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Illuminating the brain: Revealing brain biochemistry with synchrotron X-ray spectromicroscopy 照亮大脑:用同步加速器x射线光谱显微镜揭示大脑生物化学
IF 1.9 4区 物理与天体物理 Q2 SPECTROSCOPY Pub Date : 2023-07-01 DOI: 10.1016/j.elspec.2023.147355
James Everett , Jake Brooks , Frederik Lermyte , Vindy Tjendana Tjhin , Ian Hands-Portman , Emily Hill , Joanna F. Collingwood , Neil D. Telling

The synchrotron x-ray spectromicroscopy technique Scanning Transmission X-ray Microscopy (STXM) offers a powerful means to examine the underlying biochemistry of biological systems, owing to its combined chemical sensitivity and nanoscale spatial resolution. Here we introduce and demonstrate methodology for the use of STXM to examine the biochemistry of the human brain. We then discuss how this approach can help us better understand the biochemical changes that occur during the development of degenerative brain disorders, potentially facilitating the development of new therapies for disease diagnosis and treatment.

扫描透射x射线显微镜技术(STXM)提供了一种强大的手段来检查生物系统的潜在生物化学,由于其结合了化学灵敏度和纳米级的空间分辨率。在这里,我们介绍并演示了使用STXM检查人脑生物化学的方法。然后,我们讨论了这种方法如何帮助我们更好地理解退行性脑疾病发展过程中发生的生化变化,从而有可能促进疾病诊断和治疗新疗法的发展。
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引用次数: 0
Atomically dispersed Ni-N-C electrocatalysts, studied by Ni L-edge spectro-ptychography 原子分散Ni-N-C电催化剂的镍L边光谱研究
IF 1.9 4区 物理与天体物理 Q2 SPECTROSCOPY Pub Date : 2023-07-01 DOI: 10.1016/j.elspec.2023.147364
Chunyang Zhang , Jiatang Chen , Hao Yuan , Jian Wang , Tianxiao Sun , Drew Higgins , Adam P. Hitchcock

Soft X-ray spectro-ptychography of nickel-nitrogen-carbon electrocatalysts containing atomically dispersed Ni-based active sites were measured at the Ni L3 edge. Samples prepared with two different loadings of Ni precursors were investigated and compared to the results of an earlier study using scanning transmission X-ray microscopy (STXM) [Zhang et al., ACS Catalysis 12 (2022) 8746]. The ptychography data sets were measured using a defocused probe (1–3 µm). The spatial resolution was improved from ∼60 nm (STXM) to ∼20 nm (ptychography). Spectro-ptychography stacks were measured at 4 component-specific energies (4-E stack) and at many energies across the full Ni L3 edge (34-E stack). Maps of three key chemical components (Ni metal, Ni3S2, and atomically dispersed N-coordinated Ni catalyst sites) were derived by fits of suitable reference spectra to absorption signals derived from the amplitude images from ptychographic reconstruction. The spectro-ptychography 4-E and 34-E stacks gave chemical mapping similar to each other and to the earlier STXM results. The phase signals obtained from the same data set and reconstruction were also found to be analyzable using reference phase spectra extracted from the phase stack, which generated chemical maps similar to those based on ptychography amplitude data. By using a defocused probe, the radiation dose and acquisition times for spectro-ptychography are comparable to conventional STXM, but significantly improved spatial resolution was achieved. This study highlights the added value of spectro-ptychography relative to STXM for studies of electrocatalysts.

在Ni- L3边缘测量了含有原子分散Ni基活性位点的镍-氮-碳电催化剂的软x射线光谱。研究了用两种不同负载的Ni前驱体制备的样品,并将其与早期使用扫描透射x射线显微镜(STXM)的研究结果进行了比较[Zhang等人,ACS Catalysis 12(2022) 8746]。使用散焦探针(1-3µm)测量型图数据集。空间分辨率从~ 60 nm (STXM)提高到~ 20 nm (ptychography)。在4个组件特定能量(4- e堆栈)和整个Ni L3边缘的许多能量(34-E堆栈)下测量了谱图堆叠。三种关键化学成分(Ni金属,Ni3S2和原子分散的n -配位Ni催化剂位点)的图谱通过合适的参考光谱与从平面重建的振幅图像中获得的吸收信号进行拟合得到。光谱图4-E和34-E堆栈给出的化学图谱彼此相似,也与早期的STXM结果相似。从相同的数据集和重建中获得的相位信号也发现可以使用从相位堆栈中提取的参考相位谱进行分析,其生成的化学图类似于基于平面振幅数据的化学图。通过使用散焦探针,光谱型图的辐射剂量和采集时间与传统STXM相当,但显著提高了空间分辨率。这项研究突出了相对于STXM的光谱型图在电催化剂研究中的附加价值。
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引用次数: 0
A library of calcium mineral reference spectra recorded by parallel imaging using NEXAFS spectromicroscopy 利用NEXAFS光谱显微镜平行成像记录的钙矿物参考光谱库
IF 1.9 4区 物理与天体物理 Q2 SPECTROSCOPY Pub Date : 2023-07-01 DOI: 10.1016/j.elspec.2023.147361
Mette H. Rasmussen , Cherno Jaye , Daniel Fischer , Tobias Weidner

