首页 > 最新文献

Journal of Cancer Prevention & Current Research最新文献

英文 中文
Testicular liposarcoma: a rare form of testicular cancer 睾丸脂肪肉瘤:一种罕见的睾丸癌
Pub Date : 2020-06-05 DOI: 10.15406/JCPCR.2020.11.00428
Chintav Shah, Simeon Jaggenauth, Patrick Pathappillil, Risha Sinha
Testicular liposarcoma is a very uncommon pathology associated with testicular cancer. 1 Paratesticular soft tissue tumors are rare entities with malignant subtypes accounting for 30% of cases. 2 Often misdiagnosed, testicular liposarcoma must be considered in the differential diagnosis of a groin mass. 1 There are only few cases of the giant testicular liposarcoma of more than 10cm reported in the literature. We present the case of a 62yr old male who presented to urology for a mass in the groin which was thought to be an inguinal hernia. The patient had some associated testicular pain therefore an ultrasound was performed identifying a 7.1 x 1.5cm mass. He underwent a left orchiectomy with removal of the associated mass which showed a well differentiated liposarcoma of a sclerosing variant. The surgical margins were negative however; the patient did undergo a metastatic workup with a CT of abdomen and pelvis that was unremarkable.
摘要睾丸脂肪肉瘤是一种罕见的与睾丸癌相关的病理。1睾丸旁软组织肿瘤是罕见的肿瘤,恶性亚型约占30%。睾丸脂肪肉瘤常被误诊,在鉴别诊断腹股沟肿块时必须加以考虑。1文献报道的大于10cm的巨大睾丸脂肪肉瘤病例很少。我们提出的情况下,62岁的男性谁提出了一个肿块在腹股沟泌尿科认为是腹股沟疝。患者伴有睾丸疼痛,因此超声检查发现7.1 x 1.5cm肿块。他接受了左睾丸切除术,切除了相关肿块,结果显示为分化良好的硬化型脂肪肉瘤。然而,手术切缘为阴性;患者确实接受了腹部和骨盆的CT检查,但没有明显的转移。
{"title":"Testicular liposarcoma: a rare form of testicular cancer","authors":"Chintav Shah, Simeon Jaggenauth, Patrick Pathappillil, Risha Sinha","doi":"10.15406/JCPCR.2020.11.00428","DOIUrl":"https://doi.org/10.15406/JCPCR.2020.11.00428","url":null,"abstract":"Testicular liposarcoma is a very uncommon pathology associated with testicular cancer. 1 Paratesticular soft tissue tumors are rare entities with malignant subtypes accounting for 30% of cases. 2 Often misdiagnosed, testicular liposarcoma must be considered in the differential diagnosis of a groin mass. 1 There are only few cases of the giant testicular liposarcoma of more than 10cm reported in the literature. We present the case of a 62yr old male who presented to urology for a mass in the groin which was thought to be an inguinal hernia. The patient had some associated testicular pain therefore an ultrasound was performed identifying a 7.1 x 1.5cm mass. He underwent a left orchiectomy with removal of the associated mass which showed a well differentiated liposarcoma of a sclerosing variant. The surgical margins were negative however; the patient did undergo a metastatic workup with a CT of abdomen and pelvis that was unremarkable.","PeriodicalId":15185,"journal":{"name":"Journal of Cancer Prevention & Current Research","volume":"12 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86042578","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Thyroid, uncommon metastatic site for renal cell carcinoma – practical challenges 甲状腺,罕见的肾细胞癌转移部位-实际的挑战
Pub Date : 2020-05-23 DOI: 10.15406/JCPCR.2020.11.00430
R. Pintican, M. Mureşan, A. Chiorean, V. Bintintan, V. Bura, M. Duma
Renal cell carcinoma (RCC) is notorious for its uncommon metastatic location. We present a rare case of goiter as a RCC metastatic site. As case particularities, besides the goiter that made practically impossible the ultrasound diagnosis of the metastasis, this seemed to be correlated with an unexplained high level of alkaline phosphatase (AP). AP persisted from the time of kidney cancer diagnosis, after nephrectomy and reached a normal value only after thyroidectomy. Currently, there are no guidelines to indicate FDG-PET in RCC patients. Thereby, we will present the challenging ultrasound diagnosis together with case management particularities.
