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De Novo Rational Design of Peptide-Based Protein–Protein Inhibitors (Pep-PPIs) Approach by Mapping the Interaction Motifs of the PP Interface and Physicochemical Filtration: A Case on p25-Cdk5-Mediated Neurodegenerative Diseases 通过绘制 PP 界面的相互作用基元和物理化学过滤,从新合理设计基于肽的蛋白质-蛋白质抑制剂(Pep-PPIs)方法:以 p25-Cdk5 介导的神经退行性疾病为例。
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-15 DOI: 10.1002/jcb.30633
Ernest Oduro-Kwateng, Musab Ali, Ibrahim Oluwatobi Kehinde, Zhichao Zhang, Mahmoud E. S. Soliman
<p>Protein–protein interactions, or PPIs, are a part of every biological activity and have been linked to a number of diseases, including cancer, infectious diseases, and neurological disorders. As such, targeting PPIs is considered a strategic and vital approach in the development of new medications. Nonetheless, the wide and flat contact interface makes it difficult to find small-molecule PP inhibitors. An alternative strategy would be to use the PPI interaction motifs as building blocks for the design of peptide-based inhibitors. Herein, we designed 12-mer peptide inhibitors to target p25-inducing-cyclin-dependent kinase (Cdk5) hyperregulation, a PPI that has been shown to perpetuate neuroinflammation, which is one of the major causal implications of neurodegenerative disorders such as Alzheimer's disease, Parkinson's disease, and frontotemporal dementia. We generated a library of 5 062 500 peptide combination sequences (PCS) derived from the interaction motif of Cdk5/p25 PP interface. The 20 amino acids were differentiated into six groups, namely, hydrophobic (aliphatic), aromatic, basic, acidic, unique, and polar uncharged, on the basis of their physiochemical properties. To preserve the interaction motif necessary for ideal binding, de novo modeling of all possible peptide sequence substitutions was considered. A set of filters, backed by the Support Vector Machine (SVM) algorithm, was then used to create a shortlisted custom peptide library that met specific bioavailability, toxicity, and therapeutic relevance, leading to a refined library of 15 PCS. A greedy algorithm and coarse-grained force field were used to predict peptide structure and folding before subsequent modeling studies. Molecular docking was performed to estimate the relative binding affinities, and out of the top hits, Pep15 was subjected to molecular dynamics simulations and binding free-energy calculations in comparison to a known peptide inhibitor with experimental data (template peptide). Interestingly, the identified peptide through our protocol, Pep15, was found to show a significantly higher binding affinity than the reference template peptide (−48.10 ± 0.23 kcal/mol and −17.53 ± 0.27 kcal/mol, respectively). In comparison to the template peptide, Pep15 was found to possess a more compact and buried surface area, tighter binding landscape, and reduced conformational variability, leading to enhanced structural and kinetic stability of the Cdk5/p25 complex. Notably, both peptide inhibitors were found to have a minimal impact on the architectural integrity of the Cdk5/p25 secondary structure.</p><p>Herein, we propose Pep15 as a novel and potentially disruptive peptide drug for Cdk5/p25-mediated neurodegenerative phenotypes that require further clinical investigation. The systematic protocol and findings of this report would serve as a valuable tool in the identification of critical PPI interface reactive residues, designing of analogs, and identification of more potent
蛋白质-蛋白质相互作用(PPIs)是每种生物活动的一部分,与癌症、传染病和神经系统疾病等多种疾病有关。因此,靶向 PPIs 被认为是开发新药物的重要战略方法。然而,由于接触界面宽而平坦,很难找到小分子 PP 抑制剂。另一种策略是将 PPI 相互作用基团作为设计基于肽的抑制剂的构件。在这里,我们设计了 12 个单链肽抑制剂来针对 p25-诱导-环素依赖性激酶(Cdk5)的过度调节,这种 PPI 已被证明会使神经炎症长期存在,而神经炎症是神经退行性疾病(如阿尔茨海默病、帕金森病和额颞叶痴呆症)的主要诱因之一。我们从 Cdk5/p25 PP 界面的相互作用基序中生成了一个包含 5062 500 个多肽组合序列(PCS)的文库。我们根据 20 个氨基酸的理化性质将其分为六组,即疏水(脂肪族)、芳香、碱性、酸性、独特和极性不带电。为了保留理想结合所需的相互作用模式,我们考虑了所有可能的肽序列置换的从头建模。然后,在支持向量机(SVM)算法的支持下,使用一组过滤器来创建符合特定生物利用度、毒性和治疗相关性的入围定制肽库,最终形成了一个由 15 个 PCS 组成的精炼肽库。在随后的建模研究之前,使用了贪婪算法和粗粒度力场来预测多肽的结构和折叠。通过分子对接来估算相对的结合亲和力,并对命中率最高的 Pep15 进行分子动力学模拟和结合自由能计算,并与具有实验数据的已知多肽抑制剂(模板多肽)进行比较。有趣的是,通过我们的方案鉴定出的多肽 Pep15 的结合亲和力明显高于参考模板多肽(分别为 -48.10 ± 0.23 kcal/mol 和 -17.53 ± 0.27 kcal/mol)。与模板肽相比,Pep15 具有更紧凑的埋藏表面积、更紧密的结合景观以及更低的构象变异性,从而增强了 Cdk5/p25 复合物的结构和动力学稳定性。值得注意的是,这两种多肽抑制剂对 Cdk5/p25 二级结构的架构完整性影响极小。在此,我们建议将 Pep15 作为一种新型的、具有潜在破坏性的多肽药物,用于治疗 Cdk5/p25 介导的神经退行性表型,这需要进一步的临床研究。本报告的系统方案和研究结果将成为鉴定关键 PPI 界面反应残基、设计类似物和鉴定更有效的多肽 PPI 抑制剂的宝贵工具。
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引用次数: 0
Activation of α7 Nicotinic Acetylcholine Receptor Improves Muscle Endurance by Upregulating Orosomucoid Expression and Glycogen Content in Mice 激活α7烟碱乙酰胆碱受体可通过上调小鼠的Orosomucoid表达和糖原含量提高肌肉耐力
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-16 DOI: 10.1002/jcb.30630
Fei Chen, Zhen Zhang, Huimin Zhang, Pengyue Guo, Jiayi Feng, Hui Shen, Xia Liu

