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In Silico Hybridization and Molecular Dynamics Simulations for the Identification of Candidate Human MicroRNAs for Inhibition of Virulent Proteins' Expression in Staphylococcus aureus 抑制金黄色葡萄球菌毒力蛋白表达的候选人microrna的硅杂交和分子动力学模拟
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-10 DOI: 10.1002/jcb.30684
Harshita Tiwari, Subhadip Saha, Monidipa Ghosh

Staphylococcus aureus is a major threat to human health, causing infections that range in severity from moderate to fatal. The rising rates of antibiotic resistance highlight the critical need for new therapeutic techniques to combat this infection. It has been recently discovered that microRNAs (miRNAs) are essential for cross-kingdom communication, especially when it comes to host-pathogen interactions. It has been demonstrated that these short noncoding RNAs control gene expression in the gut microbiota, maintaining homeostasis; dysbiosis in this system has been linked to several diseases, including cancer. Our research attempts to use this understanding to target specific bacterial species and prevent severe diseases. In particular, we look for putative human miRNAs that can attach to virulent bacterial proteins' mRNA and prevent them from being expressed. In-silico hybridization experiments were performed between 100 human miRNA sequences with varied expression levels in gram-positive bacterial infections and five virulence factor genes. In addition, these miRNAs' binding properties were investigated using molecular dynamics (MD) simulations. Our findings demonstrate that human miRNAs can target and inhibit the expression of bacterial virulent genes, thereby opening up new paths for developing innovative miRNA-based therapeutics. The implementation of MD simulations in our study not only improves the validity of our findings but also proposes a new method for constructing miRNA-based therapies against life-threatening bacterial infections.

金黄色葡萄球菌是对人类健康的主要威胁,引起的感染严重程度从中度到致命。抗生素耐药性的上升突出表明迫切需要新的治疗技术来对抗这种感染。最近发现,microRNAs (miRNAs)对于跨界交流至关重要,特别是当涉及到宿主-病原体相互作用时。已经证明,这些短的非编码rna控制肠道微生物群中的基因表达,维持体内平衡;该系统的生态失调与包括癌症在内的几种疾病有关。我们的研究试图利用这一认识来针对特定的细菌种类并预防严重的疾病。特别是,我们寻找假定的人类mirna,可以附着在有毒细菌蛋白的mRNA上并阻止它们的表达。对革兰氏阳性细菌感染中不同表达水平的100个人类miRNA序列与5个毒力因子基因进行了硅基杂交实验。此外,利用分子动力学(MD)模拟研究了这些mirna的结合特性。我们的研究结果表明,人类mirna可以靶向和抑制细菌毒力基因的表达,从而为开发创新的基于mirna的治疗方法开辟了新的途径。在我们的研究中,MD模拟的实施不仅提高了我们研究结果的有效性,而且为构建基于mirna的治疗方法来对抗危及生命的细菌感染提供了一种新的方法。
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引用次数: 0
RETRACTION to “Adipose Tissue-Derived Stem Cells Inhibit Hypertrophic Scar (HS) Fibrosis via p38/MAPK Pathway” 撤回到“脂肪组织来源的干细胞通过p38/MAPK途径抑制肥厚性瘢痕(HS)纤维化”。
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-10 DOI: 10.1002/jcb.30689

RETRACTION: C.-Y. Chai, J. Song, Z. Tan, I.-C. Tai, C. Zhang, and S. Sun, “Adipose Tissue-Derived Stem Cells Inhibit Hypertrophic Scar (HS) Fibrosis via p38/MAPK Pathway,” Journal of Cellular Biochemistry 120, no. 3 (2019): 4057–4064, https://doi.org/10.1002/jcb.27689.

The above article, published online on 27 September 2018 in Wiley Online Library (wileyonlinelibrary.com), has been retracted by agreement between the authors; the journal Editor-in-Chief, Christian Behl; and Wiley Periodicals LLC. The retraction has been agreed due to concerns raised by third parties on the data presented in the article. Specifically, multiple image elements in Figures 1, 2, 3, and 4 were found to have been previously published by different author groups. Accordingly, the conclusions of this article are considered invalid by the editors.

收缩:彭译葶。柴俊,宋志强,谭志强。张春华,孙淑娟,“脂肪组织源性干细胞抑制增生性瘢痕(HS)纤维化的研究进展”,《细胞生物化学杂志》,第12期。3 (2019): 4057-4064, https://doi.org/10.1002/jcb.27689。上述文章于2018年9月27日在线发表在Wiley在线图书馆(wileyonlinelibrary.com)上,经作者同意撤回;杂志主编克里斯蒂安·贝尔;和Wiley期刊有限责任公司。由于第三方对文章中提供的数据提出了担忧,已经同意撤回。具体来说,图1、2、3和4中的多个图像元素被发现是由不同的作者小组先前发表过的。因此,本文的结论被编辑认为是无效的。
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引用次数: 0
Intrinsic Factors Behind the Long-COVID: V. Immunometabolic Disorders 长期covid背后的内在因素:V.免疫代谢紊乱。
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-05 DOI: 10.1002/jcb.30683
Muhamed Adilović, Altijana Hromić-Jahjefendić, Lejla Mahmutović, Jasmin Šutković, Alberto Rubio-Casillas, Elrashdy M. Redwan, Vladimir N. Uversky

