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Identification of an IL17RC missense variant in a Chinese family with multiple osteochondromas and ankylosing spondylitis 中国多发性骨软骨瘤和强直性脊柱炎家族中IL17RC错义变异的鉴定
IF 2.5 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2025-08-14 DOI: 10.1038/s10038-025-01383-5
Yingchun Zheng, Xuewu Wei, Zhongzhi Gan, Mingming Zhang, Zongrui Shen, Shunfei Ma, Yihao Huang, Fei He, Jian Wang, Fu Xiong
Ankylosing spondylitis (AS) is a chronic and progressive inflammatory arthritis involving disorders of both the immune and skeletal systems. Multiple osteochondromas (MO) is a rare skeletal disorder with a variety of clinical manifestations characterized by multiple benign exostoses. Here, we investigate a Chinese family with HLA-B27-negative AS complicated with MO. Whole-exome sequencing (WES) and Sanger sequencing were used to screen and identify the pathogenic gene. In vitro functional analysis was performed, and a pathogenesis-associated interleukin (IL)-17 receptor C (IL17RC) mutation was analyzed to investigate its effect on phenotypes. WES was used to identify a known missense mutation, NM_000127.3:c.1019 G > A(p.Arg340His), in the pathogenic gene EXT1 that is causal for MO. Moreover, a missense mutation, NM_153461.3:c.1067 C > T(p.Thr356Met), in the IL17RC gene was identified as potentially responsible for AS or spondyloarthritis symptoms in this family. In vitro over-expression of mutant IL17RC decreased its expression and increased the expression of IL17RA, consistent with the expression of these two genes in patients. Mechanistically, mutant IL17RC enhanced the activation of the NF-κB pathway. This study increases our understanding of the pathogenesis and progression of these diseases. Our findings broaden the risk factors in non-HLA-B genes associated with the NF-κB pathway in AS.
强直性脊柱炎(AS)是一种慢性进行性炎性关节炎,涉及免疫系统和骨骼系统的疾病。多发性骨软骨瘤(MO)是一种罕见的骨骼疾病,临床表现多样,以多发良性外生瘤为特征。在此,我们研究了一个中国hla - b27阴性AS合并MO的家庭。采用全外显子组测序(WES)和Sanger测序筛选和鉴定致病基因。进行了体外功能分析,并分析了发病相关的白细胞介素(IL)-17受体C (IL17RC)突变,以研究其对表型的影响。利用WES鉴定了致病基因EXT1中已知的错义突变NM_000127.3: C .1019 G > a (p.a g340his),该突变可导致MO。此外,IL17RC基因中的错义突变NM_153461.3: C .1067 C > T(p.s r356met)被鉴定为该家族中as或脊椎关节炎症状的潜在原因。在体外过表达突变体IL17RC会降低其表达,升高IL17RA的表达,这与这两个基因在患者体内的表达一致。在机制上,突变体IL17RC增强了NF-κB通路的激活。这项研究增加了我们对这些疾病的发病机制和进展的理解。我们的发现拓宽了与AS中NF-κB通路相关的非hla - b基因的危险因素。
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引用次数: 0
Analyzing complex traits and diseases using GxE PRS: genotype-environment interaction in polygenic risk score models 利用GxE - PRS分析复杂性状和疾病:多基因风险评分模型中的基因型-环境相互作用。
IF 2.5 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2025-08-14 DOI: 10.1038/s10038-025-01378-2
Dovini Jayasinghe, Vu Viet Hoang Pham, Kerri Beckmann, Beben Benyamin, S. Hong Lee
A deeper understanding of how environmental factors influence genetic risks is crucial for exploring their combined effects on health outcomes. This can be effectively achieved by incorporating genotype-environment (GxE) interactions in polygenic risk score (PRS) models. We applied our recently developed GxEprs model to a wide range of obesity-related complex traits and diseases, leveraging data from the UK Biobank, to capture significant GxE signals. This work represents the first application of the “GxEprs” method, designed to minimize issues with spurious GxE signals and model misspecification. We identified significant GxE signals especially in quantitative phenotypes such as body mass index (BMI), waist-to-hip ratio (WHR), body fat percentage (BF) and waist circumference (WC) and our results indicated a significant enhancement in prediction accuracy in most traits, highlighting the importance of the GxE component. This study demonstrated the potential of incorporating GxE interactions in PRS models, offering a broad understanding of genetic risks and laying foundation in applying these insights in personalized medicine.
