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An Inquiry on the Social and Education Status of Women from Northern Cameroon Suffering Cervical Cancer and the State of Knowledge of their Disease 关于喀麦隆北部患宫颈癌妇女的社会和教育状况以及对其疾病的了解状况的调查
Pub Date : 2017-12-14 DOI: 10.6000/1927-7229.2017.06.04.1
A. H. N. Kamdje, G. Kalgong, R. S. Tagne, J. M. Amvene, C. Nangue
Abstract: Background : Cervical cancer is a major cause of women death worldwide. The reduction of the mortality and morbidity of this pathology depends on the early detection based on powerful suitable screening methods, that will lead to optimal treatment strategies. However in some rural region of developing countries, it is very difficult to get access to standard screening methods, alternative screening methods, cheaper and easy to handle are then useful. Objective : The aim of this work was to test the sensitivity and specificity of VIA (Visual inspection with acetic acid) and VILI (Visual inspection with lugol iodine) as screening test of cervical cancer compared to the Pap Smear, evaluating the feasibility in health formation in the North Cameroon region, of implementing epidemiological surveillance of cervical cancer based on early diagnosis using the VIA-VILI association Method : 309 women age 20 to 62 years were recruited in this study, 307 were included in the statistical analyzes. Each woman was screened for cervical cancer by a conventional Smear and visual inspection with acetic acid 5% and the lugol solution. Results : We found in our study a prevalence of precancerous lesions of cervix at 12.70%. The risks factors of cervical cancer identified are age, matrimonial status, age of first sexual intercourse and parity. The association of VIA and VILI showed a sensitivity, specificity, positive and negative predictive value respectively about 93.58%; 97.01%; 82.01%, 99.04%. Conclusion : Compared to PAP Smear, VIA or VILI could be used as an alternative screening methods for cervical cancer in developing countries. However, histology test was recommended to use a « Gold Standard » to evaluate the test accuracy of VIA/VILI because it can be used to diagnose cancer, while PAP smear cannot.
摘要:背景:宫颈癌是世界范围内女性死亡的主要原因。这种病理的死亡率和发病率的降低取决于基于强大的筛查方法的早期发现,这将导致最佳的治疗策略。然而,在发展中国家的一些农村地区,很难获得标准的筛查方法,因此更便宜和易于操作的替代筛查方法是有用的。目的:比较醋酸目视检查(VIA)和碘目视检查(VILI)与子宫颈抹片检查(Pap Smear)对宫颈癌筛查的敏感性和特异性,评价在北喀麦隆地区卫生院采用VIA-VILI关联法开展基于早期诊断的宫颈癌流行病学监测的可行性。本研究共招募年龄在20 ~ 62岁的女性309例,其中307例纳入统计分析。每个妇女都通过常规涂片和5%醋酸和lugol溶液的目视检查来筛查宫颈癌。结果:在我们的研究中,我们发现宫颈癌前病变的患病率为12.70%。宫颈癌的危险因素包括年龄、婚姻状况、第一次性行为年龄和胎次。VIA与VILI相关性的敏感性、特异性、阳性预测值和阴性预测值分别为93.58%;97.01%;82.01%、99.04%。结论:与巴氏涂片相比,VIA或VILI可作为发展中国家宫颈癌的替代筛查方法。然而,组织学检查被推荐使用“金标准”来评估VIA/VILI的检测准确性,因为它可以用于诊断癌症,而PAP涂片不能。
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引用次数: 0
Association between Molecular Subtypes and Survival in Patients with Breast Cancer 乳腺癌患者分子亚型与生存的关系
Pub Date : 2017-09-06 DOI: 10.6000/1927-7229.2017.06.03.3
M. Eren, A. Eren, B. Yücel, Seher Bahar, A. Çinkaya, R. Matsuno, N. Beşe
Background : Aim of this study is to classify intrinsic subtypes and evaluate the differences in clinical/pathological characteristics and survival outcomes among the molecular types. Patients and Methods : Breast cancer subtypes were classified according to the 2013 St. Gallen Consensus. Five molecular subtypes were determined, Luminal A, Luminal B-like HER2 negative, Luminal B-like HER2 positive, HER2 positive, and triple negative. Data was obtained from the records of patients with invasive breast cancer retrospectively. The differences in clinical/pathological parameters, overall survival and disease-free survival among the molecular subtypes were analyzed. The Kaplan-Meier method, log-rank test and Cox regression tests were used to compare groups. Results : The median follow-up period is 48 months. The Luminal B-HER2 negative was the most prevalent type (26.6%). Patient demographics, tumor characteristics and survival data were analyzed. The Luminal A and Luminal B-HER2 negative subtypes had significantly higher overall survival and disease-free survival rates. Multivariate Cox analysis revealed that tumor stage, more than 3 positive axillary lymph node involvement, and breast cancer subtype as significant factors for overall survival and disease-free survival ( p<0.05 ). Triple Negative subtype had a higher relative hazard of local recurrence and distant metastasis (HR=2.69, 95% CI=1.47; 4.95). Conclusions : Breast cancer subtype has significant impact on overall survival and disease-free survival rates. While Luminal A and luminal B HER2 negative subtypes have better outcome, triple negative and HER2- subtypes remain poor.