The complex link between COVID-19 and immunometabolic diseases demonstrates the important interaction between metabolic dysfunction and immunological response during viral infections. Severe COVID-19, defined by a hyperinflammatory state, is greatly impacted by underlying chronic illnesses aggravating the cytokine storm caused by increased levels of Pro-inflammatory cytokines. Metabolic reprogramming, including increased glycolysis and altered mitochondrial function, promotes viral replication and stimulates inflammatory cytokine production, contributing to illness severity. Mitochondrial metabolism abnormalities, strongly linked to various systemic illnesses, worsen metabolic dysfunction during and after the pandemic, increasing cardiovascular consequences. Long COVID-19, defined by chronic inflammation and immune dysregulation, poses continuous problems, highlighting the need for comprehensive therapy solutions that address both immunological and metabolic aspects. Understanding these relationships shows promise for effectively managing COVID-19 and its long-term repercussions, which is the focus of this review paper.

COVID-19与免疫代谢疾病之间的复杂联系表明,病毒感染期间代谢功能障碍与免疫反应之间存在重要的相互作用。严重的COVID-19被定义为高炎症状态,受到潜在慢性疾病的严重影响,这些疾病加剧了由促炎细胞因子水平升高引起的细胞因子风暴。代谢重编程,包括糖酵解增加和线粒体功能改变,促进病毒复制,刺激炎症细胞因子的产生,导致疾病严重。与各种全身性疾病密切相关的线粒体代谢异常,在大流行期间和之后加剧了代谢功能障碍,增加了心血管后果。长期的COVID-19以慢性炎症和免疫失调为特征,带来了持续的问题,强调需要同时解决免疫和代谢方面的综合治疗解决方案。了解这些关系有助于有效管理COVID-19及其长期影响,这是本综述的重点。
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引用次数: 0
Circ-ECH1 May Compete With miR-708-5p to Regulate Ntrk2 in Bronchopulmonary Dysplasia Circ-EC1可能与miR-708-5p竞争调控支气管肺发育不良中的Ntrk2
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-25 DOI: 10.1002/jcb.30678
Hanrong Cheng, Dongcai Li, Yuming Tang, Tianyong Hu, Benqing Wu

Bronchopulmonary dysplasia (BPD) affects patients' quality of life. Circular RNAs participated in BPD. However, circ-ECH1's role in BPD has not been reported yet. This study aimed to explore the role and mechanism of circ-ECH1 in BPD. Hyperoxia-treated type II alveolar epithelial cells (L2 cells) were used as the in vitro BPD model. CCK-8, flow cytometry, and reactive oxygen species (ROS) were used to evaluate cell viability. Fluorescence in situ hybridization confirmed the subcellular localization. Circ-ECH1 overexpression (or inhibited) and miR-708-5p mimics were used to investigate the roles of circ-ECH1 and miR-708-5p in BPD. Quantitative reverse-transcription polymerase reaction (qRT-PCR) detected the expressions of circ-ECH1, miR-708-5p, and neurotrophic receptor tyrosine kinase 2 (Ntrk2). Ntrk2 expression was evaluated by Western blot analysis. Changes in lung tissues were evaluated by hematoxylin and eosin staining. Pulmonary fibrosis was examined by Mason staining. TUNEL staining was performed to evaluate cell apoptosis in lung tissues. RNA sequencing was performed in the lung tissues of BPD rats. The binding between circ-ECH1 and miR-708-5p was confirmed through dual luciferase activity. Hyperoxia reduced cell viability and increased cell apoptosis and ROS accumulation. In addition, hyperoxia decreased the expression levels of circ-ECH1, which is mainly located in the cytoplasm. Circ-ECH1 overexpression increased cell viability but reduced cell apoptosis and ROS accumulation. On the contrary, interference with circ-ECH1 further promoted cell apoptosis and reduced cell activity. Furthermore, circ-ECH1 overexpression reduced the incidence of pulmonary fibrosis and lung cell apoptosis. RNA sequencing, followed by qRT-PCR, confirmed that the expressions of Ntrk2 and miR-708-5p were affected by circ-ECH1. miR-708-5p mimics reversed the role of circ-ECH1 in the BPD. Mechanistically, circ-ECH1 may bind with miR-708-5p to regulate Ntrk2 expression. Circ-ECH1 may compet with miR-708-5p to regulate Ntrk2 expression in BPD. The findings provided a new target for BPD treatment.

