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A readily interpretable rule involving multiple forms of pairwise molecule comparisons with applications for clinical make-decision of breast cancer management 一个容易解释的规则,涉及多种形式的两两分子比较与乳腺癌管理的临床决策应用
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-01-07 DOI: 10.1016/j.jpba.2026.117347
Xin Huang , Jingyu Chen , Xinyu He
Cells of breast cancer (BC) can metastasize to lymph nodes or other organs and is the high leading cause of female cancer deaths. Efforts to improve the performance of early detection and precise treatment are urgent and important for BC management. In clinical application, compared with highly complex classification functions, precise, simple and biologically interpretable algorithms can strengthen the understanding of disease development and facilitate the personalization of therapeutic strategies. In this study, a novel readily interpretable decision rule involving multiple forms of molecular relationship (RI-MFR) was proposed for cancer clinical management applications. In RI-MFR, linear and nonlinear pairwise molecule comparisons were comprehensively analyzed by a joint probability mass function for the identification of top scoring pairs from high dimensional biomolecular data. Based on the selected few molecule pairs, accurate, readily interpretable decision rules were inferred to provide biological insight as to how classification was performed. RI-MFR can effectively eliminate the influence of sample variability caused by individual differences. RI-MFR was successfully employed to analyze changes in metabolic mechanisms during BC development based on genomics datasets and metabolic alterations before and after BC therapy using our metabolomic profiling. The experimental results indicated that genes and metabolites involving in the glycosphingolipid metabolism may be the crucial factors associated with BC development and contribute to the enhanced effectiveness of BC treatment. Compared with other algorithms, RI-MFR had the significantly better classification results with p-values < 0.05, which suggested it is a more useful tool to identify important bioinformation for clinical BC management.
乳腺癌细胞可以转移到淋巴结或其他器官,是女性癌症死亡的主要原因。努力提高早期发现和精确治疗的表现对BC的管理是迫切和重要的。在临床应用中,与高度复杂的分类功能相比,精确、简单且具有生物可解释性的算法可以加强对疾病发展的理解,促进治疗策略的个性化。在这项研究中,提出了一种新的易于解释的决策规则,涉及多种形式的分子关系(RI-MFR),用于癌症临床管理。在RI-MFR中,通过联合概率质量函数综合分析线性和非线性成对分子比较,从高维生物分子数据中识别得分最高的对。基于所选择的少数分子对,推断出准确,易于解释的决策规则,以提供关于如何进行分类的生物学见解。RI-MFR可以有效消除个体差异带来的样本变异性的影响。利用我们的代谢组学分析,RI-MFR成功地分析了BC发展过程中代谢机制的变化,基于基因组学数据集和BC治疗前后的代谢变化。实验结果表明,参与鞘糖脂代谢的基因和代谢物可能是与BC发展相关的关键因素,并有助于提高BC治疗的有效性。与其他算法相比,RI-MFR的分类结果明显更好,p值为<; 0.05,这表明RI-MFR是一种更有用的识别临床BC管理重要生物信息的工具。
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引用次数: 0
Pathophysiological impacts of particulate matter exposure on respiratory health and emerging biomarkers for early detection 颗粒物暴露对呼吸健康的病理生理影响和早期检测的新兴生物标志物
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-01-06 DOI: 10.1016/j.jpba.2026.117339
Yen-Yi Lee , Guo-Ping Chang-Chien , Bo-Wun Huang , Balasubramanian Sriram , Sea-Fue Wang , Sakthivel Kogularasu , Meng-Chih Lin
Particulate matter (PM) is a significant and preventable environmental health hazard, closely associated with the initiation, progression, and exacerbation of respiratory diseases. The pathological effects of PM inhalation arise from the combined influence of its physicochemical properties and individual susceptibilities, triggering oxidative stress, inflammatory cascades, epithelial barrier disruption, and structural remodeling of lung tissue. This review synthesizes current knowledge on the compositional diversity and emission sources of PM, the underlying biological mechanisms of respiratory toxicity, and the emerging role of molecular biomarkers in early disease detection. Key biomarkers include inflammatory mediators such as IL-6 and TNF-α, oxidative stress indicators like 8-OHdG and MDA, epithelial injury markers including SP-D and CC16, and epigenetic regulators such as miRNA signatures and DNA methylation patterns. These biomarkers hold promise for identifying subclinical alterations in pulmonary function, enabling earlier intervention before irreversible damage occurs. However, progress is hindered by challenges in assay standardization, matrix-specific validation, and inter-individual variability. Advancing biomarker-based surveillance will require coordinated, multidisciplinary efforts integrating molecular biology, environmental toxicology, bioinformatics, and sensor technology. The integration of high-resolution biomarker science into environmental health frameworks offers transformative potential for predictive, preventive, and personalized strategies to mitigate the global burden of PM-related respiratory disease.
