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Corrigendum to “Integrative analysis of transcriptome and metabolome provide new insights into mechanisms of capilliposide A against cisplatin-induced nephrotoxicity” [J. Pharm. Biomed. Anal. 238 (2024), 115814] “转录组和代谢组的整合分析为毛脂苷A抗顺铂引起的肾毒性机制提供了新的见解”[J]。制药。生物医学。肛门。238 (2024),115814]
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-06-15 Epub Date: 2026-02-12 DOI: 10.1016/j.jpba.2026.117406
Jiaxi Fang , Luping Wang , Di Zhang , Yan Liang , Shouxin Li , Jingkui Tian , Qiang He , Juan Jin , Wei Zhu
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引用次数: 0
Cost-effective routine pharmaceutical testing using radial flow stream splitting HPLC columns: Quantitative analysis and performance metrics in the analysis of over-the-counter drugs 采用径向流分裂高效液相色谱柱的成本效益常规药物检测:非处方药分析中的定量分析和性能指标。
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-06-15 Epub Date: 2026-01-30 DOI: 10.1016/j.jpba.2026.117386
Michalina McDermott , Zachary Sargeant , Christopher E. Karlsen , Feng Li , R. Andrew Shalliker , Jake A. Cravino
The demand for rapid and reliable analytical methods in the pharmaceutical industry continues to grow, with Ultra-/High-Performance Liquid Chromatography (U/HPLC) remaining the gold standard for impurity profiling, quantification of active pharmaceutical ingredients, and degradation product analysis. However, traditional HPLC methods are often constrained by pressure limitations at higher flow rates, which can hinder analytical throughput. While recent advancements in column technology have improved performance, they typically exacerbate pressure-related challenges. In this study, we evaluate a novel column technology designed to address these limitations by enabling high-resolution separations at reduced pressures and increased flow rates. Our findings demonstrate that the column, when operated in Radial Flow Stream Splitting (RFS) mode, maintains quantitative accuracy and repeatability while achieving up to a 120 % improvement in separation efficiency and a 30 % reduction in backpressure compared to conventional operation. By way of assaying over-the-counter medication, we have found no difference in the quantitative reliability of the assay when in RFS vs stock mode, despite reducing the analysis time by up to 40 %.
制药行业对快速可靠的分析方法的需求持续增长,超高效液相色谱法(U/HPLC)仍然是杂质分析、活性药物成分定量和降解产物分析的金标准。然而,传统的HPLC方法在高流速下往往受到压力限制,这可能会阻碍分析通量。虽然柱技术的最新进步提高了性能,但它们通常会加剧与压力相关的挑战。在这项研究中,我们评估了一种新的色谱柱技术,该技术旨在解决这些限制,在降低压力和增加流量的情况下实现高分辨率分离。我们的研究结果表明,与传统操作相比,在径向流分裂(RFS)模式下操作的色谱柱,在保持定量准确性和重复性的同时,分离效率提高了120% %,背压降低了30% %。通过分析非处方药物,我们发现在RFS和库存模式下,尽管分析时间减少了40% %,但该分析的定量可靠性没有差异。
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引用次数: 0
Temperature as the primary risk factor for sevoflurane degradation: Identification and toxicological risk assessment of novel degradants by nuclear magnetic resonance (NMR) spectroscopy 温度是七氟醚降解的主要危险因素:核磁共振(NMR)光谱技术鉴定新型降解剂及毒理学风险评估。
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-06-15 Epub Date: 2026-02-04 DOI: 10.1016/j.jpba.2026.117391
Yi Jin , Yaning Li , Haoran Yang , Huiying Yang , Yaqing Guo , Xianfu Wu
Sevoflurane is an inhalation anesthetic, which is widely favored by anesthesiologists in modern clinical practice. It is reported that sevoflurane readily degrades under certain conditions. Forced degradation studies are essential for elucidating its degradation profile under stressed conditions, as recommended by the ICH guidelines. This study systematically assessed the impact of temperature, light, oxidation, and hydrolysis on sevoflurane stability through forced degradation studies. The results indicated that temperature was identified as the primary trigger for degradation, leading to the formation of four degradation products (DPs) (including the pharmacopeial-known Impurity C and three novel sevoflurane degradants H, I, and J) at 60℃ and 95℃. Light, oxidation, and hydrolysis had no significant effect under the tested conditions. The structures of all DPs were confirmed using nuclear magnetic resonance spectroscopy (NMR). Capitalizing on the inherent quantitative proficiency of this technique, we subsequently employed quantitative proton nuclear magnetic resonance spectroscopy (qHNMR) to determine the relative contents of these four DPs, which can further elucidate the degradation profile of sevoflurane. In silico toxicity and metabolic behavior of them were assessed by Derek Nexus and Meteor Nexus software, respectively. DPs H-J exhibited potential skin irritation/corrosion and sensitization effects across species, potentially attributable to alkyl aldehyde functional groups. All of our efforts are expected to provide guidance for the quality control and optimal storage of sevoflurane.
