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Synthesis of Pyrazolo[3,4-b]pyridine Derivatives and Their In-Vitro and In-Silico Antidiabetic Activities. 吡唑并[3,4-b]吡啶衍生物的合成及其体外和体内抗糖尿病活性。
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-09-06 DOI: 10.1002/jcb.30646
Iqra Rafique, Tahir Maqbool, Muhammad Salman Javed

In the current study, new pyrazolo[3,4-b]pyridine esters, hydrazides, and Schiff bases have been synthesized starting from 3-methyl-1-phenyl-1H-pyrazol-5-amine. The first step involved solvent-free synthesis of pyrazolo[3,4-b]pyridine-6-carboxylate derivatives (2a-d) with 55%-70% yield in the minimum time frame compared with the conventional refluxing method, which was followed by the synthesis of corresponding hydrazides (3a-d) and hydrazones (4a-e). The structures of the synthesized derivatives were confirmed using element analysis, FT-IR, 1H NMR, 13C NMR, and LC-MS techniques. Synthesized hydrazides (3a-d) and hydrazones (4a-e) were also tested for their in-vitro antidiabetic activity and found that all the compounds exhibited significant antidiabetic activity, while 3c (IC50 = 9.6 ± 0.5 μM) among the hydrazides and 4c (IC50 = 13.9 ± 0.7 μM) among the hydrazones were found to be more active in comparison to other synthesized derivatives. These in-vitro results were further validated via docking studies against the α-amylase enzyme using the reference drug acarbose (200.1 ± 10.0 μM). The results were greatly in agreement with their in-vitro studies and these derivatives can be encouraging candidates for further in-vivo studies in mice models.

本研究以 3-甲基-1-苯基-1H-吡唑-5-胺为起点,合成了新的吡唑并[3,4-b]吡啶酯、酰肼和希夫碱。第一步是无溶剂合成吡唑并[3,4-b]吡啶-6-羧酸酯衍生物(2a-d),与传统的回流法相比,在最短的时间内获得了 55%-70% 的产率,随后合成了相应的酰肼(3a-d)和酰肼酮(4a-e)。利用元素分析、傅立叶变换红外光谱、1H NMR、13C NMR 和 LC-MS 技术确认了合成衍生物的结构。还对合成的酰肼(3a-d)和酰肼(4a-e)进行了体外抗糖尿病活性测试,结果发现所有化合物都具有显著的抗糖尿病活性,而与其他合成衍生物相比,酰肼中的 3c(IC50 = 9.6 ± 0.5 μM)和酰肼中的 4c(IC50 = 13.9 ± 0.7 μM)活性更高。这些体外研究结果通过使用参考药物阿卡波糖(200.1 ± 10.0 μM)与α-淀粉酶的对接研究得到了进一步验证。研究结果与体外研究结果十分吻合,这些衍生物有望在小鼠模型中进行进一步的体内研究。
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引用次数: 0
Molecular insights into the antioxidant and anticancer properties: A comprehensive analysis through molecular modeling, docking, and dynamics studies. 抗氧化和抗癌特性的分子见解:通过分子建模、对接和动力学研究进行综合分析。
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-05-15 DOI: 10.1002/jcb.30564
Hamza Serina Banu, Ismail Sheriff Parvin, Subramanian Deepika Priyadharshini, Ekambaram Gayathiri, Palanisamy Prakash, Thangaraj Pratheep