颗粒物(PM)是一种重大且可预防的环境健康危害,与呼吸系统疾病的发生、发展和恶化密切相关。PM吸入的病理效应是其理化性质和个体易感性的综合影响,引发氧化应激、炎症级联、上皮屏障破坏和肺组织结构重塑。本文综述了PM的组成多样性和排放源,呼吸毒性的潜在生物学机制以及分子生物标志物在早期疾病检测中的新作用。关键的生物标志物包括炎症介质如IL-6和TNF-α,氧化应激指标如8-OHdG和MDA,上皮损伤标志物如SP-D和CC16,以及表观遗传调节剂如miRNA特征和DNA甲基化模式。这些生物标志物有望识别肺功能的亚临床改变,从而在不可逆损伤发生之前进行早期干预。然而,在分析标准化、基质特异性验证和个体间可变性方面的挑战阻碍了进展。推进基于生物标志物的监测将需要协调、多学科的努力,整合分子生物学、环境毒理学、生物信息学和传感器技术。高分辨率生物标志物科学与环境卫生框架的整合为预测、预防和个性化策略提供了变革性潜力,以减轻pm相关呼吸系统疾病的全球负担。
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引用次数: 0
Revelation of metabolic pathways and potential targets associated with latent and active pulmonary tuberculosis via transcriptome and metabonomics analysis 通过转录组学和代谢组学分析揭示与潜伏性和活动性肺结核相关的代谢途径和潜在靶点
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-01-06 DOI: 10.1016/j.jpba.2026.117340
Yourou Zhou , Yiwei Shang , Qikai Luo , Mengjiao Xue , Yan Liu , Yunguang Wang , Juan Jin , Lifang Sun
Tuberculosis (TB) is one of the world's top ten causes of mortality. Current diagnostic methods, primarily based on microbiology and Polymerase Chain Reaction (PCR), still lack the ability to accurately distinguish between latent and active TB, highlighting the urgent need for more precise diagnostic strategies. In recent years, transcriptomics and metabolomics have become increasingly popular in elucidating disease pathophysiology. In this study, we used an integrated multi-omics approach, combining non-targeted metabolomics and transcriptomics to examine blood samples from 39 clinical participants. Our results revealed that Valine, leucine and isoleucine biosynthesis, Linoleic acid metabolism and Purine metabolism were strongly associated with the progression of pulmonary tuberculosis (PTB) infection. Furthermore, we identified glycerophospholipid metabolism as a key pathway involved in PTB, and proposed ABCC6, ABCG1, and PLA2G4A as potential biomarkers for discriminating between active PTB and latent TB infection (LTBI).
结核病是世界十大死亡原因之一。目前主要基于微生物学和聚合酶链反应(PCR)的诊断方法仍然缺乏准确区分潜伏性结核病和活动性结核病的能力,因此迫切需要更精确的诊断策略。近年来,转录组学和代谢组学在阐明疾病病理生理方面越来越受欢迎。在这项研究中,我们使用综合多组学方法,结合非靶向代谢组学和转录组学来检查来自39名临床参与者的血液样本。结果表明,缬氨酸、亮氨酸和异亮氨酸的生物合成、亚油酸代谢和嘌呤代谢与肺结核(PTB)感染的进展密切相关。此外,我们确定甘油磷脂代谢是参与PTB的关键途径,并提出ABCC6, ABCG1和PLA2G4A作为区分活动性PTB和潜伏性TB感染(LTBI)的潜在生物标志物。
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引用次数: 0
An online rapid screening HPLC system establishing and applying discovered a new type of natural chemical ligand of the BRD4-BD1 from Hedyotis diffusa 建立并应用的在线快速筛选高效液相色谱系统发现了白花蛇舌草BRD4-BD1的一种新型天然化学配体
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-01-05 DOI: 10.1016/j.jpba.2026.117336
Lina Wang, Hong Wang, Shizhong Chen
Herein, we report an online high performance liquid chromatography (HPLC) for screening of the bromodomain-containing protein 4-first bromodomain (BRD4-BD1) ligands, leading to screen a new type of natural chemical ligand of the BRD4-BD1 from Hedyotis diffusa. The system was first established, validated, and then applied for rapid screening the ligands of BRD4-BD1 from Hedyotis diffusa. It was investigated using the positive ligand JQ1 in five aspects including the suitability, the specificity, the reproductivity, the limit of detection (LOD), and the saturability of this system. When it was been applied to screen BRD4-BD1 ligands from Hedyotis diffusa, one candidate ligand 1 was fished out. Then the ligand 1 was isolated and identified. And their interaction between the screened ligand 1 and the BRD4-BD1 was assay on the online system again and followed verified by the surface plasmon resonance (SPR) technique. The molecular docking was performed to the binding mode of ligand 1 with BRD4-BD1. The ligand 1 was found as a new type of natural ligand for BRD4-BD1 protein. In a conclusion, we have systemically demonstrated the feasibility of the online HPLC system screening method applying to screen the chemical ligand of the BRD4-BD1 in complex substance systems. Besides, the ligand 1 provided a potential new type of scaffold for chemical modification for BRD4-BD1 inhibitors in future.
