the main pheromone component (E/Z)-8-dodecenyl acetate, are inconsistent for populations in SSA. This inconsistency led to speculation about possible reproductive isolation between geographically separated FCM populations and the potential need for local adjustment of pheromone-based FCM control tools. This, however, requires a comparative evaluation of geographic variation in FCM sexual communication and inter-population mating compatibility. We therefore investigated genetic isolation and mating compatibility between five geographically isolated FCM populations in South Africa and analysed the ratio of (E)- and (Z)-8-dodecenyl acetate in females from these populations. The five studied populations were found to form three genetically distinct groups with high genetic distances between each other. Mating compatibility tests showed that mating is possible across these groups, however, males preferred females of their own population when given choices; without a choice, males successfully mated with and transferred spermatophores to females from all other populations. The ratio of (E)- and (Z)-8-dodecenyl acetate was similar (c. 4:1) across the populations, indicating that this main female pheromone component does not cause the observed intra-population mating preferences. It remains to be investigated if qualitative/quantitative variation in other sex pheromone components influences intra-population recognition in South African FCM, providing a base for the development of regionally-specific lures for area-wide control programmes.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141104214","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-22DOI: 10.3389/fevo.2024.1390625
S. Mendiola, Jason Z. Chen, Ben Lukubye, D. Civitello, Nic M Vega, Nicole M. Gerardo
Many insects selectively associate with specific microbes in long-term, symbiotic relationships. Maintaining these associations can be vital for the insect hosts’ development, but insects must also contend with potential coinfections from other microbes in the environment. Fending off microbial threats while maintaining mutualistic microbes has resulted in many insects developing specialized symbiotic organs to house beneficial microbes. Though locally concentrated in these organs, symbiont establishment can have global consequences for the insect, including influence over the success of coinfecting microbes in colonizing the insect host. We use a transcriptomic approach to examine how the mutualistic symbiosis between the agricultural pest Anasa tristis and bacteria in the genus Caballeronia affects insect gene expression locally within the symbiotic organs and in the insect host at large. We simultaneously determine whether Caballeronia colonization impacts insect host responses to infection with the plant pathogen Serratia marcescens, which it vectors to plants. We found that no significant differential gene expression was elicited by infection with S. marcescens. This was a surprising finding given previous work indicating that symbiotic A. tristis clear S. marcescens infection rapidly compared to aposymbiotic individuals. Our results indicate that symbiotic and nonsymbiotic tissues in A. tristis differ greatly in their gene expression, particularly following successful symbiont colonization. We found evidence for local downregulation of host immunity and upregulation of cell communication within the symbiotic organs, functions which can facilitate the success of the A. tristis-Caballeronia symbiosis.
许多昆虫会选择性地与特定微生物建立长期共生关系。维持这种关系对昆虫宿主的发展至关重要，但昆虫也必须应对环境中其他微生物可能带来的并发感染。在抵御微生物威胁的同时，许多昆虫发展出专门的共生器官来容纳有益微生物。共生体的建立虽然集中在这些器官的局部，但会对昆虫产生全球性影响，包括影响共感染微生物在昆虫宿主体内定殖的成功率。我们采用转录组学方法研究了农业害虫 Anasa tristis 与 Caballeronia 属细菌之间的互利共生如何影响昆虫共生器官局部和整个昆虫宿主的基因表达。同时，我们还确定 Caballeronia 的定殖是否会影响昆虫宿主对感染植物病原体 Serratia marcescens（它将病原体传播给植物）的反应。我们发现，感染 S. marcescens 不会引起明显的基因表达差异。这是一个令人惊讶的发现，因为以前的研究表明，与共生个体相比，共生的三疣梭菌能迅速清除 S. marcescens 感染。我们的研究结果表明，A. tristis 的共生组织和非共生组织在基因表达上存在很大差异，尤其是在共生体成功定殖之后。我们发现有证据表明，在共生器官内，宿主免疫力局部下调，细胞通讯功能上调，这些功能可促进三裂叶蓟马-Caballeronia共生的成功。
