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E3 ubiquitin ligase components in GtoPdb v.2023.1 GtoPdb v.2023.1中的E3泛素连接酶组分
Pub Date : 2023-04-26 DOI: 10.2218/gtopdb/f1023/2023.1
E. Faccenda, R. Layfield
Ubiquitination (a.k.a. ubiquitylation) is a protein post-translational modification that typically requires the sequential action of three enzymes: E1 (ubiquitin-activating enzymes), E2 (ubiquitin-conjugating enzymes), and E3 (ubiquitin ligases) [30]. Ubiquitination of proteins can target them for proteasomal degradation, or modulate cellular processes including cell cycle progression, transcriptional regulation, DNA repair and signal transduction. E3 ubiquitin ligases, of which there are >600 in humans, are a family of highly heterogeneous proteins and protein complexes that recruit ubiquitin-loaded E2 enzymes to mediate transfer of the ubiquitin molecule from the E2 to protein substrates. Target substrate specificity is determined by a substrate recognition subunit within the E3 complex. E3 ligases are being exploited as pharmacological targets to facilitate targeted protein degradation (TPD), as an alternative to small molecule inhibitors [3], through the development of proteolysis targeting chimeras (PROTACs) and molecular glues.
泛素化(Ubiquitination,又称泛素化)是一种蛋白质翻译后修饰,通常需要三种酶的连续作用:E1(泛素激活酶)、E2(泛素偶联酶)和E3(泛素连接酶)[30]。蛋白质的泛素化可以靶向蛋白酶体降解,或调节细胞过程,包括细胞周期进程、转录调节、DNA修复和信号转导。E3泛素连接酶是一个高度异质的蛋白和蛋白复合物家族,人类中有超过600个泛素连接酶,它们招募装载泛素的E2酶来介导泛素分子从E2到蛋白质底物的转移。靶底物特异性由E3复合物内的底物识别亚基确定。通过开发靶向嵌合体(PROTACs)和分子胶,E3连接酶正被用作促进靶向蛋白降解(TPD)的药理学靶点,作为小分子抑制剂的替代品[3]。
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引用次数: 0
SLC6 neurotransmitter transporter family in GtoPdb v.2023.1 GtoPdb v.2023.1中SLC6神经递质转运家族
Pub Date : 2023-04-26 DOI: 10.2218/gtopdb/f144/2023.1
S. Bröer, G. Rudnick
Members of the solute carrier family 6 (SLC6) of sodium- and (sometimes chloride-) dependent neurotransmitter transporters [32, 2, 23, 75] are primarily plasma membrane located and may be divided into four subfamilies that transport monoamines, GABA, glycine and neutral amino acids, plus the related bacterial NSS transporters [109]. The members of this superfamily share a structural motif of 10 TM segments that has been observed in crystal structures of the NSS bacterial homolog LeuTAa, a Na+-dependent amino acid transporter from Aquiflex aeolicus [137] and in several other transporter families structurally related to LeuT [49].
