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Computational approaches for toxicology and Pharmacokinetic properties prediction. 毒理学和药代动力学性质预测的计算方法。
IF 2.8 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-09-04 DOI: 10.1007/s10928-025-09999-y
Navid Kaboudi, Tara Shekari, Ali Shayanfar, Andre Silva Pimentel

Pharmacokinetics and toxicological studies how the body reacts to a specific administered substance, such as a drug, toxin, or food. Each substance experiences these four steps: absorption, distribution, metabolism, and excretion, which are the main parameters in pharmacokinetics studies. Many toxic endpoints exist. There are three main ways to measure toxicology and pharmacokinetic parameters: in vivo, in vitro, and in-silico. Knowing toxicological and pharmacokinetic parameters before developing a new drug candidate could save time and resources, as clinical studies are highly cost-demanding. This review aims to gather studies using in-silico methodologies to predict pharmacokinetic properties.

药代动力学和毒理学研究人体对特定物质如药物、毒素或食物的反应。每一种物质都经历了吸收、分布、代谢和排泄四个步骤,这是药代动力学研究的主要参数。存在许多有毒的终点。有三种主要的方法来测量毒理学和药代动力学参数:体内,体外和计算机。在开发新的候选药物之前了解毒理学和药代动力学参数可以节省时间和资源,因为临床研究的成本很高。本综述旨在收集使用计算机方法预测药代动力学性质的研究。
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引用次数: 0
APOE4 genotypes and the trajectory of biomarkers, neuroimaging, and cognitive measures in Alzheimer's Disease: A mixed-effects disease progression model. APOE4基因型与阿尔茨海默病生物标志物、神经影像学和认知测量的轨迹:一种混合效应疾病进展模型
IF 2.8 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-08-30 DOI: 10.1007/s10928-025-09996-1
Carson Essenburg, Murali Ramanathan

Background: The ε4 allele of the apolipoprotein E gene (APOE4) is a major risk factor for developing sporadic Alzheimer's disease (AD). APOE4 homozygosity has been recently proposed as the defining signature of a genetic form of AD. The goal was to assess the role, if any, of APOE4 in AD progression using a mixed-effects disease progression model-informed approach.

Methods: Data from the Alzheimer's Disease Neuroimaging Initiative (ADNI) were analyzed for 2092 participants categorized as cognitively normal (CN), subjective memory concerns (SMC), early mild cognitive impairment (EMCI), late mild cognitive impairment (LMCI), or AD. Each included subject had a median of 5.00 (IQR: 3-8) follow-ups; there were n = 13,699 follow-ups. Demographics, APOE4 genotype, cerebrospinal fluid biomarkers, MRI measures, and neuropsychological tests from baseline to 6-years of follow-up visits were analyzed. Linear mixed-effects models were used to evaluate the impact of the APOE4 genotype on disease progression.

Results: APOE4 heterozygous and homozygous frequencies were higher in AD vs. CN (p < 0.001). APOE4-positive groups were associated with lower levels of amyloid β1-42, higher levels of Tau and phosphorylated tau-181 proteins, lower hippocampus and entorhinal volumes, and worse AD Assessment Scale Cognitive-11 (ADAS-COG11), ADAS-COG13, and Mini-Mental State Examination neuropsychological test scores. The progression of the biomarkers over time was not associated with APOE4 positivity. The progression of all MRI measures and neuropsychological test scores was associated with APOE4 positivity.

Conclusions: APOE4 genotypes adversely influence the levels of biomarkers and the progression of neuroimaging and cognitive outcomes in AD.

