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Three Decades of Safeguarding and Promoting Use of Agricultural Biodiversity: Changing Global Perspectives, Paradigm Shifts and Implications 保护和促进农业生物多样性利用的三十年:不断变化的全球视角、范式转变及其影响
IF 0.4 4区 农林科学 Q4 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2021-12-01 DOI: 10.6090/jarq.55.419
Y. Morimoto, P. Maundu
In this study, we explore the global shifts in research priorities and strategies with respect to Plant Genetic Resources (PGR) over a period of nearly 3 decades and also look at changes in donor strategies over the same period, with specific reference to Japanese support to PGR work. We conducted a quantitative text analysis based on reports published by Bioversity International, a leader in PGR issues, and looked at changes in the frequency of appearance of certain terms and words over a 22-year period (1998-2020), divided into six phases. Results show that over the period, Bioversity International’s focus transitioned from an emphasis on collection of genetic resources and conservation in genebanks to conservation through sustainable use across generations. This evolved further to “food” -centered approaches. More recently, the emphasis is shifting to “food system” approaches with emphasis on the linkages between agriculture, environment and nutrition. The priority issues of the organization at the different phases are presented. Over the same period, Japanese government investment strategies have shifted from supporting PGR collection work to building capacity of researchers (in both source countries and Japan) and creating more benefits from PGR including nutrition, health and economic benefits to local societies who are the keepers of the PGR. The involvement of Japanese researchers, including the main author, in the various research activities characteristic of the different phases of the transition is presented. In the current global shift towards food systems approaches where the linkage of agriculture, nutrition, and the environment is emphasized, and the involvement of the private sector encouraged, partnerships with resource rich counters will be considered important in PGR activities in the future. Discipline: Biotechnology Additional key words: conservation, Japan’s assistance, plant genetic resources
在这项研究中,我们探讨了近30年来全球植物遗传资源(PGR)研究重点和策略的变化,并研究了同一时期捐助者策略的变化,具体参考了日本对PGR工作的支持。我们根据PGR问题的领导者Bioversity International发表的报告进行了定量文本分析,并研究了22年间(1998-2020年)某些术语和单词出现频率的变化,并将其分为六个阶段。结果表明,在此期间,生物多样性国际的重点从强调遗传资源的收集和基因库的保护转变为通过跨代可持续利用进行保护。这进一步演变为以“食物”为中心的方法。最近,重点转向“粮食系统”方法,强调农业、环境和营养之间的联系。提出了组织在不同阶段的优先问题。在同一时期,日本政府的投资战略已从支持植物遗传资源收集工作转向(在来源国和日本)建设研究人员的能力,并从植物遗传资源中创造更多的利益,包括营养、健康和经济利益,造福作为植物遗传资源守护者的当地社会。介绍了包括主要作者在内的日本研究人员参与的各种研究活动,这些活动具有转型不同阶段的特点。当前全球转向粮食系统方法,强调农业、营养和环境之间的联系,鼓励私营部门的参与,因此,与资源丰富的国家建立伙伴关系将被认为是未来粮食作物遗传资源活动的重要组成部分。附加关键词:保护,日本援助,植物遗传资源
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引用次数: 0
Climate Change and Social Forestry: An Overview of CIFOR Research on Enhancing Resilience in Boreal and Tropical Forest Landscape 气候变化与社会林业:增强北方和热带森林景观恢复力的CIFOR研究综述
IF 0.4 4区 农林科学 Q4 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2021-12-01 DOI: 10.6090/jarq.55.543
D. Naito, M. Moeliono, V. Chakov, V. Kuptsova, Kusin Kitso, W. Lintangah, R. Martin, N. Yulianti
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引用次数: 0
Improving the Livelihood of Livestock and Farmers and Public Health in Developing Countries through the Provision of Solutions for the Various Risks They Face 通过为发展中国家牲畜和农民面临的各种风险提供解决方案,改善它们的生计和公共卫生
IF 0.4 4区 农林科学 Q4 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2021-12-01 DOI: 10.6090/jarq.55.533
K. Makita, Munenobu Ikegami, Tomoya Matsumoto
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引用次数: 0
Agriculture in the Semi-Arid Tropics with Sustainable Use of Scarce Resources: Contribution of Japanese Scientists through Collaboration with ICRISAT 可持续利用稀缺资源的半干旱热带农业:日本科学家与ICRISAT合作的贡献