Plants are rich sources of therapeutic compounds that often lack the side effects commonly found in synthetic chemicals. Researchers have effectively synthesized pharmaceuticals from natural sources, taking inspiration from traditional medicine, in their pursuit of modern drugs. This study aims to evaluate the phenolic and flavonoid content of Solanum virginianum seeds using different solvent extracts, enzymatic assays including 2,2-diphenyl-1-picrylhydrazyl activity, reducing power, and superoxide activity. Our phytochemical screening identified active compounds, such as phenols, flavonoids, tannins, and alkaloids. The methanol extract notably possesses higher levels of total phenolic and flavonoid content in comparison to the other extracts. The results highlight the superior antioxidant activity of methanol-extracted leaves, demonstrated by their exceptional IC50 values, which surpass the established standard. In this study, molecular docking techniques were used to assess the binding affinity and to predict the binding conformation of the compounds. Quercetin 3-O beta-d-galactopyranoside displayed a binding energy of -8.35 kcal/mol with several important amino acid residues, PHE222, TRP440, ILE184, LEU192, VAL221, LEU218, SER185, and ALA188. Kaempferol 3-O-beta-l-glucopyranoside exhibited a binding energy of -8.33 kcal/mol, interacting with specific amino acid residues including ALA 441, VAL318, VAL322, MET307, ILI409, GLY442, and PHE439. The results indicate that the methanol extract has a distinct composition of biologically active constituents compared to the other extracts. Overall, seeds exhibit promise as natural antioxidants and potential agents for combating cancer. This study highlights the significance of utilizing the therapeutic capabilities of natural compounds and enhancing our comprehension of their pharmacological characteristics.

植物是治疗化合物的丰富来源,通常没有合成化学品常见的副作用。研究人员从传统医学中汲取灵感,有效地从天然资源中合成了药物,以开发现代药物。本研究旨在利用不同的溶剂提取物、酶测定法(包括 2,2-二苯基-1-苦基肼活性、还原力和超氧化物活性)评估茄属植物种子的酚类和类黄酮含量。我们的植物化学筛选确定了酚类、黄酮类、单宁酸和生物碱等活性化合物。与其他提取物相比,甲醇提取物的总酚和类黄酮含量明显更高。结果表明,甲醇提取物叶片的抗氧化活性更强,其 IC50 值超过了既定标准。本研究采用分子对接技术来评估化合物的结合亲和力并预测其结合构象。槲皮素 3-O beta- d-吡喃半乳糖苷与几个重要氨基酸残基 PHE222、TRP440、ILE184、LEU192、VAL221、LEU218、SER185 和 ALA188 的结合能为 -8.35 kcal/mol。堪非醇 3-O-beta-l-吡喃葡萄糖苷与特定氨基酸残基(包括 ALA 441、VAL318、VAL322、MET307、ILI409、GLY442 和 PHE439)的结合能为 -8.33 kcal/mol。结果表明,与其他提取物相比,甲醇提取物具有独特的生物活性成分。总之,种子有望成为天然抗氧化剂和潜在的抗癌剂。这项研究强调了利用天然化合物的治疗能力和提高我们对其药理特性的理解的重要性。
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引用次数: 0
Dehydrocostus Lactone Ameliorates LPS-Induced Acute Lung Injury by Inhibiting PFKFB3-Mediated Glycolysis. 脱氢木香烃内酯通过抑制 PFKFB3 介导的糖酵解改善 LPS 诱导的急性肺损伤
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-08-15 DOI: 10.1002/jcb.30639
Yue Li, Xinrui Wang, Lirong Zhao, Boyu Pan, Xiao Xu, Dongrong Zhu

Acute lung injury (ALI) is a destructive respiratory disease characterized by alveolar structural destruction and excessive inflammation responses. Aerobic glycolysis of macrophages plays a crucial role in the pathophysiology of ALI. Previous studies have shown that the expression of the key rate-limiting enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 (PFKFB3) in inflammatory cells is significantly increased, which promotes an increase in the rate of glycolysis in inflammatory cells. However, little is known about the biological functions of PFKFB3 in macrophage inflammation and ALI. In this study, we identified that PFKFB3 is markedly increased in lipopolysaccharide (LPS)-induced ALI mice and macrophages. Knockdown of pfkfb3 attenuated LPS-induced glycolytic flux, decreased the release of pro-inflammatory cytokines, and inactivated NF-κB signaling pathway in macrophages. Subsequently, we found that dehydrocostus lactone (DL), a natural sesquiterpene lactone, significantly decreased both the mRNA and protein levels of PFKFB3. Furthermore, it reduced the release of inflammatory cytokines and inactivated NF-κB pathways in vitro. Accordingly, DL alleviated LPS-induced pulmonary edema and reduced the infiltration of inflammatory cells in mouse lung tissue. In summary, our study reveals the vital role of PFKFB3 in LPS-induced inflammation and discovers a novel molecular mechanism underlying DL's protective effects on ALI.