七氟醚是一种吸入性麻醉剂,在现代临床实践中受到麻醉医师的广泛青睐。据报道,七氟醚在一定条件下容易降解。根据ICH指南的建议,强制降解研究对于阐明其在压力条件下的降解概况至关重要。本研究通过强制降解研究系统地评估了温度、光照、氧化和水解对七氟醚稳定性的影响。结果表明,温度是降解的主要触发因素,在60℃和95℃下形成4种降解产物(包括药典中已知的杂质C和3种新型七氟烷降解物H、I和J)。光照、氧化和水解在测试条件下没有显著影响。所有DPs的结构都用核磁共振波谱(NMR)证实。利用该技术固有的定量能力,我们随后采用定量质子核磁共振波谱(qHNMR)测定了这四种DPs的相对含量,这可以进一步阐明七氟醚的降解谱。采用Derek Nexus和Meteor Nexus软件分别评价其硅毒性和代谢行为。DPs H-J在不同物种间表现出潜在的皮肤刺激/腐蚀和致敏效应,可能归因于烷基醛官能团。我们的所有努力都有望为七氟醚的质量控制和最佳储存提供指导。
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引用次数: 0
Simultaneous determination of three phosphatidylethanol homologues, 12 drugs and metabolites in whole blood by LC–MS/MS LC-MS/MS同时测定全血中3种磷脂酰乙醇同系物、12种药物及其代谢物。
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-06-15 Epub Date: 2026-01-09 DOI: 10.1016/j.jpba.2026.117337
Marisa H. Maria , Nuno R. Neng , Thomas Berg
The use of alcohol, legal and illicit substances poses great negative consequences on health and economy worldwide. LC-MS/MS allow simultaneous determination of multiple compounds in biological matrices. The aim of this study was to develop a LC-MS/MS method for the determination of the alcohol biomarker phosphatidylethanol (PEth) – including three homologues (PEth 16:0/18:1, PEth 16:0/18:2, PEth 18:0/18:1) - cocaine and three metabolites, and 8 other drugs in whole blood. Whole blood in K2EDTA tubes was prepared by liquid-liquid extraction using heptane/ethyl acetate/2-propanol (16:64:20, v:v:v). Chromatographic separation was achieved on an Acquity BEH C18 column (50 × 2.1 mm I.D., 1.7 µm particles). Mobile phase was 0.025 % ammonia, pH 10.7 (Solvent A) and methanol (Solvent B). The method was fully validated with isotope-labelled internal standards for 10 compounds. Inter-assay precision and accuracy were within ± 16 % for all analytes at five to seven tested concentrations. Recovery was within 42–79 % for 14 compounds and 11 % for benzoylecgonine. Matrix effects were within ± 25 % for most analytes. Internal standards compensated for matrix effects for compounds that had their own internal standards. A robust, precise, and accurate LC-MS/MS method for the determinations of three PEth homologues and 12 drugs and metabolites was, developed and validated. The method is valuable, especially for detecting polydrug use and alcohol consumption. To the best of our knowledge, this is the first LC-MS/MS method for the simultaneous determination of three PEth homologues and different drugs and metabolites.