IF 0.4 4区 农林科学 Q4 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2021-12-01 DOI: 10.6090/jarq.55.433
S. Tobita
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引用次数: 0
Fish in Sustainable Food Systems of the 21st Century: Role of WorldFish Research on Food and Nutrition Security, Gender Equity, and Natural Resource Conservation 21世纪可持续粮食系统中的鱼类:世界鱼类研究在粮食和营养安全、性别平等和自然资源保护方面的作用
IF 0.4 4区 农林科学 Q4 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2021-12-01 DOI: 10.6090/jarq.55.553
Y. Kura, N. Kawarazuka
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引用次数: 1
Distribution of Pink-pigmented Facultative Methylotrophs Isolated from the Leaves of Potato Grown in Different Regions of Japan 日本不同地区马铃薯叶片中粉色兼性甲基营养体的分布
IF 0.4 4区 农林科学 Q4 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2021-10-01 DOI: 10.6090/jarq.55.341
N. Someya, M. Kubota, Y. Unno, T. Morohoshi
Seed tubers of potato (Solanum tuberosum) plants were grown in five locations in Japan: Hokkaido, Yamagata, Ibaraki, Hiroshima, and Nagasaki. One hundred colonies of pink-pigmented facultative methylotrophs (PPFMs) were isolated from potato leaves at flowering time. The 16S rRNA gene sequences of isolates were determined, and clustering analysis (≥ 99% identity) identified 11 operational taxonomic units (OTUs). Phylogenetic analysis revealed that all OTUs were grouped in genus Methylobacterium. The OTU M9 was distributed among all five collection sites, and other OTUs were distributed among several collection sites. These data indicated that the distribution of PPFMs in the potato phyllosphere differed according to the plant’s geographical location. Discipline: Agricultural Environment Additional key words: 16S rRNA, Methylobacterium, operational taxonomic units, seed tuber
在日本的北海道、山形、茨城县、广岛和长崎五个地方种植了马铃薯(Solanum tuberosum)种子块茎。从马铃薯花期叶片中分离到100个粉红色兼性甲基营养体菌落。对分离株进行16S rRNA基因序列测定,聚类分析(一致性≥99%)鉴定出11个操作分类单元(otu)。系统发育分析表明,所有OTUs均归属于甲基杆菌属。OTU M9分布在所有5个收集点,其他OTU分布在几个收集点。这些数据表明,PPFMs在马铃薯层圈内的分布随植物地理位置的不同而不同。附加关键词:16S rRNA,甲基细菌,操作分类单位,种块茎
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引用次数: 0
Technology Development for Stable Agricultural Production under Adverse Environments and Changing Climate Conditions 不利环境和气候变化条件下稳定农业生产的技术开发
IF 0.4 4区 农林科学 Q4 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2021-10-01 DOI: 10.6090/jarq.55.295
K. Nakashima, T. Urao, Donghe Xu, S. Ando, Masayasu Kato
The second of the United Nations’ 17 Sustainable Development Goals aims to end hunger, achieve food security and improve nutrition, and promote sustainable agriculture. However, it is well known that the agricultural potential in developing regions including Africa has not been fully realized because adverse environments and changing climate conditions impose abiotic (e.g., low soil fertility, droughts) and biotic (e.g., pests, diseases) stresses on plant growth and development. To ensure food and nutrition security in such regions, the Environmental Stress-tolerant Crops project, the High-yielding Biomass Crops project and the Pest and Disease Control project in the Program for Stable Agricultural Production at the Japan International Research Center for Agricultural Sciences aimed to develop technologies and crops with high productivity and adaptability to adverse environments and changing climate conditions. In order to develop crops with environmental stress tolerance and disease resistance, we have clarified and used the genes and loci involved in these traits toward the development of breeding materials. And in order to develop technology for effectively controlling transboundary pests, we have elucidated the ecology of their occurrence and developed pest management technology based on that information. We hope that these materials and technologies will contribute to achieving food and nutrition security in developing regions.