钠依赖性和(有时是氯依赖性)神经递质转运体的溶质载体家族6 (SLC6)的成员[32,2,23,75]主要位于质膜上,可分为四个亚家族,分别转运单胺、GABA、甘氨酸和中性氨基酸,以及相关的细菌NSS转运体[109]。这个超家族的成员共享10个TM片段的结构基元,这在NSS细菌同源物LeuTAa的晶体结构中被观察到,LeuTAa是一种来自水蛭(Aquiflex aeolicus)的Na+依赖性氨基酸转运蛋白[137],以及其他几个与LeuT结构相关的转运蛋白家族[49]。
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引用次数: 0
Adenylyl cyclases (ACs) in GtoPdb v.2023.1 GtoPdb v.2023.1中的腺苷酸环化酶(ACs)
Pub Date : 2023-04-26 DOI: 10.2218/gtopdb/f257/2023.1
C. Dessauer, R. Ostrom, R. Seifert, V. Watts
Adenylyl cyclase, E.C. 4.6.1.1, converts ATP to cyclic AMP and pyrophosphate. Mammalian membrane-delimited adenylyl cyclases (nomenclature as approved by the NC-IUPHAR Subcommittee on Adenylyl cyclases [11]) are typically made up of two clusters of six TM domains separating two intracellular, overlapping catalytic domains that are the target for the nonselective activators Gαs (the stimulatory G protein α subunit) and forskolin (except AC9, [28]). adenosine and its derivatives (e.g. 2',5'-dideoxyadenosine), acting through the P-site,are inhibitors of adenylyl cyclase activity [35]. Four families of membranous adenylyl cyclase are distinguishable: calmodulin-stimulated (AC1, AC3 and AC8), Ca2+- and Gβγ-inhibitable (AC5, AC6 and AC9), Gβγ-stimulated and Ca2+-insensitive (AC2, AC4 and AC7), and forskolin-insensitive (AC9) forms. A soluble adenylyl cyclase (AC10) lacks membrane spanning regions and is insensitive to G proteins.It functions as a cytoplasmic bicarbonate (pH-insensitive) sensor [7].
腺苷酸环化酶(E.C. 4.6.1.1)将ATP转化为环状AMP和焦磷酸。哺乳动物膜界腺苷酸环化酶(由NC-IUPHAR腺苷酸环化酶小组委员会批准的命名法[11])通常由两个由6个TM结构域组成的簇组成,这些结构域分离了两个细胞内重叠的催化结构域,它们是非选择性激活剂Gαs(刺激G蛋白α亚基)和forskolin (AC9除外,[28])的靶标。腺苷及其衍生物(如2',5'-二脱氧腺苷)通过p位点起作用,是腺苷酸环化酶活性的抑制剂[35]。膜腺苷酸环化酶可区分为四个家族:钙调素刺激型(AC1、AC3和AC8), Ca2+和g βγ抑制型(AC5、AC6和AC9), g βγ刺激型和Ca2+不敏感型(AC2、AC4和AC7), forskolin不敏感型(AC9)。可溶性腺苷酸环化酶(AC10)缺乏跨膜区,对G蛋白不敏感。它的功能是细胞质碳酸氢盐(ph不敏感)传感器[7]。
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引用次数: 0
Receptor guanylyl cyclase (RGC) family in GtoPdb v.2023.1 GtoPdb v.2023.1受体鸟酰环化酶(RGC)家族
Pub Date : 2023-04-26 DOI: 10.2218/gtopdb/f1022/2023.1
Annie Beuve, Peter Brouckaert, John C. Burnett, Jr., Andreas Friebe, John Garthwaite, Adrian J. Hobbs, Doris Koesling, Michaela Kuhn, Lincoln R. Potter, Michael Russwurm, Harald H.H.W. Schmidt, Johannes-Peter Stasch, Scott A. Waldman
The mammalian genome encodes seven guanylyl cyclases, GC-A to GC-G, that are homodimeric transmembrane receptors activated by a diverse range of endogenous ligands. These enzymes convert guanosine-5'-triphosphate to the intracellular second messenger cyclic guanosine-3',5'-monophosphate (cyclic GMP). GC-A, GC-B and GC-C are expressed predominantly in the cardiovascular system, skeletal system and intestinal epithelium, respectively. GC-D and GC-G are found in the olfactory neuropepithelium and Grueneberg ganglion of rodents, respectively. GC-E and GC-F are expressed in retinal photoreceptors.