急性肺损伤(ALI)是一种以肺泡结构破坏和过度炎症反应为特征的破坏性呼吸系统疾病。巨噬细胞的有氧糖酵解在 ALI 的病理生理学中起着至关重要的作用。以往的研究表明,炎症细胞中关键的限速酶 6-磷酸果糖-2-激酶/果糖-2,6-二磷酸酶 3(PFKFB3)的表达量显著增加,从而促进了炎症细胞中糖酵解速率的增加。然而,人们对 PFKFB3 在巨噬细胞炎症和 ALI 中的生物学功能知之甚少。在这项研究中,我们发现 PFKFB3 在脂多糖(LPS)诱导的 ALI 小鼠和巨噬细胞中明显增加。敲除 pfkfb3 可减轻 LPS 诱导的糖酵解通量,减少促炎细胞因子的释放,并使巨噬细胞中的 NF-κB 信号通路失活。随后,我们发现天然倍半萜内酯脱氢木内酯(DL)能显著降低 PFKFB3 的 mRNA 和蛋白水平。此外,它还减少了炎症细胞因子的释放,并使体外 NF-κB 通路失活。因此,DL 可减轻 LPS 诱导的肺水肿,并减少小鼠肺组织中炎性细胞的浸润。总之,我们的研究揭示了 PFKFB3 在 LPS 诱导的炎症中的重要作用,并发现了 DL 对 ALI 具有保护作用的新分子机制。
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引用次数: 0
The long noncoding RNA TPTE2P1 promotes the viability of colorectal cancer cells. 长非编码 RNA TPTE2P1 可提高结直肠癌细胞的活力。
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-04-01 DOI: 10.1002/jcb.30546
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引用次数: 0
Mechanisms of Sigma-2/TMEM97 Involvement in Cholesterol Metabolism. Sigma-2/TMEM97 参与胆固醇代谢的机制
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-09-20 DOI: 10.1002/jcb.30645
Martina Parente, Claudia Tonini, Sara Caputo, Marco Fiocchetti, Valentina Pallottini

Extensive research has focused on cellular cholesterol and its regulation, primarily due to its crucial physiological roles and its association with numerous diseases resulting from dysregulated homeostasis. Consequently, investigating cholesterol metabolism and the network of regulating proteins remains an ongoing challenge for biomedical research seeking new molecular targets to manage aberrant cholesterol levels in pathologic conditions. There is evidence that Sigma-2/TMEM97 receptor regulates cholesterol metabolism. However, the mechanisms remain incompletely understood to date. Therefore, this study aimed to employ a pharmacological approach based on selective Sigma-2/TMEM97 agonists, rimcazole and siramesine, to uncover the contribution of this receptor to cholesterol homeostasis. Our results indicate that Sigma-2/TMEM97 activation modulates cholesterol uptake by altering key proteins involved in, leading to free cholesterol and neutral lipids accumulation. This sheds light on potential mechanisms implied, contributing a new piece to the intricate puzzle of cholesterol metabolism homeostasis.