背景:本研究的目的是对内在亚型进行分类,并评估分子类型在临床/病理特征和生存结局方面的差异。患者和方法:根据2013年圣加仑共识(St. Gallen Consensus)对乳腺癌亚型进行分类。检测到5种分子亚型,分别为Luminal A、Luminal b样HER2阴性、Luminal b样HER2阳性、HER2阳性和三阴性。资料来源于浸润性乳腺癌患者的回顾性记录。分析分子亚型间临床/病理参数、总生存期和无病生存期的差异。采用Kaplan-Meier法、log-rank检验和Cox回归检验进行组间比较。结果:中位随访时间为48个月。Luminal B-HER2阴性是最常见的类型(26.6%)。分析患者人口统计学、肿瘤特征和生存数据。Luminal A和Luminal B-HER2阴性亚型的总生存率和无病生存率明显更高。多因素Cox分析显示,肿瘤分期、≥3个阳性腋窝淋巴结受累、乳腺癌亚型是影响总生存率和无病生存率的显著因素(p<0.05)。三阴性亚型局部复发和远处转移的相对危险度较高(HR=2.69, 95% CI=1.47;4.95)。结论:乳腺癌亚型对总生存率和无病生存率有显著影响。虽然Luminal A和Luminal B HER2阴性亚型预后较好,但三阴性和HER2-亚型预后较差。
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引用次数: 0
Knowledge and Behavior of Women on Cervical Cancer in the Northern Region of Cameroon 喀麦隆北部地区妇女对子宫颈癌的知识和行为
Pub Date : 2017-09-06 DOI: 10.6000/1927-7229.2017.06.03.1
A. H. N. Kamdje, G. Kalgong, P. T. Kamga, R. S. Tagne, J. M. Amvene, C. Nangue
Background : Cervical cancer is a major cause of women death worldwide. The reduction of the mortality and morbidity of this pathology depends on the early detection based on powerful suitable screening methods, that will lead to optimal treatment strategies. However in some rural region of developing countries, it is very difficult to get access to standard screening methods, alternative screening methods, cheaper and easy to handle are then useful. Objective : The aim of this work was to test the sensitivity and specificity of VIA (Visual inspection with acetic acid) and VILI (Visual inspection with lugol iodine) as a diagnostic test of cervical cancer compared to the Pap Smear, evaluating the feasibility in health formation in the North Cameroon region, of implementing epidemiological surveillance of cervical cancer based on early diagnosis using the VIA-VILI association Method : 309 women age 20 to 62 years were recruited in this study, 307 were included in the statistical analyzes. Each woman was screened for cervical cancer by a conventional Smear and visual inspection with acetic acid 5% and the lugol solution. Results : We found in our study a prevalence of precancerous lesions of cervix at 12.70%. The risks factors of cervical cancer identified are age, matrimonial status, age of first sexual intercourse and parity. The association of VIA and VILI showed a sensitivity, specificity, positive and negative predictive value respectively about 93.58%; 97.01%; 82.01%, 99.04%. Conclusion : Compared to PAP Smear, VIA or VILI could be used as an alternative screening methods for cervical cancer in developing countries, where it is difficult to access to more accurate test such as colposcopy and biopsy.