本文报道了利用高效液相色谱(HPLC)在线筛选含溴结构域蛋白4-第一溴结构域(BRD4-BD1)配体的方法,从白花蛇形草中筛选出一种新型的天然化学配体BRD4-BD1。首先建立并验证了该系统,然后将其应用于白花蛇舌草BRD4-BD1配体的快速筛选。采用正配体JQ1对该体系的适宜性、特异性、可重复性、检出限(LOD)和饱和性等5个方面进行了考察。应用该方法筛选白花蛇舌草BRD4-BD1配体时,筛选出1个候选配体1。然后分离鉴定配体1。筛选到的配体1与BRD4-BD1的相互作用在在线系统上再次测定,随后用表面等离子体共振(SPR)技术进行验证。对配体1与BRD4-BD1的结合方式进行分子对接。配体1是BRD4-BD1蛋白的一种新型天然配体。综上所述,我们系统地论证了在线HPLC系统筛选方法用于复杂物质体系中BRD4-BD1化学配体筛选的可行性。此外,配体1为BRD4-BD1抑制剂的化学修饰提供了一种潜在的新型支架。
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引用次数: 0
Pharmacokinetic investigation on eight primary active constituents of Weifuchun capsules in healthy and chronic atrophic gastritis model rats 胃复春胶囊八种主要活性成分在健康和慢性萎缩性胃炎模型大鼠体内的药动学研究。
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-01-05 DOI: 10.1016/j.jpba.2026.117335
Wentao Shao , Xinxin Zhao , Qiuya Zhou , Lvli Ma , Wei Zhang , Yi Tao
Weifuchun capsule (WC) is clinically employed in treating chronic atrophic gastritis (CAG), yet differences in its pharmacokinetic profile between normal and chronic atrophic gastritis model rats remain insufficiently characterized. In this study, a reliable and precise ultra-high performance liquid chromatography–tandem mass spectrometry method was developed and validated for the simultaneous quantification of eight major active constituents including p‑coumaric acid, ginsenoside Rg1, kaempferol, luteolin, hesperetin, apigenin, naringenin, and tangeretin in rat plasma. This method was subsequently applied to investigate the pharmacokinetics of Weifuchun capsule. A chronic atrophic gastritis model was established using a modified chemical stimulation method. Plasma samples were pretreated via protein precipitation with chloramphenicol as the internal standard and then analyzed. The intra- and inter-day precision for all eight analytes was below 6.32 %, with accuracies within ±5.19 %. Extraction recoveries ranged from 89.15 % to 112.50 %, and matrix effects were between 95.69 % and 104.83 %. All analytes demonstrated satisfactory stability under various storage conditions. The validated method was successfully applied to a comparative pharmacokinetic study. Compared with the normal group, the chronic atrophic gastritis model group exhibited significantly increased Cmax and AUC0→t values for ginsenoside Rg1, hesperetin, and naringenin (p < 0.05), along with significantly elevated Cmax for kaempferol and apigenin (p < 0.05). Additionally, t1/2 was significantly shortened for ginsenoside Rg1 and p-coumaric acid. These findings suggest enhanced absorption and accelerated elimination of certain bioactive components of Weifuchun capsules under chronic atrophic gastritis pathological conditions. The altered pharmacokinetic behavior of multiple active compounds of Weifuchun capsules in chronic atrophic gastritis model rats provides important insights into the pharmacological mechanisms of Weifuchun capsules in the treatment of chronic atrophic gastritis.
胃复春胶囊(WC)在临床上用于治疗慢性萎缩性胃炎(CAG),但其在正常大鼠和慢性萎缩性胃炎模型大鼠之间的药代动力学差异尚不清楚。本研究建立了一种可靠、精确的超高效液相色谱-串联质谱法,用于同时定量大鼠血浆中对香豆酸、人参皂苷Rg1、山奈酚、木犀草素、橙皮素、芹菜素、柚皮素和橙皮素8种主要有效成分。采用该方法对胃复春胶囊的药动学进行了研究。采用改良的化学刺激法建立慢性萎缩性胃炎模型。血浆样品以氯霉素为内标,用蛋白质沉淀法预处理后进行分析。8种分析物的日内、日间精密度均低于6.32 %,准确度在±5.19 %以内。提取回收率为89.15 % ~ 112.50 %,基质效应为95.69 % ~ 104.83 %。所有分析物在各种储存条件下均表现出令人满意的稳定性。该方法已成功应用于比较药代动力学研究。与正常组比较,慢性萎缩性胃炎模型组人参皂苷Rg1、橙皮素和柚皮素的Cmax和AUC0→t值显著升高(p 山奈酚和芹菜素的max (p 1/2)显著缩短,对香豆酸和人参皂苷Rg1的Cmax和AUC0→t值显著升高;这些结果提示,慢性萎缩性胃炎病理条件下,胃复春胶囊的某些生物活性成分吸收增强,消除加速。胃复春胶囊多种活性成分在慢性萎缩性胃炎模型大鼠体内药动学行为的改变,为胃复春胶囊治疗慢性萎缩性胃炎的药理机制提供了重要的认识。