Calcium minerals are ubiquitous in geology and life chemistry. Understanding the phase and chemical state of calcium minerals is important for numerous processes including materials chemistry, hard tissue biogenesis and geological processes. Photoemission spectroscopies such as near edge X-ray absorption fine structure (NEXAFS) and scanning transmission X-ray microscopy have been instrumental in identifying and characterizing calcium minerals in all these areas. In this work, we have recorded reference spectra for a range of different calcium minerals including a series of calcium carbonates, calcium oxalates and calcium phosphates. While collections of reference spectra for several calcium minerals can be found in the literature, these spectra have been reported in different contexts using a variety of instruments. We, here, report a comprehensive list of references recorded in parallel in a single experiment by imaging an array of calcium minerals using a NEXAFS microscope. We present reference NEXAFS spectra at the calcium L-, carbon K- and oxygen K-edges.

钙矿物在地质学和生命化学中无处不在。了解钙矿物的相和化学状态对包括材料化学、硬组织生物发生和地质过程在内的许多过程都很重要。光发射光谱,如近边缘x射线吸收精细结构(NEXAFS)和扫描透射x射线显微镜,在识别和表征所有这些地区的钙矿物方面发挥了重要作用。在这项工作中,我们记录了一系列不同钙矿物的参考光谱,包括一系列碳酸钙、草酸钙和磷酸钙。虽然在文献中可以找到几种钙矿物的参考光谱,但这些光谱已经在不同的背景下使用各种仪器进行了报道。在这里,我们报告了一个综合的参考文献列表,通过使用NEXAFS显微镜对一系列钙矿物进行成像,在一个单一的实验中平行记录。我们提出了参考NEXAFS光谱在钙L-,碳K-和氧K-边。
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引用次数: 0
Developments in sample environment for a scanning transmission X-ray microscope at UVSOR-III synchrotron UVSOR-III同步加速器扫描透射x射线显微镜样品环境研究进展
IF 1.9 4区 物理与天体物理 Q2 SPECTROSCOPY Pub Date : 2023-07-01 DOI: 10.1016/j.elspec.2023.147356
Takuji Ohigashi , Nobuhiro Kosugi

The beamline, BL4U, in UVSOR-III Synchrotron is dedicated to scanning transmission X-ray microscopy (STXM) based on 2-dimensional soft X-ray absorption and has been in operation since 2013, to enable both academic and industrial users to carry out advanced chemical analysis under various sample environments. In this paper, we have summarized our major developments for the last decade; especially, expansion of the photon energy range down to the Li K-edge (55 eV), sample cryo-cooling to reduce radiation damage, 3-dimensional computer tomography, and air-free sample transfer.

UVSOR-III同步加速器中的光束线BL4U专用于基于二维软x射线吸收的扫描透射x射线显微镜(STXM),自2013年以来一直在运行,使学术和工业用户能够在各种样品环境下进行先进的化学分析。在本文中,我们总结了我们在过去十年中的主要发展;特别是光子能量范围扩展到Li k边缘(55 eV),样品低温冷却以减少辐射损伤,三维计算机断层扫描和无空气样品转移。
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引用次数: 1
Nanoscale spectromicroscopy with the full-field X-ray microscope at the BESSY II electron storage ring in the soft and tender X-ray range 在BESSY II型电子存储环的软、嫩x射线范围内,使用全场x射线显微镜进行纳米光谱显微镜
IF 1.9 4区 物理与天体物理 Q2 SPECTROSCOPY Pub Date : 2023-07-01 DOI: 10.1016/j.elspec.2023.147344
Peter Guttmann , Carla Bittencourt , Stephan Werner , Stefan Rehbein , Christoph Pratsch , Gerd Schneider