There are presently no acknowledged therapeutic targets or official drugs for the treatment of muscle fatigue. The alpha7 nicotinic acetylcholine receptor (α7nAChR) is expressed in skeletal muscle, with an unknown role in muscle endurance. Here, we try to explore whether α7nAChR could act as a potential therapeutic target for the treatment of muscle fatigue. Results showed that nicotine and PNU-282987 (PNU), as nonspecific and specific agonists of α7nAChR, respectively, could both significantly increase C57BL6/J mice treadmill-running time in a time- and dose-dependent manner. The improvement effect of PNU on running time and ex vivo muscle fatigue index disappeared when α7nAChR deletion. RNA sequencing revealed that the differential mRNAs affected by PNU were enriched in glycolysis/gluconeogenesis signaling pathways. Further studies found that PNU treatment significantly elevates glycogen content and ATP level in the muscle tissues of α7nAChR+/+ mice but not α7nAChR-/- mice. α7nAChR activation specifically increased endogenous glycogen-targeting protein orosomucoid (ORM) expression both in vivo skeletal muscle tissues and in vitro C2C12 skeletal muscle cells. In ORM1 deficient mice, the positive effects of PNU on running time, glycogen and ATP content, as well as muscle fatigue index, were abolished. Therefore, the activation of α7nAChR could enhance muscle endurance via elevating endogenous anti-fatigue protein ORM and might act as a promising therapeutic strategy for the treatment of muscle fatigue.