支气管肺发育不良(BPD)影响患者的生活质量。环状 RNA 参与了 BPD 的研究。然而,circ-ECH1在BPD中的作用尚未见报道。本研究旨在探讨 circ-ECH1 在 BPD 中的作用和机制。研究采用高氧处理的 II 型肺泡上皮细胞(L2 细胞)作为体外 BPD 模型。使用 CCK-8、流式细胞术和活性氧(ROS)评估细胞活力。荧光原位杂交证实了亚细胞定位。研究人员使用circ-ECH1过表达(或抑制)和miR-708-5p模拟物来研究circ-ECH1和miR-708-5p在BPD中的作用。定量反转录聚合酶反应(qRT-PCR)检测了circ-EC1、miR-708-5p和神经营养受体酪氨酸激酶2(Ntrk2)的表达。通过 Western 印迹分析评估了 Ntrk2 的表达。通过苏木精和伊红染色评估肺组织的变化。肺纤维化通过 Mason 染色法进行检测。TUNEL染色用于评估肺组织中的细胞凋亡。对 BPD 大鼠的肺组织进行了 RNA 测序。通过双重荧光素酶活性证实了 circ-ECH1 与 miR-708-5p 之间的结合。高氧降低了细胞活力,增加了细胞凋亡和 ROS 积累。此外,高氧还降低了主要位于细胞质中的 circ-ECH1 的表达水平。Circ-ECH1 的过表达提高了细胞活力,但减少了细胞凋亡和 ROS 积累。相反,干扰 circ-ECH1 会进一步促进细胞凋亡并降低细胞活性。此外,circ-EC1 的过表达还降低了肺纤维化和肺细胞凋亡的发生率。RNA 测序和 qRT-PCR 证实,Ntrk2 和 miR-708-5p 的表达受 circ-ECH1 的影响。从机理上讲,circ-EC1 可能与 miR-708-5p 结合以调控 Ntrk2 的表达。circ-ECH1 可能与 miR-708-5p 竞争,从而调节 Ntrk2 在 BPD 中的表达。这些发现为治疗 BPD 提供了一个新的靶点。
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引用次数: 0
Reduction of Chemoresistance by Claudin-14-Targeting Peptide in Human Colorectal Cancer Cells Claudin-14靶向肽降低人类结直肠癌细胞的抗药性
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-20 DOI: 10.1002/jcb.30675
Yuko Mizukami, Shotaro Hashimoto, Tomoka Ando, Yoshinobu Ishikawa, Hiroaki Eguchi, Yuta Yoshino, Toshiyuki Matsunaga, Nobuhisa Matsuhashi, Akira Ikari

The expression of claudins (CLDNs), major components of tight junctions (TJs), is abnormal in various solid tumors. CLDN14 is highly expressed in human colorectal cancer (CRC) tissues and confers chemoresistance. CLDN14 may become a novel therapeutic target for CRC, but CLDN14-targeting drugs have not been developed. Here, we searched for a CLDN14-targeting peptide, which can suppress CLDN14 expression and chemoresistance using human CRC-derived DLD-1 and LoVo cells. Among some short peptides which mimic the second extracellular loop structure of CLDN14, PSGMK most strongly suppressed the protein expression of CLDN14. The mRNA expression of other endogenous TJ components was unchanged by PSGMK. The PSGMK-induced reduction of CLDN14 protein was inhibited by chloroquine, a lysosome inhibitor, and monodansylcadaverine, a clathrin-dependent endocytosis inhibitor, indicating that PSGMK may enhance endocytosis and lysosomal degradation of CLDN14. In a three-dimensional culture model, the oxidative stress was significantly reduced by PSGMK, whereas hypoxia stress was not. Furthermore, the expression levels of nuclear factor erythroid 2-related factor 2, an oxidative stress response factor, and its target genes were decreased by PSGMK. These results suggest that PSGMK relieves stress conditions in spheroids. The cell viability of spheroids was decreased by anticancer drugs such as doxorubicin and oxaliplatin, which was exaggerated by the cotreatment with PSGMK. Our data indicate that CLDN14-targeting peptide, PSGMK has an anti-chemoresistance effect in CRC cells.

