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Comparison of intra-assay and inter-assay reproducibility and positive detection times of two different (BacT/Alert 3D and Autobio BC) commercial blood culture systems. 比较两种不同的商用血液培养系统(BacT/Alert 3D和Autobio BC)的测定内和测定间重现性及阳性检测时间。
IF 1.4 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-11-21 DOI: 10.1016/j.ijmmb.2024.100754
Nilgün Kansak, Nilay Zeynep Kalender, Neslihan Arıcı, Rıza Adaleti, Sebahat Aksaray, Handan Ankaralı, Nevriye Gönüllü

Purpose: In our study, we aimed to compare the performance of the BacT/Alert 3D (bioMerieux, France) system, which is currently used in our laboratory, and the Autobio BC (Autobio, China) system, which was newly introduced in our country, using standard and clinical isolates.

Methods: Bacterial suspension was prepared by two technicians on the same day and three consecutive days from five different standard strains with 0.5 McFarland turbidity, then serial dilution to a final concentration was adjusted and was simultaneously inoculated in aerobic blood culture bottles. The bacterial concentration was measured by making a quantitative counting plate. The same procedure was also performed for 55 clinical isolates belonging to eleven species. After simulated bacteremia with standard and clinical isolates, the growth results were confirmed by inoculation from positive blood culture bottles onto solid medium and identification was made in the next day with MALDI-TOF MS (bioMérieux). In each study, sterile saline and blood was inoculated into the bottles as a negative control to check contamination. Intra-assay and inter-assay reproducibility of recovery rates and detection times of standard strains; recovery rates and detection times of clinical isolates were compared for both systems.

Results: Recovery rates were 100 % in both systems, and when positive detection times were compared, it was found that there was no difference between the two devices in clinical isolates (p:0.262) but that Autobio BC gave significantly (p < 0.001) earlier results in standard strains.

Conclusions: In our simulated bloodstream infection study, Autobio BC was found to be comparable with BacT/Alert 3D, both recovery rates and growth detection time performance were found to be very good, and it can be used in routine microbiology laboratories.

目的:我们的研究旨在使用标准菌株和临床分离菌株,比较我们实验室目前使用的 BacT/Alert 3D(法国生物梅里埃公司)系统和我国新引进的 Autobio BC(中国 Autobio 公司)系统的性能:细菌悬液由两名技术人员在同一天和连续三天从五种不同的标准菌株中制备,浊度为 0.5 McFarland,然后连续稀释至最终浓度并同时接种到需氧血液培养瓶中。通过制作定量计数板测量细菌浓度。对属于 11 个菌种的 55 个临床分离菌也进行了同样的处理。用标准菌和临床分离菌模拟菌血症后,将阳性血液培养瓶接种到固体培养基上,确认生长结果,第二天用 MALDI-TOF MS(生物梅里埃)进行鉴定。在每项研究中,都将无菌生理盐水和血液接种到瓶中作为阴性对照,以检查污染情况。比较了两种系统对标准菌株的回收率和检测时间、临床分离菌株的回收率和检测时间的测定内和测定间重现性:结果:两种系统的回收率均为 100%,在比较阳性检测时间时发现,两种设备对临床分离菌株的检测时间没有差异(p:0.262),但 Autobio BC 的检测时间明显(pConclusions):在我们的模拟血流感染研究中发现,Autobio BC 与 BacT/Alert 3D 的性能相当,回收率和生长检测时间的表现都很好,可用于常规微生物实验室。
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引用次数: 0
"The Nexus of Extensively Drug-Resistant Gram-Negative Bacteria and Intensive Care: Elucidating Propagation Patterns to Fortify Infection Control Measures". "广泛耐药革兰氏阴性菌与重症监护的关联:阐明传播模式以强化感染控制措施"。
IF 1.4 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-11-18 DOI: 10.1016/j.ijmmb.2024.100758
Debasish Biswal, Sandeep Mangla, Sadia Khan, Aayush Chawla, Pankhuri Kumari, Anubhav Pandey, Sharmila Sengupta
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引用次数: 0
Pattern of Rapidly growing Mycobacteria (RGM) species isolated from clinical samples: A 10-year retrospective study in a tertiary care hospital of Bangladesh. 从临床样本中分离出的快速生长分枝杆菌(RGM)种类的模式:孟加拉国一家三级医院的 10 年回顾性研究。
IF 1.4 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-11-14 DOI: 10.1016/j.ijmmb.2024.100756
Lovely Barai, Mili Rani Saha, Tanjila Rahman, Marium Sukanya, Jannatul Ferdous, Adeeba Khanduker, Rokibul Hasan, TasfiaTasnim Nova