{"title":"Pharmacokinetic investigation on eight primary active constituents of Weifuchun capsules in healthy and chronic atrophic gastritis model rats","authors":"Wentao Shao ,&nbsp;Xinxin Zhao ,&nbsp;Qiuya Zhou ,&nbsp;Lvli Ma ,&nbsp;Wei Zhang ,&nbsp;Yi Tao","doi":"10.1016/j.jpba.2026.117335","DOIUrl":"10.1016/j.jpba.2026.117335","url":null,"abstract":"<div><div>Weifuchun capsule (WC) is clinically employed in treating chronic atrophic gastritis (CAG), yet differences in its pharmacokinetic profile between normal and chronic atrophic gastritis model rats remain insufficiently characterized. In this study, a reliable and precise ultra-high performance liquid chromatography–tandem mass spectrometry method was developed and validated for the simultaneous quantification of eight major active constituents including <em>p</em>‑coumaric acid, ginsenoside Rg1, kaempferol, luteolin, hesperetin, apigenin, naringenin, and tangeretin in rat plasma. This method was subsequently applied to investigate the pharmacokinetics of Weifuchun capsule. A chronic atrophic gastritis model was established using a modified chemical stimulation method. Plasma samples were pretreated via protein precipitation with chloramphenicol as the internal standard and then analyzed. The intra- and inter-day precision for all eight analytes was below 6.32 %, with accuracies within ±5.19 %. Extraction recoveries ranged from 89.15 % to 112.50 %, and matrix effects were between 95.69 % and 104.83 %. All analytes demonstrated satisfactory stability under various storage conditions. The validated method was successfully applied to a comparative pharmacokinetic study. Compared with the normal group, the chronic atrophic gastritis model group exhibited significantly increased C<sub>max</sub> and AUC<sub>0→t</sub> values for ginsenoside Rg1, hesperetin, and naringenin (<em>p</em> &lt; 0.05), along with significantly elevated C<sub>max</sub> for kaempferol and apigenin (<em>p</em> &lt; 0.05). Additionally, t<sub>1/2</sub> was significantly shortened for ginsenoside Rg1 and <em>p</em>-coumaric acid. These findings suggest enhanced absorption and accelerated elimination of certain bioactive components of Weifuchun capsules under chronic atrophic gastritis pathological conditions. The altered pharmacokinetic behavior of multiple active compounds of Weifuchun capsules in chronic atrophic gastritis model rats provides important insights into the pharmacological mechanisms of Weifuchun capsules in the treatment of chronic atrophic gastritis.</div></div>","PeriodicalId":16685,"journal":{"name":"Journal of pharmaceutical and biomedical analysis","volume":"271 ","pages":"Article 117335"},"PeriodicalIF":3.1,"publicationDate":"2026-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145917927","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Importance in optimization of sample volume in the IgG-immunoaffinity UPLC-MS/MS assay for quantification of a therapeutic antibody in monkey serum igg免疫亲和超高效液相色谱-质谱/质谱法测定猴血清中治疗性抗体时样品体积优化的重要性
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-01-05 DOI: 10.1016/j.jpba.2026.117334
Kenji Kita , Yuji Mano
E6011 is a novel monoclonal antibody developed for the treatment of rheumatoid arthritis. Ultra-performance liquid chromatography coupled with tandem mass spectrometry (UPLC–MS/MS) has become increasingly important in the assays of therapeutic antibodies, yet achieving high sensitivity remains a major challenge. For the E6011 assay, an immunoaffinity (IgG-IA) method employing protein G in combination with UPLC-MS/MS was utilized and qualified in monkey serum. Method development revealed that increasing the matrix volume did not always lead to improved sensitivity when using a fixed volume of protein G magnetic beads, due to their limited capture capacity. Using only 1.8 µL of monkey serum, E6011 was quantitatively analyzed at concentrations as low as 1 µg/mL. Accuracy and precision were within ±20 %, meeting the acceptance criteria, however, the selectivity result at 1 µg/mL highlighted the need for evaluation of selectivity across multiple individuals. E6011 concentrations in monkey serum were determined using the IgG-IA-UPLC-MS/MS method, and the resulting pharmacokinetic parameters were comparable to those previously reported using UPLC-MS/MS with ammonium sulfate precipitation and a ligand-binding assay. These findings highlight the importance of optimizing matrix volume in assay development and demonstrate the successful application of the established method in a monkey pharmacokinetic study.