肾细胞癌(RCC)因其罕见的转移部位而臭名昭著。我们提出一个罕见的病例甲状腺肿作为一个转移部位的肾细胞癌。作为病例的特殊性,除了甲状腺肿大使得超声诊断几乎不可能转移外,这似乎与无法解释的高水平碱性磷酸酶(AP)有关。AP从肾癌诊断到肾切除术后持续存在,仅在甲状腺切除术后才达到正常值。目前,对于RCC患者,尚无FDG-PET的指导方针。因此,我们将提出具有挑战性的超声诊断与病例管理的特殊性。
{"title":"Thyroid, uncommon metastatic site for renal cell carcinoma – practical challenges","authors":"R. Pintican, M. Mureşan, A. Chiorean, V. Bintintan, V. Bura, M. Duma","doi":"10.15406/JCPCR.2020.11.00430","DOIUrl":"https://doi.org/10.15406/JCPCR.2020.11.00430","url":null,"abstract":"Renal cell carcinoma (RCC) is notorious for its uncommon metastatic location. We present a rare case of goiter as a RCC metastatic site. As case particularities, besides the goiter that made practically impossible the ultrasound diagnosis of the metastasis, this seemed to be correlated with an unexplained high level of alkaline phosphatase (AP). AP persisted from the time of kidney cancer diagnosis, after nephrectomy and reached a normal value only after thyroidectomy. Currently, there are no guidelines to indicate FDG-PET in RCC patients. Thereby, we will present the challenging ultrasound diagnosis together with case management particularities.","PeriodicalId":15185,"journal":{"name":"Journal of Cancer Prevention & Current Research","volume":"133 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"79356590","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The burden of cancer cases attributable to tobacco in India: case of Kerala and Bihar states 印度烟草引起的癌症病例负担:喀拉拉邦和比哈尔邦的案例
Pub Date : 2020-05-19 DOI: 10.15406/JCPCR.2020.11.00427
J. Prasad, Arvind Kumar, Rajeshwari A. Biradar
Background: For effective planning and administrative purpose, a precise estimate of burden due to tobacco and projection figure is essential. There were some studies in India, reporting tobacco-related cancers. However, there is no observable study in India, especially for these backward and forward state, attempting to assess cancers due to tobacco for measuring the geographical variations. Hence, this study tried to highlights geographic variation between one from developed state is as Kerala, and another one is from not so well-developed state as Bihar in India. Materials and methods: Tobacco prevalence, the relative risk of cancer due to tobacco, incidence rates of tobacco-related cancers, and population were obtained respectively from recent five rounds of Nation Sample Survey, our recently published study, reports of Population-Based Cancer Registries, and projections of Registrar General of India. Prasad and Dhar published generalised Population Attributable Risk method (2018) was used to assess cancer due to tobacco and regression method for prediction. Results: The burden of cancer cases due to tobacco was found highest in the state of Bihar (23,679), while in Kerala, it was 5,981 in the year 2015 and increased to 42,244 and 6,646 by 2025 in Bihar and Kerala respectively. Lung cancer is the leading cancer sites followed by mouth and tongue cancers. In Kerala, the proportion of smoking is found to be high and lead to the higher proportions of larynx cancers (61percent) followed by oropharynx (59 percent) and lung cancer (58 percent) and are likely to increase from 2015 to 2025 slightly. In Bihar, around three fourth of mouth cancers cases being due to chewing followed by oesophagus (59 percent), tongue (54 percent) and so on. Conclusion: Present study reports the absolute burden of cancer due to tobacco, Tobacco- Related Cancer as well as a percent change of it for Kerala and Bihar till 2025. It might be helpful to policy planners and administrators in decision making relating to anti-tobacco measures.