大量研究集中于细胞胆固醇及其调控,这主要是因为胆固醇具有重要的生理作用,而且与平衡失调导致的多种疾病有关。因此,研究胆固醇代谢和调节蛋白网络仍然是生物医学研究的一项持续挑战,以寻找新的分子靶点来控制病理状态下的异常胆固醇水平。有证据表明,Sigma-2/TMEM97 受体能调节胆固醇代谢。然而,迄今为止,人们对其机制仍不完全了解。因此,本研究旨在采用一种基于选择性 Sigma-2/TMEM97 激动剂(利咪唑和西拉美辛)的药理学方法来揭示该受体对胆固醇平衡的贡献。我们的研究结果表明,Sigma-2/TMEM97 的激活可通过改变参与胆固醇摄取的关键蛋白来调节胆固醇摄取,从而导致游离胆固醇和中性脂质的积累。这揭示了其中隐含的潜在机制,为胆固醇代谢稳态的复杂谜团提供了新的线索。
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引用次数: 0
RETRACTION: Silencing of HAS2-AS1 Mediates PI3K/AKT Signaling Pathway to Inhibit Cell Proliferation, Migration, and Invasion in Glioma. 回归:抑制 HAS2-AS1 通过 PI3K/AKT 信号通路抑制胶质瘤的细胞增殖、迁移和侵袭。
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-30 DOI: 10.1002/jcb.30650
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引用次数: 0
EXPRESSION OF CONCERN: Ap1 Mediates uPA/uPAR Induced FUT4 Expression and Trophoblast Invasion. 表达关切:Ap1 介导 uPA/uPAR 诱导的 FUT4 表达和滋养层母细胞侵袭。
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-30 DOI: 10.1002/jcb.30657
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引用次数: 0
A Novel Assay Reveals the Early Setting-Up of Membrane Repair Machinery in Human Skeletal Muscle Cells. 揭示人类骨骼肌细胞膜修复机制早期设置的新型检测方法
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-30 DOI: 10.1002/jcb.30662
Léna d'Agata, Phoebe Rassinoux, Céline Gounou, Flora Bouvet, Dounia Bouragba, Kamel Mamchaoui, Anthony Bouter

Defect in membrane repair contributes to the development of muscular dystrophies such as limb girdle muscular dystrophy (LGMD) type R2 or R12. Nevertheless, many other muscular dystrophies may also result from a defect in this process. Identifying these pathologies requires the development of specific methods to inflict sarcolemma damage on a large number of cells and rapidly analyze their response. We adapted a protocol hitherto used to study the behavior of cancer cells to mechanical constraint. This method is based on forcing the passage of cells through a thin needle, which induces shear stress. Due to size considerations, this method requires working with mononuclear muscle cells instead of myotubes or muscle fibers. Although functional sarcolemma repair was thought to be restricted to myotubes and muscle fibers, we show here that 24h-differentiated myoblasts express a complete machinery capable of addressing membrane damage. At this stage, muscle cells do not yet form myotubes, revealing that the membrane repair machinery is set up early throughout the differentiation process. When submitted to the shear-stress assay, these cells were observed to repair membrane damage in a Ca2+-dependent manner, as previously reported. We show that this technique is able to identify the absence of membrane resealing in muscle cells from patient suffering from LGMDR2. The proposed technique provides therefore a suitable method for identifying cellular dysregulations in membrane repair of dystrophic human muscle cells.