E6011是一种用于治疗类风湿性关节炎的新型单克隆抗体。超高效液相色谱-串联质谱(UPLC-MS /MS)在治疗性抗体的分析中越来越重要,但实现高灵敏度仍然是一个主要挑战。E6011检测采用免疫亲和(IgG-IA)法结合UPLC-MS/MS,并在猴血清中通过验证。方法的发展表明,当使用固定体积的蛋白G磁珠时,由于其捕获能力有限,增加基质体积并不总是导致灵敏度的提高。仅使用1.8 µL猴血清,E6011的定量分析浓度低至1 µg/mL。准确度和精密度均在±20 %以内,符合可接受标准。然而,1 µg/mL的选择性结果突出了对多个体选择性评估的必要性。采用IgG-IA-UPLC-MS/MS法测定猴血清中E6011的浓度,得到的药动学参数与先前报道的采用硫酸铵沉淀和配体结合法的UPLC-MS/MS法相当。这些发现突出了优化基质体积在分析开发中的重要性,并证明了所建立的方法在猴子药代动力学研究中的成功应用。
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引用次数: 0
Banxia Xiexin Decoction modulates short-chain fatty acid metabolism and mitigates ulcerative colitis by reshaping the intestinal microbiota 半夏泻心汤通过重塑肠道菌群调节短链脂肪酸代谢,减轻溃疡性结肠炎。
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-01-02 DOI: 10.1016/j.jpba.2025.117332
Ji Wanli , Song Xingyue , Liang Xinning , Zheng Yashuo , Qian Xiaojing , Hu Cheng , Huo Yan
Ulcerative colitis (UC) is a chronic inflammatory disorder that significantly impacts the quality of life for patients. Dysbiosis of gut microbiota and changes in short-chain fatty acid (SCFA) metabolism play a role in both the initiation and progression of UC. Banxia Xiexin Decoction (BXD), a formula in traditional Chinese medicine, has shown therapeutic effects; however, its underlying mechanism remains unclear. A rat model of colitis induced by dextran sulfate sodium (DSS) was created, and various doses of BXD were administered. The principal components of BXD were analyzed through high-pressure liquid chromatography (HPLC). In order to clarify the mechanisms, 16S rRNA sequencing, serum metabolomics, targeted profiling of SCFAs via gas chromatography-mass spectrometry (GC-MS), and assessments of enzyme activity were conducted. BXD exerted protective effects against DSS-induced UC, as indicated by attenuated histological damage and reduced expression of pro-inflammatory cytokines. Untargeted metabolomics revealed that BXD modulated multiple metabolic pathways, enhancing SCFA-related processes, such as propanoate and butanoate metabolism. GC–MS revealed that BXD could increase the level of acetate, propionate, butyrate, isobutyrate, valerate, isovalerate and hexanoate. Microbiome sequencing indicated that BXD increased the abundance of beneficial taxa (e.g. Firmicutes, Bacteroidetes), while reducing pro-inflammatory genera. Altogether, BXD restored the microbial balance and promoted anti-inflammatory metabolite production. Our results demonstrated that BXD ameliorated UC by reprogramming gut microbial composition and enhancing SCFA biosynthesis, thereby suppressing intestinal inflammation. The potential of BXD as a therapy aimed at the microbiota for UC is emphasized in these studies, which also offer mechanistic insights using multi-omics approaches.
溃疡性结肠炎(UC)是一种慢性炎症性疾病,严重影响患者的生活质量。肠道菌群的生态失调和短链脂肪酸(SCFA)代谢的变化在UC的发生和发展中都起着重要作用。中药配方半夏泻心汤(BXD)已显示出治疗效果;然而,其潜在机制尚不清楚。建立硫酸葡聚糖钠(DSS)致大鼠结肠炎模型,并给予不同剂量的BXD。采用高压液相色谱法(HPLC)分析了BXD的主要成分。为了阐明其机制,研究人员进行了16S rRNA测序、血清代谢组学、气相色谱-质谱(GC-MS)对SCFAs的靶向分析以及酶活性评估。BXD对dss诱导的UC具有保护作用,可以减轻组织损伤,降低促炎细胞因子的表达。非靶向代谢组学显示,BXD调节多种代谢途径,增强scfa相关过程,如丙酸和丁酸代谢。气相色谱-质谱分析表明,BXD能提高乙酸、丙酸、丁酸、异丁酸、戊酸、异戊酸和己酸的含量。微生物组测序表明,BXD增加了有益类群(如厚壁菌门,拟杆菌门)的丰度,同时减少了促炎属。总之,BXD恢复了微生物平衡,促进了抗炎代谢物的产生。我们的研究结果表明,BXD通过重新编程肠道微生物组成和增强SCFA生物合成来改善UC,从而抑制肠道炎症。这些研究强调了BXD作为针对UC微生物群的治疗方法的潜力,这些研究也提供了使用多组学方法的机制见解。
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引用次数: 0
Elucidating the effects of ginger processing on Magnolia bark: A multi-platform strategy linking chemical composition to taste and bioactivity 阐明生姜加工对厚朴树皮的影响:将化学成分与味道和生物活性联系起来的多平台策略
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-01-02 DOI: 10.1016/j.jpba.2026.117333
Zhiyan Xie , Haochen Wu , Huixian Qing , Yu Yin , Zicheng Ma , Guoqin Zhang , Meiqi Liu , Shiwei Chai , Xiaoliang Ren
Magnolia officinalis (Houpo, HP) is a prominent Traditional Chinese Medicine(TCM). Despite its traditional processing with ginger to reduce irritation, enhance efficacy, and improve taste, the underlying mechanisms connecting this chemical transformation to its sensory and gastrointestinal effects are not fully understood. Existing studies lack systematic analysis of shared targets across gastrointestinal diseases and the identification of quality markers (Q-markers), limiting scientific justification for its processing and clinical use. This study therefore applied an integrated UPLC-Q-TOF/MS, chemometrics, and network pharmacology approach to elucidate the effects of ginger processing. In this study a total of 46 batches of samples (22 raw, 24 ginger-processed) were analyzed by UPLC-Q-TOF/MS to identify and quantify chemical constituents. Chemometric models were used to discriminate sample types and identify potential Q-markers. The correlation between taste and chemical profiles was assessed using an electronic tongue combined with Pearson correlation analysis. Network pharmacology was employed to predict targets related to functional dyspepsia (FD), postoperative nausea and vomiting (PONV), and chronic gastritis (CG), followed by GO/KEGG enrichment analysis. Molecular docking was performed to validate binding affinities between key bioactive components and core targets. The experimental results showed that Fifty-four compounds were characterized, and chemometric models clearly distinguished raw from ginger-processed HP (Jianghoupo, JHP). Electronic tongue analysis revealed that Magnoloside A plays a key role in reducing bitterness after ginger processing. Network pharmacology identified 51 overlapping targets across FD, PONV, and CG, with AKT1, TNF, CTNNB1, IL1B, and STAT3 as core nodes in the network. Molecular docking confirmed stable binding between principal components and these targets. An integrative “component transformation–taste modulation–gastrointestinal regulation” model was established, illustrating how ginger processing improves both palatability and pharmacological efficacy. In summary, ginger processing transforms the chemical and sensory profiles of HP into a state of improved palatability and strengthened gastrointestinal regulatory function. These findings provide a mechanistic rationale and scientific foundation for the traditional processing practice of combining ginger with HP in clinical use.