目前还没有公认的治疗目标或治疗肌肉疲劳的正式药物。α7烟碱乙酰胆碱受体(α7nAChR)在骨骼肌中表达,在肌肉耐力中的作用尚不清楚。在此,我们试图探讨α7nAChR是否可以作为治疗肌肉疲劳的潜在治疗靶点。结果表明,尼古丁和PNU-282987(PNU)分别作为α7nAChR的非特异性和特异性激动剂,均能以时间和剂量依赖的方式显著增加C57BL6/J小鼠的跑步机跑步时间。当α7nAChR缺失时,PNU对跑步时间和体外肌肉疲劳指数的改善作用消失。RNA测序显示,受PNU影响的不同mRNA富集于糖酵解/糖元生成信号通路。进一步的研究发现,PNU能显著提高α7nAChR+/+小鼠肌肉组织中的糖原含量和ATP水平,但不能提高α7nAChR-/-小鼠的糖原含量和ATP水平。在 ORM1 缺乏的小鼠中,PNU 对跑步时间、糖原和 ATP 含量以及肌肉疲劳指数的积极影响被取消。因此,激活α7nAChR可通过提高内源性抗疲劳蛋白ORM来增强肌肉耐力,并可能成为治疗肌肉疲劳的一种有前景的治疗策略。
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引用次数: 0
Effect of Oridonin on Experimental Animal Model of Bronchopulmonary Dysplasia 奥利多宁对支气管肺发育不良实验动物模型的影响
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-16 DOI: 10.1002/jcb.30632
Shanshan Zhang, Junfu Wang, Zhihong Xin, Chao Sun, Zhiye Ju, Xia Xue, Wen Jiang, Qian Xin, Jue Wang, Zhaohua Zhang, Yun Luan

Bronchopulmonary dysplasia (BPD) is a serious disease that occurs in premature and low-birth-weight infants. In recent years, the incidence of BPD has not decreased, and there is no effective treatment for it. Oridonin (Ori) is a traditional Chinese medicine with a wide range of biological activities, especially pharmacological and anti-inflammatory. It is well known that inflammation plays a key role in BPD. However, the therapeutic effect of Ori on BPD has not been studied. Therefore, in the present study, we will observe the anti-inflammatory activity of Ori in an experimental animal model of BPD. Here, we showed that Ori could significantly decrease hyperoxia-induced alveolar injury, inhibit neutrophil recruitment, myeloperoxidase concentrations, and release inflammatory factors in BPD neonatal rats. Taken together, the experimental results suggested that Ori can significantly improve BPD in neonatal rats by inhibiting inflammatory response.

支气管肺发育不良(BPD)是早产儿和低体重儿的一种严重疾病。近年来,支气管肺发育不良的发病率并未降低,且没有有效的治疗方法。奥利多宁(Ori)是一种传统中药,具有广泛的生物活性,尤其是药理作用和抗炎作用。众所周知,炎症在 BPD 中起着关键作用。然而,豨莶草对 BPD 的治疗效果尚未得到研究。因此,在本研究中,我们将观察 Ori 在 BPD 实验动物模型中的抗炎活性。实验结果表明,Ori 能显著降低高氧诱导的肺泡损伤,抑制中性粒细胞的招募、髓过氧化物酶的浓度以及 BPD 新生儿大鼠炎症因子的释放。综上所述,实验结果表明,Ori 可通过抑制炎症反应显著改善新生大鼠的 BPD。
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引用次数: 0
Correction to “Cytokinetic Abscission: Phosphoinositides and ESCRTs Direct the Final Cut” 细胞分裂:磷酸肌酸和 ESCRT 指导最后的剪切"。
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-15 DOI: 10.1002/jcb.30626

F. Gulluni, M. Martini, E. Hirsch, “Cytokinetic Abscission: Phosphoinositides and ESCRTs Direct the Final Cut,” Journal of Cellular Biochemistry 118, no. 11 (2017): 3561–3568, https://doi.org/10.1002/jcb.26066.

The authors hereby recognize that in writing the article above, they did not adequately acknowledge the significant contributions of sources [1] and [2], which profoundly influenced the shaping of the content of the article.

The compilation of this review benefited substantially from the insights and research provided by the aforementioned sources and the authors regret any oversight in properly attributing the influence of these sources within the text of their article.