背景:宫颈癌是全世界妇女死亡的主要原因。这种病理的死亡率和发病率的降低取决于基于强大的筛查方法的早期发现,这将导致最佳的治疗策略。然而,在发展中国家的一些农村地区,很难获得标准的筛查方法,因此更便宜和易于操作的替代筛查方法是有用的。目的:比较醋酸目视检查(VIA)和碘目视检查(VILI)作为宫颈癌诊断检查与巴氏涂片检查的敏感性和特异性,评价在北喀麦隆地区卫生院采用VIA-VILI关联法开展早期诊断基础上的宫颈癌流行病学监测的可行性。本研究共招募年龄在20 ~ 62岁的女性309例,其中307例纳入统计分析。每个妇女都通过常规涂片和5%醋酸和lugol溶液的目视检查来筛查宫颈癌。结果:在我们的研究中,我们发现宫颈癌前病变的患病率为12.70%。宫颈癌的危险因素包括年龄、婚姻状况、第一次性行为年龄和胎次。VIA与VILI相关性的敏感性、特异性、阳性预测值和阴性预测值分别为93.58%;97.01%;82.01%、99.04%。结论:与巴氏涂片相比,在发展中国家,由于阴道镜检查和活检等更准确的检测方法难以获得,VIA或VILI可作为宫颈癌筛查的替代方法。
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引用次数: 2
Prevalence of precancerous lesions among positive HIV women in the hospital complex and University of Yaounde (Cameroun) 雅温得综合医院和大学(喀麦隆)艾滋病毒阳性妇女癌前病变发生率
Pub Date : 2017-04-25 DOI: 10.6000/1927-7229.2017.06.02.3
Dominique Vanessa Sob Djuendje, A. H. N. Kamdje, B. Nkégoum
In the year 2000, a wide campaign of screening and treatment of the dysplastic lesions of the cervix was initiated in Cameroun. The precancerous lesions of the cervix are the most important demonstration of gynecological infection by the AIDS. As these lesions remain little documented in Cameroun, we carried out a study which the goal was to determine the prevalence of the precancerous lesions among positive AIDS women. It is about a descriptive study with a retrospective collection of data carried out between 2010 and 2016 among 253 positive AIDS women having carried out a consultation in the Hospital complex and University of Yaounde aged from 18 to 80 years. The analysis of the data was essentially carried on: the age, clinical Factors data of risk of the precancerous lesions, anatomo-pathological search of precancerous lesion. AIDS status and/or the catch the antiretroviral one. The Software SPSS was used for the analysis of data. The test of Chi2 for the comparison of the variables. A variable was considered significant if P<0,05. 53 women presented precancerous lesions i.e. 20,94%. The lesions were in 92% of the squamous lesions with intra epithelial of low rank and in 8% of the squamous lesions with intra epithelial of high rank. 22 women (38%) were aged between 36 and 45 years; 22 women (40%) were housewives; 18 women (31%) were single people; 36 women (67%) were multipares; 45 women (85%) did not smoke; 33 women (62%) had a peak of CD4 located between 500-1000/mm3;14 women (26%) did not have opportunist diseases 10 women (19%) had the zona, 8 women (15%) of tuberculosis and 9 women (17%) suffered from HTA. Because of the high potential risk of precancerous lesions in our population of study, we recommend a regular clinical follow-up of the patients presenting high factors of risk, and a widened access to antiretroviral.