膜修复缺陷是肢腰肌营养不良症(LGMD)R2 型或 R12 型等肌肉萎缩症的发病原因。然而,许多其他肌肉萎缩症也可能是这一过程中的缺陷造成的。鉴别这些病症需要开发特定的方法,对大量细胞造成肌浆损伤,并快速分析它们的反应。我们对迄今为止用于研究癌细胞在机械约束下行为的方案进行了调整。这种方法的基础是迫使细胞通过细针,从而产生剪切应力。出于体积的考虑,这种方法需要使用单核肌肉细胞,而不是肌管或肌纤维。尽管功能性肌膜修复被认为仅限于肌管和肌纤维,但我们在此展示了 24 小时分化的肌母细胞表达的能够处理膜损伤的完整机制。在这一阶段,肌肉细胞尚未形成肌管,这表明膜修复机制在整个分化过程中很早就建立起来了。在进行剪切应力试验时,观察到这些细胞以 Ca2+ 依赖性方式修复膜损伤,这与之前的报道相同。我们的研究表明,这种技术能够识别 LGMDR2 患者肌肉细胞中膜再愈合功能的缺失。因此,所提出的技术提供了一种合适的方法,可用于鉴别肌营养不良人类肌肉细胞膜修复过程中的细胞失调。
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引用次数: 0
Assessing the Inhibitory Potential of Pregnenolone Sulfate on Pentraxin 3 in Diabetic Kidney Disease: A Molecular Docking and Simulation Study. 评估孕烯醇酮硫酸盐对糖尿病肾病五肽 3 的抑制潜力:分子对接和模拟研究。
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-30 DOI: 10.1002/jcb.30661
Soumik Das, Gnanasambandan Ramanathan

Diabetic Kidney Disease (DKD), a frequent consequence of diabetes, has substantial implications for both morbidity and mortality rates, prompting the exploration of new metabolic biomarkers due to limitations in current methods like creatinine and albumin measurements. Pentraxin 3 (PTX3) shows promise for assessing renal inflammation in DKD. This study investigates how DKD metabolites could influence PTX3 expression through molecular docking, ADMET profiling, and dynamic simulation. Network and pathway analyses were conducted to explore metabolite interactions with DKD genes and their contributions to DKD pathogenesis. Thirty-three DKD-associated metabolites were screened, using pentoxifylline (PEN) as a reference. The pharmacokinetic properties of these compounds were evaluated through molecular docking and ADMET profiling. Molecular dynamics simulations over 200 ns assessed the stability of PTX3 (apo), the PRE-PTX3 complex, and PEN-PTX3 across multiple parameters. Cytoscape identified 1082 nodes and 1381 edges linking metabolites with DKD genes. KEGG pathway analysis underscored PTX3's role in inflammation. Molecular docking revealed pregnenolone sulfate (PRE) with the highest binding affinity (-6.25 kcal/mol), followed by hydrocortisone (-6.03 kcal/mol) and 2-arachidonoylglycerol (-5.92 kcal/mol), compared to PEN (-5.35 kcal/mol). ADMET profiling selected PRE for dynamic simulation alongside PEN. Analysis of RMSD, RMSF, RG, SASA, H-bond, PCA, FEL, and MM-PBSA indicated stable complex behavior over time. Our findings suggest that increasing PRE levels could be beneficial in managing DKD, potentially through isolating PRE from fungal sources, synthesizing it as dietary supplements, or enhancing endogenous PRE synthesis within the body.

糖尿病肾病(DKD)是糖尿病的一种常见后果,对发病率和死亡率都有很大影响,由于肌酐和白蛋白测量等现有方法的局限性,促使人们探索新的代谢生物标志物。五羟色胺 3 (PTX3) 在评估 DKD 肾脏炎症方面显示出前景。本研究通过分子对接、ADMET 分析和动态模拟,研究了 DKD 代谢物如何影响 PTX3 的表达。研究还进行了网络和通路分析,以探索代谢物与 DKD 基因的相互作用及其对 DKD 发病机制的贡献。以戊乙福林(PEN)为参照物,筛选出了 33 种与 DKD 相关的代谢物。通过分子对接和 ADMET 分析评估了这些化合物的药代动力学特性。超过 200 ns 的分子动力学模拟评估了 PTX3(apo)、PRE-PTX3 复合物和 PEN-PTX3 在多个参数下的稳定性。Cytoscape 确定了 1082 个节点和 1381 条边,将代谢物与 DKD 基因联系起来。KEGG 通路分析强调了 PTX3 在炎症中的作用。分子对接显示硫酸孕烯醇酮(PRE)的结合亲和力最高(-6.25 kcal/mol),其次是氢化可的松(-6.03 kcal/mol)和 2-阿achidonoylglycerol(-5.92 kcal/mol),而 PEN 的结合亲和力为-5.35 kcal/mol。ADMET 分析选择 PRE 与 PEN 一起进行动态模拟。对 RMSD、RMSF、RG、SASA、H-键、PCA、FEL 和 MM-PBSA 的分析表明,随着时间的推移,复合物行为趋于稳定。我们的研究结果表明,通过从真菌中分离出 PRE、将其合成为膳食补充剂或增强体内内源性 PRE 的合成,提高 PRE 的水平可能对控制 DKD 有益。
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引用次数: 0
Septins: Structural Insights, Functional Dynamics, and Implications in Health and Disease. 七叶树蛋白:结构见解、功能动态以及对健康和疾病的影响。
IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-26 DOI: 10.1002/jcb.30660
Aurosikha Das, Ambarish Kunwar