背景:为了有效的规划和管理目的,准确估计烟草负担和预测数字是必不可少的。印度有一些研究报告了与烟草有关的癌症。然而,在印度,特别是在这些落后和发达的州,没有可观察到的研究,试图评估烟草引起的癌症,以衡量地理差异。因此,这项研究试图强调地理差异,一个来自发达邦,如喀拉拉邦,另一个来自不那么发达的邦,如印度的比哈尔邦。材料和方法:分别从最近五轮国家抽样调查、我们最近发表的研究、基于人口的癌症登记报告和印度登记总干事的预测中获得烟草流行率、烟草引起的癌症的相对风险、烟草相关癌症的发病率和人口。Prasad和Dhar发表的广义人口归因风险方法(2018年)用于评估烟草引起的癌症,并使用回归方法进行预测。结果:由烟草引起的癌症病例负担在比哈尔邦最高(23,679),而在喀拉拉邦,2015年为5,981,到2025年,比哈尔邦和喀拉拉邦分别增加到42,244和6,646。肺癌是主要的癌症部位,其次是口腔癌和舌癌。在喀拉拉邦,吸烟的比例很高,导致喉癌的比例较高(61%),其次是口咽癌(59%)和肺癌(58%),从2015年到2025年可能会略有增加。在比哈尔邦,大约四分之三的口腔癌病例是由咀嚼引起的,其次是食道癌(59%)、舌癌(54%)等。结论:本研究报告了喀拉拉邦和比哈尔邦到2025年因烟草和烟草相关癌症造成的绝对癌症负担,以及其百分比变化。这可能有助于政策规划者和行政人员制定有关禁烟措施的决策。
{"title":"The burden of cancer cases attributable to tobacco in India: case of Kerala and Bihar states","authors":"J. Prasad, Arvind Kumar, Rajeshwari A. Biradar","doi":"10.15406/JCPCR.2020.11.00427","DOIUrl":"https://doi.org/10.15406/JCPCR.2020.11.00427","url":null,"abstract":"Background: For effective planning and administrative purpose, a precise estimate of burden due to tobacco and projection figure is essential. There were some studies in India, reporting tobacco-related cancers. However, there is no observable study in India, especially for these backward and forward state, attempting to assess cancers due to tobacco for measuring the geographical variations. Hence, this study tried to highlights geographic variation between one from developed state is as Kerala, and another one is from not so well-developed state as Bihar in India. Materials and methods: Tobacco prevalence, the relative risk of cancer due to tobacco, incidence rates of tobacco-related cancers, and population were obtained respectively from recent five rounds of Nation Sample Survey, our recently published study, reports of Population-Based Cancer Registries, and projections of Registrar General of India. Prasad and Dhar published generalised Population Attributable Risk method (2018) was used to assess cancer due to tobacco and regression method for prediction. Results: The burden of cancer cases due to tobacco was found highest in the state of Bihar (23,679), while in Kerala, it was 5,981 in the year 2015 and increased to 42,244 and 6,646 by 2025 in Bihar and Kerala respectively. Lung cancer is the leading cancer sites followed by mouth and tongue cancers. In Kerala, the proportion of smoking is found to be high and lead to the higher proportions of larynx cancers (61percent) followed by oropharynx (59 percent) and lung cancer (58 percent) and are likely to increase from 2015 to 2025 slightly. In Bihar, around three fourth of mouth cancers cases being due to chewing followed by oesophagus (59 percent), tongue (54 percent) and so on. Conclusion: Present study reports the absolute burden of cancer due to tobacco, Tobacco- Related Cancer as well as a percent change of it for Kerala and Bihar till 2025. It might be helpful to policy planners and administrators in decision making relating to anti-tobacco measures.","PeriodicalId":15185,"journal":{"name":"Journal of Cancer Prevention & Current Research","volume":"17 4","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-05-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"91474734","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Is BHCG a good tumor marker for aggressive uterine leiomyosarcoma? case report BHCG是侵袭性子宫平滑肌肉瘤的良好肿瘤标志物吗?病例报告
Pub Date : 2020-04-30 DOI: 10.15406/JCPCR.2020.11.00426
Sarah Alrubaish, M. Renaud
An elevation of BHCG has been documented only in rare case reports of mesenchymal tumors, however, it is usually found to be high in germ cell tumors. 1 BHCG production in patients with mesenchymal tumors has been discussed as a paraneoplastic phenomenon as well as associated with bad prognoses. 2,3
BHCG的升高仅在间质肿瘤的罕见病例报告中被记录,然而,它通常在生殖细胞肿瘤中被发现是高的。1间充质肿瘤患者BHCG的产生被认为是一种副肿瘤现象,并与不良预后相关。2,3
{"title":"Is BHCG a good tumor marker for aggressive uterine leiomyosarcoma? case report","authors":"Sarah Alrubaish, M. Renaud","doi":"10.15406/JCPCR.2020.11.00426","DOIUrl":"https://doi.org/10.15406/JCPCR.2020.11.00426","url":null,"abstract":"An elevation of BHCG has been documented only in rare case reports of mesenchymal tumors, however, it is usually found to be high in germ cell tumors. 1 BHCG production in patients with mesenchymal tumors has been discussed as a paraneoplastic phenomenon as well as associated with bad prognoses. 2,3","PeriodicalId":15185,"journal":{"name":"Journal of Cancer Prevention & Current Research","volume":"248 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82900633","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Small cell lung cancer: a Moroccan retrospective study of 70 cases 小细胞肺癌:摩洛哥70例回顾性研究