{"title":"Differential gene expression in the insect vector Anasa tristis in response to symbiont colonization but not infection with a vectored phytopathogen","authors":"S. Mendiola, Jason Z. Chen, Ben Lukubye, D. Civitello, Nic M Vega, Nicole M. Gerardo","doi":"10.3389/fevo.2024.1390625","DOIUrl":"https://doi.org/10.3389/fevo.2024.1390625","url":null,"abstract":"Many insects selectively associate with specific microbes in long-term, symbiotic relationships. Maintaining these associations can be vital for the insect hosts’ development, but insects must also contend with potential coinfections from other microbes in the environment. Fending off microbial threats while maintaining mutualistic microbes has resulted in many insects developing specialized symbiotic organs to house beneficial microbes. Though locally concentrated in these organs, symbiont establishment can have global consequences for the insect, including influence over the success of coinfecting microbes in colonizing the insect host. We use a transcriptomic approach to examine how the mutualistic symbiosis between the agricultural pest Anasa tristis and bacteria in the genus Caballeronia affects insect gene expression locally within the symbiotic organs and in the insect host at large. We simultaneously determine whether Caballeronia colonization impacts insect host responses to infection with the plant pathogen Serratia marcescens, which it vectors to plants. We found that no significant differential gene expression was elicited by infection with S. marcescens. This was a surprising finding given previous work indicating that symbiotic A. tristis clear S. marcescens infection rapidly compared to aposymbiotic individuals. Our results indicate that symbiotic and nonsymbiotic tissues in A. tristis differ greatly in their gene expression, particularly following successful symbiont colonization. We found evidence for local downregulation of host immunity and upregulation of cell communication within the symbiotic organs, functions which can facilitate the success of the A. tristis-Caballeronia symbiosis.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141108080","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-22DOI: 10.3389/fevo.2024.1359201
Jaran Hopkins, Gabriel Marcelo Santos-Elizondo, Francis Villablanca
Determining best methods to detect individuals and monitor populations that balance effort and efficiency can assist conservation and land management. This may be especially true for small, non-charismatic species, such as rodents (Rodentia), which comprise 39% of all mammal species. Given the importance of rodents to ecosystems, and the number of listed species, we tested two commonly used detection and monitoring methods, live traps and camera traps, to determine their efficiency in rodents. An artificial-intelligence machine-learning model was developed to process the camera trap images and identify the species within them which reduced camera trapping effort. We used occupancy models to compare probability of detection and occupancy estimates for six rodent species across the two methods. Camera traps yielded greater detection probability and occupancy estimates for all six species. Live trapping yielded biasedly low estimates of occupancy, required greater effort, and had a lower probability of detection. Camera traps, aimed at the ground to capture the dorsal view of an individual, combined with machine learning provided a practical, noninvasive, and low effort solution to detecting and monitoring rodents. Thus, camera trapping with machine learning is a more sustainable and practical solution for the conservation and land management of rodents.