背景:载脂蛋白E基因(APOE4)的ε4等位基因是发生散发性阿尔茨海默病(AD)的主要危险因素。APOE4纯合性最近被认为是AD遗传形式的决定性特征。目的是使用混合效应疾病进展模型来评估APOE4在AD进展中的作用(如果有的话)。方法:分析来自阿尔茨海默病神经影像学倡议(ADNI)的2092名参与者的数据,这些参与者被分类为认知正常(CN)、主观记忆问题(SMC)、早期轻度认知障碍(EMCI)、晚期轻度认知障碍(LMCI)或AD。每个纳入的受试者随访的中位数为5.00 (IQR: 3-8);共有n = 13,699名随访者。从基线到6年的随访分析了人口统计学、APOE4基因型、脑脊液生物标志物、MRI测量和神经心理学测试。线性混合效应模型用于评估APOE4基因型对疾病进展的影响。结果:APOE4杂合子和纯合子频率在AD患者中高于CN患者(p)。结论:APOE4基因型对AD患者生物标志物水平、神经影像学和认知预后的进展产生不利影响。
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引用次数: 0
Sample size determination for cardiodynamic ECG assessment using the Concentration-QTc analysis method. 使用浓度- qtc分析方法确定心电动力学心电图评估的样本量。
IF 2.8 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-08-28 DOI: 10.1007/s10928-025-09998-z
Hongqi Xue, Georg Ferber, Ellen Freebern, Borje Darpo

Concentration-QTc (C-QTc) analysis was accepted to serve as an alternative to the by-time point analysis with intersection-union test (IUT) as the primary basis for decisions to classify the arrhythmogenic risk of a drug by ICH E14 Q&As (R3) in December 2015. Since then, this analysis method has been widely applied by industry as it significantly reduces the sample size to achieve the same power as with IUT. There are many model-based power calculation approaches available for C-QTc through simulation in the literature, however, there is still no standard method with a clear formula to determine the sample size for C-QTc analysis to exclude a small effect on the QTc interval. The current model-based simulation approaches are too complicated to prevent them from being widely used, which is not commensurate with the popular status. We have developed a systematic method based on t-tests to determine the sample size for different study designs using the C-QTc analysis method and applied it to many studies. The results of the sample sizes utilizing this method are consistent with simulation studies and validated by real analyses.

2015年12月,ICH E14 Q&As (R3)认可浓度- qtc (C-QTc)分析可替代按时间点分析、交叉结合试验(IUT)作为判定药物致心律失常风险的主要依据。从那时起,这种分析方法被广泛应用于工业,因为它大大减少了样本量,达到了与IUT相同的功率。文献中对C-QTc进行仿真的基于模型的功率计算方法有很多,但尚没有明确公式确定C-QTc分析的样本量以排除对QTc区间的小影响的标准方法。目前基于模型的仿真方法由于过于复杂而无法得到广泛应用,这与当前的流行状况不相称。我们开发了一种基于t检验的系统方法,使用C-QTc分析方法来确定不同研究设计的样本量,并将其应用于许多研究。该方法的样本量计算结果与模拟结果一致,并得到了实际分析结果的验证。
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引用次数: 0
Dos and don'ts for concentration - QTc analysis as primary analysis for assay sensitivity assessment. 浓度- QTc分析作为测定敏感性评价的主要分析的注意事项。
IF 2.8 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-08-23 DOI: 10.1007/s10928-025-09994-3
Dalong Huang
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引用次数: 0
Pharmacometrics education for all by overcoming language barriers to enhance global collaboration. 全民药物计量学教育,克服语言障碍,加强全球合作。
IF 2.8 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-07-30 DOI: 10.1007/s10928-025-09991-6
Sonia Khier, Anna H-X P Chan Kwong, Maud Harnichard, Sihem Ait-Oudhia

Proficiency in English is essential in scientific disciplines; however, it is unevenly distributed globally, creating barriers for those with limited training. Research in neuroscience supports the benefits of teaching in a student's native language. Consequently, pharmacometrics, a complex and growing field, stands to gain significantly from overcoming language barriers to better train future scientists. One effective strategy is to offer pharmacometrics education in various languages, particularly in regions with low English proficiency, such as French-speaking African countries. Recently, two French-led pharmacometrics training programs were conducted in Africa, demonstrating the positive impact of such initiatives. These programs are adaptable to other countries and languages, and ultimately, they could contribute to global health improvements by making pharmacometrics education more accessible worldwide.

