The legalization of hemp cultivation in the United States has raised the need for reliable methods to distinguish between legal hemp and illegal marijuana. Genetic analysis has emerged as a powerful tool, surpassing traditional chemical methods in specific aspects, such as analyzing trace amounts, aged samples, and different parts of the sample. Genetic differences in cannabinoid synthase genes offer promise for precise crop type determination, particularly focusing on genes like tetrahydrocannabinolic acid synthase (THCAS), cannabidiolic acid synthase (CBDAS), and cannabichromenic acid synthase (CBCAS). However, previous research faced several challenges in developing discriminatory genetic markers, including limited sample sizes, high similarity between the synthase genes, and the presence of pseudo synthase genes. A comprehensive study using Next-Generation Sequencing (NGS) introduced a differentiation flowchart based on THCAS, CBDAS, and THCAS pseudogenes. To bridge the gap between NGS and the practical requirements of crime laboratories, two rapid genotyping assays were developed: a CE-based SNaPshot™ assay and a TaqMan™ real-time PCR assay. While the SNaPshot™ assay effectively differentiated various hemp and marijuana types, differentiation was limited with marijuana samples containing THC% close to the 0.3% legal threshold (0.3%–1%). The TaqMan™ qPCR SNP genotyping assay provided quicker results, making it an efficient choice for crime laboratories. However, this method had the same limitations as the SNaPshot™ assay with addtional challenges in differentiating edible hemp seed samples, and it did not provide additional CBD information. The study also highlighted the influence of two variants of one THCAS pseudogene on chemotype determination, emphasizing the necessity for precise genetic analysis for accurate categorization of cannabis varieties.
{"title":"The development of two fast genotyping assays for the differentiation of hemp from marijuana","authors":"Ya-Chih Cheng PhD, Rachel Houston PhD","doi":"10.1111/1556-4029.15663","DOIUrl":"10.1111/1556-4029.15663","url":null,"abstract":"<p>The legalization of hemp cultivation in the United States has raised the need for reliable methods to distinguish between legal hemp and illegal marijuana. Genetic analysis has emerged as a powerful tool, surpassing traditional chemical methods in specific aspects, such as analyzing trace amounts, aged samples, and different parts of the sample. Genetic differences in cannabinoid synthase genes offer promise for precise crop type determination, particularly focusing on genes like tetrahydrocannabinolic acid synthase (THCAS), cannabidiolic acid synthase (CBDAS), and cannabichromenic acid synthase (CBCAS). However, previous research faced several challenges in developing discriminatory genetic markers, including limited sample sizes, high similarity between the synthase genes, and the presence of pseudo synthase genes. A comprehensive study using Next-Generation Sequencing (NGS) introduced a differentiation flowchart based on THCAS, CBDAS, and THCAS pseudogenes. To bridge the gap between NGS and the practical requirements of crime laboratories, two rapid genotyping assays were developed: a CE-based SNaPshot™ assay and a TaqMan™ real-time PCR assay. While the SNaPshot™ assay effectively differentiated various hemp and marijuana types, differentiation was limited with marijuana samples containing THC% close to the 0.3% legal threshold (0.3%–1%). The TaqMan™ qPCR SNP genotyping assay provided quicker results, making it an efficient choice for crime laboratories. However, this method had the same limitations as the SNaPshot™ assay with addtional challenges in differentiating edible hemp seed samples, and it did not provide additional CBD information. The study also highlighted the influence of two variants of one THCAS pseudogene on chemotype determination, emphasizing the necessity for precise genetic analysis for accurate categorization of cannabis varieties.</p>","PeriodicalId":15743,"journal":{"name":"Journal of forensic sciences","volume":"70 1","pages":"49-60"},"PeriodicalIF":1.5,"publicationDate":"2024-11-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142650449","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jo-Anne Bright PhD, Mikkel Meyer Andersen PhD, Duncan Taylor PhD, Hannah Kelly PhD, Maarten Kruijver PhD, John Buckleton DSc
The Y chromosomal haplotype is expected to be identical (or close to, depending on the mutation rate) among a male and many of his paternal relatives. This means that often the same evidential value for the DNA evidence is obtained, whether the true donor or one of his close paternal relatives is compared to a crime sample. Commentators (see for example the UK Forensic Science Regulator or Amorim) have suggested to change the proposition pair to compare the probability of the evidence if the Person of Interest (POI) or one of his close paternal relatives left the DNA to the probability of the evidence if an unrelated male from the population left the DNA. We argue that this is problematic because there is no clear definition of close paternal relatives and truly unrelated males do not exist. Instead, we take a starting point in the traditional proposition pair “The source of the male DNA is the POI” versus “The source of the male DNA is not the POI” and make the latter one operational by suggesting that it is formulated as “The source of the male DNA is a random man from the population”. The issue of matching males in the POI's lineage is then addressed either in a comment in the statement or directly through a probability model.