Purpose: Infections caused by rapidly growing mycobacteria (RGM) are increasing worldwide. The study was conducted in a microbiological laboratory of Bangladesh to determine the pattern of detection of RGM from clinical samples.

Methods: All laboratory culture records of RGM from 2012 to 2022 were collected retrospectively and analyzed.

Results: A total 62 RGM infected patients with surgical site infection (74.1%), injection site and skin abscess (9.7%), septicemia (4.8%) and UTI (1.6%) were identified. The annual isolation frequency of RGM increased 4.8% to 29.1% in between year 2012 and 2022. RGM infected patients (14.5%) were mistakenly treated with first line anti tubercular drug before correct microbiological diagnosis (median, IQR; 3, 2-5 months). Out of 23 RGM isolates, 86.9% were M. abscessus and rest 13.1% were M. fortuitum. Most of them (≥95%) were sensitive to amikacin, linezolid, clarithromycin where as 27.1% to imipenem and ciprofloxacin, 40% to cefoxitin, 35.3% and 1.7% to doxycycline and co-trimoxazole respectively.

Conclusion: Misdiagnosis or delay in diagnosis and erroneous treatment with first line anti tubercular drug may cause prolong morbidity and therapeutic failure to patients with RGM infection. So, early and appropriate diagnosis is crucial for successful outcome.