Pub Date : 2020-04-21 DOI: 10.15406/JCPCR.2020.11.00425
I. Ahalli, K. Messoudi, Raihana Boujarnija, K. Darif, L. Amaadour, K. Oualla, Z. Benbrahim, Samia Arif, N. Mellas
Background: Lung cancer is the main cause of cancer-related death worldwide. Small cell lung cancer (SCLC) represents 15-20% of all lung cancers, it is an aggressive neoplasia, with a 5-year mortality of 90% or more. The aim of this study was to evaluate the epidemiological and clinical features, treatment outcome and survival for patients with SCLC treated in medical oncology department during the period from 2010 to 2018. Material and methods: It is a retrospective study including Small cell lung cancer (SCLC) treated in the department of Medical Oncology at Hassan II University hospital in Fes, from January 2010 to December 2018. Collection of data was obtained through computerized records of patients. The survival was analyzed by the Kaplan-Meier method. Results: The mean age was 59 years. Almost all patients were current smokers. The most frequent symptoms on admission were dyspnea, chest pain and hemoptysis. The stages of SCLC were limited disease in 17 (24,3%) and extensive disease in 53 (75,7%) patients. Contra lateral lung was the most common site of metastasis (42.6%) followed by adrenal gland, brain, liver and bone. The median survival was 25.2, 17.2 and 21.3 months for LS, ES and overall patients, respectively. Conclusion: In conclusion, demographic and clinical features of the patients were similar with the literature. We found a better survival than reported in literature.
背景:肺癌是世界范围内癌症相关死亡的主要原因。小细胞肺癌(SCLC)占所有肺癌的15-20%,是一种侵袭性肿瘤,5年死亡率为90%或以上。本研究的目的是评估2010 - 2018年在内科肿瘤科治疗的SCLC患者的流行病学和临床特征、治疗结果和生存率。材料和方法:这是一项回顾性研究,包括2010年1月至2018年12月在费斯哈桑二世大学医院肿瘤内科治疗的小细胞肺癌(SCLC)。收集的数据是通过患者的计算机记录获得的。采用Kaplan-Meier法分析生存率。结果:患者平均年龄59岁。几乎所有患者目前都是吸烟者。入院时最常见的症状是呼吸困难、胸痛和咯血。SCLC分期为局限性病变17例(24.3%),广泛性病变53例(75.7%)。对侧肺是最常见的转移部位(42.6%),其次是肾上腺、脑、肝和骨。LS、ES和整体患者的中位生存期分别为25.2、17.2和21.3个月。结论:患者的人口学特征和临床特征与文献相似。我们发现存活率比文献报道的要高。
{"title":"Small cell lung cancer: a Moroccan retrospective study of 70 cases","authors":"I. Ahalli, K. Messoudi, Raihana Boujarnija, K. Darif, L. Amaadour, K. Oualla, Z. Benbrahim, Samia Arif, N. Mellas","doi":"10.15406/JCPCR.2020.11.00425","DOIUrl":"https://doi.org/10.15406/JCPCR.2020.11.00425","url":null,"abstract":"Background: Lung cancer is the main cause of cancer-related death worldwide. Small cell lung cancer (SCLC) represents 15-20% of all lung cancers, it is an aggressive neoplasia, with a 5-year mortality of 90% or more. The aim of this study was to evaluate the epidemiological and clinical features, treatment outcome and survival for patients with SCLC treated in medical oncology department during the period from 2010 to 2018. Material and methods: It is a retrospective study including Small cell lung cancer (SCLC) treated in the department of Medical Oncology at Hassan II University hospital in Fes, from January 2010 to December 2018. Collection of data was obtained through computerized records of patients. The survival was analyzed by the Kaplan-Meier method. Results: The mean age was 59 years. Almost all patients were current smokers. The most frequent symptoms on admission were dyspnea, chest pain and hemoptysis. The stages of SCLC were limited disease in 17 (24,3%) and extensive disease in 53 (75,7%) patients. Contra lateral lung was the most common site of metastasis (42.6%) followed by adrenal gland, brain, liver and bone. The median survival was 25.2, 17.2 and 21.3 months for LS, ES and overall patients, respectively. Conclusion: In conclusion, demographic and clinical features of the patients were similar with the literature. We found a better survival than reported in literature.","PeriodicalId":15185,"journal":{"name":"Journal of Cancer Prevention & Current Research","volume":"9 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72595548","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An application of matrix eQTL to billions hypothesis testing to identify expression quantitative trait loci in genome wide association studies of inflammatory bowel disease 在炎症性肠病全基因组关联研究中,应用矩阵eQTL进行数十亿假设检验以鉴定表达数量性状位点