酒精、合法和非法物质的使用对全世界的健康和经济造成了严重的负面影响。LC-MS/MS允许同时测定生物基质中的多种化合物。本研究的目的是建立一种LC-MS/MS测定全血中乙醇生物标志物磷脂酰乙醇(PEth)的方法,包括3种同系物(PEth 16:0/18:1、PEth 16:0/18:2、PEth 18:0/18:1)、可卡因和3种代谢物以及其他8种药物。采用庚烷/乙酸乙酯/2-丙醇(16:64:20,v:v:v)液-液萃取法制备K2EDTA管全血。采用Acquity BEH C18色谱柱(50 × 2.1 mm id, 1.7 µm颗粒)进行色谱分离。流动相为0.025 %氨气,pH为10.7(溶剂A),甲醇(溶剂B)。用同位素标记内标对10种化合物进行了验证。在5至7个测试浓度下,所有分析物的测定间精密度和准确度均在±16 %。14个化合物的回收率在42 ~ 79 %,苯甲酰茶碱的回收率为11 %。大多数分析物的基质效应在±25 %以内。对于有自己内标的化合物,内标可以补偿基质效应。建立了一种可靠、精确、准确的LC-MS/MS方法,用于测定三种PEth同源物和12种药物和代谢物。该方法具有一定的应用价值,尤其适用于多种药物的使用和酒精的检测。据我们所知,这是第一个同时测定三种PEth同源物和不同药物及其代谢物的LC-MS/MS方法。
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引用次数: 0
Three-dimensional high-performance liquid chromatographic determination of serine, threonine and allothreonine enantiomers in the d-amino acid oxidase deficient mice and rats 三维高效液相色谱法测定d-氨基酸氧化酶缺陷小鼠和大鼠体内丝氨酸、苏氨酸和异苏氨酸对映体。
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-06-15 Epub Date: 2026-01-08 DOI: 10.1016/j.jpba.2026.117348
Mai Oyaide , Takeyuki Akita , Chiharu Ishii , Yukiko Shimizu , Masashi Mita , Ryuichi Konno , Tadashi Okamura , Kenji Hamase
The amounts of the serine (Ser), threonine (Thr) and allothreonine (aThr) enantiomers were determined in tissues (cerebrum, cerebellum, pancreas, liver and kidney) and physiological fluids (plasma and urine) of rats and mice with deficiency of d-amino acid oxidase (DAO). DAO is an enzyme metabolizing d-amino acids in mammals and has been implicated in the pathophysiology of several diseases via the alteration of d-amino acids. To determine trace levels of the amino acid enantiomers, a three-dimensional (3D) HPLC system composed of reversed-phase, anion-exchange and chiral separations was designed and utilized. Prior to the 3D-HPLC analysis, the analytes were derivatized with 4-fluoro-7-nitro-2,1,3-benzoxadiazole to enhance the fluorescence detection sensitivity. By using the 3D-HPLC system, the tissues and physiological fluids of F344-Daoldao rats and B6DAO-/- mice (animals with the DAO deficiency) were analyzed. In both species, d-Ser levels were elevated in the absence of DAO activity except for the cerebrum. The amounts of d-Thr and d-aThr were increased in the cerebellum and kidney with the DAO deficiency while their amounts were almost the same in the other tissues and physiological fluids. These results indicated that the intrinsic d-Ser analogues were metabolized by DAO in mammals and further studies to clarify its physiological significance are expected.