深入了解环境因素如何影响遗传风险对于探索它们对健康结果的综合影响至关重要。这可以通过将基因型-环境(GxE)相互作用纳入多基因风险评分(PRS)模型来有效实现。我们利用英国生物银行的数据,将我们最近开发的GxEprs模型应用于广泛的肥胖相关的复杂特征和疾病,以捕获重要的GxE信号。这项工作代表了“gxeps”方法的首次应用,旨在最大限度地减少伪GxE信号和模型错误规范的问题。我们发现了显著的GxE信号,特别是在体重指数(BMI)、腰臀比(WHR)、体脂率(BF)和腰围(WC)等定量表型中,我们的结果表明,大多数性状的预测准确性显著提高,突出了GxE成分的重要性。该研究显示了将GxE相互作用纳入PRS模型的潜力,提供了对遗传风险的广泛理解,并为将这些见解应用于个性化医疗奠定了基础。
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引用次数: 0
Why are men taller than women?: Genetic and hormonal factors involved in sex differences in human height 为什么男人比女人高?基因和荷尔蒙因素与人类身高的性别差异有关。
IF 2.5 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2025-08-14 DOI: 10.1038/s10038-025-01384-4
Maki Fukami, Tsutomu Ogata, Atsushi Hattori
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引用次数: 0
Genetic insights into the origin, admixture, and migration of the early Austronesian peoples 对早期南岛人的起源、混合和迁移的遗传学见解。
IF 2.5 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2025-08-07 DOI: 10.1038/s10038-025-01380-8
Albert Min-Shan Ko, Hung-Pin Tu, Ying-Chin Ko
It is understood that Austronesian ancestors appeared in Taiwan ~6 thousand years ago (Kya), and later expanded beyond Taiwan, but their early origins and relationships with people outside Taiwan remain uncertain. By reconstructing phylogenetic patterns and phylogeographical distribution from mitochondrial and Y haplogroups and genome-wide data, new evidence shows that the Pre-Austronesians may have originated in the coastal southeastern China (centered on Fujian) during the very early Neolithic Age (>10Kya) and lived on the marine subsistence in addition to hunting-gathering. They subsequently mixed with some ancient northern Chinese (from Shandong) and introduced mixed millets and rice cultivation, forming the Proto-Austronesian people ~7-10Kya. Later, Early Austronesians (~4-7Kya) evolved and migrated to Taiwan (~6Kya), and then spread to Island Southeast Asia (ISEA), Champa, southern Thailand, Madagascar, and Oceania via the Philippines (~4.1Kya). The second source is the Austroasiatic ancestors, who originated in southern China in the early Neolithic Age and migrated to the ISEA via the Mainland Southeast Asia and Malay Peninsula in the late Neolithic Age. They mixed with the core Austronesian speakers from Taiwan to become Austronesian speakers, and spread to Oceania. Linguistic and archaeological findings also support the Austronesian origins and genetic prehistory. Most recently, some Austronesians of ISEA have mixed with newcomers from South Asia. The Austronesian ancestors neither originated in the ISEA nor migrated directly from mainland China to the Philippines, also has nothing to do with the so-called “two-layer” hypothesis. Future research requires more Paleolithic and Neolithic genetic evidence, improved genetic age estimates, and multidisciplinary consistency.