F.Gulluni, M. Martini, E. Hirsch, "Cytokinetic Abscission:磷酸肌酸和 ESCRTs 指导最终切割》,《细胞生物化学杂志》第 118 期,第 11 号(2017 年):3561-3568, https://doi.org/10.1002/jcb.26066.The 作者在此承认,在撰写上述文章时,他们没有充分肯定资料来源[1]和[2]的重要贡献,这些贡献对文章内容的形成产生了深远的影响。本综述的编撰在很大程度上得益于上述资料来源提供的见解和研究,作者对在文章正文中未能正确归因于这些资料来源的影响表示遗憾。
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引用次数: 0
Let‑7f‑5p Regulated by Hsa_circ_0000437 Ameliorates Bleomycin-Induced Skin Fibrosis 由 Hsa_circ_0000437 调控的 Let-7f-5p 可改善博莱霉素诱导的皮肤纤维化。
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-14 DOI: 10.1002/jcb.30629
Baiting Liu, Chenxi Li, Yunyao Bo, Guiping Tian, Lijun Yang, Jianjun Si, Lin Zhang, Yuan Yan

The current treatment of skin fibrosis is limited in its effectiveness due to a lack of understanding of the underlying mechanisms. Previous research has shown a connection between microRNAs (miRNAs) and the development of skin fibrosis. Therefore, investigating miRNA for the treatment of skin fibrotic diseases is highly important and merits further exploration. In this study, we have discovered that let-7f-5p could suppress the proliferation, migration, and expression of collagen type I alpha 1 (COL1A1) in human dermal fibroblasts (HDFs). It was further determined that let-7f-5p could target thrombospondin-1 (THBS1), thereby inhibiting the TGF-β2/Smad3 signaling pathway and exerting its biological effects. Additionally, let-7f-5p is regulated by Hsa_circ_0000437, which acts as a sponge molecule for let-7f-5p and consequently regulates the biological function of HDFs. Furthermore, our findings indicate that in vivo overexpression of let-7f-5p leads to a reduction in dermal thickness and COL1A1 expression, effectively inhibiting the progression of bleomycin (BLM)-induced skin fibrosis in mice. Hence, our research enhances the comprehension of the Hsa_circ_0000437/let-7f-5p/THBS1/TGF-β2/Smad3 regulatory network, highlighting the potential of let-7f-5p as a therapeutic approach for the treatment of skin fibrosis.

由于缺乏对潜在机制的了解,目前治疗皮肤纤维化的效果有限。以往的研究表明,微小核糖核酸(miRNA)与皮肤纤维化的发展之间存在联系。因此,研究用于治疗皮肤纤维化疾病的 miRNA 非常重要,值得进一步探索。本研究发现,let-7f-5p 可抑制人真皮成纤维细胞(HDFs)的增殖、迁移和胶原 I 型α1(COL1A1)的表达。研究进一步确定,let-7f-5p 可靶向凝血酶原-1(THBS1),从而抑制 TGF-β2/Smad3 信号通路并发挥其生物效应。此外,let-7f-5p 还受 Hsa_circ_0000437 的调控,Hsa_circ_0000437 是 let-7f-5p 的海绵分子,从而调控 HDFs 的生物功能。此外,我们的研究结果表明,体内过表达 let-7f-5p 会导致真皮厚度和 COL1A1 表达的减少,从而有效抑制博莱霉素(BLM)诱导的小鼠皮肤纤维化的进展。因此,我们的研究加深了对Hsa_circ_0000437/let-7f-5p/THBS1/TGF-β2/Smad3调控网络的理解,凸显了let-7f-5p作为一种治疗方法治疗皮肤纤维化的潜力。
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引用次数: 0
SARS-CoV-2 Spike Protein Induces Time-Dependent CTSL Upregulation in HeLa Cells and Alveolarspheres SARS-CoV-2 Spike 蛋白在 HeLa 细胞和肺泡球中诱导时间依赖性 CTSL 上调
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-07-07 DOI: 10.1002/jcb.30627
Magdalena M. Bolsinger, Alice Drobny, Sibylle Wilfling, Stephanie Reischl, Florian Krach, Raul Moritz, Denise Balta, Ute Hehr, Elisabeth Sock, Florian Bleibaum, Frank Hanses, Beate Winner, Susy Prieto Huarcaya, Philipp Arnold, Friederike Zunke