测定了d-氨基酸氧化酶(DAO)缺乏大鼠和小鼠的组织(大脑、小脑、胰腺、肝脏和肾脏)和生理液体(血浆和尿液)中丝氨酸(Ser)、苏氨酸(Thr)和异素苏氨酸(aThr)对映体的含量。DAO是一种在哺乳动物体内代谢d-氨基酸的酶,并通过改变d-氨基酸参与多种疾病的病理生理。为了测定氨基酸对映体的痕量水平,设计并利用了由反相、阴离子交换和手性分离组成的三维高效液相色谱系统。在进行3D-HPLC分析之前,将分析物与4-氟-7-硝基-2,1,3-苯并恶二唑进行衍生化,以提高荧光检测灵敏度。采用3D-HPLC系统对f344 - DAO大鼠和B6DAO-/-小鼠(DAO缺乏症动物)的组织和生理体液进行分析。在这两个物种中,除大脑外,在没有DAO活性的情况下,d-Ser水平升高。d-Thr和d-aThr在DAO缺乏症患者的小脑和肾脏中含量升高,而在其他组织和生理体液中含量几乎相同。这些结果表明,内在的d-丝氨酸类似物在哺乳动物中被DAO代谢,需要进一步的研究来阐明其生理意义。
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引用次数: 0
In memoriam of Professor Sándor Görög 为纪念Sándor Görög教授。
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-06-15 Epub Date: 2026-02-04 DOI: 10.1016/j.jpba.2026.117395
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引用次数: 0
Development and validation of a sensitive and rapid UHPLC-MS/MS method for the simultaneous quantification of CG-0255 and its active metabolite in human plasma and its application to Phase I studies 高效液相色谱-质谱联用同时定量人血浆中CG-0255及其活性代谢物的方法的建立与验证及其在I期研究中的应用
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-06-15 Epub Date: 2026-02-02 DOI: 10.1016/j.jpba.2026.117390
Hanjing Chen , Jiali Li , Fei Yuan , Gongxin He , Hao Wu , Hua Yan , Hongrong Xu , Chao Liu , Lei Sheng , Xuening Li
CG-0255, a thiol prodrug of clopidogrel’s active metabolite H4 (CG-0236), is a novel thienopyridine P2Y12 receptor antagonist under initial clinical development for the treatment of acute coronary syndromes. Unlike clopidogrel, CG-0255 is converted to the active thiol metabolite H4 (CG-0236) in a single hydrolytic step. Compared with clopidogrel, CG-0255 exhibits more efficient and consistent H4 formation in humans, which can be quantified in plasma following either intravenous or oral administration. In this study, we developed and validated a sensitive, rapid, and robust UHPLC–MS/MS method for the simultaneous quantification of CG-0255 and its derivatized active metabolite (MP-H4, CG-0261) in human plasma. After solid-phase extraction from 94.5 μL of plasma, analytes and isotope-labeled internal standards were separated on an ACQUITY UPLC BEH C18 column (2.1 mm × 50 mm, 1.7 μm) using isocratic elution with 0.1 % formic acid in water and acetonitrile (57:43, v/v) at a flow rate of 0.5 mL/min, followed by a 3.5 min column washing and re-equilibration, giving a total analytical run time of 7 min. Baseline separation of CG-0255, CG-0261, and their respective isomers was achieved. Detection was performed using positive electrospray ionization in multiple reaction monitoring mode on a Q-Trap 6500+ mass spectrometer. Calibration curves were linear over 0.05–25 ng/mL for both analytes, corresponding to 0.0353–17.65 ng/mL for H4 (CG-0236). Intra- and inter-day precision and accuracy were within ±15 % at all quality-control levels. The validated assay was successfully applied to two phase I clinical studies conducted at our center, characterizing the pharmacokinetics of CG-0255 following single-dose intravenous and multiple-dose oral administration. This UHPLC–MS/MS method provides a reliable platform for the quantitative evaluation of CG-0255 and its active metabolite in human plasma, and is well suited to support further global clinical development.