据了解,南岛人的祖先出现在台湾约6000年前(Kya),后来扩展到台湾以外,但他们的早期起源和与台湾以外的人的关系仍然不确定。通过对线粒体、Y单倍群和全基因组数据的系统发育模式和系统地理分布的重建,新的证据表明,前南岛人可能起源于新石器时代早期的中国东南部沿海地区(以福建为中心),除了狩猎采集外,还以海洋为生。随后,他们与一些古代中国北方人(来自山东)混合,并引入了混合的小米和水稻种植,形成了约7-10Kya的原始南岛人。后来,早期南岛人(~4-7Kya)进化并迁移到台湾(~6Kya),然后通过菲律宾(~4.1Kya)传播到东南亚岛屿(ISEA)、占婆岛、泰国南部、马达加斯加和大洋洲。第二个来源是南亚祖先,他们在新石器时代早期起源于中国南方,在新石器时代晚期通过东南亚大陆和马来半岛迁移到东南亚。他们与来自台湾的核心南岛语使用者混合,成为南岛语使用者,并传播到大洋洲。语言学和考古学的发现也支持南岛人的起源和遗传史前。最近,ISEA的一些南岛人与来自南亚的新来者混在一起。南岛人的祖先既不是起源于东南亚,也不是直接从中国大陆迁移到菲律宾,也与所谓的“双层”假说无关。未来的研究需要更多的旧石器时代和新石器时代的遗传证据,改进的遗传年龄估计,以及多学科的一致性。
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引用次数: 0
A novel m.14677 T > C variant in mitochondrial tRNAGlu gene causes chronic progressive external ophthalmoplegia 小说m.14677线粒体tRNAGlu基因突变引起慢性进行性外眼肌麻痹。
IF 2.5 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2025-08-06 DOI: 10.1038/s10038-025-01381-7
Nahoko Katayama Ueda, Masakazu Mimaki, Shota Ito, Ayuka Murakami, Satoshi Yokoi, Ichizo Nishino, Masahisa Katsuno, Yu-ichi Goto
Chronic progressive external ophthalmoplegia (CPEO) is a mitochondrial disease characterized by progressive ptosis and ophthalmoplegia, caused by single deletions, point mutations, or multiple deletions in mitochondrial DNA (mtDNA). Most point mutations occur in tRNA genes. Here, we report a novel variant of the tRNAGlu gene associated with CPEO. A 45-year-old male presented with ptosis and external ophthalmoplegia; however, blood test results, including lactate levels and autoantibodies, were normal. CPEO was suspended, prompting additional myopathological examination, mtDNA sequencing analysis, long polymerase chain reaction (PCR) analysis, and single-fiber analysis to compare mutation loads between ragged-red fibers (RRFs) and non-RRFs. Histopathological examination revealed scattered COX-negative RRFs. No deletions were found in the mtDNA. MtDNA sequencing analysis revealed a novel variant, m.14677 T > C, in the tRNAGlu gene, with Sanger sequencing indicating 45% heteroplasmy in the muscle tissue. Single-fiber analysis showed a significantly higher mutation load of m.14677 T > C in RRFs (range: 25.3–92.8%; median: 88.1%; n = 6) compared with non-RRFs (range: 3.5–85.9%; median: 17.1%; n = 5) (P = 0.03). Based on the significantly higher mutation load in RRFs than in non-RRFs, pathological evidence of mitochondrial disease, and the mutation’s occurrence at an evolutionarily conserved site, we concluded that m.14677 T > C, a novel variant of the tRNAGlu gene, is the cause of CPEO. Biochemical and histopathological examinations of muscle tissue, combined with single-fiber analysis, are valuable tools for evaluating mtDNA variants, particularly those within tRNA genes.
慢性进行性外眼麻痹(CPEO)是一种线粒体疾病,以进行性上睑下垂和眼麻痹为特征,由线粒体DNA (mtDNA)的单缺失、点突变或多重缺失引起。大多数点突变发生在tRNA基因中。在这里,我们报告了与CPEO相关的tRNAGlu基因的新变体。45岁男性,以上睑下垂和眼外麻痹为主;然而,血液测试结果,包括乳酸水平和自身抗体,都是正常的。CPEO暂停,进一步进行肌病理检查、mtDNA测序分析、长聚合酶链反应(PCR)分析和单纤维分析,以比较红布纤维(rrf)和非rrf之间的突变负荷。组织病理学检查显示分散的cox阴性RRFs。mtDNA未发现缺失。MtDNA测序分析在tRNAGlu基因中发现了一种新的变异m.14677 T > C, Sanger测序表明肌肉组织中存在45%的异质性。单纤维分析显示,RRFs中m.14677 T > C的突变负荷显著较高(范围:25.3-92.8%;平均:88.1%;n = 6)与非rrfs相比(范围:3.5-85.9%;平均:17.1%;n = 5) (P = 0.03)。基于RRFs中明显高于非RRFs的突变负荷、线粒体疾病的病理证据以及突变发生在进化保守位点,我们得出结论,tRNAGlu基因的一种新变体m.14677 T > C是CPEO的原因。肌肉组织的生化和组织病理学检查,结合单纤维分析,是评估mtDNA变异,特别是tRNA基因变异的有价值的工具。
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引用次数: 0
Molecular genetics of skeletal muscle channelopathies. 骨骼肌通道病的分子遗传学。
IF 2.5 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2025-08-06 DOI: 10.1038/s10038-025-01370-w
Tomoya Kubota, Masanori P Takahashi

Skeletal muscle channelopathies are genetic disorders associated with variants in genes encoding ion channels and related proteins expressed in skeletal muscle. Most commonly, these involve genes encoding voltage-gated ion channels (VGICs) that regulate sarcolemmal excitability, including CLCN1 for ClC-1, SCN4A for the Nav1.4 α subunit, CACNA1S for the Cav1.1 α subunit, and KCNJ2 for Kir2.1. Skeletal muscle channelopathies primarily manifest with two clinical symptoms: myotonia, characterized by delayed muscle relaxation, and paralysis and classified into two disease types: non-dystrophic myotonia and periodic paralysis. Recent advances in the clinical application of next-generation sequencing have improved diagnostic rate and provided epidemiological evidence of the diseases. Furthermore, atypical phenotypes have been identified, indicating that skeletal muscle channelopathies present a broad clinical spectrum. This review provides an updated overview of the clinical and genetic aspects of skeletal muscle channelopathies and discusses key issues that require further investigation.