Autophagy and lysosomal pathways are involved in the cell entry of SARS-CoV-2 virus. To infect the host cell, the spike protein of SARS-CoV-2 binds to the cell surface receptor angiotensin-converting enzyme 2 (ACE2). To allow the fusion of the viral envelope with the host cell membrane, the spike protein has to be cleaved. One possible mechanism is the endocytosis of the SARS-CoV-2–ACE2 complex and subsequent cleavage of the spike protein, mainly by the lysosomal protease cathepsin L. However, detailed molecular and dynamic insights into the role of cathepsin L in viral cell entry remain elusive. To address this, HeLa cells and iPSC-derived alveolarspheres were treated with recombinant SARS-CoV-2 spike protein, and the changes in mRNA and protein levels of cathepsins L, B, and D were monitored. Additionally, we studied the effect of cathepsin L deficiency on spike protein internalization and investigated the influence of the spike protein on cathepsin L promoters in vitro. Furthermore, we analyzed variants in the genes coding for cathepsin L, B, D, and ACE2 possibly associated with disease progression using data from Regeneron's COVID Results Browser and our own cohort of 173 patients with COVID-19, exhibiting a variant of ACE2 showing significant association with COVID-19 disease progression. Our in vitro studies revealed a significant increase in cathepsin L mRNA and protein levels following exposure to the SARS-CoV-2 spike protein in HeLa cells, accompanied by elevated mRNA levels of cathepsin B and D in alveolarspheres. Moreover, an increase in cathepsin L promoter activity was detected in vitro upon spike protein treatment. Notably, the knockout of cathepsin L resulted in reduced internalization of the spike protein. The study highlights the importance of cathepsin L and lysosomal proteases in the SARS-CoV-2 spike protein internalization and suggests the potential of lysosomal proteases as possible therapeutic targets against COVID-19 and other viral infections.

自噬和溶酶体途径参与了 SARS-CoV-2 病毒进入细胞的过程。为了感染宿主细胞,SARS-CoV-2 的尖峰蛋白与细胞表面受体血管紧张素转换酶 2(ACE2)结合。为了使病毒包膜与宿主细胞膜融合,尖峰蛋白必须被裂解。一种可能的机制是,SARS-CoV-2-ACE2 复合物被内吞,随后尖峰蛋白被裂解,主要是被溶酶体蛋白酶 cathepsin L 裂解。为了解决这个问题,我们用重组 SARS-CoV-2 穗状病毒蛋白处理 HeLa 细胞和源自 iPSC 的肺泡球,并监测螯合蛋白 L、B 和 D 的 mRNA 和蛋白水平的变化。此外,我们还研究了螯合蛋白 L 缺乏对尖峰蛋白内化的影响,并在体外研究了尖峰蛋白对螯合蛋白 L 启动子的影响。此外,我们还利用 Regeneron 的 COVID Results Browser 和我们自己的 173 名 COVID-19 患者队列中的数据,分析了可能与疾病进展相关的 cathepsin L、B、D 和 ACE2 编码基因的变异。我们的体外研究显示,在 HeLa 细胞中暴露于 SARS-CoV-2 穗状病毒后,酪蛋白酶 L mRNA 和蛋白水平显著增加,同时肺泡球中酪蛋白酶 B 和 D 的 mRNA 水平也升高。此外,在体外检测到尖峰蛋白处理后, cathepsin L 启动子活性增加。值得注意的是,螯合蛋白 L 的敲除导致尖峰蛋白的内化减少。该研究强调了酪蛋白酶 L 和溶酶体蛋白酶在 SARS-CoV-2 穗状病毒蛋白内化过程中的重要性,并表明溶酶体蛋白酶有可能成为针对 COVID-19 和其他病毒感染的治疗靶点。
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引用次数: 0
14-3-3 Family of Proteins: Biological Implications, Molecular Interactions, and Potential Intervention in Cancer, Virus and Neurodegeneration Disorders 14-3-3 蛋白家族:生物学意义、分子相互作用以及对癌症、病毒和神经变性疾病的潜在干预。
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-06-30 DOI: 10.1002/jcb.30624
Zheng Yao Low, Ashley Jia Wen Yip, Alvin Man Lung Chan, Wee Sim Choo