{"title":"Detecting and monitoring rodents using camera traps and machine learning versus live trapping for occupancy modeling","authors":"Jaran Hopkins, Gabriel Marcelo Santos-Elizondo, Francis Villablanca","doi":"10.3389/fevo.2024.1359201","DOIUrl":"https://doi.org/10.3389/fevo.2024.1359201","url":null,"abstract":"Determining best methods to detect individuals and monitor populations that balance effort and efficiency can assist conservation and land management. This may be especially true for small, non-charismatic species, such as rodents (Rodentia), which comprise 39% of all mammal species. Given the importance of rodents to ecosystems, and the number of listed species, we tested two commonly used detection and monitoring methods, live traps and camera traps, to determine their efficiency in rodents. An artificial-intelligence machine-learning model was developed to process the camera trap images and identify the species within them which reduced camera trapping effort. We used occupancy models to compare probability of detection and occupancy estimates for six rodent species across the two methods. Camera traps yielded greater detection probability and occupancy estimates for all six species. Live trapping yielded biasedly low estimates of occupancy, required greater effort, and had a lower probability of detection. Camera traps, aimed at the ground to capture the dorsal view of an individual, combined with machine learning provided a practical, noninvasive, and low effort solution to detecting and monitoring rodents. Thus, camera trapping with machine learning is a more sustainable and practical solution for the conservation and land management of rodents.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141109117","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-22DOI: 10.3389/fevo.2024.1388643
M. Kouba, Luděk Bartoš, Filip Tulis, Simona Stehlíková Sovadinová, E. Korpimäki
Offspring survival rates in altricial birds during the post-fledging period are an essential factor in determining the fitness of parents and have a significant impact on general population dynamics. However, our current knowledge of post-fledging mortality and its causes remains fragmentary in most bird species, and even less information is available on the mortality of individuals of the same species in different environments. In order to address this gap in our knowledge, we studied fledgling mortality and its causes in Tengmalm’s owls (Aegolius funereus) during six breeding seasons in Central and North Europe using radio-telemetry. A total of 80 nestlings from 18 nests in Czechia (2010–2012, 2015) and 60 nestlings from 24 nests in Finland (2019, 2021) were radio-tracked during the post-fledging dependence period. The overall survival rate was much higher in Czechia (83%) than in Finland (53%), with predation identified as the primary cause of mortality in both areas. Avian predation was far higher in Finland, but mammalian predation was equivalent at both study sites. Pine martens (Martes martes) and goshawks (Accipiter gentilis) were the most common predators in Czechia and Finland, respectively. Starvation and disease, or mostly a combination of both, formed the second most common cause of death in both areas but were much more frequent in Finland than in Czechia. Offspring survival in both study sites was considerably higher in years of food abundance than in those of food scarcity. We suggest that the interactive effects of infections and poor body condition due to scarcity of main prey species induced higher mortality rates in offspring, particularly in the more challenging environment of North Europe. In contrast, fledgling owls were found to be able to fight off infections more successfully during rich food seasons. Finally, we encourage researchers to pay greater attention to the mutual influences of parasites and their definitive hosts and stress the importance of using radio or satellite tracking for mortality studies to identify causes of death more accurately.
{"title":"Survival rates and causes of death in Tengmalm’s owl offspring during the post-fledging dependence period in Central and North Europe","authors":"M. Kouba, Luděk Bartoš, Filip Tulis, Simona Stehlíková Sovadinová, E. Korpimäki","doi":"10.3389/fevo.2024.1388643","DOIUrl":"https://doi.org/10.3389/fevo.2024.1388643","url":null,"abstract":"Offspring survival rates in altricial birds during the post-fledging period are an essential factor in determining the fitness of parents and have a significant impact on general population dynamics. However, our current knowledge of post-fledging mortality and its causes remains fragmentary in most bird species, and even less information is available on the mortality of individuals of the same species in different environments. In order to address this gap in our knowledge, we studied fledgling mortality and its causes in Tengmalm’s owls (Aegolius funereus) during six breeding seasons in Central and North Europe using radio-telemetry. A total of 80 nestlings from 18 nests in Czechia (2010–2012, 2015) and 60 nestlings from 24 nests in Finland (2019, 2021) were radio-tracked during the post-fledging dependence period. The overall survival rate was much higher in Czechia (83%) than in Finland (53%), with predation identified as the primary cause of mortality in both areas. Avian predation was far higher in