Pub Date : 2020-04-16 DOI: 10.15406/JCPCR.2020.11.00424
Fahimeh Moradi, Morteza Hajihosseini, Elham Khodayari-Moez, I. Dinu
Introduction: Genome wide association studies (GWAS) have been widely used in recent years to identify new information on genetic variants which are associated with complex trait in many diseases. Advances in identifying the Single Nucleotide Polymorphisms (SNPs) facilitate the study of etiologies of common disorders including cancers, inflammatory bowel diseases (IBD) and colorectal cancer. Variations in gene expression demonstrate that transcript levels of many RNAs behave as heritable quantitative traits. Studying the genetics of gene expression can provide additional power to the roles of GWAS variants. Expression quantitative trait loci (eQTL) mapping links the genome-wide SNPs with RNA expression. Methods: In this study, we performed expression quantitative trait loci (eQTL) analysis using the Matrix eQTL R package. This technique implements matrix covariance calculation and efficiently runs ANOVA and linear regression analysis for eQTL studies. The statistical test determines the association between SNP and gene expression, where the null hypothesis is no association between genotype and phenotypes. False Discovery Rate (FDR) is used to identify significant cis and trans eQTL and adjust for multiple hypothesis testing. Results: We applied matrix eQTL to a real data set consisting of 730,256 SNP and 33,298 RNA for 173 samples. SNPs with minor allele frequency (MAF) less than 0.05 and those violating the Hardy_Weinberg equilibrium (HWE), were excluded from the study. In this study, 15,408 cis eQTL and 27,562 trans eQTL are identified at a FDR less than 0.05, corresponding to p value thresholds of 8e-5 and 1e-8, respectively. Conclusion: We found out that matrix eQTL is a computationally efficient and user friendly method for analysis of eQTL studies. Our application provides insight into the genomic architecture of gene regulation in inflammatory bowel disease (IBD).
近年来,基因组全关联研究(Genome wide association studies, GWAS)被广泛用于识别与许多疾病复杂性状相关的遗传变异的新信息。单核苷酸多态性(snp)鉴定的进展促进了癌症、炎症性肠病(IBD)和结直肠癌等常见疾病病因的研究。基因表达的变化表明,许多rna的转录水平表现为可遗传的数量性状。研究基因表达的遗传学可以为GWAS变体的作用提供额外的动力。表达数量性状位点(eQTL)定位将全基因组snp与RNA表达联系起来。方法:本研究使用Matrix eQTL R包进行表达数量性状位点(eQTL)分析。该技术实现了矩阵协方差计算,并有效地对eQTL研究进行方差分析和线性回归分析。统计检验确定SNP和基因表达之间的关联,其中零假设是基因型和表型之间没有关联。错误发现率(FDR)用于识别显著的顺式和反式eQTL,并对多假设检验进行调整。结果:我们将矩阵eQTL应用于173个样本的真实数据集,该数据集包含730,256个SNP和33,298个RNA。次要等位基因频率(MAF)小于0.05和违反Hardy_Weinberg平衡(HWE)的snp被排除在研究之外。本研究共鉴定出15408个顺式eQTL和27562个反式eQTL, FDR小于0.05,分别对应于p值阈值8e-5和1e-8。结论:矩阵eQTL是一种计算效率高、易于使用的eQTL分析方法。我们的应用程序为炎症性肠病(IBD)基因调控的基因组结构提供了见解。
{"title":"An application of matrix eQTL to billions hypothesis testing to identify expression quantitative trait loci in genome wide association studies of inflammatory bowel disease","authors":"Fahimeh Moradi, Morteza Hajihosseini, Elham Khodayari-Moez, I. Dinu","doi":"10.15406/JCPCR.2020.11.00424","DOIUrl":"https://doi.org/10.15406/JCPCR.2020.11.00424","url":null,"abstract":"Introduction: Genome wide association studies (GWAS) have been widely used in recent years to identify new information on genetic variants which are associated with complex trait in many diseases. Advances in identifying the Single Nucleotide Polymorphisms (SNPs) facilitate the study of etiologies of common disorders including cancers, inflammatory bowel diseases (IBD) and colorectal cancer. Variations in gene expression demonstrate that transcript levels of many RNAs behave as heritable quantitative traits. Studying the genetics of gene expression can provide additional power to the roles of GWAS variants. Expression quantitative trait loci (eQTL) mapping links the genome-wide SNPs with RNA expression. Methods: In this study, we performed expression quantitative trait loci (eQTL) analysis using the Matrix eQTL R package. This technique implements matrix covariance calculation and efficiently runs ANOVA and linear regression analysis for eQTL studies. The statistical test determines the association between SNP and gene expression, where the null hypothesis is no association between genotype and phenotypes. False Discovery Rate (FDR) is used to identify significant cis and trans eQTL and adjust for multiple hypothesis testing. Results: We