厚朴(Magnolia officinalis,厚朴,HP)是一种著名的中药。尽管传统的生姜加工方法可以减少刺激,提高功效,改善口感,但将这种化学转化与感觉和胃肠道作用联系起来的潜在机制尚未完全了解。现有研究缺乏对胃肠道疾病共有靶点的系统分析和质量标记(q标记)的鉴定,限制了其加工和临床应用的科学依据。因此,本研究采用综合UPLC-Q-TOF/MS、化学计量学和网络药理学方法来阐明生姜加工的作用。本研究采用UPLC-Q-TOF/MS对46批生姜样品(22批生料,24批加工姜)进行化学成分鉴定和定量分析。化学计量模型用于区分样品类型和识别潜在的q标记。味觉和化学特征之间的相关性使用电子舌结合Pearson相关分析进行评估。采用网络药理学预测与功能性消化不良(FD)、术后恶心呕吐(PONV)和慢性胃炎(CG)相关的靶点,然后进行GO/KEGG富集分析。通过分子对接验证关键生物活性成分与核心靶点之间的结合亲和力。实验结果表明,共鉴定了54个化合物,化学计量模型清晰地区分了生姜和姜后坡。电子舌分析表明,厚朴皂苷A在生姜加工后的苦味减轻中起关键作用。网络药理学鉴定出FD、PONV和CG中的51个重叠靶点,其中AKT1、TNF、CTNNB1、IL1B和STAT3是网络中的核心节点。分子对接证实了主成分与这些靶点之间的稳定结合。建立了“成分转化-味觉调节-胃肠调节”的综合模型,说明生姜加工如何提高口感和药理功效。综上所述,生姜加工将HP的化学和感官特征转变为改善适口性和增强胃肠道调节功能的状态。这些发现为临床应用姜与HP结合的传统加工实践提供了机理依据和科学依据。
{"title":"Elucidating the effects of ginger processing on Magnolia bark: A multi-platform strategy linking chemical composition to taste and bioactivity","authors":"Zhiyan Xie ,&nbsp;Haochen Wu ,&nbsp;Huixian Qing ,&nbsp;Yu Yin ,&nbsp;Zicheng Ma ,&nbsp;Guoqin Zhang ,&nbsp;Meiqi Liu ,&nbsp;Shiwei Chai ,&nbsp;Xiaoliang Ren","doi":"10.1016/j.jpba.2026.117333","DOIUrl":"10.1016/j.jpba.2026.117333","url":null,"abstract":"<div><div><em>Magnolia officinalis</em> (Houpo, HP) is a prominent Traditional Chinese Medicine(TCM). Despite its traditional processing with ginger to reduce irritation, enhance efficacy, and improve taste, the underlying mechanisms connecting this chemical transformation to its sensory and gastrointestinal effects are not fully understood. Existing studies lack systematic analysis of shared targets across gastrointestinal diseases and the identification of quality markers (Q-markers), limiting scientific justification for its processing and clinical use. This study therefore applied an integrated UPLC-Q-TOF/MS, chemometrics, and network pharmacology approach to elucidate the effects of ginger processing. In this study a total of 46 batches of samples (22 raw, 24 ginger-processed) were analyzed by UPLC-Q-TOF/MS to identify and quantify chemical constituents. Chemometric models were used to discriminate sample types and identify potential Q-markers. The correlation between taste and chemical profiles was assessed using an electronic tongue combined with Pearson correlation analysis. Network pharmacology was employed to predict targets related to functional dyspepsia (FD), postoperative nausea and vomiting (PONV), and chronic gastritis (CG), followed by GO/KEGG enrichment analysis. Molecular docking was performed to validate binding affinities between key bioactive components and core targets. The experimental results showed that Fifty-four compounds were characterized, and chemometric models clearly distinguished raw from ginger-processed HP (Jianghoupo, JHP). Electronic tongue analysis revealed that Magnoloside A plays a key role in reducing bitterness after ginger processing. Network pharmacology identified 51 overlapping targets across FD, PONV, and CG, with AKT1, TNF, CTNNB1, IL1B, and STAT3 as core nodes in the network. Molecular docking confirmed stable binding between principal components and these targets. An integrative “component transformation–taste modulation–gastrointestinal regulation” model was established, illustrating how ginger processing improves both palatability and pharmacological efficacy. In summary, ginger processing transforms the chemical and sensory profiles of HP into a state of improved palatability and strengthened gastrointestinal regulatory function. These findings provide a mechanistic rationale and scientific foundation for the traditional processing practice of combining ginger with HP in clinical use.</div></div>","PeriodicalId":16685,"journal":{"name":"Journal of pharmaceutical and biomedical analysis","volume":"272 ","pages":"Article 117333"},"PeriodicalIF":3.1,"publicationDate":"2026-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145928867","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Separation of mephentermine from other structural analogues of phenethylamine and amphetamine in biological matrices using Liquid Chromatography-Tandem Mass Spectrometry 用液相色谱-串联质谱法分离生物基质中苯乙胺和安非他明的其它结构类似物
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-31 DOI: 10.1016/j.jpba.2025.117328
Tusha Tripathi , Kamna Sharma , Awanish Upadhyay , Ashok Singh , Puran Lal Sahu , Tarun Handa , Meghna Choudhary , Bikash Medhi