目的:快速生长分枝杆菌(RGM)引起的感染在全球范围内呈上升趋势。本研究在孟加拉国的一家微生物实验室进行,以确定从临床样本中检测 RGM 的模式:方法:回顾性收集并分析了 2012 年至 2022 年期间所有的 RGM 实验室培养记录:结果:共发现62名RGM感染者,他们分别患有手术部位感染(74.1%)、注射部位和皮肤脓肿(9.7%)、败血症(4.8%)和UTI(1.6%)。从 2012 年到 2022 年,RGM 的年分离频率增加了 4.8%,达到 29.1%。RGM感染者(14.5%)在得到正确的微生物学诊断前(中位数,IQR;3,2-5个月)被误用一线抗结核药物治疗。在 23 例 RGM 分离物中,86.9% 为脓肿霉菌,其余 13.1% 为 fortuitum 霉菌。其中大部分(≥95%)对阿米卡星、利奈唑胺、克拉霉素敏感,27.1%对亚胺培南和环丙沙星敏感,40%对头孢西丁敏感,35.3%和1.7%分别对多西环素和联合曲唑敏感:误诊或延误诊断以及错误地使用一线抗结核药物治疗可能会导致 RGM 感染患者发病时间延长和治疗失败。因此,早期和适当的诊断是成功治疗的关键。
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引用次数: 0
Testing new waters in management of Stenotrophomonas maltophilia blood stream infection in a post cardiac surgery patient 试水心脏手术后患者血流感染的嗜麦芽糖血单胞菌管理。
IF 1.4 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.ijmmb.2024.100746
Ekadashi Rajni , Ashish Sharma , Kriti Goyal , Divyansh Gupta
Hospital acquired infections are the most common non-cardiac complications after cardiac surgery. Organisms commonly found in this cohort of patients include Klebsiella spp, Escherichia coli, Pseudomonas spp, Staphylococcus aureus, Coagulase negative Staphylococcus and Enterococcus spp etc. We hereby present a case of post cardiac surgery patient presenting with Stenotrophomonas maltophilia bloodstream infection. Combination of ceftazidime-avibactam (CZA) and aztreonam(AT) was used as inactivity was exhibited to primary panel of drugs. Broth disc elution testing was done to exhibit synergy between CZA and AT. This case highlights the growing need for active interaction between the treating physician and the microbiologist.
医院感染是心脏手术后最常见的非心脏并发症。这类患者中常见的细菌包括克雷伯氏菌属、大肠埃希氏菌属、假单胞菌属、金黄色葡萄球菌、凝固酶阴性葡萄球菌和肠球菌属等。我们在此介绍一例心脏手术后患者出现嗜麦芽血单胞菌血流感染的病例。由于头孢唑肟-阿维菌素(CZA)和阿曲南(AT)对主要药物无效,因此使用了这两种药物的复方制剂。肉汤洗脱试验显示头孢他啶-阿维菌素(CZA)和阿曲南(AT)具有协同作用。该病例突出表明,治疗医生和微生物学家之间的积极互动需求日益增长。
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引用次数: 0
A vector borne, airborne and food borne infection with secondary hemophagocytic lymphohistocytosis: Case of triple infections in an immuno-competent patient 病媒传播、空气传播和食物传播感染并继发嗜血细胞淋巴组织细胞增多症:免疫功能正常患者的三重感染病例。
IF 1.4 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.ijmmb.2024.100752
Abdul Nafey Kazi , Muzeer Ahmed , Muhammad Arsalan Wasim , Lubna Iqbal Abbasi , Fivzia Farooq Herekar , Muhammad Junaid Patel
Pakistan is endemic to several bacterial, parasitic and viral infections including tuberculosis, malaria and dengue that account for a high rate of mortality each year. These different types of infections can occur through various routes of transmission and concurrently in individuals, especially in immunocompromised but rarely among immunocompetent. We report a case of a 25 year old immunocompetent female who was admitted with an initial diagnosis of dengue fever and diagnosed as having co-infection of COVID-19 and Brucella leading to secondary hemophagocytic lymphohistiocytosis (HLH). She was managed for all three infections and complications simultaneously.
巴基斯坦是多种细菌、寄生虫和病毒感染的流行区,包括结核病、疟疾和登革热,每年都造成很高的死亡率。这些不同类型的感染可通过各种传播途径同时发生在个人身上,尤其是免疫力低下的人,但免疫力正常的人却很少感染。我们报告了一例 25 岁免疫功能健全的女性病例,她入院时初步诊断为登革热,后被诊断为 COVID-19 和布鲁氏菌的合并感染,导致继发性嗜血细胞淋巴组织细胞增多症(HLH)。她同时接受了三种感染和并发症的治疗。
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引用次数: 0
Fasciolopsis buski isolated from human host, India has distinct clade based on nuclear ribosomal DNA sequences 根据核核糖体 DNA 序列,从印度人类宿主中分离出的 Fasciolopsis buski 具有独特的支系。
IF 1.4 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.ijmmb.2024.100757
Sandhya Chaurasiya , Aradhana Singh , Anurag Tiwari , Tuhina Banerjee
Fasciolopsiasis caused by Fasciolopsis buski, is a significant cause of morbidity. In the present study F. buski detected during endoscopy of a 50-year-old male patient form Uttar Pradesh, India was used for phylogenetic analysis based on 28S rDNA and ITS2 regions. The parasite was genetically similar to an isolate of pig from Meghalaya. The intra-species genetic variation for 28S rDNA was 1–3% (India), 5% (Vietnam) and for ITS2, 1–2% (India) while 17 % from Vietnam. Thus, F. buski from humans or pigs from India were closely related than those from Vietnam and China which were grouped into separate clades.