In this paper, we give an overview of the nanoscale spectromicroscopy studies performed with the full-field X-ray microscope at the BESSY II electron storage ring. We do not consider spectromicroscopy studies performed with X-ray microscopes operated at other synchrotron sources. Such studies can be found in the literature. To our knowledge, the full-field X-ray microscope at the BESSY II storage ring is the first one operating with both a plane-grating-monochromator (PGM) beamline equipped with multi-layer optics for the tender X-ray range, as well as with standard optical elements for the soft X-ray range. We discuss how this instrument has been used in various published NEXAFS-TXM studies to probe low dimensional nanostructures. This research work paves the way for understanding electronic structures approaching the atomic scale, and will thereby help in the design of tailored functional systems.

本文综述了利用全视场x射线显微镜在BESSY II型电子存储环上进行的纳米尺度光谱显微镜研究。我们不考虑在其他同步加速器源操作的x射线显微镜进行的光谱显微镜研究。这样的研究可以在文献中找到。据我们所知,BESSY II存储环上的全视野x射线显微镜是第一个同时使用平面光栅单色仪(PGM)光束线的显微镜,该光束线配备了用于软x射线范围的多层光学元件,以及用于软x射线范围的标准光学元件。我们讨论了该仪器如何在各种已发表的NEXAFS-TXM研究中用于探测低维纳米结构。这项研究工作为理解接近原子尺度的电子结构铺平了道路,并将有助于定制功能系统的设计。
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引用次数: 0
On the use of soft X-ray STXM for organic-inorganic halide perovskite photovoltaic materials 软X射线STXM在有机-无机卤化物钙钛矿光伏材料中的应用
IF 1.9 4区 物理与天体物理 Q2 SPECTROSCOPY Pub Date : 2023-07-01 DOI: 10.1016/j.elspec.2023.147358
Haeyeon Jun , Chloé Dindault , Denis Tondelier , Bernard Geffroy , Ileana Florea , Jean-Eric Bouree , Philip Schulz , Yvan Bonnassieux , Sufal Swaraj

Metal-halide perovskites are complex materials with outstanding optoelectronic properties. Thus it is of interest to analyze these materials by using every available research tool. Synchrotron tools have played an important role in fundamental and applied research for decades. Many synchrotron-based hard X-ray tools are already providing effective feedback to the perovskite solar cell (PSC) research community. With several fourth-generation light sources up and running or under development, this contribution will continue to impact every aspect of scientific advancement including PSC research. Arguably, the contribution of soft X-rays in PSC research is relatively limited. In view of the developments in the synchrotron world and the fact that a multimethod approach, combining laboratory-based techniques as well as synchrotron-based techniques, is necessary to provide constructive feedback to the PSC community we present here a collection of arguments and procedures with the aim of highlighting the use of soft X-ray scanning transmission X-ray microscopy (STXM). Some aspects of these arguments are elaborated with STXM investigation of perovskite material formamidinium-methylammonium lead iodide (FA1−xMAxPbI3).

金属卤化物钙钛矿是一种具有优异光电性能的复杂材料。因此,利用每一种可用的研究工具来分析这些材料是有意义的。几十年来,同步加速器工具在基础和应用研究中发挥了重要作用。许多基于同步加速器的硬x射线工具已经为钙钛矿太阳能电池(PSC)研究界提供了有效的反馈。随着几个第四代光源的启动和运行或正在开发中,这一贡献将继续影响科学进步的各个方面,包括PSC研究。可以说,软x射线在PSC研究中的贡献相对有限。鉴于同步加速器领域的发展,以及结合实验室技术和同步加速器技术的多方法方法为PSC社区提供建设性反馈是必要的,我们在这里提出了一系列争论和程序,目的是突出软x射线扫描透射x射线显微镜(STXM)的使用。通过对钙钛矿材料甲脒-甲基碘化铅(FA1−xMAxPbI3)的STXM研究,阐述了这些论点的某些方面。
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引用次数: 1
Soft X-ray scanning transmission microscopy as a selective probe of topical dermal drug delivery: The role of petrolatum and occlusion 软X射线扫描透射显微镜作为皮肤局部给药的选择性探针:矿脂和闭塞的作用
IF 1.9 4区 物理与天体物理 Q2 SPECTROSCOPY Pub Date : 2023-07-01 DOI: 10.1016/j.elspec.2023.147343
Gregor Germer , Takuji Ohigashi , Hayato Yuzawa , Nobuhiro Kosugi , Roman Flesch , Fiorenza Rancan , Annika Vogt , Eckart Rühl