The 14-3-3 family of proteins are highly conserved acidic eukaryotic proteins (25–32 kDa) abundantly present in the body. Through numerous binding partners, the 14-3-3 is responsible for many essential cellular pathways, such as cell cycle regulation and gene transcription control. Hence, its dysregulation has been linked to the onset of critical illnesses such as cancers, neurodegenerative diseases and viral infections. Interestingly, explorative studies have revealed an inverse correlation of 14-3-3 protein in cancer and neurodegenerative diseases, and the direct manipulation of 14-3-3 by virus to enhance infection capacity has dramatically extended its significance. Of these, COVID-19 has been linked to the 14-3-3 proteins by the interference of the SARS-CoV-2 nucleocapsid (N) protein during virion assembly. Given its predisposition towards multiple essential host signalling pathways, it is vital to understand the holistic interactions between the 14-3-3 protein to unravel its potential therapeutic unit in the future. As such, the general structure and properties of the 14-3-3 family of proteins, as well as their known biological functions and implications in cancer, neurodegeneration, and viruses, were covered in this review. Furthermore, the potential therapeutic target of 14-3-3 proteins in the associated diseases was discussed.

14-3-3 蛋白家族是高度保守的酸性真核生物蛋白(25-32 kDa),大量存在于人体中。通过众多结合伙伴,14-3-3 负责许多重要的细胞通路,如细胞周期调节和基因转录控制。因此,14-3-3 的失调与癌症、神经退行性疾病和病毒感染等重大疾病的发病有关。有趣的是,探索性研究发现,14-3-3 蛋白与癌症和神经退行性疾病呈反相关,而病毒直接操纵 14-3-3 蛋白以增强感染能力,则大大扩展了其意义。其中,COVID-19 通过在病毒组装过程中干扰 SARS-CoV-2 核头壳(N)蛋白而与 14-3-3 蛋白联系在一起。鉴于 COVID-19 易与多种重要的宿主信号通路发生作用,因此了解 14-3-3 蛋白之间的整体相互作用对未来揭示其潜在的治疗单元至关重要。因此,本综述涵盖了 14-3-3 蛋白家族的一般结构和特性,以及它们在癌症、神经变性和病毒中的已知生物学功能和影响。此外,还讨论了 14-3-3 蛋白在相关疾病中的潜在治疗目标。
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引用次数: 0
Divergent Biochemical Properties and Disparate Impact of Arrhythmogenic Calmodulin Mutations on Zebrafish Cardiac Function 致心律失常钙调蛋白突变对斑马鱼心脏功能的不同生化特性和不同影响
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-06-30 DOI: 10.1002/jcb.30619
Sahar I. Da'as, Angelos Thanassoulas, Brian L. Calver, Alaaeldin Saleh, Doua Abdelrahman, Waseem Hasan, Bared Safieh-Garabedian, Iris Kontogianni, Gheyath K. Nasrallah, George Nounesis, F. Anthony Lai, Michail Nomikos

Calmodulin (CaM) is a ubiquitous, small cytosolic calcium (Ca2+)-binding sensor that plays a vital role in many cellular processes by binding and regulating the activity of over 300 protein targets. In cardiac muscle, CaM modulates directly or indirectly the activity of several proteins that play a key role in excitation-contraction coupling (ECC), such as ryanodine receptor type 2 (RyR2), l-type Ca2+ (Cav1.2), sodium (NaV1.5) and potassium (KV7.1) channels. Many recent clinical and genetic studies have reported a series of CaM mutations in patients with life-threatening arrhythmogenic syndromes, such as long QT syndrome (LQTS) and catecholaminergic polymorphic ventricular tachycardia (CPVT). We recently showed that four arrhythmogenic CaM mutations (N98I, D132E, D134H, and Q136P) significantly reduce the binding of CaM to RyR2. Herein, we investigate in vivo functional effects of these CaM mutations on the normal zebrafish embryonic heart function by microinjecting complementary RNA corresponding to CaMN98I, CaMD132E, CaMD134H, and CaMQ136P mutants. Expression of CaMD132E and CaMD134H mutants results in significant reduction of the zebrafish heart rate, mimicking a severe form of human bradycardia, whereas expression of CaMQ136P results in an increased heart rate mimicking human ventricular tachycardia. Moreover, analysis of cardiac ventricular rhythm revealed that the CaMD132E and CaMN98I zebrafish groups display an irregular pattern of heart beating and increased amplitude in comparison to the control groups. Furthermore, circular dichroism spectroscopy experiments using recombinant CaM proteins reveals a decreased structural stability of the four mutants compared to the wild-type CaM protein in the presence of Ca2+. Finally, Ca2+-binding studies indicates that all CaM mutations display reduced CaM Ca2+-binding affinities, with CaMD132E exhibiting the most prominent change. Our data suggest that CaM mutations can trigger different arrhythmogenic phenotypes through multiple and complex molecular mechanisms.