骨骼肌通道病是一种与骨骼肌中表达的离子通道和相关蛋白编码基因变异相关的遗传性疾病。最常见的是,这些涉及编码调节肌层兴奋性的电压门控离子通道(VGICs)的基因,包括ClC-1的CLCN1, Nav1.4 α亚基的SCN4A, Cav1.1 α亚基的CACNA1S和Kir2.1的KCNJ2。骨骼肌通道病主要表现为两种临床症状:肌强直,以肌肉延迟松弛为特征,并分为两种疾病类型:非营养不良性肌强直和周期性麻痹。新一代测序技术在临床应用中的最新进展,提高了该病的诊断率,并为该病提供了流行病学证据。此外,非典型表型已被确定,表明骨骼肌通道病呈现广泛的临床谱。本文综述了骨骼肌通道病的临床和遗传方面的最新概况,并讨论了需要进一步研究的关键问题。
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引用次数: 0
Novel glycan-related biomarker discovery by total glycomic and focused protein glycomic analyses. 通过总糖喜剧和重点蛋白糖喜剧分析发现新的糖相关生物标志物。
IF 2.5 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2025-08-06 DOI: 10.1038/s10038-025-01377-3
Hisatoshi Hanamatsu, Goki Suda, Masatsugu Ohara, Masaki Kurogochi, Naoya Sakamoto, Jun-Ichi Furukawa

The cell surface is covered with a variety of glycan subtypes (sub-glycans) such as N-glycans, O-glycans, glycosphingolipid-glycans, and glycosaminoglycans, which are collectively called the glycocalyx. The expression patterns of sub-glycans change in response to various biological events during disease pathogenesis; however, the structures of all major sub-glycans and their relative concentrations in a cell have been hardly reported. Total glycomic analysis, which comprehensively measures all major sub-glycans, is a powerful tool to discover cellular and clinical biomarkers. In this review, we provide an overview of the analytical methods for sub-glycans and the total glycome in cultured cell lines, human serum, mouse brain tissue, and human osteoarthritis cartilage. This approach not only facilitates characterization of cells, but also has applications for hierarchical clustering analysis, glycan-related biomarker discovery, and investigation of the relationship between sub-glycans and gene expression levels using the total glycome. Moreover, we discuss our recent research focused on identifying potential biomarkers of nonalcoholic fatty liver disease. These glycomic technologies are expected to contribute to diagnostics and drug development for rare diseases in the future.

细胞表面覆盖着多种聚糖亚型(亚聚糖),如n -聚糖、o -聚糖、糖鞘脂聚糖、糖胺聚糖等,统称为糖萼。在疾病发生过程中,亚聚糖的表达模式随着各种生物学事件的发生而变化;然而,所有主要亚聚糖的结构及其在细胞中的相对浓度几乎没有报道。全面测量所有主要亚聚糖的总糖糖分析是发现细胞和临床生物标志物的有力工具。本文综述了体外培养细胞系、人血清、小鼠脑组织和人骨关节炎软骨中亚聚糖和总聚糖的分析方法。该方法不仅有利于细胞的表征,而且可用于分层聚类分析、聚糖相关生物标志物的发现,以及利用总聚糖研究亚聚糖与基因表达水平之间的关系。此外,我们讨论了我们最近的研究重点是识别非酒精性脂肪性肝病的潜在生物标志物。这些糖糖技术有望在未来为罕见病的诊断和药物开发做出贡献。
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引用次数: 0
When ganglioside pathways go awry: congenital disorders and experimental insights. 当神经节苷脂通路出错:先天性疾病和实验见解。
IF 2.5 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2025-07-31 DOI: 10.1038/s10038-025-01366-6
Kei-Ichiro Inamori, Jin-Ichi Inokuchi

Glycosphingolipids comprise a hydrophobic ceramide backbone, consisting of a long-chain base (sphingosine) and a fatty acid, conjugated with a hydrophilic oligosaccharide moiety. These amphipathic molecules are integral constituents of cellular membranes, playing pivotal roles in modulating membrane protein functionality and receptor-mediated signaling. Among glycosphingolipids, gangliosides, defined by their inclusion of sialic acid residues, are abundantly enriched in the central nervous system. Notably, four predominant species, GM1, GD1a, GD1b, and GT1b, constitute the majority of gangliosides in the mammalian brain and are indispensable