2000年,喀麦隆开展了一项广泛的筛查和治疗宫颈发育不良病变的运动。宫颈癌前病变是艾滋病感染妇科最重要的表现。由于这些病变在喀麦隆几乎没有记录,我们进行了一项研究,目的是确定艾滋病阳性妇女中癌前病变的患病率。这是一项描述性研究,对2010年至2016年期间在雅温得医院和雅温得大学进行会诊的253名18至80岁艾滋病阳性妇女进行了回顾性数据收集。主要对资料进行分析:年龄、癌前病变危险的临床因素资料、癌前病变的解剖病理搜索。艾滋病状况和/或抗逆转录病毒感染者。采用SPSS软件对数据进行分析。测试用Chi2进行变量的比较。如果P< 0.05,则变量被认为是显著的。53名妇女出现癌前病变,占20.94%。92%的低级别上皮内鳞状病变出现病变,8%的高级别上皮内鳞状病变出现病变。22名女性(38%)年龄在36至45岁之间;22名妇女(40%)是家庭主妇;18名女性(31%)是单身人士;36名女性(67%)为多胎;45名女性(85%)不吸烟;33名妇女(62%)的CD4峰值位于500-1000/mm3之间;14名妇女(26%)没有机会性疾病,10名妇女(19%)患有带状疱疹,8名妇女(15%)患有结核病,9名妇女(17%)患有HTA。由于我们的研究人群中癌前病变的潜在风险很高,我们建议对呈现高风险因素的患者进行定期临床随访,并扩大抗逆转录病毒治疗的范围。
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引用次数: 0
In silico Meta-Analysis of Circulatory microRNAs in Prostate Cancer 前列腺癌中循环小rna的计算机meta分析
Pub Date : 2017-04-25 DOI: 10.6000/1927-7229.2017.06.02.4
A. Singh, Neeti Sharma
Circulatory microRNAs (miRNAs) have emerged as a new class of non coding RNA molecules which regulate many crucial molecular and biological processes. We have aimed to shed light on the roles of circulatory miRNAs in Prostate Cancer (PCa) using an integrative in silico bioinformatics approach. We have described a new protocol for target prediction and functional analysis which was applied to 40 highly differentially dysregulated circulatory miRNAs in PCa. This framework comprises: (i) evidence of involvement of these circulatory miRNAs from previous literature and microarray analysis (ii) overlap of prediction results by target prediction tools, including miRTarBase, miRDB, DIANA- microT 4.0 and TargetScan (combining computational learning, alignment, interaction energy and statistical tests for minimization of false positives), (iii) gene ontology (GO) along with pathway enrichment analysis of the miRNA targets and their pathways and (iv) linking these pathways to oncogenesis and cancer hallmarks. More than 200 target genes and 40 regulatory pathways were retrieved and analysed which was followed by associating their roles with cancer hallmark processes. Wnt signalling, Cell cycle, MAPK signalling, Cadherin signalling, Integrin signalling and Ras pathways were some of the identified regulatory pathways during bioinformatics analysis. These signalling and developmental pathways crosstalk and regulate stem cell renewal thus indicating a definite role of circulatory miRNAs in PCa development. Our study identified miR-181, miR-9, Let-7 family, miR-26b circulatory miRNAs, to be contributing majorly in the oncogenic pathways, thus proposing their role as potential biomarkers in PCa initiation and progression.
循环microRNAs (Circulatory microRNAs, miRNAs)是一类新兴的非编码RNA分子,它调控着许多重要的分子和生物学过程。我们的目的是利用集成的硅生物信息学方法阐明循环mirna在前列腺癌(PCa)中的作用。我们描述了一种新的靶标预测和功能分析方案,该方案应用于PCa中40种高度差异失调的循环mirna。这个框架包括:(i)来自先前文献和微阵列分析的这些循环mirna参与的证据;(ii)目标预测工具的预测结果重叠,包括miRTarBase、miRDB、DIANA- microt4.0和TargetScan(结合计算学习、比对、相互作用能和统计测试,以最大限度地减少假阳性);(iii)基因本体论(GO)以及miRNA靶点及其途径的途径富集分析;(iv)将这些途径与肿瘤发生和癌症标志联系起来。超过200个靶基因和40个调控途径被检索和分析,随后将它们的作用与癌症标志过程联系起来。Wnt信号通路、细胞周期、MAPK信号通路、Cadherin信号通路、Integrin信号通路和Ras信号通路是生物信息学分析中发现的一些调控通路。这些信号传导和发育途径相互作用并调节干细胞更新,从而表明循环mirna在PCa发展中的明确作用。我们的研究发现miR-181, miR-9, Let-7家族,miR-26b循环mirna,在癌变途径中起主要作用,因此提出它们在PCa的发生和发展中作为潜在的生物标志物的作用。
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引用次数: 1
Breast Cancer Treatment Protocols: Systematic Review of the Last 35 Years 乳腺癌治疗方案:近35年的系统回顾
Pub Date : 2017-04-25 DOI: 10.6000/1927-7229.2017.06.02.2
R. Santos-Oliveira, Thaís Ligiéro Braga, Filipe Leal Portilho
Breast cancer is the main leading type of cancer for women around the world and is responsible for 522,000 deaths per year worldwide. In order to reduce this number, clinicians and researchers are always looking for new strategies and protocols. However, the treatment for breast cancer is challenging and requires as much information as possible. To this end, we conducted a review of all protocols used for breast cancer treatment in the last 35 years with the objective to help clinicians to choose the best treatment possible available in their region. Many of the protocols are international references, and for that reason have been used in many countries like USA and Europe. The data, depicted in tables, may be helpful for clinicians worldwide and researchers to better understand the evolution of breast cancer protocols such as helping make daily routine decisions.