钙调蛋白(CaM)是一种无处不在的小型细胞膜钙(Ca2+)结合传感器,它通过结合和调节 300 多种蛋白质靶标的活性,在许多细胞过程中发挥着重要作用。在心肌中,CaM 直接或间接地调节在兴奋-收缩耦联(ECC)中发挥关键作用的几种蛋白质的活性,如雷诺丁受体 2 型(RyR2)、l 型 Ca2+ 通道(Cav1.2)、钠通道(NaV1.5)和钾通道(KV7.1)。最近的许多临床和遗传研究报告了一系列CaM突变在危及生命的致心律失常综合征(如长QT综合征(LQTS)和儿茶酚胺能多形性室性心动过速(CPVT))患者中的应用。我们最近发现,四种致心律失常的 CaM 突变(N98I、D132E、D134H 和 Q136P)会显著减少 CaM 与 RyR2 的结合。在此,我们通过显微注射与 CaMN98I、CaMD132E、CaMD134H 和 CaMQ136P 突变体相对应的互补 RNA,研究这些 CaM 突变对斑马鱼胚胎正常心脏功能的体内功能影响。表达 CaMD132E 和 CaMD134H 突变体会导致斑马鱼心率显著下降,模拟人类心动过缓的严重形式,而表达 CaMQ136P 则会导致心率上升,模拟人类室性心动过速。此外,对心室节律的分析表明,与对照组相比,CaMD132E 和 CaMN98I 斑马鱼组显示出不规则的心脏跳动模式和增大的振幅。此外,利用重组 CaM 蛋白进行的圆二色性光谱实验显示,与野生型 CaM 蛋白相比,这四种突变体在 Ca2+ 存在时的结构稳定性降低。最后,Ca2+ 结合研究表明,所有 CaM 突变体都显示出 CaM Ca2+ 结合亲和力降低,其中 CaMD132E 的变化最为显著。我们的数据表明,CaM 突变可通过多种复杂的分子机制引发不同的致心律失常表型。
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引用次数: 0
The Prognostic Biomarker RAB7A Promotes Growth and Metastasis of Liver Cancer Cells by Regulating Glycolysis and YAP1 Activation 预后生物标志物RAB7A通过调节糖酵解和YAP1活化促进肝癌细胞的生长和转移
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-06-26 DOI: 10.1002/jcb.30621
Jun-Yuan Zhang, Xilin Zhu, Ying Liu, Xiaopan Wu

Activating transcription factor 6 (ATF6) and its downstream genes are involved in progression of hepatocellular carcinoma (HCC). Herein, we demonstrated that sulfhydration of Ras-related protein Rab-7a (RAB7A) was regulated by ATF6. High expression of RAB7A indicated poor prognosis of HCC patients. RAB7A overexpression contributed to proliferation, colony formation, migration, and invasion of HepG2 and Hep3B cells. Furthermore, we found that RAB7A enhanced aerobic glycolysis in HepG2 cells, indicating a higher degree of tumor malignancy. Mechanistically, RAB7A suppressed Yes-associated protein 1 (YAP1) binding to 14-3-3 and conduced to YAP1 nuclear translocation and activation, promoting its downstream gene expression, thereby promoting growth and metastasis of liver cancer cells. In addition, knocking down RAB7A attenuated the progression of orthotopic liver tumors in mice. These findings illustrate the important role of RAB7A in regulating HCC progression. Thus, RAB7A may be a potential innovative target for HCC treatment.