精通英语在科学领域是必不可少的;然而,它在全球分布不均,给那些受过有限培训的人造成了障碍。神经科学的研究支持用学生的母语教学的好处。因此,药物计量学这一复杂且不断发展的领域,将从克服语言障碍以更好地培养未来的科学家中获益良多。一个有效的策略是提供多种语言的药物计量学教育,特别是在英语水平较低的地区,如讲法语的非洲国家。最近,在非洲开展了两个由法国牵头的药物计量学培训项目,显示了此类举措的积极影响。这些项目适用于其他国家和语言,最终,它们可以通过使药物计量学教育在世界范围内更容易获得,为改善全球健康做出贡献。
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引用次数: 0
Correction: Cross-species translational modelling of targeted therapeutic oligonucleotides using physiologically based pharmacokinetics. 更正:使用基于生理的药代动力学的靶向治疗性寡核苷酸的跨物种翻译模型。
IF 2.8 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-07-30 DOI: 10.1007/s10928-025-09993-4
Abdallah Derbalah, Felix Stader, Cong Liu, Adriana Zyla, Tariq Abdulla, Qier Wu, Masoud Jamei, Iain Gardner, Armin Sepp
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引用次数: 0
Lessons learned from QT prolongation risk assessment for antibody-drug conjugates in oncology. 肿瘤中抗体-药物偶联物QT间期延长风险评估的经验教训。
IF 2.8 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-07-28 DOI: 10.1007/s10928-025-09988-1
Shruti D Shah, Roxanne C Jewell, Geraldine Ferron-Brady, Sandra A G Visser

Antibody-drug conjugates (ADCs) are advanced cancer therapeutics that link monoclonal antibodies to cytotoxic drugs, enhancing targeted delivery to tumors. Since the FDA's first ADC approval in 2000, 14 ADCs have received approval to date (March 2025), underscoring their therapeutic value across cancer types. A prolonged QT interval is a known risk factor for the development of torsades de pointes (TdP), a potentially fatal ventricular arrhythmia. Therefore, assessing and mitigating the potential for QT prolongation is a fundamental aspect of drug development, especially for oncology therapeutics where patients may already be at an increased risk of cardiovascular complications or receiving other QT-prolonging drugs. Traditional QT risk assessment, as outlined in the ICH E14 guidance, is challenging in oncology due the safety profile of anticancer drugs, which precludes study in healthy participants, and the ethical complications of placebo-controlled studies in patients with cancer; therefore, dedicated QT studies and/or concentration-corrected QT (QTc) assessments have been used as alternative approaches. This review investigates QT risk assessment for FDA-approved ADCs, examining nonclinical and clinical approaches and summarizing the strategies used in informing each ADC's labeling. Findings suggest that ADCs generally exhibit low proarrhythmic risk, attributed to the low systemic concentration of their payloads, and minimal QT effects have been observed in clinical settings. This analysis advocates a streamlined, fit-for-purpose QT risk assessment strategy in ADC development, reducing reliance on dedicated QT studies and promoting integrated assessments in early-phase trials. This approach can optimize ADC safety evaluation, supporting ongoing innovation and therapeutic application in oncology.

抗体-药物偶联物(adc)是一种先进的癌症治疗方法,它将单克隆抗体与细胞毒性药物连接起来,增强对肿瘤的靶向递送。自2000年FDA批准首个ADC以来,迄今为止(2025年3月)已有14个ADC获得批准,强调了其对癌症类型的治疗价值。QT间期延长是一种已知的致死性室性心律失常(TdP)的危险因素。因此,评估和减轻QT间期延长的可能性是药物开发的一个基本方面,特别是对于肿瘤治疗,患者可能已经处于心血管并发症风险增加或接受其他QT间期延长药物。传统的QT风险评估,如ICH E14指南所述,在肿瘤学领域具有挑战性,因为抗癌药物的安全性,排除了在健康参与者中进行研究,以及在癌症患者中进行安慰剂对照研究的伦理并发症;因此,专门的QT研究和/或浓度校正QT (QTc)评估已被用作替代方法。本综述调查了fda批准的ADC的QT风险评估,检查了非临床和临床方法,并总结了用于告知每种ADC标签的策略。研究结果表明,adc通常表现出较低的心律失常风险,这归因于其有效负荷的低全身浓度,并且在临床环境中观察到最小的QT效应。该分析提倡在ADC开发中采用一种简化的、符合目的的QT风险评估策略,减少对专门QT研究的依赖,并促进早期试验的综合评估。这种方法可以优化ADC的安全性评估,支持肿瘤领域的持续创新和治疗应用。
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引用次数: 0
Practical guide to concentration-QTc modeling: a hands-on tutorial. 实用指南集中- qtc建模:一个动手教程。
IF 2.8 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-07-26 DOI: 10.1007/s10928-025-09981-8
Joanna Parkinson, Corina Dota, Dinko Rekić