在各种实体瘤中,紧密连接(TJ)的主要成分--CLDNs(Claudins)的表达都不正常。CLDN14 在人类结直肠癌(CRC)组织中高表达,并具有化疗抗药性。CLDN14 可能成为治疗 CRC 的新靶点,但目前尚未开发出针对 CLDN14 的药物。在此,我们利用人CRC衍生的DLD-1和LoVo细胞寻找一种能抑制CLDN14表达和化疗耐药性的CLDN14靶向肽。在一些模仿CLDN14胞外第二环结构的短肽中,PSGMK对CLDN14蛋白表达的抑制作用最强。PSGMK 对其他内源性 TJ 成分的 mRNA 表达没有影响。溶酶体抑制剂氯喹和凝集素依赖性内吞抑制剂单丹参素抑制了 PSGMK 诱导的 CLDN14 蛋白的减少,这表明 PSGMK 可能会增强 CLDN14 的内吞和溶酶体降解。在三维培养模型中,PSGMK能显著降低氧化应激,而缺氧应激则不能。此外,PSGMK 还降低了氧化应激反应因子--核因子红细胞 2 相关因子 2 及其靶基因的表达水平。这些结果表明,PSGMK 能缓解球形细胞的应激条件。多柔比星和奥沙利铂等抗癌药物会降低球形细胞的存活率,而与 PSGMK 联合处理则会加剧这种情况。我们的数据表明,CLDN14靶向肽PSGMK对CRC细胞有抗癌作用。
{"title":"Reduction of Chemoresistance by Claudin-14-Targeting Peptide in Human Colorectal Cancer Cells","authors":"Yuko Mizukami,&nbsp;Shotaro Hashimoto,&nbsp;Tomoka Ando,&nbsp;Yoshinobu Ishikawa,&nbsp;Hiroaki Eguchi,&nbsp;Yuta Yoshino,&nbsp;Toshiyuki Matsunaga,&nbsp;Nobuhisa Matsuhashi,&nbsp;Akira Ikari","doi":"10.1002/jcb.30675","DOIUrl":"10.1002/jcb.30675","url":null,"abstract":"<div>\u0000 \u0000 <p>The expression of claudins (CLDNs), major components of tight junctions (TJs), is abnormal in various solid tumors. CLDN14 is highly expressed in human colorectal cancer (CRC) tissues and confers chemoresistance. CLDN14 may become a novel therapeutic target for CRC, but CLDN14-targeting drugs have not been developed. Here, we searched for a CLDN14-targeting peptide, which can suppress CLDN14 expression and chemoresistance using human CRC-derived DLD-1 and LoVo cells. Among some short peptides which mimic the second extracellular loop structure of CLDN14, PSGMK most strongly suppressed the protein expression of CLDN14. The mRNA expression of other endogenous TJ components was unchanged by PSGMK. The PSGMK-induced reduction of CLDN14 protein was inhibited by chloroquine, a lysosome inhibitor, and monodansylcadaverine, a clathrin-dependent endocytosis inhibitor, indicating that PSGMK may enhance endocytosis and lysosomal degradation of CLDN14. In a three-dimensional culture model, the oxidative stress was significantly reduced by PSGMK, whereas hypoxia stress was not. Furthermore, the expression levels of nuclear factor erythroid 2-related factor 2, an oxidative stress response factor, and its target genes were decreased by PSGMK. These results suggest that PSGMK relieves stress conditions in spheroids. The cell viability of spheroids was decreased by anticancer drugs such as doxorubicin and oxaliplatin, which was exaggerated by the cotreatment with PSGMK. Our data indicate that CLDN14-targeting peptide, PSGMK has an anti-chemoresistance effect in CRC cells.</p></div>","PeriodicalId":15219,"journal":{"name":"Journal of cellular biochemistry","volume":"126 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142675846","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Solasodine Downregulates ABCB1 Overexpression in Multidrug Resistant Cancer Cells Via Inhibiting Nrf2/Keap1 Signaling Pathway 索拉索定通过抑制 Nrf2/Keap1 信号通路下调耐多药癌细胞中 ABCB1 的过度表达
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-13 DOI: 10.1002/jcb.30674
Pradhapsingh Bharathiraja, Sugumar Baskar, N. Rajendra Prasad

Multidrug-resistant (MDR) cancer cells maintain redox homeostasis to eliminate oxidative stress-mediated cell death. This study explores the effects of solasodine on regulating P-glycoprotein (P-gp) expression through the Nrf2/Keap1 signaling pathway and oxidative stress-induced sensitization of drug-resistant cancer cells to chemotherapeutics. Initially, the oxidative stress indicators such as intracellular ROS generation, the levels of 8-hydroxy-2-deoxyguanosine (8-OHdG) and gamma-H2AX (γ-H2AX) in the KBChR-8-5 drug-resistant cells were measured. Additionally, the protein expression levels of Nuclear factor erythroid 2-related factor 2 (Nrf-2), Kelch-like ECH-associated protein 1 (Keap1), and ATP Binding Cassette Subfamily B Member 1 (ABCB1)/P-gp were measured at various concentrations of solasodine (1, 5, & 10 µM) through immunofluorescence and western blot analysis. The antioxidant activities in the KBChR-8-5 cells were assessed using established protocols. In this investigation, the treatment with solasodine and doxorubicin combination showed a notable increase in intracellular ROS generation in KBChR-8-5 cells. Furthermore, this combination treatment led to enhanced nuclear condensation, elevated levels of 8-OHdG, and increased γ-H2AX foci formation in the KBChR-8-5 cells. Solasodine treatment effectively inhibited the nuclear translocation of Nrf2 and activation of the ABCB1 gene, consequently preventing overexpression of P-gp in KBChR-8-5 cells. Additionally, the combination therapy increased the lipid peroxidation levels while simultaneously reducing the activities of antioxidant enzymes such as superoxide dismutase (SOD), catalase (CAT), glutathione peroxidase (GPx), and the levels of glutathione (GSH). These results demonstrated that solasodine disrupts redox balance, and overcomes drug resistance by downregulating P-gp via regulating Nrf2/Keap1 signaling pathway in MDR cancer cells.