乳腺癌是世界各地妇女的主要癌症类型,每年在全世界造成52.2万人死亡。为了减少这一数字,临床医生和研究人员一直在寻找新的策略和方案。然而,乳腺癌的治疗是具有挑战性的,需要尽可能多的信息。为此,我们对过去35年来用于乳腺癌治疗的所有方案进行了回顾,目的是帮助临床医生在他们的地区选择可能可行的最佳治疗方案。许多协议都是国际参考,因此在美国和欧洲等许多国家都被使用。表格中描述的数据可能有助于世界各地的临床医生和研究人员更好地了解乳腺癌方案的演变,例如帮助制定日常决策。
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引用次数: 1
Differences between 66 Chemical Element Contents in Normal and Cancerous Prostate 正常前列腺与癌前列腺中66种化学元素含量的差异
Pub Date : 2017-04-25 DOI: 10.6000/1927-7229.2017.06.02.1
V. Zaichick
Prostate cancer is an internationally important health problem in man, particularly in developed countries. The aim of this exploratory study was to clarify the differences between the prostatic levels of chemical elements in patients with malignantly transformed prostate (PCa) and healthy male inhabitance. Prostatic tissue levels of 66 chemical elements were prospectively evaluated in 60 patients with PCa and 37 healthy males. Measurements were performed using a combination of five non-destructive and destructive analytical methods. A significant increase in the mean level of Ag, Al, Au, B, Ba, Be, Bi, Br, Ce, Cr, Cu, Dy, Er, Fe, Gd, Hg, Ho, Li, Mn, Nd, Ni, Pr, Sb, Si, Sm, Sn, Sr, Tb, Th, Ti, Tl, Tm, Y and Zr accompanied a decrease in the mean level of Ca, Cd, Co, K, Mg, Na, P, Rb, S, Sc, Se, and Zn was observed in the cancerous prostates. It was not found any differences in the mean prostatic level of other chemical elements including Cs, La, Mo, Nb, P, Pb, U, and Yb between PCa patients and healthy males. This work’s results reveal that in malignantly transformed prostate the chemical element metabolism is drastically disturbed.
前列腺癌是国际上重要的男性健康问题,特别是在发达国家。本探索性研究的目的是阐明前列腺恶性转化(PCa)患者与健康男性前列腺中化学元素水平的差异。前瞻性评估60例前列腺癌患者和37例健康男性前列腺组织中66种化学元素的水平。测量使用五种非破坏性和破坏性分析方法的组合进行。前列腺癌组织中Ag、Al、Au、B、Ba、Be、Bi、Br、Ce、Cr、Cu、Dy、Er、Fe、Gd、Hg、Ho、Li、Mn、Nd、Ni、Pr、Sb、Si、Sm、Sn、Sr、Tb、Th、Ti、Tl、Tm、Y、Zr的平均水平显著升高,Ca、Cd、Co、K、Mg、Na、P、Rb、S、Sc、Se、Zn的平均水平显著降低。其他化学元素Cs、La、Mo、Nb、P、Pb、U、Yb的平均前列腺水平在前列腺癌患者与健康男性之间无差异。这项工作的结果表明,在恶性转化前列腺的化学元素代谢急剧紊乱。
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引用次数: 20
Prevalence of Malnutrition among Cancer Patients in a Nigerian Institution 尼日利亚一家机构中癌症患者营养不良的发生率
Pub Date : 2017-04-25 DOI: 10.6000/1927-7229.2017.06.02.5
A. Ntekim, O. Folasire, A. Folasire
Background : Cancer is a major health problem. Successful management includes adequate supportive care. Nutritional problems are common among cancer patients and these are not routinely addressed by oncologists during oncology care leading to suboptimal outcome even in developed countries. In Nigeria and other low and medium income countries, the situation is worse as nutritional screening and assessment of cancer patients are not routinely carried out. Objectives : To determine the proportion of cancer patients at risk of malnutrition and compare convergence of risk assessment using SGA