applied matrix eQTL to a real data set consisting of 730,256 SNP and 33,298 RNA for 173 samples. SNPs with minor allele frequency (MAF) less than 0.05 and those violating the Hardy_Weinberg equilibrium (HWE), were excluded from the study. In this study, 15,408 cis eQTL and 27,562 trans eQTL are identified at a FDR less than 0.05, corresponding to p value thresholds of 8e-5 and 1e-8, respectively. Conclusion: We found out that matrix eQTL is a computationally efficient and user friendly method for analysis of eQTL studies. Our application provides insight into the genomic architecture of gene regulation in inflammatory bowel disease (IBD).","PeriodicalId":15185,"journal":{"name":"Journal of Cancer Prevention & Current Research","volume":"25 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-04-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90417924","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Retroperitoneal liposarcoma: an unusual case of weight gain despite weight loss measures 腹膜后脂肪肉瘤:一个不寻常的病例体重增加,尽管减肥措施
Pub Date : 2020-04-15 DOI: 10.15406/JCPCR.2020.11.00423
Chintav Shah, S. Jaggernauth, V. A. Ayapati, B. o'Brian
Retroperitoneal liposarcomas are a heterogenous group of mesenchymal tumors that have a wide spectrum of histological subtypes and vague clinical presentation. 1 They are locally invasive and the peak incidence is in the 5th decade. 2 They account for 0.1-0.2% of all solid tumors and 15% of all soft-tissue tumors. 2 Liposarcomas are usually large and occur most frequently in the lower extremities, in the retroperitoneal, perineal and mesenteric region. 2 In the retroperitoneum, they grow without symptoms due to the ability of the abdominal cavity to accommodate these slowly expanding masses. 2 We present the case of 72yr old male who presented to urology and oncology due to the diagnosis of igh grade Gleason 9 prostate adenocarcinoma and a history of Agent Orange exposure. In the process of his workup, he complained of feeling full and gaining weight gain despite his best efforts at dieting and weight loss. Due to his abdominal distention, a CT scan of the abdomen and pelvis was performed which demonstrated 2 large fat containing intra abdominal masses suspicious for liposarcoma.
腹膜后脂肪肉瘤是一种异质性间充质肿瘤,具有广泛的组织学亚型和模糊的临床表现。1它们是局部侵袭性的,发病率在第5 - 10年达到高峰。2占所有实体瘤的0.1-0.2%,占所有软组织瘤的15%。脂肪肉瘤通常很大,最常见于下肢、腹膜后、会阴和肠系膜区。在腹膜后,由于腹腔能够容纳这些缓慢扩张的肿块,它们生长时无症状。我们报告一例72岁男性,因诊断为高级别Gleason 9前列腺癌和橙剂暴露史而就诊于泌尿科和肿瘤科。在他的检查过程中,他抱怨说尽管他尽了最大的努力节食和减肥,但他还是觉得饱了,体重又增加了。由于腹胀,对腹部和骨盆进行CT扫描,发现腹部内有2个大脂肪团,怀疑为脂肪肉瘤。
{"title":"Retroperitoneal liposarcoma: an unusual case of weight gain despite weight loss measures","authors":"Chintav Shah, S. Jaggernauth, V. A. Ayapati, B. o'Brian","doi":"10.15406/JCPCR.2020.11.00423","DOIUrl":"https://doi.org/10.15406/JCPCR.2020.11.00423","url":null,"abstract":"Retroperitoneal liposarcomas are a heterogenous group of mesenchymal tumors that have a wide spectrum of histological subtypes and vague clinical presentation. 1 They are locally invasive and the peak incidence is in the 5th decade. 2 They account for 0.1-0.2% of all solid tumors and 15% of all soft-tissue tumors. 2 Liposarcomas are usually large and occur most frequently in the lower extremities, in the retroperitoneal, perineal and mesenteric region. 2 In the retroperitoneum, they grow without symptoms due to the ability of the abdominal cavity to accommodate these slowly expanding masses. 2 We present the case of 72yr old male who presented to urology and oncology due to the diagnosis of igh grade Gleason 9 prostate adenocarcinoma and a history of Agent Orange exposure. In the process of his workup, he complained of feeling full and gaining weight gain despite his best efforts at dieting and weight loss. Due to his abdominal distention, a CT scan of the abdomen and pelvis was performed which demonstrated 2 large fat containing intra abdominal masses suspicious for liposarcoma.","PeriodicalId":15185,"journal":{"name":"Journal of Cancer Prevention & Current Research","volume":"186 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76770700","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Senile sebaceous nevus degenerating to a pseudo glandular basal cell carcinoma 老年性皮脂腺痣变性为伪腺性基底细胞癌
Pub Date : 2020-03-18 DOI: 10.15406/JCPCR.2020.11.00422
K. Elboukhari, A. Rasso, S. Elloudi, H. Baybay, Z. Douhi, F. Mernissi