耐多药(MDR)癌细胞能维持氧化还原平衡,以消除氧化应激介导的细胞死亡。本研究探讨了索拉索定通过Nrf2/Keap1信号通路调节P-糖蛋白(P-gp)表达的作用,以及氧化应激诱导的耐药癌细胞对化疗药物的敏感性。首先测量了KBChR-8-5耐药细胞的氧化应激指标,如细胞内ROS生成、8-羟基-2-脱氧鸟苷(8-OHdG)和γ-H2AX(γ-H2AX)水平。此外,在不同浓度的索拉索定(1、5 和 10 µM)下,还通过免疫荧光和 Western 印迹分析测定了核因子红细胞 2 相关因子 2(Nrf-2)、Kelch 样 ECH 相关蛋白 1(Keap1)和 ATP 结合通路 B 亚家族成员 1(ABCB1)/P-gp 的蛋白表达水平。KBChR-8-5 细胞中的抗氧化活性采用既定方案进行评估。在这项研究中,索拉索定和多柔比星的联合治疗显示,KBChR-8-5 细胞中细胞内 ROS 的生成显著增加。此外,这种组合处理还导致 KBChR-8-5 细胞核缩合增强、8-OHdG 水平升高和 γ-H2AX 病灶形成增加。索拉索定治疗可有效抑制 Nrf2 的核转位和 ABCB1 基因的激活,从而防止 P-gp 在 KBChR-8-5 细胞中过度表达。此外,联合疗法增加了脂质过氧化水平,同时降低了超氧化物歧化酶(SOD)、过氧化氢酶(CAT)、谷胱甘肽过氧化物酶(GPx)等抗氧化酶的活性和谷胱甘肽(GSH)的水平。这些结果表明,索拉索定能破坏氧化还原平衡,并通过调节 Nrf2/Keap1 信号通路下调 MDR 癌细胞中的 P-gp 来克服耐药性。
{"title":"Solasodine Downregulates ABCB1 Overexpression in Multidrug Resistant Cancer Cells Via Inhibiting Nrf2/Keap1 Signaling Pathway","authors":"Pradhapsingh Bharathiraja,&nbsp;Sugumar Baskar,&nbsp;N. Rajendra Prasad","doi":"10.1002/jcb.30674","DOIUrl":"10.1002/jcb.30674","url":null,"abstract":"<div>\u0000 \u0000 <p>Multidrug-resistant (MDR) cancer cells maintain redox homeostasis to eliminate oxidative stress-mediated cell death. This study explores the effects of solasodine on regulating P-glycoprotein (P-gp) expression through the Nrf2/Keap1 signaling pathway and oxidative stress-induced sensitization of drug-resistant cancer cells to chemotherapeutics. Initially, the oxidative stress indicators such as intracellular ROS generation, the levels of 8-hydroxy-2-deoxyguanosine (8-OHdG) and gamma-H2AX (γ-H2AX) in the KBChR-8-5 drug-resistant cells were measured. Additionally, the protein expression levels of Nuclear factor erythroid 2-related factor 2 (Nrf-2), Kelch-like ECH-associated protein 1 (Keap1), and ATP Binding Cassette Subfamily B Member 1 (ABCB1)/P-gp were measured at various concentrations of solasodine (1, 5, &amp; 10 µM) through immunofluorescence and western blot analysis. The antioxidant activities in the KBChR-8-5 cells were assessed using established protocols. In this investigation, the treatment with solasodine and doxorubicin combination showed a notable increase in intracellular ROS generation in KBChR-8-5 cells. Furthermore, this combination treatment led to enhanced nuclear condensation, elevated levels of 8-OHdG, and increased γ-H2AX foci formation in the KBChR-8-5 cells. Solasodine treatment effectively inhibited the nuclear translocation of Nrf2 and activation of the <i>ABCB1</i> gene, consequently preventing overexpression of P-gp in KBChR-8-5 cells. Additionally, the combination therapy increased the lipid peroxidation levels while simultaneously reducing the activities of antioxidant enzymes such as superoxide dismutase (SOD), catalase (CAT), glutathione peroxidase (GPx), and the levels of glutathione (GSH). These results demonstrated that solasodine disrupts redox balance, and overcomes drug resistance by downregulating P-gp via regulating Nrf2/Keap1 signaling pathway in MDR cancer cells.</p>\u0000 </div>","PeriodicalId":15219,"journal":{"name":"Journal of cellular biochemistry","volume":"126 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142620389","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Structural and Functional Insight Into YefM–YoeB Complex of Toxin–Antitoxin System From Streptococcus pneumoniae 对肺炎链球菌毒素-抗毒素系统 YefM-YoeB 复合物的结构和功能的深入研究
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-12 DOI: 10.1002/jcb.30672
Do-Hee Kim, Yong-Chan Lee, Chenglong Jin, Sung-Min Kang, Su-Jin Kang, Hoon-Seok Kang, Bong-Jin Lee

Streptococcus pneumonia is a Gram-positive and facultative anaerobic bacterium that causes a number of diseases, including otitis media, community-acquired pneumonia, sepsis, and meningitis. With the emergence of antibiotic-resistant strains, there is an urgent need to develop antibiotics with a novel mechanism. The toxin–antitoxin (TA) system, which is primarily found in prokaryotes, consists of a toxin and its equivalent antitoxin genes. The YefM–YoeB module is a Type II TA system, where the YoeB toxin functions as a putative mRNA interferase upon activation, while the YefM antitoxin acts as a transcription repressor by binding to its promoter region along with YoeB. In this study, we determined the crystal structure of the YefM–YoeB complex from S. pneumoniae TIGR4 to comprehend the binding mechanism of the TA system. Furthermore, an in vitro ribonuclease activity assay was conducted to identify the ribonuclease activity of the YoeB toxin. Additionally, furthermore, the oligomeric state of the YefM–YoeB complex in solution was investigated, and a DNA-binding mode was proposed. These structural and functional insights into the YefM–YoeB complex could provide valuable information for the development of novel antibiotics targeting S. pneumonia-associated diseases.