Selective and label-free probing of drugs by scanning transmission X-ray microscopy (STXM) is applied along with hyperspectral imaging to probe topically applied drugs in human skin explants ex vivo. A comparison of data evaluation strategies is reported, which includes changes in optical density at selected photon energies in the O 1 s regime, linear combination modeling using reference spectra, as well as principal component and cluster analyses. It is shown that consistent results are obtained from linear combination modeling of reference spectra and changes in optical density. The dermal penetration of the anti-inflammatory drug rapamycin is investigated with high spatial resolution using a petrolatum-based formulation. For such well-known formulation the result of occlusion is investigated leading to drug uptake into corneocytes. Additional changes in drug penetration induced by weakening the skin barrier by the serine protease trypsin are also included. These results are discussed in comparison with the dermal penetration of other drug formulations. Finally, alternatives to present data acquisition strategies in STXM are discussed with respect to sub-sampling in combination with mathematical approaches, so that the full chemical and spatial information can be retrieved and radiation damage is minimized.

通过扫描透射x射线显微镜(STXM)对药物进行选择性和无标记探测,并结合高光谱成像,在体外对人体皮肤外植体中的局部应用药物进行探测。比较了几种数据评估策略,包括在O - 1 s谱区选择光子能量时光密度的变化、参考光谱的线性组合建模以及主成分和聚类分析。结果表明,参考光谱和光密度变化的线性组合建模得到了一致的结果。研究了抗炎药雷帕霉素在皮肤中的渗透作用,采用高空间分辨率的凡脱油为基础的配方。对于这种众所周知的配方,闭塞的结果被研究导致药物摄取到角质层细胞。还包括丝氨酸蛋白酶胰蛋白酶削弱皮肤屏障引起的药物渗透的其他变化。这些结果与其他药物制剂的皮肤渗透比较进行了讨论。最后,讨论了STXM中现有数据采集策略的替代方案,即结合数学方法进行子采样,从而可以检索完整的化学和空间信息,并将辐射损伤降至最低。
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引用次数: 0
N, O and F K-edges XAS and DFT combination for the exploration of linkage isomers of coordinated nitric oxide in a ruthenium nitrosyl complex N、 O和F K边XAS和DFT组合用于探索钌-亚硝基配合物中配位一氧化氮的键异构体
IF 1.9 4区 物理与天体物理 Q2 SPECTROSCOPY Pub Date : 2023-07-01 DOI: 10.1016/j.elspec.2023.147342
Artem Mikhailov , Tatyana Asanova , Igor Asanov , Igor Píš , Elena Magnano , Gennadiy Kostin , Dominik Schaniel

We report on the experimental investigation of single crystals of trans-[RuNOPy4F](ClO4)2 (1) in its ground state (GS). The X-ray absorption spectroscopy (XAS) spectra measured at the N, O and F K-edges were compared to TDDFT calculations to identify and assign the absorption peaks, and to elucidate the structures of coordinated nitric oxide (NO). Based on a reasonable match of experimental and calculated spectra of GS, the N, O and F K-edges XAS spectra of Ru-ON (MS1) and Ru-η2-(NO) (MS2) isomers of 1 were calculated. According to the calculations, the energy or/and intensity of the 1 s→LUMO, LUMO+ 1 peaks of N, O or F K-edge changes significantly after GS isomerization to both MS1 and MS2. Current theoretical modeling of the NO linkage isomer in 1 is a background for the future investigation of isomerization process of NO by XAS methods. Since the investigated isomerization occurs in a variety of different nitrosyl complexes, obtained results can be extrapolated to a large family of transition metal nitrosyl compounds.

本文报道了trans-[RuNOPy4F](ClO4)2(1)单晶在基态(GS)下的实验研究。将N、O和F k边的x射线吸收光谱(XAS)与TDDFT计算结果进行比较,以识别和分配吸收峰,并阐明配位一氧化氮(NO)的结构。在将GS的实验光谱与计算光谱进行合理匹配的基础上,计算了1的Ru- on (MS1)和Ru-η2-(NO) (MS2)异构体的N、O和F k边XAS光谱。计算表明,GS异构化到MS1和MS2后,N、O或F - k边的1 s→LUMO、LUMO+ 1峰的能量或/和强度发生了显著变化。目前对1中NO键同分异构体的理论建模为未来用XAS方法研究NO的异构化过程提供了背景。由于所研究的异构化发生在各种不同的亚硝基配合物中,所得结果可以外推到一个大的过渡金属亚硝基化合物家族。
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引用次数: 0
Analysis of X-ray images and spectra (aXis2000): A toolkit for the analysis of X-ray spectromicroscopy data x射线图像和光谱分析(aXis2000):用于分析x射线光谱显微镜数据的工具包
IF 1.9 4区 物理与天体物理 Q2 SPECTROSCOPY Pub Date : 2023-07-01 DOI: 10.1016/j.elspec.2023.147360
Adam P. Hitchcock