and MUST tools. Methods : This was a prospective study carried out among cancer patients who presented for cancer care in the Department of Radiation Oncology, University College Hospital Ibadan, Nigeria. Nutritional assessment tools which included Malnutrition Universal Scoring Tool (MUST) and Subjective Global Assessment (SGA) were used to assess the nutritional status of the participants. Results : A total of 89 patients aged between 18 and 85 years participated in the study. The number of males were 13 (15%) while females were 76(85%). In our study 54 (60.8%) of our patients were at risk of malnutrition using the malnutrition universal scoring tool (MUST) scale while 53(60%) were malnourished using the subjective global assessment (SGA) scale. The reliability for the classifications using the MUST and SGA scales was positive (moderate) [Kappa = 0.584 (p<0.0005), 95% CI (0.410, 0.758)]. Conclusion : There is a high proportion of clinical malnutrition among cancer patients in the study population. According to this study, there was similarity between the classifications of nutritional risk, using the MUST and SGA tools.
背景:癌症是一个主要的健康问题。成功的管理包括充分的支持性护理。营养问题在癌症患者中很常见,即使在发达国家,肿瘤医生在肿瘤治疗过程中也没有常规地解决这些问题,导致结果不理想。在尼日利亚和其他低收入和中等收入国家,情况更糟,因为没有对癌症患者进行常规的营养筛查和评估。目的:确定有营养不良风险的癌症患者的比例,并比较使用SGA和MUST工具进行风险评估的收敛性。方法:这是一项前瞻性研究,在尼日利亚伊巴丹大学学院医院放射肿瘤科接受癌症治疗的癌症患者中进行。营养评估工具包括营养不良通用评分工具(MUST)和主观整体评估(SGA)来评估参与者的营养状况。结果:共有89例患者参与研究,年龄在18 ~ 85岁之间。男性13人(15%),女性76人(85%)。在我们的研究中,使用营养不良通用评分工具(MUST)量表,54例(60.8%)患者存在营养不良风险,而使用主观整体评估(SGA)量表,53例(60%)患者存在营养不良风险。使用MUST和SGA量表进行分类的信度为正(中等)[Kappa = 0.584 (p<0.0005), 95% CI(0.410, 0.758)]。结论:研究人群中肿瘤患者临床营养不良比例较高。根据本研究,使用MUST和SGA工具进行营养风险分类之间存在相似性。
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引用次数: 0
Brachytherapy in Head and Neck Cancer: A Forgotten Art or a Skill to be Remembered!! 近距离治疗头颈癌:被遗忘的艺术还是被记住的技能!!
Pub Date : 2017-01-26 DOI: 10.6000/1927-7229.2017.06.01.3
A. S. K. Koushik, R. Alva
Radiation therapy is a critical part of multi-modality management of head and neck cancers. Brachytherapy or internal radiation is an ideal method of treatment delivery to achieve the ultimate goal of radiation treatment, that is maximum dose to tumour and minimum dose to normal tissues. Brachytherapy enables the radiation oncologist to provide a perfect mixture of radiation physics, radiobiology and clinical acumen to counter head and neck cancers. Appropriate usage based on the clearly defined indications and simple methods can maximize the advantages of brachytherapy thus resulting in excellent outcomes. However, the steady decline in utilization of brachytherapy over the years coupled with the technological advances of highly conformal radiotherapy, have dented its broader application for head and neck cancers. Can the new age radiation oncologist afford to neglect this therapeutic skill set?