肺炎链球菌是一种革兰氏阳性兼兼性厌氧细菌,可引起多种疾病,包括中耳炎、社区获得性肺炎、败血症和脑膜炎。随着抗生素耐药菌株的出现,迫切需要开发具有新机制的抗生素。毒素-抗毒素(TA)系统主要存在于原核生物中,由毒素及其等效的抗毒素基因组成。YefM-YoeB 模块是一个 II 型 TA 系统,其中 YoeB 毒素在激活后可作为一种假定的 mRNA 干扰素发挥作用,而 YefM 抗毒素则通过与 YoeB 一起结合到其启动子区域来发挥转录抑制作用。本研究测定了肺炎双球菌 TIGR4 中 YefM-YoeB 复合物的晶体结构,以了解 TA 系统的结合机制。此外,我们还进行了体外核糖核酸酶活性测定,以确定 YoeB 毒素的核糖核酸酶活性。此外,还研究了 YefM-YoeB 复合物在溶液中的寡聚状态,并提出了 DNA 结合模式。这些对 YefM-YoeB 复合物结构和功能的深入研究可为开发针对肺炎双球菌相关疾病的新型抗生素提供有价值的信息。
{"title":"Structural and Functional Insight Into YefM–YoeB Complex of Toxin–Antitoxin System From Streptococcus pneumoniae","authors":"Do-Hee Kim,&nbsp;Yong-Chan Lee,&nbsp;Chenglong Jin,&nbsp;Sung-Min Kang,&nbsp;Su-Jin Kang,&nbsp;Hoon-Seok Kang,&nbsp;Bong-Jin Lee","doi":"10.1002/jcb.30672","DOIUrl":"10.1002/jcb.30672","url":null,"abstract":"<div>\u0000 \u0000 <p><i>Streptococcus pneumonia</i> is a Gram-positive and facultative anaerobic bacterium that causes a number of diseases, including otitis media, community-acquired pneumonia, sepsis, and meningitis. With the emergence of antibiotic-resistant strains, there is an urgent need to develop antibiotics with a novel mechanism. The toxin–antitoxin (TA) system, which is primarily found in prokaryotes, consists of a toxin and its equivalent antitoxin genes. The YefM–YoeB module is a Type II TA system, where the YoeB toxin functions as a putative mRNA interferase upon activation, while the YefM antitoxin acts as a transcription repressor by binding to its promoter region along with YoeB. In this study, we determined the crystal structure of the YefM–YoeB complex from <i>S</i>. <i>pneumoniae</i> TIGR4 to comprehend the binding mechanism of the TA system. Furthermore, an in vitro ribonuclease activity assay was conducted to identify the ribonuclease activity of the YoeB toxin. Additionally, furthermore, the oligomeric state of the YefM–YoeB complex in solution was investigated, and a DNA-binding mode was proposed. These structural and functional insights into the YefM–YoeB complex could provide valuable information for the development of novel antibiotics targeting <i>S</i>. <i>pneumonia</i>-associated diseases.</p></div>","PeriodicalId":15219,"journal":{"name":"Journal of cellular biochemistry","volume":"126 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142620473","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
RETRACTION: Downregulation of Fibroblast Growth Factor 5 Inhibits Cell Growth and Invasion of Human Nonsmall-Cell Lung Cancer Cells 回归:下调成纤维细胞生长因子 5 可抑制人类非小细胞肺癌细胞的生长和侵袭。
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-08 DOI: 10.1002/jcb.30673

RETRACTION: Y. Zhou, Q. Yu, Y. Chu, X. Zhu, J. Deng, Q. Liu, Q. Wang, “Downregulation of Fibroblast Growth Factor 5 Inhibits Cell Growth and Invasion of Human Nonsmall-Cell Lung Cancer Cells,” Journal of Cellular Biochemistry 120, no. 5 (2019): 8238-8246. https://doi.org/10.1002/jcb.28107.

The above article, published online on 05 December 2018, in Wiley Online Library (wileyonlinelibrary.com), and has been retracted by agreement between the journal Editor-in-Chief, Christian Behl; and Wiley Periodicals LLC. The journal received notice from a third party regarding multiple images in this article which were published in other journals by different author groups, in which image was used in a different scientific context. The publisher confirmed that there is also duplication of images within Figure 3A of this article. The retraction has been agreed to because the evidence of image duplications both within this article and between different articles, each of which describes different experimental conditions, fundamentally compromises the conclusions presented in this article. The authors agree with the retraction.