预计男性及其许多父系亲属的 Y 染色体单倍型是相同的(或接近相同,取决于突变率)。这意味着,无论将真正的捐献者或其父系近亲之一与犯罪样本进行比较,通常都能获得相同的 DNA 证据价值。有评论者(如英国法医学监管机构或阿莫林)建议改变命题对,将利益相关者(POI)或其父系近亲之一留下DNA的证据概率与人群中无血缘关系男性留下DNA的证据概率进行比较。我们认为这是有问题的,因为父系近亲没有明确的定义,而且真正没有血缘关系的男性并不存在。相反,我们以 "男性 DNA 的来源是 POI "与 "男性 DNA 的来源不是 POI "这一对传统命题为出发点,建议将后一个命题表述为 "男性 DNA 的来源是人群中的随机男性",从而使后一个命题具有可操作性。然后,POI 的血统中与男性相匹配的问题就可以通过声明中的注释或直接通过概率模型来解决。
{"title":"Relevant propositions for Y chromosome interpretation","authors":"Jo-Anne Bright PhD, Mikkel Meyer Andersen PhD, Duncan Taylor PhD, Hannah Kelly PhD, Maarten Kruijver PhD, John Buckleton DSc","doi":"10.1111/1556-4029.15669","DOIUrl":"10.1111/1556-4029.15669","url":null,"abstract":"<p>The Y chromosomal haplotype is expected to be identical (or close to, depending on the mutation rate) among a male and many of his paternal relatives. This means that often the same evidential value for the DNA evidence is obtained, whether the true donor or one of his close paternal relatives is compared to a crime sample. Commentators (see for example the UK Forensic Science Regulator or Amorim) have suggested to change the proposition pair to compare the probability of the evidence if the Person of Interest (POI) or one of his close paternal relatives left the DNA to the probability of the evidence if an unrelated male from the population left the DNA. We argue that this is problematic because there is no clear definition of close paternal relatives and truly unrelated males do not exist. Instead, we take a starting point in the traditional proposition pair “The source of the male DNA is the POI” versus “The source of the male DNA is not the POI” and make the latter one operational by suggesting that it is formulated as “The source of the male DNA is a random man from the population”. The issue of matching males in the POI's lineage is then addressed either in a comment in the statement or directly through a probability model.</p>","PeriodicalId":15743,"journal":{"name":"Journal of forensic sciences","volume":"70 1","pages":"271-275"},"PeriodicalIF":1.5,"publicationDate":"2024-11-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142650448","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yi Yang BEng, Yunqi Tang PhD, Junjian Cui MEng, Xiaorui Zhao MEng
As the court put forward higher requirements for quantitative evaluation and scientific standards of forensic evidence, how to objectively and scientifically express identification opinions has become a challenge for traditional forensic identification methods. Score-based likelihood ratios are mathematical methods for quantitative evaluation of forensic evidence. However, due to the subtle differences in inter-class barefootprints, there is no automatic barefootprints matching algorithm with high accuracy under large-scale dataset validation, and there are few studies related to deep learning barefootprint features for evidence evaluation in court. Therefore, score-based likelihood ratios for barefootprint evidence using deep learning features are proposed by this paper. Firstly, the largest barefootprint dataset (BFD) is constructed, which contains 54,118 barefootprint images from 3000 individuals. Then, an automatic barefootprint feature extraction and matching algorithm is proposed, which achieves a retrieval accuracy of 98.4% on BFD and an AUC of 0.989 for barefootprint validation. Next, Cosine distance, Euclidean distance and Manhattan distance are employed to measure the comparison scores between intra-class and inter-class barefootprints using deep learning features in four dimensions of 64, 128, 512 and 1024, respectively. The performance of proposed model is evaluated by comparing the