for neuronal development, synaptic architecture, and signal transduction. These gangliosides are critically involved in neurogenesis, differentiation, membrane stability, and the modulation of receptor function, ion channel activity, and immunological signaling within the nervous system. The biosynthesis of these gangliosides is orchestrated by key enzymes, including GM3 synthase (ST3GAL5) and GM2/GD2 synthase (B4GALNT1) catalyzing the formation of downstream intermediates. Pathogenic variants in ST3GAL5 result in GM3 synthase deficiency (GM3SD), an autosomal recessive disorder characterized by infantile-onset epileptic encephalopathy and profound developmental regression. In contrast, biallelic mutations in B4GALNT1 cause a complex form of hereditary spastic paraplegia (SPG26), marked by progressive spasticity and intellectual impairment. ST3GAL3, another α2,3-sialyltransferase, contributes to the synthesis of GD1a and GT1b, as well as to glycoprotein sialylation. Mutations in this gene underlie neurodevelopmental disorders, including developmental and epileptic encephalopathy type 15 (DEE15). In this review, we summarize the current understanding of the molecular pathogenesis of congenital ganglioside biosynthesis disorders, integrating data from genetically engineered mouse models and affected individuals.

鞘糖脂包括疏水神经酰胺骨架,由长链碱基(鞘脂)和脂肪酸组成,与亲水性低聚糖部分偶联。这些两亲分子是细胞膜的组成部分,在调节膜蛋白功能和受体介导的信号传导中起着关键作用。在鞘糖脂中,包含唾液酸残基的神经节苷类在中枢神经系统中大量富集。值得注意的是,GM1、GD1a、GD1b和GT1b这四个主要物种构成了哺乳动物大脑中的大部分神经节苷脂,并且在神经元发育、突触结构和信号转导中不可或缺。这些神经节苷类物质在神经发生、分化、膜稳定性、受体功能、离子通道活性和神经系统免疫信号的调节中起着至关重要的作用。这些神经节苷脂的生物合成是由关键酶调控的,包括GM3合成酶(ST3GAL5)和GM2/GD2合成酶(B4GALNT1)催化下游中间体的形成。ST3GAL5的致病变异导致GM3合成酶缺乏症(GM3SD),这是一种常染色体隐性遗传病,其特征是婴儿期癫痫性脑病和严重的发育倒退。相反,B4GALNT1的双等位基因突变可导致复杂形式的遗传性痉挛性截瘫(SPG26),其特征是进行性痉挛和智力损伤。ST3GAL3是另一种α2,3-唾液基转移酶,参与GD1a和GT1b的合成以及糖蛋白唾液基化。该基因的突变是神经发育障碍的基础,包括发展性和癫痫性脑病15型(DEE15)。在这篇综述中,我们结合基因工程小鼠模型和受影响个体的数据,总结了目前对先天性神经节苷脂生物合成障碍的分子发病机制的理解。
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引用次数: 0
Genetics of myositis - distinct backgrounds of subtypes. 肌炎的遗传学-不同亚型的背景。
IF 2.5 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2025-07-30 DOI: 10.1038/s10038-025-01374-6
Akinori Uruha

Myositis is a heterogeneous group of inflammatory muscular disorders. Although the main etiology is autoimmune chronic inflammation, the underlying pathomechanism remains unclear. Advances in genetic technology have provided important insights into its complex pathophysiology. Large genetic studies on myositis have advocated a relationship with several HLA loci and possible disease susceptibility genes in non-HLA genes. Idiopathic inflammatory myopathy, or autoimmune myositis, was originally divided into polymyositis and dermatomyositis. However, this classification has recently been revised based on updated information on the pathophysiology of autoimmune myositis. Autoimmune myositis is currently understood to include at least four major clinicopathologically distinct entities: dermatomyositis, antisynthetase syndrome, inclusion body myositis, and immune-mediated necrotizing myopathy. This review aims to consolidate knowledge of the genetics of myositis in order to meet the current classification and highlights key findings for a more detailed understanding of the underlying pathomechanism.