放射治疗是头颈部肿瘤多模式治疗的重要组成部分。近距离放射治疗或内部放射是一种理想的治疗递送方法,以达到放射治疗的最终目标,即对肿瘤的最大剂量和对正常组织的最小剂量。近距离放射治疗使放射肿瘤学家能够提供放射物理学、放射生物学和临床敏锐性的完美结合,以对抗头颈部癌症。根据明确的适应症和简单的方法适当使用,可以最大限度地发挥近距离治疗的优势,从而获得良好的效果。然而,近年来近距离放疗的应用稳步下降,加上高适形放射治疗的技术进步,已经削弱了其在头颈部癌症中的广泛应用。新时代的放射肿瘤学家能忽视这种治疗技能吗?
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引用次数: 1
Comparison of Analytical Characteristics of Commercial and in-House Methods for DNA Isolation from Paraffin Histology Blocks 从石蜡组织块中分离DNA的商业和内部方法的分析特性比较
Pub Date : 2017-01-26 DOI: 10.6000/1927-7229.2017.06.01.1
N. A. Os’kina, A. Avdalyan, D. Subbotin, A. Lazarev, A. Kel, N. Kushlinskii, M. Filipenko
One of the hotspots in clinical research today is molecular genetic analysis of structural DNA alterations. Working with DNA obtained from formalin-fixed and paraffin-embedded (FFPE) tissue specimens is particularly challenging, due to cross-linking and fragmentation of DNA. We performed a comparative analysis of DNA extraction methods from FFPE tissue using two in-house protocols and Qiagen (QIAamp DNA FFPE Tissue Kit) and Roche (High Pure FFPET DNA Isolation Kit) commercial kits presented in the Russian market and used in clinical practice. To assess the quantity and quality of the isolated DNA, we used the real-time PCR to rate DNA yield, the inhibited impurity content and the degree of fragmentation. Our findings may be useful for a medical laboratory that performs testing of somatic mutations for the targeted therapy selection, and researchers who specialized in tumor genome structure studies in respect to patient prognosis and prediction of the sensitivity or resistance of tumor cells to therapy.
DNA结构改变的分子遗传学分析是当今临床研究的热点之一。由于DNA的交联和断裂,使用从福尔马林固定和石蜡包埋(FFPE)组织标本中获得的DNA尤其具有挑战性。我们使用两种内部方案和Qiagen (QIAamp DNA FFPE组织试剂盒)和Roche(高纯FFPET DNA分离试剂盒)在俄罗斯市场上推出并用于临床实践的商用试剂盒,对FFPE组织的DNA提取方法进行了比较分析。为了评估分离DNA的数量和质量,我们使用real-time PCR对DNA产率、抑制杂质含量和片段化程度进行评分。我们的发现可能对医学实验室进行体细胞突变测试以进行靶向治疗选择,以及专门从事肿瘤基因组结构研究的研究人员在患者预后和肿瘤细胞对治疗的敏感性或耐药性预测方面有用。
{"title":"Comparison of Analytical Characteristics of Commercial and in-House Methods for DNA Isolation from Paraffin Histology Blocks","authors":"N. A. Os’kina, A. Avdalyan, D. Subbotin, A. Lazarev, A. Kel, N. Kushlinskii, M. Filipenko","doi":"10.6000/1927-7229.2017.06.01.1","DOIUrl":"https://doi.org/10.6000/1927-7229.2017.06.01.1","url":null,"abstract":"One of the hotspots in clinical research today is molecular genetic analysis of structural DNA alterations. Working with DNA obtained from formalin-fixed and paraffin-embedded (FFPE) tissue specimens is particularly challenging, due to cross-linking and fragmentation of DNA. We performed a comparative analysis of DNA extraction methods from FFPE tissue using two in-house protocols and Qiagen (QIAamp DNA FFPE Tissue Kit) and Roche (High Pure FFPET DNA Isolation Kit) commercial kits presented in the Russian market and used in clinical practice. To assess the quantity and quality of the isolated DNA, we used the real-time PCR to rate DNA yield, the inhibited impurity content and the degree of fragmentation. Our findings may be useful for a medical laboratory that performs testing of somatic mutations for the targeted therapy selection, and researchers who specialized in tumor genome structure studies in respect to patient prognosis and prediction of the sensitivity or resistance of tumor cells to therapy.","PeriodicalId":14957,"journal":{"name":"Journal of Analytical Oncology","volume":"69 1","pages":"1-6"},"PeriodicalIF":0.0,"publicationDate":"2017-01-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89306161","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Journal of Analytical Oncology
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