Concentration-QTc (C-QTc) analysis is a model-based method widely used to assess the impact of drugs on QT interval duration. C-QTc modelling was enabled to be used after the publication of the International Council for Harmonisation (ICH) E14 Questions and Answers guidance document in 2015, followed by the Scientific White Paper on C-QTc modelling (Garnett et al. J Pharmacokinet Pharmacodyn 45(3):383-397 2018), which included technical details and recommendations on how to perform and report the modelling. This hands-on tutorial aims to provide a practical implementation of the recommended C-QTc modelling methodology, including R code to perform the complete analysis, from data formatting to model predictions. The target audience is scientists who will perform C-QTc analyses. The tutorial uses real data from a previously published QT study by (Johannesen et al.Clin Pharmacol Ther 96(5):549-558 2014), focusing on two active treatments (dofetilide and verapamil) and placebo to illustrate positive and negative QT signals. The methodology implemented in this tutorial follows the recommendations outlined in the White paper. This tutorial includes practical steps for preparing an analysis-ready dataset, conducting exploratory data analysis, fitting the linear mixed effects (LME) model, assessing model performance and estimating the upper limit of the two-sided 90% confidence interval (CI) of baseline and placebo-corrected QTc (ΔΔQTc). Reproducibility of this workflow is ensured through the use of pkgr to manage R packages. The R codes provided as part of this tutorial were successfully used for several projects within the AstraZeneca portfolio and accepted by health authorities as part of QTc submissions.

浓度- qtc (C-QTc)分析是一种基于模型的方法,广泛用于评估药物对QT间期持续时间的影响。在2015年国际协调委员会(ICH) E14问答指导文件发布后,C-QTc建模得以使用,随后是关于C-QTc建模的科学白皮书(Garnett et al.)。J Pharmacokinet Pharmacodyn 45(3):383-397 2018),其中包括关于如何执行和报告建模的技术细节和建议。本实践教程旨在提供推荐的C-QTc建模方法的实际实现,包括R代码来执行从数据格式化到模型预测的完整分析。目标受众是将进行C-QTc分析的科学家。本教程使用了先前发表的QT研究的真实数据(Johannesen et al. clinclinpharmacol, 96(5):549-558 2014),重点关注两种积极治疗(多非利特和维拉帕米)和安慰剂,以说明阳性和阴性QT信号。本教程中实现的方法遵循白皮书中概述的建议。本教程包括准备分析就绪数据集的实际步骤,进行探索性数据分析,拟合线性混合效应(LME)模型,评估模型性能以及估计基线和安慰剂校正QTc的双侧90%置信区间(CI)上限(ΔΔQTc)。通过使用pkgr来管理R包,确保了该工作流的可重复性。作为本教程的一部分提供的R代码已成功地用于阿斯利康产品组合中的几个项目,并被卫生当局接受为QTc提交的一部分。
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引用次数: 0
A semi-mechanistic population pharmacokinetic-pharmacodynamic model to assess downstream drug-target effects on erythropoiesis. 半机制群体药代动力学-药效学模型评估下游药物靶点对红细胞生成的影响。
IF 2.8 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-07-24 DOI: 10.1007/s10928-025-09990-7
S Viktor Rognås, Franziska Schaedeli Stark, Maddalena Marchesi, Hanna E Silber Baumann, João A Abrantes

Erythropoiesis is a complex process that results in the production of erythrocytes from hematopoietic stem cells in the bone marrow. This work aimed to develop a population pharmacokinetic-pharmacodynamic (PKPD) model describing erythropoiesis and hemoglobin synthesis following bitopertin, an inhibitor of glycine transporter 1 (GlyT1), administration. Data from a Phase 1 clinical trial in 67 healthy subjects administered bitopertin (10, 30, or 60 mg) or placebo for 120 days were analyzed. Hematological assessments included erythrocyte and reticulocyte counts, immature reticulocyte fraction, hemoglobin concentration, and mean corpuscular hemoglobin. The proposed semi-mechanistic model, which leverages data and physiological knowledge, was found to adequately simultaneously describe the dose- and time-dependent changes in the biomarkers. The framework was used to illustrate the potential outcome of hypothetical drug-target interactions at distinct stages of erythropoiesis and hemoglobin synthesis, exemplifying its usefulness in a clinical setting.