CG-0255是氯吡格雷活性代谢物H4 (CG-0236)的巯基前药,是一种新型噻吩吡啶P2Y12受体拮抗剂,正在初步临床开发中,用于治疗急性冠状动脉综合征。与氯吡格雷不同,CG-0255在一个水解步骤中转化为活性硫醇代谢物H4 (CG-0236)。与氯吡格雷相比,CG-0255在人体内表现出更有效和一致的H4形成,可以在静脉或口服给药后在血浆中量化。在本研究中,我们建立并验证了一种灵敏、快速、稳健的UHPLC-MS/MS同时定量人血浆中CG-0255及其衍生活性代谢物(MP-H4, CG-0261)的方法。固相萃取94.5 μL血浆后,用ACQUITY UPLC BEH C18色谱柱(2.1 mm × 50 mm, 1.7 μm)分离分析物和同位素标记的内标物,用0.1 %甲酸水溶液和乙腈(57:43,v/v)等压洗脱,流速0.5 mL/min,洗涤3.5 min,再平衡,总分析运行时间7 min。对CG-0255、CG-0261及其异构体进行了基线分离。在Q-Trap 6500+质谱仪上采用多反应监测模式下的正电喷雾电离进行检测。两种分析物的校准曲线在0.05-25 ng/mL范围内呈线性,对应于H4 (CG-0236)的校准曲线为0.0353-17.65 ng/mL。在所有质量控制水平下,日内、日间精密度和准确度均在±15 %以内。验证的检测方法已成功应用于我们中心进行的两项I期临床研究,表征了CG-0255单剂量静脉注射和多剂量口服给药后的药代动力学。该UHPLC-MS/MS方法为CG-0255及其在人血浆中的活性代谢物的定量评价提供了可靠的平台,非常适合支持进一步的全球临床开发。
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引用次数: 0
A streamlined workflow for early phase formulation development of monoclonal antibodies comprising multi-attribute method and ligand binding assay 单克隆抗体早期配方开发的流线型工作流程,包括多属性方法和配体结合试验。
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-06-15 Epub Date: 2026-01-30 DOI: 10.1016/j.jpba.2026.117379
Rachel Smith , Colin Guy , Rosie Upton , Sam Clawson , Henry Fisher , Mohammad Adam Nasar , David Firth , Allan Watkinson
A streamlined early phase formulation development workflow has been developed for monoclonal antibodies (mAbs) to provide a more efficient process, driving down costs and reducing timelines, without compromising the quality and hence patient safety. The proposed novel workflow combines liquid chromatography-mass spectrometry multi-attribute method (LC-MS MAM) and sensitive ligand binding using surface plasmon resonance (SPR). By linking the two methodologies it is possible to obtain a comprehensive understanding of a mAb’s critical quality attributes (CQAs) and provide a structure/function correlation. As LC-MS MAM cannot address all aspects of degradation, high throughput methods for the analysis of high molecular weight material (HMWM), and conformational and colloidal stability, were also evaluated. The workflow comprises an initial forced degradation study, to verify stability-indication and identify potential degradation routes. Secondly, optimal pH, based on conformational and colloidal stability, is determined. Finally, stabilising excipients are evaluated by design of experiment (DoE). We have verified this workflow using pembrolizumab. In an initial forced degradation study, LC-MS MAM and PD-1 ligand binding could identify the CQAs. Met105 oxidation, located in the CDR3 region, was identified as the major CQA. DoE demonstrated that 25 mM methionine inhibited Met105 oxidation and stabilised PD-1 binding. With this streamlined process, we were able to improve the stability of the protein by formulating in 20 mM histidine, 25 mM methionine, 0.02 % PS80 and 300 mM sucrose, at pH 5.5. The described workflow has the potential to decrease the demand for precious early development material as well as reduce costs and shorten timelines.