epidermis and dermis, with a triphasic evolution: alopecic patch with underdeveloped adnexal structures. In puberty, the second phase shows a proliferative and veracious plaque. While the third phase is characterized by the occurrence of benign or more rarely invasive tumors in the preexistent plaque. Dermoscopy finds an important place in the characterization of these stages of evolution, and especially in the detection of transformation. 10-20% of sebaceous nevus is transformed into benign or malignant tumors that Abstract Jadassohn nevus is a congenital hamartoma that is characterized by natural evolution in three stages, with a risk of malignancies occurring in the last phase. This benign adnexal tumor often affects the face and scalp. Dermoscopy can provide a major help for detecting transforming tumors. We report the case of a senile sebaceous Nevus which has been diagnosed after the occurrence of Basal cell carcinoma in a 60 years old man. The originality of this observation remains in the rarity of the pseudo glandular basal cell carcinoma that, in the best of our knowledge, has never been reported in underlying nevus sebaceous.
表皮和真皮,具有三相进化:秃斑与不发达的附件结构。在青春期,第二阶段显示增生和真实的斑块。而第三阶段的特征是在先前存在的斑块中出现良性或更罕见的侵袭性肿瘤。皮肤镜检查在这些进化阶段的表征中占有重要地位,特别是在检测转化方面。摘要Jadassohn痣是一种先天性错构瘤,其特点是自然进化分为三个阶段,最后一个阶段有发生恶性肿瘤的风险。这种良性附件肿瘤常累及面部和头皮。皮肤镜检查可以为发现转化性肿瘤提供重要帮助。我们报告的情况下,老年性皮脂腺痣已被诊断后发生的基底细胞癌在一个60岁的男子。这一观察的原创性在于假性腺基底细胞癌的罕见性,据我们所知,在皮脂腺痣中从未报道过。
{"title":"Senile sebaceous nevus degenerating to a pseudo glandular basal cell carcinoma","authors":"K. Elboukhari, A. Rasso, S. Elloudi, H. Baybay, Z. Douhi, F. Mernissi","doi":"10.15406/JCPCR.2020.11.00422","DOIUrl":"https://doi.org/10.15406/JCPCR.2020.11.00422","url":null,"abstract":"epidermis and dermis, with a triphasic evolution: alopecic patch with underdeveloped adnexal structures. In puberty, the second phase shows a proliferative and veracious plaque. While the third phase is characterized by the occurrence of benign or more rarely invasive tumors in the preexistent plaque. Dermoscopy finds an important place in the characterization of these stages of evolution, and especially in the detection of transformation. 10-20% of sebaceous nevus is transformed into benign or malignant tumors that Abstract Jadassohn nevus is a congenital hamartoma that is characterized by natural evolution in three stages, with a risk of malignancies occurring in the last phase. This benign adnexal tumor often affects the face and scalp. Dermoscopy can provide a major help for detecting transforming tumors. We report the case of a senile sebaceous Nevus which has been diagnosed after the occurrence of Basal cell carcinoma in a 60 years old man. The originality of this observation remains in the rarity of the pseudo glandular basal cell carcinoma that, in the best of our knowledge, has never been reported in underlying nevus sebaceous.","PeriodicalId":15185,"journal":{"name":"Journal of Cancer Prevention & Current Research","volume":"34 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-03-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"73888872","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Benign chondroid syringoma of foot: a clinical dilemma 足部良性软骨样注射器瘤:临床困境
Pub Date : 2020-03-11 DOI: 10.15406/JCPCR.2020.11.00420
Sonam Sharma, S. Sharma
of epithelial cells were also apparent. Cellular pleomorphism was absent (Figure 4). These histopathological findings pointed towards the final diagnosis of a benign chondroid syringoma (eccrine type) of the left foot. Immunohistochemistry (IHC) was also performed, which revealed a strong positivity of inner epithelial layer for cytokeratin (CK) 7 as well as epithelial membrane antigen (EMA) and the outer myoepithelial layer for vimentin, S100 and p63. A negative immunoexpression of tumor cells for p15, p16 and desmin was seen. The post-operative period of the patient was uneventful. There was no evidence of recurrence of the lesion during her 2 year follow-up period. Abstract Chondroid syringoma is a rare skin appendageal tumor which is most commonly encountered in the head and neck region. We herein report an unusual case of a benign chondroid syringoma of the left foot in a 40-year-old female which posed as a diagnostic conundrum. The approach to such a case, differential diagnosis and the management of this rare entity is also presented.