引用本文:周艳,于琪,褚艳,朱晓霞,邓军,刘琪,王琪,“成纤维细胞生长因子5的下调对人非小细胞肺癌细胞生长和侵袭的抑制作用”,《细胞生物化学》第120期,第2期。5(2019): 8238-8246。https://doi.org/10.1002/jcb.28107.The以上文章于2018年12月5日在线发表在Wiley在线图书馆(wileyonlinelibrary.com)上,经期刊主编Christian Behl;和Wiley期刊有限责任公司。该期刊收到来自第三方的通知,涉及本文中由不同作者小组发表在其他期刊上的多幅图像,其中图像用于不同的科学背景。发布者确认在本文的图3A中也存在重复的图像。我们同意撤稿,因为这篇文章和不同文章之间的图像重复的证据,每一篇文章都描述了不同的实验条件,从根本上损害了这篇文章提出的结论。作者同意撤稿。
{"title":"RETRACTION: Downregulation of Fibroblast Growth Factor 5 Inhibits Cell Growth and Invasion of Human Nonsmall-Cell Lung Cancer Cells","authors":"","doi":"10.1002/jcb.30673","DOIUrl":"10.1002/jcb.30673","url":null,"abstract":"<p><b>RETRACTION:</b> Y. Zhou, Q. Yu, Y. Chu, X. Zhu, J. Deng, Q. Liu, Q. Wang, “Downregulation of Fibroblast Growth Factor 5 Inhibits Cell Growth and Invasion of Human Nonsmall-Cell Lung Cancer Cells,” <i>Journal of Cellular Biochemistry</i> 120, no. 5 (2019): 8238-8246. https://doi.org/10.1002/jcb.28107.</p><p>The above article, published online on 05 December 2018, in Wiley Online Library (wileyonlinelibrary.com), and has been retracted by agreement between the journal Editor-in-Chief, Christian Behl; and Wiley Periodicals LLC. The journal received notice from a third party regarding multiple images in this article which were published in other journals by different author groups, in which image was used in a different scientific context. The publisher confirmed that there is also duplication of images within Figure 3A of this article. The retraction has been agreed to because the evidence of image duplications both within this article and between different articles, each of which describes different experimental conditions, fundamentally compromises the conclusions presented in this article. The authors agree with the retraction.</p>","PeriodicalId":15219,"journal":{"name":"Journal of cellular biochemistry","volume":"125 12","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-11-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jcb.30673","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142603299","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Effects and Mechanisms of Chrysosplenetin in Targeting RANKL-Induced NF-κB Signaling and NFATc1 Activation to Protect Bone Density in Osteolytic Diseases 金丝桃素靶向 RANKL 诱导的 NF-κB 信号和 NFATc1 激活以保护骨溶解性疾病患者骨密度的作用和机制
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.1002/jcb.30670
Guoju Hong, Lin Zhou, Wei He, Qiushi Wei, Jiake Xu

Chrysosplenetin (CHR), an O-methylated flavonol from Chamomilla recutita and Laggera pterodonta, has previously demonstrated efficacy in enhancing osteoblast differentiation for treating postmenopausal osteoporosis. This study aims to evaluate CHR's potential to inhibit osteoclastogenesis and prevent bone deterioration in both in vitro and in vivo models. Using tartaric acid-resistant acid phosphatase staining and hydroxyapatite resorption assays, we examined the impact of CHR on RANKL-induced osteoclasts derived from mouse bone marrow monocytes. Additionally, Western blot analysis and qRT-PCR were utilized to assess the protein and gene expressions within the MAPK and NF-κB signaling pathways, as well as the NFATc1 pathway. In vivo, CHR's effects were validated using micro-CT and histomorphometry in an ovariectomized mouse model, showing significant reduction in osteoclast activity and bone loss. The study confirms CHR's inhibition of osteoclastogenesis through interference with RANKL-mediated signaling pathways, suggesting its potential as a novel therapeutic agent for osteolytic conditions related to osteoclast-osteoblast dysregulation.