为单克隆抗体(mab)开发了一个简化的早期配方开发工作流程,以提供更有效的流程,降低成本和缩短时间,同时不影响质量和患者安全。该工作流程结合了液相色谱-质谱多属性方法(LC-MS MAM)和表面等离子体共振(SPR)的敏感配体结合。通过将这两种方法联系起来,可以全面了解单抗的关键质量属性(cqa),并提供结构/功能相关性。由于LC-MS MAM无法解决降解的所有方面,因此还评估了用于分析高分子量材料(HMWM)的高通量方法,以及构象和胶体稳定性。该工作流程包括初始的强制退化研究,以验证稳定性指示并识别潜在的退化路线。其次,根据构象和胶体稳定性确定最佳pH值。最后,通过实验设计(DoE)对稳定辅料进行评价。我们已经使用派姆单抗验证了这一工作流程。在最初的强制降解研究中,LC-MS MAM和PD-1配体结合可以识别CQAs。位于CDR3区的Met105氧化被确定为主要的CQA。实验结果表明,25 mM蛋氨酸抑制了Met105的氧化并稳定了PD-1的结合。通过这种流线型工艺,我们能够通过在pH 5.5下配制20 mM组氨酸,25 mM蛋氨酸,0.02 % PS80和300 mM蔗糖来提高蛋白质的稳定性。所描述的工作流程具有减少对宝贵的早期开发材料的需求以及降低成本和缩短时间的潜力。
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引用次数: 0
Fecal metabolic biomarkers associated with insomnia severity: A study on 5-hydroxyindoleacetic acid, octopamine, oleoylethanolamide, and elaidic acid 与失眠严重程度相关的粪便代谢生物标志物:5-羟基吲哚乙酸、章鱼胺、油基乙醇酰胺和elaidi酸的研究
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-06-15 Epub Date: 2026-02-01 DOI: 10.1016/j.jpba.2026.117387
Yinuo Wu , Xiaoli Li , Haixia Feng , Yifan Chen , Wenwen Wu , Siqin Wang
Insomnia is increasingly recognized as a disorder with complex metabolic underpinnings. We investigated the changes in fecal metabolite levels of 5-hydroxyindoleacetic acid (5-HIAA), octopamine (OA), oleoylethanolamide (OEA), and elaidic acid (EA) in patients with sleep disorders, as well as their correlations with insomnia severity. Sixty participants were divided into two groups, with thirty patients with sleep disorders hospitalized in the Department of Neurology, Zhongda Hospital, Southeast University (October 2024–March 2025) and 30 healthy controls recruited during the same period. Fecal samples were collected from all participants, and metabolite levels were analyzed via untargeted metabolomics analysis using liquid chromatography-mass spectrometry (LC-MS). The Chinese version of the Insomnia Severity Index (C-ISI) was employed to evaluate insomnia severity, and the correlations between insomnia severity and these four metabolites were subjected to statistical analysis. Both univariate and multivariate analyses revealed significant metabolic differences between groups. The experimental group showed significantly lower levels of 5-HIAA (FC = 0.947, P = 0.020) and OA (FC = 0.953, P < 0.001), but higher OEA (FC = 1.101, P < 0.001) and EA (FC = 1.026, P < 0.001). C-ISI scores correlated negatively with 5-HIAA (r = -0.380, P = 0.003) and OA (r = -0.448, P < 0.001), and positively with OEA (r = 0.500, P < 0.001) and EA (r = 0.408, P = 0.001). These fecal metabolites associate with insomnia severity and may serve as potential biomarkers for understanding its pathophysiology and developing interventions.