哺乳动物基因组编码7种鸟苷环化酶,从GC-A到GC-G,它们是同二聚体跨膜受体,可被多种内源性配体激活。这些酶将鸟苷-5′-三磷酸转化为细胞内第二信使环鸟苷-3′,5′-单磷酸(环GMP)。GC-A、GC-B和GC-C分别主要表达于心血管系统、骨骼系统和肠上皮。GC-D和GC-G分别存在于啮齿动物的嗅神经上皮和Grueneberg神经节中。GC-E和GC-F在视网膜感光细胞中表达。
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引用次数: 0
ABCB subfamily in GtoPdb v.2023.1 GtoPdb v.2023.1 中的 ABCB 亚家族
Pub Date : 2023-04-26 DOI: 10.2218/gtopdb/f152/2023.1
Mary Vore
The ABCB subfamily is composed of four full transporters and two half transporters. This is the only human subfamily to have both half and full types of transporters. ABCB1 was discovered as a protein overexpressed in certain drug resistant tumor cells. It is expressed primarily in the blood brain barrier and liver and is thought to be involved in protecting cells from toxins. Cells that overexpress this protein exhibit multi-drug resistance [8, 1].
ABCB亚家族由四个全转运蛋白和两个半转运蛋白组成。这是人类亚家族中唯一同时拥有半型和全型转运蛋白的亚家族。ABCB1蛋白在某些耐药肿瘤细胞中被发现过表达。它主要在血脑屏障和肝脏中表达,被认为与保护细胞免受毒素侵害有关。过表达该蛋白的细胞表现为多药耐药[8,1]。
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引用次数: 0
Relaxin family peptide receptors in GtoPdb v.2023.1 松弛素家族肽受体在GtoPdb v.2023.1
Pub Date : 2023-04-26 DOI: 10.2218/gtopdb/f60/2023.1
Alexander I. Agoulnik, Ross A.D. Bathgate, Thomas Dschietzig, Andrew L. Gundlach, Michelle Halls, Craig Smith, Roger Summers
Relaxin family peptide receptors (RXFP, nomenclature as agreed by the NC-IUPHAR Subcommittee on Relaxin family peptide receptors [23, 119]) may be divided into two pairs, RXFP1/2 and RXFP3/4. Endogenous agonists at these receptors are heterodimeric peptide hormones structurally related to insulin: relaxin-1, relaxin, relaxin-3 (also known as INSL7), insulin-like peptide 3 (INSL3) and INSL5. Species homologues of relaxin have distinct pharmacology and relaxin interacts with RXFP1, RXFP2 and RXFP3, whereas mouse and rat relaxin selectively bind to and activate RXFP1 [260]. relaxin-3 is the ligand for RXFP3 but it also binds to RXFP1 and RXFP4 and has differential affinity for RXFP2 between species [259]. INSL5 is the ligand for RXFP4 but is a weak antagonist of RXFP3. relaxin and INSL3 have multiple complex binding interactions with RXFP1 [267] and RXFP2 [132] which direct the N-terminal LDLa modules of the receptors together with a linker domain to act as a tethered ligand to direct receptor signaling [262]. INSL5 and relaxin-3 interact with their receptors using distinct residues in their B-chains for binding, and activation, respectively [321, 152].
松弛素家族肽受体(RXFP,由NC-IUPHAR松弛素家族肽受体小组委员会商定的命名法[231,119])可分为两对,RXFP1/2和RXFP3/4。这些受体的内源性激动剂是与胰岛素结构相关的异二聚肽激素:松弛素-1、松弛素、松弛素-3(也称为INSL7)、胰岛素样肽3 (INSL3)和INSL5。松弛素的物种同源物具有不同的药理作用,松弛素与RXFP1、RXFP2和RXFP3相互作用,而小鼠和大鼠松弛素选择性地结合并激活RXFP1[260]。relaxin-3是RXFP3的配体,但它也与RXFP1和RXFP4结合,并且在不同物种之间对RXFP2具有不同的亲和力[259]。INSL5是RXFP4的配体,但是RXFP3的弱拮抗剂。relaxin和INSL3与RXFP1[267]和RXFP2[132]有多种复杂的结合相互作用,这些相互作用指导受体的n端LDLa模块与连接域一起作为系链配体直接受体信号传导[262]。INSL5和relaxin-3分别通过其b链上不同的残基与受体相互作用以结合和激活[321,152]。
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引用次数: 0
3A. Estrogen receptors in GtoPdb v.2023.1 3 a。雌激素受体在GtoPdb v.2023.1
Pub Date : 2023-04-26 DOI: 10.2218/gtopdb/f96/2023.1
Laurel Coons, Kenneth S. Korach
Estrogen receptor (ER) activity regulates diverse physiological processes via transcriptional modulation of target genes [2]. The selection of target genes and the magnitude of the response, be it induction or repression, are determined by many factors, including the effect of the hormone ligand and DNA binding on ER structural conformation, and the local cellular regulatory environment. The cellular environment defines the specific complement of DNA enhancer and promoter elements present and the availability of coregulators to form functional transcription complexes. Together, these determinants control the resulting biological response.