肌炎是一种异质性的炎性肌肉疾病。虽然主要病因是自身免疫性慢性炎症,但其潜在的病理机制尚不清楚。遗传技术的进步为其复杂的病理生理学提供了重要的见解。对肌炎的大量遗传研究表明,肌炎与非HLA基因中的几个HLA位点和可能的疾病易感基因有关。特发性炎性肌病,或自身免疫性肌炎,最初分为多发性肌炎和皮肌炎。然而,基于自身免疫性肌炎病理生理学的最新信息,最近对这种分类进行了修订。目前认为自身免疫性肌炎包括至少四种不同的临床病理实体:皮肌炎、抗合成酶综合征、包涵体肌炎和免疫介导的坏死性肌病。这篇综述旨在巩固肌炎的遗传学知识,以满足目前的分类,并强调了更详细地了解潜在病理机制的关键发现。
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引用次数: 0
Genome-wide analysis of 3′ untranslated region alternative polyadenylation quantitative trait loci identified a potential novel susceptibility locus for lung cancer in cross-ancestry populations 对3'非翻译区选择性多聚腺苷酸化数量性状位点的全基因组分析发现了一个潜在的新的跨祖先人群肺癌易感位点。
IF 2.5 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2025-07-29 DOI: 10.1038/s10038-025-01375-5
Yi Wang, Yuancheng Li, Ting Tian, Renfang Han, Nimei Zeng, Fangfei Xie, Yun Wang, Jingyi Fan
Genome wide association studies (GWASs) have revealed several lung cancer susceptibility loci; however, we still face key issues such as how to identify more ‘high-frequency and inefficient’ variants and decipher the causal variants. Alternative polyadenylation (APA) can shorten or prolong the 3′UTR of mRNA containing cis regulatory elements, which plays an important role in post transcriptional regulation. Specific variants can affect the 3′UTR APA, leading to differences in the risk of lung cancer among individuals carrying different alleles. In this study, a cross-ancestry two-stage case-control design was used to evaluate the associations of 3′UTR APA related variants (3′aQTL SNPs, 3′aSNPs) defined by GTEx in normal lung tissues with the risk of lung cancer based on the genome-wide meta-analysis (GWMA) from FinnGen, UK Biobank and VA Million Veteran Program (MVP), including 28,557 cases and 1,355,961 controls. The promising variants were validated in an independent Chinese population with 1169 lung cancer cases and 1046 controls. Functional annotations of the identified 3′aSNP and related genes were performed based on multiple public databases. Finally, we identified a potential 3′aSNP rs11583258 associated with the risk of lung cancer both in the GWMA [OR = 1.04 (1.02–1.06), P = 1.00 × 10–4] and in the validation stage [OR = 1.08 (1.01–1.16), P = 1.01 × 10–2] at 1p36.11. Function annotation integrating the results of multiple public datasets suggested the variants in this region might affect both the length of the 3′UTR of the UBXN11 transcripts and the expression of UBXN11 to affect the susceptibility of lung cancer.
全基因组关联研究(GWASs)揭示了几个肺癌易感位点;然而,我们仍然面临着一些关键问题,比如如何识别更多的“高频和低效”变体,并破译因果变体。选择性聚腺苷化(APA)可缩短或延长含有顺式调控元件的mRNA的3'UTR,在转录后调控中起重要作用。特定的变异可以影响3'UTR APA,导致携带不同等位基因的个体患肺癌的风险存在差异。本研究采用跨血统两阶段病例对照设计,基于FinnGen、UK Biobank和VA Million Veteran Program (MVP)的全基因组荟萃分析(GWMA),评估正常肺组织中由GTEx定义的3'UTR APA相关变异(3'aQTL SNPs、3'aSNPs)与肺癌风险的相关性,包括28,557例和1,355,961例对照。这些有希望的变异在1169例肺癌病例和1046例对照的独立中国人群中得到了验证。基于多个公共数据库对鉴定的3'aSNP及相关基因进行功能注释。最后,我们在GWMA [OR = 1.04 (1.02-1.06), P = 1.00 × 10-4]和验证阶段[OR = 1.08 (1.01-1.16), P = 1.01 × 10-2]和1p36.11中发现了潜在的3'aSNP rs11583258与肺癌风险相关。综合多个公开数据集结果的功能注释表明,该区域的变异可能同时影响UBXN11转录本的3'UTR长度和UBXN11的表达,从而影响肺癌的易感性。
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引用次数: 0
期刊
Journal of Human Genetics
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