上皮细胞的变化也很明显。细胞多形性缺失(图4)。这些组织病理学结果表明,最终诊断为左脚良性软骨样淋巴瘤(内分泌型)。免疫组化(IHC)结果显示,上皮内层细胞角蛋白(CK) 7、上皮膜抗原(EMA)阳性,肌外层vimentin、S100和p63阳性。肿瘤细胞p15、p16、desmin均呈阴性表达。术后病人的生活平安无事。2年随访期间无病变复发迹象。摘要软骨样囊状瘤是一种罕见的皮肤附件肿瘤,最常见于头颈部。我们在此报告一个不寻常的情况下,良性软骨样淋巴瘤的左脚在一个40岁的女性,这是一个诊断难题。这种情况下的方法,鉴别诊断和管理这种罕见的实体也提出。
{"title":"Benign chondroid syringoma of foot: a clinical dilemma","authors":"Sonam Sharma, S. Sharma","doi":"10.15406/JCPCR.2020.11.00420","DOIUrl":"https://doi.org/10.15406/JCPCR.2020.11.00420","url":null,"abstract":"of epithelial cells were also apparent. Cellular pleomorphism was absent (Figure 4). These histopathological findings pointed towards the final diagnosis of a benign chondroid syringoma (eccrine type) of the left foot. Immunohistochemistry (IHC) was also performed, which revealed a strong positivity of inner epithelial layer for cytokeratin (CK) 7 as well as epithelial membrane antigen (EMA) and the outer myoepithelial layer for vimentin, S100 and p63. A negative immunoexpression of tumor cells for p15, p16 and desmin was seen. The post-operative period of the patient was uneventful. There was no evidence of recurrence of the lesion during her 2 year follow-up period. Abstract Chondroid syringoma is a rare skin appendageal tumor which is most commonly encountered in the head and neck region. We herein report an unusual case of a benign chondroid syringoma of the left foot in a 40-year-old female which posed as a diagnostic conundrum. The approach to such a case, differential diagnosis and the management of this rare entity is also presented.","PeriodicalId":15185,"journal":{"name":"Journal of Cancer Prevention & Current Research","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-03-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"73083687","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
High-grade testicular diffuse B lymphoma, a rare localization: a case report and review of the literature 高度睾丸弥漫性B淋巴瘤,罕见的局部化:1例报告及文献复习
Pub Date : 2020-02-19 DOI: 10.15406/JCPCR.2020.11.00419
Z. Youbi, S. Yossi, P. Sesques, H. Jouhadi
{"title":"High-grade testicular diffuse B lymphoma, a rare localization: a case report and review of the literature","authors":"Z. Youbi, S. Yossi, P. Sesques, H. Jouhadi","doi":"10.15406/JCPCR.2020.11.00419","DOIUrl":"https://doi.org/10.15406/JCPCR.2020.11.00419","url":null,"abstract":"","PeriodicalId":15185,"journal":{"name":"Journal of Cancer Prevention & Current Research","volume":"93 1","pages":"23-25"},"PeriodicalIF":0.0,"publicationDate":"2020-02-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"85685699","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Journal of Cancer Prevention & Current Research
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1