雌激素受体(ER)活性通过靶基因[2]的转录调节多种生理过程。靶基因的选择和反应的大小,无论是诱导还是抑制,由许多因素决定,包括激素配体和DNA结合对内质网结构构象的影响,以及局部细胞调节环境。细胞环境决定了存在的DNA增强子和启动子元件的特定补体以及形成功能性转录复合物的共调节因子的可用性。这些决定因素共同控制由此产生的生物反应。
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引用次数: 0
Ghrelin receptor in GtoPdb v.2023.1 GtoPdb v.2023.1中的胃饥饿素受体
Pub Date : 2023-04-26 DOI: 10.2218/gtopdb/f28/2023.1
Anthony P. Davenport, Birgitte Holst, Matthias Kleinz, Janet J. Maguire, Bjørn B. Sivertsen
The ghrelin receptor (nomenclature as agreed by the NC-IUPHAR Subcommittee for the Ghrelin receptor [19]) is activated by a 28 amino-acid peptide originally isolated from rat stomach, where it is cleaved from a 117 amino-acid precursor (GHRL, Q9UBU3). The human gene encoding the precursor peptide has 83% sequence homology to rat prepro-ghrelin, although the mature peptides from rat and human differ by only two amino acids [75]. Alternative splicing results in the formation of a second peptide, [des-Gln14]ghrelin with equipotent biological activity [50]. A unique post-translational modification (octanoylation of Ser3, catalysed by ghrelin Ο-acyltransferase (MBOAT4, Q96T53) [134] occurs in both peptides, essential for full activity in binding to ghrelin receptors in the hypothalamus and pituitary, and for the release of growth hormone from the pituitary [59]. Structure activity studies showed the first five N-terminal amino acids to be the minimum required for binding [4], and receptor mutagenesis has indicated overlap of the ghrelin binding site with those for small molecule agonists and allosteric modulators of ghrelin function [45]. An endogenous antagonist and inverse agonist called Liver enriched antimicrobial peptide 2 (Leap2), expressed primarily in hepatocytes and in enterocytes of the proximal intestine [36, 69] inhibits ghrelin receptor-induced GH secretion and food intake [36]. The secretion of Leap2 and ghrelin is inversely regulated under various metabolic conditions [72]. In cell systems, the ghrelin receptor is constitutively active [46], but this is abolished by a naturally occurring mutation (A204E) that results in decreased cell surface receptor expression and is associated with familial short stature [94].