激活转录因子 6(ATF6)及其下游基因参与了肝细胞癌(HCC)的进展。在此,我们证实了 Ras 相关蛋白 Rab-7a (RAB7A)的硫氢化受 ATF6 的调控。RAB7A 的高表达预示着 HCC 患者的不良预后。RAB7A 过表达有助于 HepG2 和 Hep3B 细胞的增殖、集落形成、迁移和侵袭。此外,我们还发现 RAB7A 增强了 HepG2 细胞的有氧糖酵解,这表明肿瘤的恶性程度更高。从机理上讲,RAB7A抑制了Yes相关蛋白1(YAP1)与14-3-3的结合,并导致YAP1核转位和活化,促进其下游基因的表达,从而促进肝癌细胞的生长和转移。此外,敲除 RAB7A 可减轻小鼠正位肝肿瘤的进展。这些发现说明了 RAB7A 在调控 HCC 进展中的重要作用。因此,RAB7A 可能是治疗 HCC 的潜在创新靶点。
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引用次数: 0
The Role and Clinical Relevance of Glycolysis-Associated Genes on Immune Infiltration in Hepatocellular Carcinoma 糖酵解相关基因对肝细胞癌免疫渗透的作用及临床意义
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-06-25 DOI: 10.1002/jcb.30620
Jing Li, Peng Su, Ting Li, Yang Hao, Tianjun Wang, Lei Fu, Xin Liu

Hepatocellular carcinoma (HCC) poses a significant challenge with dismal survival rates, necessitating a deeper understanding of its molecular mechanisms and the development of improved therapies. Metabolic reprogramming, particularly heightened glycolysis, plays a crucial role in HCC progression. Glycolysis-associated genes (GAGs) emerge as key players in HCC pathogenesis, influencing the tumor microenvironment and immune responses. This study aims to investigate the intricate interplay between GAGs and the immune landscape within HCC, offering valuable insights into potential prognostic markers and therapeutic targets to enhance treatment strategies and patient outcomes. Through the exploration of GAGs, we have identified two distinct molecular glycolytic subtypes in HCC patients, each exhibiting significant differences in both the immune microenvironment and prognosis. A risk model comprising five key GAGs was formulated and subsequently evaluated for their predictive accuracy. Our findings underscore the diverse tumor microenvironment and immune responses associated with the varying glycolytic subtypes observed in HCC. The identified key GAGs hold promise as prognostic indicators for evaluating HCC risk levels, predicting patient outcomes, and guiding clinical treatment decisions, particularly in the context of anticipating responses to immunotherapy drugs.

肝细胞癌(HCC)的存活率很低,是一项重大挑战,因此有必要加深对其分子机制的了解,并开发出更好的疗法。代谢重编程,尤其是糖酵解的增加,在 HCC 的进展中起着至关重要的作用。糖酵解相关基因(GAGs)在 HCC 发病机制中扮演着关键角色,影响着肿瘤微环境和免疫反应。本研究旨在探究 GAGs 与 HCC 内部免疫环境之间错综复杂的相互作用,为潜在的预后标志物和治疗靶点提供有价值的见解,从而改善治疗策略和患者预后。通过对 GAGs 的研究,我们在 HCC 患者中发现了两种不同的分子糖代谢亚型,每种亚型在免疫微环境和预后方面都有显著差异。我们建立了一个由五个关键 GAGs 组成的风险模型,并随后对其预测准确性进行了评估。我们的研究结果表明,不同的肿瘤微环境和免疫反应与 HCC 中观察到的不同糖代谢亚型有关。已确定的关键 GAGs 有望成为评估 HCC 风险水平、预测患者预后和指导临床治疗决策的预后指标,尤其是在预测对免疫疗法药物的反应方面。
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引用次数: 0
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Journal of cellular biochemistry
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