Septins are a class of proteins with diverse and vital roles in cell biology. Structurally, they form hetero-oligomeric complexes and assemble into filaments, contributing to the organization of cells. These filaments act as scaffolds, aiding in processes like membrane remodeling, cytokinesis, and cell motility. Functionally, septins are essential to cell division, playing essential roles in cytokinetic furrow formation and maintaining the structural integrity of the contractile ring. They also regulate membrane trafficking and help organize intracellular organelles. In terms of physiology, septins facilitate cell migration, phagocytosis, and immune responses by maintaining membrane integrity and influencing cytoskeletal dynamics. Septin dysfunction is associated with pathophysiological conditions. Mutations in septin genes have been linked to neurodegenerative diseases, such as hereditary spastic paraplegias, underscoring their significance in neuronal function. Septins also play a role in cancer and infectious diseases, making them potential targets for therapeutic interventions. Septins serve as pivotal components of intracellular signaling networks, engaging with diverse proteins like kinases and phosphatases. By modulating the activity of these molecules, septins regulate vital cellular pathways. This integral role in signaling makes septins central to orchestrating cellular responses to environmental stimuli. This review mainly focuses on the human septins, their structural composition, regulatory functions, and implication in pathophysiological conditions underscores their importance in fundamental cellular biology. Moreover, their potential as therapeutic targets across various diseases further emphasizes their significance.

赛普特蛋白是一类在细胞生物学中具有多种重要作用的蛋白质。从结构上看,它们形成异构体复合物并组装成细丝,有助于细胞的组织。这些细丝就像支架一样,有助于膜重塑、细胞分裂和细胞运动等过程。在功能上,隔膜蛋白对细胞分裂至关重要,在细胞运动沟的形成和维持收缩环的结构完整性方面发挥着重要作用。它们还能调节膜贩运,帮助组织细胞内的细胞器。在生理学方面,隔蛋白通过维持膜完整性和影响细胞骨架动力学,促进细胞迁移、吞噬和免疫反应。隔蛋白功能障碍与病理生理状况有关。隔蛋白基因突变与神经退行性疾病(如遗传性痉挛性截瘫)有关,这突出表明了隔蛋白在神经元功能中的重要作用。隔蛋白还在癌症和传染病中发挥作用,使其成为潜在的治疗干预目标。七联蛋白是细胞内信号网络的关键组成部分,与激酶和磷酸酶等多种蛋白质相互作用。通过调节这些分子的活性,隔膜调节重要的细胞通路。隔膜蛋白在信号传递中的这种不可或缺的作用使其成为协调细胞对环境刺激做出反应的核心。这篇综述主要关注人类隔膜,它们的结构组成、调控功能以及在病理生理条件下的影响突出了它们在基础细胞生物学中的重要性。此外,它们作为各种疾病治疗靶点的潜力也进一步强调了它们的重要性。
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引用次数: 0
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Journal of cellular biochemistry
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