Spectromicroscopy refers to analytical methods that combine imaging and spectroscopy to provide detailed, spatially resolved analytical information about a sample, such as the type and quantitative spatial distributions of chemical components, geometric or magnetic alignment information, crystal structure, etc. The analysis of X-ray images and spectra (aXis2000) software described in this work provides a set of routines within a single, integrated, graphical-oriented package to read, display, manipulate and analyze spectromicroscopy data, with particular focus on soft X-ray spectromicroscopy methods such as scanning transmission X-ray microscopy (STXM), X-ray photoemission electron microscopy (XPEEM), scanning photoelectron X-ray microscopy (SPEM) and transmission X-ray microscopy (TXM). Here, this free software is described and compared to other software that can provide similar or complementary capabilities. Examples of spectromicroscopic analyses using advanced features of aXis2000 are provided.

光谱显微镜是指将成像和光谱学相结合,提供样品详细的、空间分辨的分析信息的分析方法,如化学成分的种类和定量空间分布、几何或磁向信息、晶体结构等。本工作中描述的x射线图像和光谱分析(aXis2000)软件在一个单一的、集成的、面向图形的软件包中提供了一套例程,用于读取、显示、操作和分析光谱显微镜数据,特别侧重于软x射线光谱显微镜方法,如扫描透射x射线显微镜(STXM)、x射线光发射电子显微镜(XPEEM)、扫描光电子x射线显微镜(SPEM)和透射x射线显微镜(TXM)。在这里,对这个自由软件进行了描述,并与其他能够提供类似或互补功能的软件进行了比较。提供了使用aXis2000先进功能的光谱显微分析实例。
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引用次数: 6
Theoretical study of elastic electron scattering by zinc atoms in the framework of relativistic optical potential model 相对论光学势模型框架下锌原子弹性电子散射的理论研究
IF 1.9 4区 物理与天体物理 Q2 SPECTROSCOPY Pub Date : 2023-07-01 DOI: 10.1016/j.elspec.2023.147365
Vladimir I. Kelemen , Sándor Demes , Eugene Yu. Remeta

A theoretical study of integral and differential cross sections as well as of spin-polarization effects is reported for elastic electron scattering by zinc atoms at collision energies up to 3 keV. It has been shown that a P-wave shape resonance appears in the low-energy range of the integral cross sections. Its energy is about 0.19 and 0.20 eV, while its width is about 0.309 and 0.356 eV for the j = 3/2 and j = 1/2 total angular momentum of the electron, respectively. The differential cross sections of scattering and the Sherman-functions S(E,θ) are computed by the parameter-free complex optical potential method. The calculated data are in a good overall agreement with the available experimental and theoretical data in the literature. The energy and angular positions have been located for five critical minima in the differential cross sections. The low-energy minimum is located at [6.63 eV; 102.34°], while the high-energy minimum is at [347.53 eV; 124.11°]. Ten points for the scattered electrons' total spin-polarization (S=±1) have been found in the vicinity of the critical minima along with the energy and the angular widths of the spin-polarization peaks (where |S|0.9).

本文报道了锌原子在碰撞能量高达3kev时弹性电子散射的积分和微分截面以及自旋极化效应的理论研究。结果表明,在积分截面的低能范围内出现p波共振。当电子的总角动量为j = 3/2和j = 1/2时,其能量约为0.19和0.20 eV,宽度约为0.309和0.356 eV。用无参数复光势法计算了散射微分截面和谢尔曼函数S(E,θ)。计算数据与现有的实验和理论数据基本一致。在微分截面上确定了五个临界极小值的能量和角位置。低能最小值位于[6.63 eV];102.34°],能量最小值为347.53 eV;124.11°)。随着自旋极化峰的能量和角宽度(其中|S|≥0.9),在临界极小值附近发现了10个散射电子的总自旋极化点(S=±1)。
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引用次数: 0
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Journal of Electron Spectroscopy and Related Phenomena
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