Stimulants exert euphorigenic and relaxing effects which warrant intervention of regulatory authorities in non-medical usage of these doping agents. Thus, a semi-quantitative method utilizing Ultra-High-Performance Liquid Chromatography-Tandem Mass Spectrometry (UHPLC-MS/MS) was developed to monitor potential misuse of 10 structural analogues of amphetamine and phenylethylamine derivatives. The extraction protocol for urine was dilute and shoot (DS) with 1 mL aliquot size, while that for plasma/serum was solid-phase extraction (SPE) with a 100 µL aliquot size. Chromatographic separation was achieved over an 18-minute gradient on a Phenomenex Luna Omega UHPLC C18 column. The mobile phase consisted of water and acetonitrile, both containing formic acid as a modifier, specifically at 1 % (v/v) for urine and 0.1 % (v/v) for plasma/serum analyses. Positive electrospray ionization (ESI+) was employed for mass spectrometric detection with acquisition in multiple reaction monitoring (MRM) mode. Method validation was performed in accordance with World Anti-Doping Agency (WADA) requirements for analyzing prohibited substances with minimum reporting limits (MRLs). Limits of identification (LOI) determined for urine and plasma/serum matrices were as follows: 0.5 ng/mL and 1 ng/mL for Oxethazaine; 1 ng/mL and 2.5 ng/mL for BHPT and BHMPT; 12.5 ng/mL and 25 ng/mL for PT and 5 ng/mL and 12.5 ng/mL for MPT, NEAMP, DMAMP, 4MMAMP, NEBMPEA and NNBTPEA, respectively. An analytical method characterized by rapidity, simplicity and cost-effectiveness was implemented for the chromatographic separation of stimulant structural analogues, facilitating the determination of potential stimulant abuse within human performance sports.
兴奋剂发挥令人兴奋和放松的作用,这就要求监管当局干预这些兴奋剂的非医疗使用。为此,建立了一种利用超高效液相色谱-串联质谱(UHPLC-MS/MS)的半定量方法来监测安非他明和苯乙胺衍生物的10种结构类似物的潜在滥用。尿液的提取方法为1 mL稀释萃取(DS),血浆/血清的提取方法为100 µL固相萃取(SPE)。在Phenomenex Luna Omega UHPLC C18柱上进行18分钟梯度色谱分离。流动相由水和乙腈组成,两者都含有甲酸作为调节剂,尿液的浓度为1 % (v/v),血浆/血清的浓度为0.1 % (v/v)。采用多反应监测(MRM)模式,采用正电喷雾电离(ESI+)进行质谱检测。方法验证按照世界反兴奋剂机构(WADA)对最低报告限量(MRLs)禁用物质分析的要求进行。尿液和血浆/血清基质的检出限(LOI)分别为0.5 ng/mL和1 ng/mL;BHPT和BHMPT分别为1 ng/mL和2.5 ng/mL;PT分别为12.5 ng/mL和25 ng/mL, MPT、NEAMP、DMAMP、4MMAMP、NEBMPEA和NNBTPEA分别为5 ng/mL和12.5 ng/mL。本研究建立了一种快速、简便、经济高效的兴奋剂结构类似物色谱分离分析方法,有助于确定人类竞技运动中潜在的兴奋剂滥用情况。
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引用次数: 0
A general strategy to screen and evaluate antitussive, anti-inflammatory, and expectorant active components from raw and honey-fired Farfarae Flos based on β2-AR/CysLT1R/M3R chromatography and mice models 基于β2-AR/ cysllt1r /M3R层析和小鼠模型筛选和评价生生和蜜烧法罗止咳、抗炎和祛痰活性成分的一般策略
IF 3.1 3区 医学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-30 DOI: 10.1016/j.jpba.2025.117331
Yaqi Wang, Ping Shu, Mei Lv, Yonghao Xing, Haoran Zhang, Xiaojing Yan, Bo Wang, Tingting Huang, Minfeng Fang
Farfarae Flos and its honey-processed product are used to treat respiratory diseases; yet their active components and therapeutic targets remained unclear. Herein, we developed an integrated strategy combining receptor chromatography and mice models to screen and evaluate active components in both raw and honey-processed Farfarae Flos. We focused on three key receptors,β2-AR, CysLT1R, and M3R, known to be involved in antitussive, anti-inflammatory, and expectorant activities. These receptors were immobilized onto silica gels to construct affinity columns. Using these columns, we identified the bioactive compounds in both forms of Farfarae Flos. The results revealed an identical set of target-specific compounds across raw and honey-processed samples: chlorogenic acid (CGA) and caffeic acid (CA) targeted β2-AR; CGA and rutin bound to CysLT1R; and CGA along with isochlorogenic acids A, B, and C interacted with M3R. Notably, the interactions of rutin with CysLT1R and isochlorogenic acids A, B, and C with M3R are reported for the first time. These findings indicate that both raw and honey-fired Farfarae Flos share the same material basis for their antitussive, anti-inflammatory, and expectorant effects, with no significant alteration in pharmacological efficacy due to honey processing. Furthermore, the binding affinities of the bioactive compounds for the receptors correlated well with the molecular docking-predicted binding energies of the corresponding compound-receptor complexes. To our knowledge, this study represents the first target-centric comparative analysis of raw and processed Farfarae Flos. It establishes a generalizable framework for investigating processing-induced changes in herbal pharmacology and provides empirical evidence connecting metabolomic profiles to clinical efficacy.