由 Fasciolopsis buski 引起的鱼鳞病是发病的一个重要原因。本研究根据 28S rDNA 和 ITS2 区域对在印度北方邦一名 50 岁男性患者的内窥镜检查中检测到的 F. buski 进行了系统发育分析。该寄生虫在遗传学上与梅加拉亚邦的猪分离株相似。28S rDNA 的种内遗传变异为 1-3%(印度)和 5%(越南),ITS2 的种内遗传变异为 1-2%(印度)和 17%(越南)。因此,与越南和中国的F. buski相比,印度的人或猪与F. buski的亲缘关系更为密切,而越南和中国的F. buski则被划分为不同的支系。
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引用次数: 0
Musculoskeletal melioidosis-a retrospective review of 22 cases from a tertiary care centre in South Tamilnadu 南泰米尔纳德邦一家三级医疗中心的 22 个病例的回顾性研究。
IF 1.4 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.ijmmb.2024.100750
G. Vithiya , G. Rajalakshmi Preethi , P. Shunmuga Sundaram , T. Rajendran
A retrospective review of culture confirmed musculoskeletal melioidosis reported between December 2014 and February 2024 was conducted. 22 of 100 patients with culture proven melioidosis infection had musculoskeletal involvement. Median age was 47 years with 95.4 % being males. Osteomyelitis, septic arthritis and septic arthritis along with adjacent osteomyelitis were observed in 12, 9 and 4 cases respectively. All isolates were susceptible to meropenem and susceptible increased exposure to ceftazidime, doxycycline and cotrimoxazole. Twelve patients underwent surgical procedures. Four patients who died due to septicemia had multisystem involvement with positive blood cultures.
我们对 2014 年 12 月至 2024 年 2 月期间报告的经培养证实的肌肉骨骼类美拉德病进行了回顾性研究。在100名经培养证实感染了类鼻疽的患者中,有22名患者的肌肉骨骼受累。中位年龄为47岁,95.4%为男性。骨髓炎、化脓性关节炎和化脓性关节炎合并邻近骨髓炎的病例分别为 12 例、9 例和 4 例。所有分离菌株均对美罗培南敏感,对头孢他啶、强力霉素和复方新诺明的敏感性增加。12 名患者接受了外科手术。因脓毒症死亡的四名患者涉及多个系统,血液培养呈阳性。
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引用次数: 0
Neuromelioidosis – A retrospective review of thirteen cases from a tertiary care centre from South India 神经髓鞘病--对印度南部一家三级医疗中心十三例病例的回顾性研究。
IF 1.4 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.ijmmb.2024.100751
G. Vithiya , Preethi G. Rajalakshmi , P Shunmuga Sundaram , T. Rajendran
Neurologic melioidosis warrants attention in view of its rarity and lethal consequences. We performed a retrospective review of culture confirmed neurologic melioidosis reported between 2017 and 2023. Thirteen patients were identified with median age 43 years and all but three were males. Brain parenchyma was involved in 57 % cases (7/13) as cerebritis, encephalitis and macro abscess or micro abscess. Three patients had myelitis with spinal cord micro abscess and cerebral venous thrombosis in three other patients. Five patients died during hospitalization. Two were discharged against medical advice due to financial constraints. Six survivors were followed between one and eight months.
鉴于其罕见性和致命后果,神经性美拉德氏病值得关注。我们对 2017 年至 2023 年间报告的经培养确诊的神经性美拉德氏病进行了回顾性研究。共发现 13 名患者,中位年龄为 43 岁,除 3 名男性外,其余均为男性。57%的病例(7/13)脑实质受累,表现为脑炎、脑炎、大脓肿或小脓肿。三名患者患有脊髓炎和脊髓小脓肿,另有三名患者患有脑静脉血栓。五名患者在住院期间死亡。两名患者因经济拮据,不听医嘱出院。六名幸存者接受了一至八个月的随访。
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引用次数: 0
Synergistic approach of ertapenem and flucloxacillin or cefazolin for addressing persistent methicillin susceptible Staphylococcus aureus bacteremia 用厄他培南和氟氯西林或头孢唑啉的协同作用来解决对甲氧西林敏感的金黄色葡萄球菌持续性菌血症。
IF 1.4 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.ijmmb.2024.100755
Yamuna Devi Bakthavatchalam , Rajiv Karthik , Anand Ashok , Kamini Walia (Scientist G) , Harathi Ragothaman , Soniya Krishnamoorthy , Yuvasri Manokaran , Balaji Veeraraghavan
In the present study, we determine the synergistic activity of ertapenem with cefazolin and flucloxacillin against type A beta-lactamase producing Methicillin susceptible Staphylococcus aureus isolate. In the time kill assay, at standard inoculum, ertapenem with cefazolin showed >1 log kill and ertapenem with flucloxacillin demonstrated >2 log kill. When tested at high inoculum, both combinations achieved >1 log kill at 1x MIC.
在本研究中,我们确定了厄他培南与头孢唑啉和氟氯西林对产生甲氧西林敏感性金黄色葡萄球菌的 A 型β-内酰胺酶的协同活性。在时间杀灭试验中,在标准接种量下,厄他培南与头孢唑啉的杀灭率大于 1 log,厄他培南与氟氯西林的杀灭率大于 2 log。在高接种量下进行测试时,这两种组合在 1x MIC 时的杀灭率均大于 1 log。
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引用次数: 0
Chandipura virus resurgence: Insights from Indian outbreaks and the path forward 钱迪普拉病毒卷土重来:印度疫情的启示与未来之路
IF 1.4 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.ijmmb.2024.100749
Rahul Garg , Abhijit Kumar Prasad , Pragya Agarwala