联合国17个可持续发展目标中的第二个目标旨在消除饥饿,实现粮食安全和改善营养,并促进可持续农业。然而,众所周知,包括非洲在内的发展中区域的农业潜力尚未充分发挥,因为不利的环境和不断变化的气候条件对植物的生长和发育造成了非生物(如土壤肥力低、干旱)和生物(如病虫害)的压力。为确保这些地区的粮食和营养安全,日本国际农业科学研究中心的“环境抗逆性作物项目”、“高产生物质作物项目”和“稳定农业生产计划”中的“病虫害防治项目”旨在开发具有高产能、适应恶劣环境和气候变化条件的技术和作物。为了培育具有环境抗性和抗病性的作物,我们对这些性状所涉及的基因和位点进行了澄清和利用,用于育种材料的开发。为了开发有效控制越境有害生物的技术,我们阐明了越境有害生物发生的生态环境,并在此基础上开发了越境有害生物管理技术。我们希望这些材料和技术将有助于在发展中地区实现粮食和营养安全。
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引用次数: 0
General Utilities for Genotyping Study (GUGS): A Comprehensive Application in Genotype and Sequence Data Manipulation 基因分型研究的通用工具(GUGS):基因分型和序列数据操作的综合应用
IF 0.4 4区 农林科学 Q4 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2021-10-01 DOI: 10.6090/jarq.55.333
T. Shimizu
General Utilities for Genotyping Study (GUGS) is a toolbox for aiding the analysis of DNA marker data and its design in Microsoft Excel (MS Excel). GUGS provides more than 100 flexible functions for the manipulation, evaluation, and conversion of genotype data. It also provides functionalities for genotype format conversion to support linkage analysis using JoinMap software, frequency analysis for population genetics, parentage analysis, and statistical genetic analysis. Its functionality for the manipulation of nucleotide or amino acid sequences also assists DNA marker design. These GUGS features enable users to conduct all steps from DNA marker design to preliminary evaluation, data analysis, and format conversion for advanced study in a single environment without having to export/ import data. GUGS is freely available at https://github.com/tokurou/GUGS under the GPL v3 license. Discipline: Crop Science Additional key words: bioinformatics, breeding, DNA marker, genetics, linkage analysis
基因分型研究通用工具(GUGS)是一个工具箱,用于帮助分析DNA标记数据及其在微软Excel (MS Excel)中的设计。GUGS为基因型数据的操作、评估和转换提供了100多种灵活的功能。它还提供了基因型格式转换的功能,以支持使用JoinMap软件进行链接分析,用于群体遗传学的频率分析,亲子分析和统计遗传分析。其操作核苷酸或氨基酸序列的功能也有助于DNA标记设计。这些GUGS功能使用户能够在单一环境中进行从DNA标记设计到初步评估,数据分析和格式转换的所有步骤,以进行高级研究,而无需导出/导入数据。GUGS在GPL v3许可下可在https://github.com/tokurou/GUGS免费获得。附加关键词:生物信息学,育种,DNA标记,遗传学,连锁分析
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引用次数: 0
Reference Genome Sequencing and Advances in Genomic Resources in Common Wheat–Chromosome 6B Project in Japan 普通小麦参考基因组测序及基因组资源研究进展-日本6B染色体项目
IF 0.4 4区 农林科学 Q4 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2021-10-01 DOI: 10.6090/jarq.55.285
F. Kobayashi, Tsuyoshi Tanaka, H. Kanamori, Jianzhon Wu, H. Handa
By successfully sequencing the entire genome of common wheat (Triticum aestivum L.) in 2018, the International Wheat Genome Sequencing Consortium (IWGSC) achieved its goal of publishing the first reference genome sequence of this important crop. During this period, various technological innovations have dramatically evolved genome sequencing technology; these advances have made it possible to rapidly decode large and complex genomes, including that of polyploid wheat. IWGSC completed reference genome sequence by exploiting these latest technologies via two primary approaches, “whole-genome sequencing” and “sequencing by chromosome.” As collaborators in the IWGSC project, a Japanese research team led by the National Agriculture and Food Research Organization was responsible for sequencing chromosome 6B, one of the 21 wheat chromosomes, and contributed to constructing the reference genome sequence. This article presents an outline of reference genome sequence construction and provides an overview of the common wheat genome information obtained. Moreover, it describes the methods used to sequence chromosome 6B, together with the associated analytical data and novel knowledge, including the structural analyses of Nor-B2 and Gli-B2 obtained during this work. Furthermore, it describes the recently undertaken sequencing of the genomes of diploid and tetraploid wheat and reviews the overall development of wheat genomic resources. Discipline: Biotechnology Additional key words: bacterial artificial chromosome library, next-generation sequencing, physical mapping, shotgun sequencing