Finland, but mammalian predation was equivalent at both study sites. Pine martens (Martes martes) and goshawks (Accipiter gentilis) were the most common predators in Czechia and Finland, respectively. Starvation and disease, or mostly a combination of both, formed the second most common cause of death in both areas but were much more frequent in Finland than in Czechia. Offspring survival in both study sites was considerably higher in years of food abundance than in those of food scarcity. We suggest that the interactive effects of infections and poor body condition due to scarcity of main prey species induced higher mortality rates in offspring, particularly in the more challenging environment of North Europe. In contrast, fledgling owls were found to be able to fight off infections more successfully during rich food seasons. Finally, we encourage researchers to pay greater attention to the mutual influences of parasites and their definitive hosts and stress the importance of using radio or satellite tracking for mortality studies to identify causes of death more accurately.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141108845","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-22DOI: 10.3389/fevo.2024.1385972
Tae-June Choi, Hyung-Eun An, Min-Ho Mun, Seung-Min Han, Chang-Bae Kim
The gut microbiota plays a crucial role in host physiology and the disruption of host–microbiota relationships caused by environmental stressors can impact host growth and survival. In this study, we used Daphnia galeata as a model organism to investigate the interactive effects of fish kairomones on the life-history traits and gut microbiota alterations of D. galeata, as well as the relationship between life-history traits and gut microbiota composition. The presence of fish kairomones enhanced fecundity, decreased growth, and altered gut microbiota, with significant changes in alpha diversity but not in beta diversity in the genotype KB5 of D. galeata. Statistical analysis revealed that the relative abundance of the Pseudomonadaceae family significantly increased upon exposure to fish kairomone, while the relative abundance of the Comamonadaceae family significantly decreased. The decreased growth in genotype KB5 may be associated with a significant increase in Pseudomonas, a member of the family Pseudomonadaceae, which is generally deficient in essential fatty acids, potentially negatively impacting growth. Meanwhile, it is speculated that the significant decrease in Limnohabitans belonging to the Comamonadaceae family is associated with the reduction of body size and increased fecundity of KB5 when exposed to fish kairomones. Furthermore, the genus Candidatus Protochlamydia was observed only under the fish kairomones-treated condition. These data suggest that variations in host life-history traits related to reproduction and growth are potentially associated with the relative abundance or presence of these microbial genera. Our research findings provide valuable insights into understanding the impact of biotic stress on the interaction between hosts and microbiota.
{"title":"Variations in gut microbiota associated with changes in life-history traits of Daphnia galeata induced by fish kairomones","authors":"Tae-June Choi, Hyung-Eun An, Min-Ho Mun, Seung-Min Han, Chang-Bae Kim","doi":"10.3389/fevo.2024.1385972","DOIUrl":"https://doi.org/10.3389/fevo.2024.1385972","url":null,"abstract":"The gut microbiota plays a crucial role in host physiology and the disruption of host–microbiota relationships caused by environmental stressors can impact host growth and survival. In this study, we used Daphnia galeata as a model organism to investigate the interactive effects of fish kairomones on the life-history traits and gut microbiota alterations of D. galeata, as well as the relationship between life-history traits and gut microbiota composition. The presence of fish kairomones enhanced fecundity, decreased growth, and altered gut microbiota, with significant changes in alpha diversity but not in beta diversity in the genotype KB5 of D. galeata. Statistical analysis revealed that the relative abundance of the Pseudomonadaceae family significantly increased upon exposure to fish kairomone, while the relative abundance of the Comamonadaceae family significantly decreased. The decreased growth in genotype KB5 may be associated with a significant increase in Pseudomonas, a member of the family Pseudomonadaceae, which is generally deficient in essential fatty acids, potentially negatively impacting growth. Meanwhile, it is speculated that the significant decrease in Limnohabitans belonging to the Comamonadaceae family is associated with the reduction of body size and increased fecundity of KB5 when exposed to fish kairomones. Furthermore, the genus Candidatus Protochlamydia was observed only under the fish kairomones-treated condition. These data suggest that variations in host life-history traits related to reproduction and growth are potentially associated with the relative abundance or presence of these microbial genera. Our research findings provide valuable insights into understanding the impact of biotic stress on the interaction between hosts and microbiota.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141108993","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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