Chrysosplenetin (CHR) 是一种取自 Chamomilla recutita 和 Laggera pterodonta 的 O-甲基化黄酮醇,曾被证实具有增强成骨细胞分化的功效,可用于治疗绝经后骨质疏松症。本研究旨在评估 CHR 在体外和体内模型中抑制破骨细胞生成和防止骨质退化的潜力。我们使用酒石酸抗酸性磷酸酶染色法和羟基磷灰石吸收测定法,研究了 CHR 对小鼠骨髓单核细胞 RANKL 诱导的破骨细胞的影响。此外,我们还利用 Western 印迹分析和 qRT-PCR 评估了 MAPK 和 NF-κB 信号通路以及 NFATc1 通路中的蛋白质和基因表达。在体内,在卵巢切除的小鼠模型中使用显微 CT 和组织形态测量法验证了 CHR 的效果,结果显示破骨细胞活性和骨质流失显著减少。研究证实,CHR 可通过干扰 RANKL 介导的信号通路抑制破骨细胞的生成,这表明它有望成为一种新型治疗药物,用于治疗与破骨细胞-成骨细胞失调有关的溶骨性疾病。
{"title":"The Effects and Mechanisms of Chrysosplenetin in Targeting RANKL-Induced NF-κB Signaling and NFATc1 Activation to Protect Bone Density in Osteolytic Diseases","authors":"Guoju Hong,&nbsp;Lin Zhou,&nbsp;Wei He,&nbsp;Qiushi Wei,&nbsp;Jiake Xu","doi":"10.1002/jcb.30670","DOIUrl":"10.1002/jcb.30670","url":null,"abstract":"<div>\u0000 \u0000 <p>Chrysosplenetin (CHR), an O-methylated flavonol from <i>Chamomilla recutita</i> and <i>Laggera pterodonta</i>, has previously demonstrated efficacy in enhancing osteoblast differentiation for treating postmenopausal osteoporosis. This study aims to evaluate CHR's potential to inhibit osteoclastogenesis and prevent bone deterioration in both in vitro and in vivo models. Using tartaric acid-resistant acid phosphatase staining and hydroxyapatite resorption assays, we examined the impact of CHR on RANKL-induced osteoclasts derived from mouse bone marrow monocytes. Additionally, Western blot analysis and qRT-PCR were utilized to assess the protein and gene expressions within the MAPK and NF-κB signaling pathways, as well as the NFATc1 pathway. In vivo, CHR's effects were validated using micro-CT and histomorphometry in an ovariectomized mouse model, showing significant reduction in osteoclast activity and bone loss. The study confirms CHR's inhibition of osteoclastogenesis through interference with RANKL-mediated signaling pathways, suggesting its potential as a novel therapeutic agent for osteolytic conditions related to osteoclast-osteoblast dysregulation.</p>\u0000 </div>","PeriodicalId":15219,"journal":{"name":"Journal of cellular biochemistry","volume":"126 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142557922","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Role of Sodium-Dependent Vitamin C Transporter-2 and Ascorbate in Regulating the Hypoxic Pathway in Cultured Glioblastoma Cells 钠依赖性维生素 C 转运体-2 和抗坏血酸在调节培养胶质母细胞瘤细胞缺氧途径中的作用
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-09 DOI: 10.1002/jcb.30658
Eleanor R. Burgess, Citra Praditi, Elisabeth Phillips, Margreet C. M. Vissers, Bridget A. Robinson, Gabi U. Dachs, George A. R. Wiggins

The most common and aggressive brain cancer, glioblastoma, is characterized by hypoxia and poor survival. The pro-tumour transcription factor, hypoxia-inducible factor (HIF), is regulated via HIF-hydroxylases that require ascorbate as cofactor. Decreased HIF-hydroxylase activity triggers the hypoxic pathway driving cancer progression. Tissue ascorbate accumulates via the sodium-dependent vitamin C transporter-2 (SVCT2). We hypothesize that glioblastoma cells rely on SVCT2 for ascorbate accumulation, and that knockout of this transporter would disrupt the regulation of the hypoxic pathway by ascorbate. Ascorbate uptake was measured in glioblastoma cell lines (U87MG, U251MG, T98G) by high-performance liquid chromatography. CRISPR/Cas9 was used to knockout SVCT2. Cells were treated with cobalt chloride, desferrioxamine or 5% oxygen, with/without ascorbate, and key hypoxic pathway proteins were measured using Western blot analysis. Ascorbate uptake was cell line dependent, ranging from 1.7 to 11.0 nmol/106 cells. SVCT2-knockout cells accumulated 90%–95% less intracellular ascorbate than parental cells. The hypoxic pathway was induced by all three stimuli, and ascorbate reduced this induction. In the SVCT2-knockout cells, ascorbate had limited effect on the hypoxic pathway. This study verifies that intracellular ascorbate is required to suppress the hypoxic pathway. As patient survival is related to an activated hypoxic pathway, increasing intra-tumoral ascorbate may be of clinical interest.

胶质母细胞瘤是最常见的侵袭性脑癌,其特点是缺氧和生存率低。促肿瘤转录因子--缺氧诱导因子(HIF)通过 HIF-hydroxylases 调节,而 HIF-hydroxylases 需要抗坏血酸作为辅助因子。HIF-hydroxylase 活性的降低会引发缺氧途径,从而推动癌症的发展。组织中的抗坏血酸通过钠依赖性维生素 C 转运体-2(SVCT2)积累。我们假设胶质母细胞瘤细胞依赖 SVCT2 来积累抗坏血酸,而敲除该转运体将破坏抗坏血酸对缺氧途径的调节。通过高效液相色谱法测量了胶质母细胞瘤细胞系(U87MG、U251MG、T98G)对抗坏血酸的吸收。使用 CRISPR/Cas9 基因敲除 SVCT2。用氯化钴、去铁胺或 5%的氧气(含/不含抗坏血酸)处理细胞,并通过 Western 印迹分析测定缺氧通路的关键蛋白。抗坏血酸的吸收与细胞系有关,范围从1.7到11.0 nmol/106个细胞。与亲代细胞相比,SVCT2-基因敲除细胞积累的细胞内抗坏血酸减少了90%-95%。三种刺激都会诱导缺氧通路,而抗坏血酸会减少这种诱导。在 SVCT2 基因敲除的细胞中,抗坏血酸对缺氧通路的影响有限。这项研究验证了抑制缺氧通路需要细胞内的抗坏血酸。由于患者的存活与缺氧通路的激活有关,因此增加瘤内抗坏血酸可能具有临床意义。
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Journal of cellular biochemistry
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