人们越来越认识到失眠是一种复杂代谢基础的疾病。我们研究了睡眠障碍患者粪便代谢物5-羟基吲哚乙酸(5-HIAA)、章鱼胺(OA)、油基乙醇酰胺(OEA)和elaidic酸(EA)水平的变化及其与失眠严重程度的相关性。60名受试者分为两组,选取东南大学中大医院神经内科住院的睡眠障碍患者30例(2024年10月- 2025年3月)和同期招募的健康对照30例。收集所有参与者的粪便样本,并通过液相色谱-质谱(LC-MS)非靶向代谢组学分析分析代谢物水平。采用中文版失眠症严重程度指数(C-ISI)评估失眠严重程度,并对失眠严重程度与上述四种代谢物的相关性进行统计分析。单因素和多因素分析均显示各组之间的代谢差异显著。实验组5-HIAA (FC = 0.947, P = 0.020)和OA (FC = 0.953, P . 0.05)水平显著低于对照组
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引用次数: 0
Detection and localization of single-nucleotide mutations in synthetic oligonucleotides by ultra-high-performance liquid chromatography coupled with high-resolution tandem mass spectrometry 合成寡核苷酸单核苷酸突变的超高效液相色谱-高分辨率串联质谱检测与定位。
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-06-15 Epub Date: 2026-01-30 DOI: 10.1016/j.jpba.2026.117384
Mohamed A. Gab-Allah , Hyojin Hwang , Mingyu Kim , Ngoc-Trinh Tran , Bong Jik Kim , Minyoung Kim , Jin Hee Han , Yehree Kim , Byung Yoon Choi , Jeongkwon Kim
Accurate detection of point mutations in mitochondrial DNA (mtDNA) is crucial for diagnosing various mitochondrial disorders. In this study, we developed an ultra-high-performance liquid chromatography coupled with high-resolution tandem mass spectrometry (UHPLC–HRMS/MS) method for the direct, label-free identification and localization of single-nucleotide mutations using synthetic 20- and 49-mer oligonucleotides as model fragments representing the pathogenic mtDNA point mutation (mt.3243 A>G). Three mobile phase systems, including ammonium bicarbonate (ABC), triethylamine/hexafluoroisopropanol (TEA/HFIP), and tributylamine/HFIP (TBA/HFIP), were systematically evaluated to assess their effects on oligonucleotide retention behavior and duplex stability under denaturing and non-denaturing conditions. The ABC buffer provided optimal performance for maintaining partial duplex integrity, while TEA/HFIP offered superior ionization efficiency for single-stranded analysis. Deconvoluted mass spectra revealed accurate monoisotopic mass differences between wild-type and mutant oligonucleotides, including ∼ + 16 Da for the sense strand (A>G), ∼ –15 Da for the antisense strand (T > C), and ∼ + 1 Da for the duplex, enabling confident mutation discrimination at the intact molecular level. High-resolution MS achieved excellent mass accuracy within ±3 ppm, and high-energy collision dissociation (HCD) MS/MS enabled sequence-specific fragmentation that localized the mutation site with high confidence when compared with theoretical fragments. Overall, this study establishes a reliable analytical framework for mutation detection in oligonucleotide models and highlights the potential of UHPLC–HRMS/MS as a complementary tool for targeted mtDNA fragment analysis.
准确检测线粒体DNA (mtDNA)点突变对于诊断各种线粒体疾病至关重要。在这项研究中,我们开发了一种超高效液相色谱-高分辨率串联质谱(UHPLC-HRMS/MS)方法,使用合成的20和49聚寡核苷酸作为代表致病性mtDNA点突变(mt.3243 A>G)的模型片段,直接、无标记地鉴定和定位单核苷酸突变。系统评价了碳酸氢铵(ABC)、三乙胺/六氟异丙醇(TEA/HFIP)和三乙胺/HFIP (TBA/HFIP)三种流动相体系在变性和非变性条件下对寡核苷酸保留行为和双相稳定性的影响。ABC缓冲液为维持部分双链完整性提供了最佳性能,而TEA/HFIP为单链分析提供了优越的电离效率。反卷积质谱揭示了野生型和突变型寡核苷酸之间精确的单同位素质量差异,包括义链(A>G)的~ + 16 Da,反义链(T > C)的~ -15 Da和双链的~ + 1 Da,从而在完整分子水平上实现了自信的突变识别。高分辨率质谱在±3 ppm范围内获得了出色的质量精度,与理论片段相比,高能碰撞解离(HCD)质谱/质谱使序列特异性片段具有高可信度,可以定位突变位点。总的来说,本研究为寡核苷酸模型的突变检测建立了一个可靠的分析框架,并强调了UHPLC-HRMS/MS作为靶向mtDNA片段分析的补充工具的潜力。
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引用次数: 0
期刊
Journal of pharmaceutical and biomedical analysis
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