胃饥饿素受体(由NC-IUPHAR小组委员会商定的胃饥饿素受体命名法[19])由最初从大鼠胃中分离出来的28个氨基酸的肽激活,该肽从117个氨基酸的前体(GHRL, Q9UBU3)中分离出来。编码前体肽的人类基因与大鼠的pre - pro-ghrelin有83%的序列同源性,尽管大鼠和人类的成熟肽仅相差两个氨基酸[75]。选择性剪接导致第二种肽的形成,具有同等生物活性的[des-Gln14]ghrelin[50]。两种肽均发生独特的翻译后修饰(由胃饥饿素Ο-acyltransferase (MBOAT4, Q96T53)催化的Ser3辛烷化)[134],这是下丘脑和垂体中与胃饥饿素受体充分结合以及垂体释放生长激素所必需的[59]。结构活性研究表明,前5个n端氨基酸是结合所需的最少氨基酸[4],受体诱变表明,胃饥饿素结合位点与胃饥饿素功能的小分子激动剂和变构调节剂的结合位点重叠[45]。一种内源性拮抗剂和逆激动剂称为肝富集抗菌肽2 (Liver富集抗菌肽2,Leap2),主要表达于肝细胞和近端肠细胞中[36,69],可抑制胃饥饿素受体诱导的生长激素分泌和食物摄入[36]。在各种代谢条件下,Leap2和ghrelin的分泌呈反向调节[72]。在细胞系统中,胃饥饿素受体具有组成性活性[46],但这种活性被一种自然发生的突变(A204E)所消除,这种突变导致细胞表面受体表达减少,并与家族性身材矮小有关[94]。
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引用次数: 0
Neuropeptide S receptor in GtoPdb v.2023.1 GtoPdb v.2023.1中的神经肽S受体
Pub Date : 2023-04-26 DOI: 10.2218/gtopdb/f44/2023.1
Girolamo Caló, Olivier Civelli, Rainer K. Reinscheid, Chiara Ruzza
The neuropeptide S receptor (NPS receptor) responds to the 20 amino-acid peptide neuropeptide S derived from a precursor (NPS, P0C0P6). NPS activates its receptor at low nanomolar concentrations elevating intracellular cAMP and calcium levels [71]. Currently, some peptidic and small molecule NPS receptor antagonists are available as research tools [27, 79, 8, 59]. No NPS receptor ligands are currently used clinically.
神经肽S受体(NPS受体)对源自前体(NPS, P0C0P6)的20个氨基酸肽神经肽S有反应。NPS在低纳摩尔浓度下激活其受体,提高细胞内cAMP和钙水平[71]。目前,一些肽类和小分子NPS受体拮抗剂可作为研究工具[27,79,8,59]。目前临床上还没有使用NPS受体配体。
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引用次数: 0
Inwardly rectifying potassium channels (K<sub>IR</sub>) in GtoPdb v.2023.1 GtoPdb v.2023.1中向内整流钾通道(K&lt;sub&gt;IR&lt;/sub&gt;
Pub Date : 2023-04-26 DOI: 10.2218/gtopdb/f74/2023.1
John P. Adelman, David E. Clapham, Hiroshi Hibino, Atsushi Inanobe, Lily Y. Jan, Andreas Karschin, Yoshihiro Kubo, Yoshihisa Kurachi, Michel Lazdunski, Takashi Miki, Colin G. Nichols, Lawrence G. Palmer, Wade L. Pearson, Henry Sackin, Susumu Seino, Paul A. Slesinger, Stephen Tucker, Carol A. Vandenberg
The 2TM domain family of K channels are also known as the inward-rectifier K channel family. This family includes the strong inward-rectifier K channels (Kir2.x) that are constitutively active, the G-protein-activated inward-rectifier K channels (Kir3.x) and the ATP-sensitive K channels (Kir6.x, which combine with sulphonylurea receptors (SUR1-3)). The pore-forming α subunits form tetramers, and heteromeric channels may be formed within subfamilies (e.g. Kir3.2 with Kir3.3).
K通道的2TM畴族也被称为内整流K通道族。该家族包括组成活性的强内向整流K通道(Kir2.x), g蛋白激活的内向整流K通道(Kir3.x)和atp敏感的K通道(Kir6. x)。x,与磺酰脲受体(SUR1-3)结合)。形成孔隙的α亚基形成四聚体,并且可以在亚族中形成异质通道(例如Kir3.2和Kir3.3)。
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引用次数: 0
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IUPHAR/BPS Guide to Pharmacology CITE
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