Farfarae Flos及其蜂蜜加工产品用于治疗呼吸系统疾病;然而,它们的有效成分和治疗靶点尚不清楚。在此,我们开发了一种结合受体色谱法和小鼠模型的综合策略来筛选和评估原始和蜂蜜加工的Farfarae Flos中的活性成分。我们专注于三个关键受体,β2-AR, cysllt1r和M3R,已知参与镇咳,抗炎和祛痰活动。将这些受体固定在硅胶上构建亲和柱。利用这些色谱柱,我们鉴定了两种形式的法法拉花中的生物活性化合物。结果显示,在原料和蜂蜜加工样品中,有一组相同的靶向特异性化合物:绿原酸(CGA)和咖啡酸(CA)靶向β2-AR;CGA和芦丁与cysllt1r结合;CGA和异绿原酸A、B和C与M3R相互作用。值得注意的是,芦丁与cysllt1r和异绿原酸A、B和C与M3R的相互作用是首次报道。这些发现表明,生的和蜂蜜烧制的Farfarae Flos具有相同的止咳、抗炎和祛痰作用的物质基础,并且没有因蜂蜜加工而显着改变其药理功效。此外,生物活性化合物对受体的结合亲和力与相应化合物-受体复合物的分子对接预测结合能密切相关。据我们所知,这项研究代表了第一个以目标为中心的对生的和加工的Farfarae Flos的比较分析。它为研究加工引起的草药药理学变化建立了一个可推广的框架,并提供了将代谢组学特征与临床疗效联系起来的经验证据。
{"title":"A general strategy to screen and evaluate antitussive, anti-inflammatory, and expectorant active components from raw and honey-fired Farfarae Flos based on β2-AR/CysLT1R/M3R chromatography and mice models","authors":"Yaqi Wang,&nbsp;Ping Shu,&nbsp;Mei Lv,&nbsp;Yonghao Xing,&nbsp;Haoran Zhang,&nbsp;Xiaojing Yan,&nbsp;Bo Wang,&nbsp;Tingting Huang,&nbsp;Minfeng Fang","doi":"10.1016/j.jpba.2025.117331","DOIUrl":"10.1016/j.jpba.2025.117331","url":null,"abstract":"<div><div>Farfarae Flos and its honey-processed product are used to treat respiratory diseases; yet their active components and therapeutic targets remained unclear. Herein, we developed an integrated strategy combining receptor chromatography and mice models to screen and evaluate active components in both raw and honey-processed Farfarae Flos. We focused on three key receptors,β<sub>2</sub>-AR, CysLT<sub>1</sub>R, and M<sub>3</sub>R, known to be involved in antitussive, anti-inflammatory, and expectorant activities. These receptors were immobilized onto silica gels to construct affinity columns. Using these columns, we identified the bioactive compounds in both forms of Farfarae Flos. The results revealed an identical set of target-specific compounds across raw and honey-processed samples: chlorogenic acid (CGA) and caffeic acid (CA) targeted β<sub>2</sub>-AR; CGA and rutin bound to CysLT<sub>1</sub>R; and CGA along with isochlorogenic acids A, B, and C interacted with M<sub>3</sub>R. Notably, the interactions of rutin with CysLT<sub>1</sub>R and isochlorogenic acids A, B, and C with M<sub>3</sub>R are reported for the first time. These findings indicate that both raw and honey-fired Farfarae Flos share the same material basis for their antitussive, anti-inflammatory, and expectorant effects, with no significant alteration in pharmacological efficacy due to honey processing. Furthermore, the binding affinities of the bioactive compounds for the receptors correlated well with the molecular docking-predicted binding energies of the corresponding compound-receptor complexes. To our knowledge, this study represents the first target-centric comparative analysis of raw and processed Farfarae Flos. It establishes a generalizable framework for investigating processing-induced changes in herbal pharmacology and provides empirical evidence connecting metabolomic profiles to clinical efficacy.</div></div>","PeriodicalId":16685,"journal":{"name":"Journal of pharmaceutical and biomedical analysis","volume":"271 ","pages":"Article 117331"},"PeriodicalIF":3.1,"publicationDate":"2025-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145911637","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Journal of pharmaceutical and biomedical analysis
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