Background

First isolated in 1965 from a case of febrile encephalopathy, the Chandipura virus (CHPV) causes sporadic cases as well as periodic outbreaks of encephalitis in parts of India. Transmitted by sandflies and mosquitoes, CHPV infection has high mortality within 48 h of hospitalization, with children bearing the brunt of the illness. The virus garnered global attention in the middle of 2024 as India witnessed its largest outbreak in the last two decades.

Objective

This article aims to synthesise the existing knowledge on various aspects of CHPV and outline current actions needed as well as potential directions for future research.

Content

Between early June and August 15th, 2024, India reported 245 cases of encephalitis from the states of Gujarat and Rajasthan, 64 of which were laboratory-confirmed CHPV infections. The mortality toll of the outbreak was 82, accounting for a case fatality rate of 33 %. With this outbreak, the virus has expanded its niche from central and southern to north-western India. Significant advancements in the understanding of the neuropathogenesis of the virus and the development of diagnostic assays have been made in the 21st century. However, no specific antiviral drugs or vaccines are available. A G-protein-based recombinant vaccine and an inactivated vaccine have shown favourable results in pre-clinical trials. The need of the hour is to fast-track the development of an effective vaccine. A high suspicion for early identification and prompt referral of cases, decentralized diagnostic facilities, sensitization of healthcare workers, integrated vector management and effective reporting and surveillance systems are all needed to curb the menace of this perilous pathogen. The current outbreak should serve as a wake-up call to foster intersectoral collaboration between policymakers, public health experts, epidemiologists, virologists, neurologists, paediatricians, and anthropologists to develop and implement effective strategies against the virus.
背景钱迪普拉病毒(CHPV)于 1965 年首次从一例发热性脑病病例中分离出来,在印度部分地区引起零星病例和周期性脑炎爆发。CHPV 感染通过沙蝇和蚊子传播,住院 48 小时内死亡率很高,儿童首当其冲。2024 年年中,印度爆发了近二十年来规模最大的一次疫情,因此该病毒引起了全球关注。内容2024 年 6 月初至 8 月 15 日期间,印度古吉拉特邦和拉贾斯坦邦报告了 245 例脑炎病例,其中 64 例经实验室确诊为 CHPV 感染。疫情造成 82 人死亡,病死率为 33%。随着疫情的爆发,该病毒的传播范围已从印度中部和南部扩展到西北部。进入 21 世纪以来,人们对该病毒神经发病机制的认识和诊断方法的开发都取得了重大进展。然而,目前还没有专门的抗病毒药物或疫苗。一种基于 G 蛋白的重组疫苗和一种灭活疫苗在临床前试验中显示出良好的效果。当务之急是快速开发有效的疫苗。要遏制这种危险病原体的威胁,就必须高度怀疑病例的早期识别和及时转诊、建立分散的诊断设施、提高医护人员的敏感性、进行综合病媒管理以及建立有效的报告和监测系统。当前的疫情应该成为一个警钟,促进决策者、公共卫生专家、流行病学家、病毒学家、神经学家、儿科医生和人类学家之间的跨部门合作,以制定和实施有效的病毒防治战略。
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引用次数: 0
期刊
Indian Journal of Medical Microbiology
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