国际小麦基因组测序联盟(IWGSC)于2018年成功测序了普通小麦(Triticum aestivum L.)的全基因组,实现了发布这一重要作物首个参考基因组序列的目标。在此期间,各种技术创新极大地发展了基因组测序技术;这些进步使得快速解码大而复杂的基因组成为可能,包括多倍体小麦的基因组。IWGSC利用这些最新技术,通过“全基因组测序”和“染色体测序”两种主要方法完成了参考基因组测序。作为IWGSC项目的合作者,由日本国家农业与食品研究机构领导的研究小组负责了21条小麦染色体之一的6B染色体的测序,并对参考基因组序列的构建做出了贡献。本文介绍了参考基因组序列构建的概况,并概述了获得的常见小麦基因组信息。此外,它还描述了用于6B染色体测序的方法,以及相关的分析数据和新知识,包括在这项工作中获得的Nor-B2和Gli-B2的结构分析。此外,还介绍了最近开展的二倍体和四倍体小麦基因组测序,并综述了小麦基因组资源的总体发展情况。附加关键词:细菌人工染色体文库,下一代测序,物理作图,鸟枪测序
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引用次数: 1
Diurnal Dynamics of Nectar Secretion in Cucurbita maxima Duch: Implications for Effective Pollen Transfer by Japanese Wild Pollinators 大葫芦花蜜分泌的日动态:日本野生传粉媒介有效花粉传递的意义
IF 0.4 4区 农林科学 Q4 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2021-10-01 DOI: 10.6090/jarq.55.323
Shoko Nakamura, Hisatomo Taki, Y. Konno
To determine whether visits by wild pollinators correspond well with the physiological patterns of animal-pollinated crops, we investigated the diurnal dynamics of nectar secretion in the male and female flowers of cultivated kabocha squash Cucurbita maxima Duch, and its effect on the temporal visitation pattern by bumblebees, their Japanese wild pollinators, relative to visits by introduced honeybees Apis mellifera L. in Hokkaido, Japan. The amount of nectar secreted and the frequency of pollinator visits were monitored from floral opening at dawn until wilting in the early afternoon. Flowers of both sexes secreted nectar in a unimodal diurnal pattern, with secretion peaking during the middle stage of anthesis. The total production of nectar in female flowers was twice that in male flowers. Although the availability of pollinators varied between days, the frequency of visits by bumblebees corresponded well with the dynamics of nectar secretion by the flowers. The diurnal dynamics of nectar secretion and the large availability of nectar reward in female flowers would increase the probability of transferring viable pollen to female flowers and contributing to fruit production of this crop. Bumblebee visits were negatively correlated with honeybee visits. Although this negative correlation could be explained by the complementary effects of pollinators or competitive exclusion, the effects of introducing honeybees on wild pollinators cannot be easily evaluated and thus should be carefully examined by considering the local environmental context in future studies.
为了确定野生传粉者的访花是否与动物传粉作物的生理模式相吻合,我们在日本北海道研究了栽培的kabocha squash Cucurbita maxima Duch雌雄花的花蜜分泌的昼夜动态,以及它对日本野生传粉者大黄蜂与外来蜜蜂访花的影响。从黎明开花到午后凋谢,监测了花蜜分泌量和传粉者访问频率。雌雄花均以单峰模式分泌花蜜,在花期中期分泌高峰。雌花的花蜜总产量是雄花的两倍。虽然授粉者的可用性在不同的日子里有所不同,但大黄蜂的访问频率与花分泌花蜜的动态相对应。花蜜分泌的昼夜动态和雌花中大量的花蜜奖励增加了花粉向雌花传递的可能性,有助于该作物的果实生产。大黄蜂访视与蜜蜂访视呈负相关。尽管这种负相关可以用传粉媒介的互补效应或竞争性排斥来解释,但引入蜜蜂对野生传粉媒介的影响很难评估,因此在未来的研究中应考虑当地的环境背景,仔细检查。
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引用次数: 1
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Jarq-japan Agricultural Research Quarterly
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