红细胞生成是一个复杂的过程,其结果是由骨髓中的造血干细胞产生红细胞。本研究旨在建立一个群体药代动力学-药效学(PKPD)模型,描述糖氨酸转运蛋白1 (GlyT1)抑制剂bitopertin给药后的红细胞生成和血红蛋白合成。对67名健康受试者进行了为期120天的1期临床试验数据进行了分析,受试者分别服用了bitopertin(10、30或60 mg)或安慰剂。血液学评估包括红细胞和网织红细胞计数、未成熟网织红细胞分数、血红蛋白浓度和平均红细胞血红蛋白。所提出的半机制模型,利用数据和生理学知识,被发现可以充分地同时描述生物标志物的剂量和时间依赖性变化。该框架用于说明在红细胞生成和血红蛋白合成的不同阶段假设的药物靶点相互作用的潜在结果,举例说明其在临床环境中的实用性。
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引用次数: 0
Quantifying clinical and genetic factors influencing rate and severity of autosomal dominant tubulointerstitial kidney disease progression. 量化影响常染色体显性小管间质肾病进展率和严重程度的临床和遗传因素。
IF 2.8 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2025-07-24 DOI: 10.1007/s10928-025-09989-0
Shyam S Ramesh, Mark Rogge, Kendrah O Kidd, Adrienne H Williams, Deok Yong Yoon, Julie Roignot, Katherine Blakeslee, Anthony J Bleyer, Sarah Kim

Autosomal dominant tubulointerstitial kidney disease (ADTKD), caused by mutations in UMOD and MUC1 genes, leads to tubular damage and fibrosis, ultimately resulting in kidney failure (KF). This study investigated clinical and genetic factors influencing the rate and severity of ADTKD progression by developing quantitative models. An estimated glomerular filtration rate (eGFR) of 10 mL/min/1.73 m2 was used to define KF, corresponding to dialysis initiation. Natural history data from the Wake Forest University School of Medicine study were used to develop the models for UMOD (n = 371) and MUC1 (n = 233) disease types (age ≥ 18 years). Longitudinal change in eGFR and time-to-KF were quantified using nonlinear mixed-effects and parametric time-to-event modeling approaches, respectively, in Monolix (version 2024R1). Sigmoid Imax functions with steepness parameters varying before and after inflection points best captured eGFR decline. Patients with UMOD and MUC1 disease variants exhibited a similar initial shallow steepness ( 1), but after inflection, each declined rapidly. MUC1 patients progressed faster than UMOD during the post-inflection phase (γ₂ = 10.23 vs. 6.34). eGFR at first clinic visit (eGFR_FCV) and age at first clinic visit (AFCV) significantly affected between-subject variability in eGFR decline. A Weibull hazard function best described the time to KF. In UMOD, males reached Te (the age at which approximately 36.8% of individuals remain free from KF) 4 years earlier than females on average (β_Te_Male = -0.07), indicating faster progression in males. Older AFCV was associated with slower progression to KF (β_Te_AFCV = 0.59 for UMOD and 0.81 for MUC1). These models may help enable quantitative data-driven subgroup analysis in the future, optimizing inclusion/exclusion criteria for ADTKD clinical trials.

常染色体显性小管间质性肾病(ADTKD)由UMOD和MUC1基因突变引起,可导致小管损伤和纤维化,最终导致肾衰竭(KF)。本研究通过建立定量模型探讨影响ADTKD进展速度和严重程度的临床和遗传因素。估计肾小球滤过率(eGFR)为10 mL/min/1.73 m2,用于定义KF,对应于透析开始。使用来自维克森林大学医学院研究的自然历史数据来开发UMOD (n = 371)和MUC1 (n = 233)疾病类型(年龄≥18岁)的模型。在Monolix(版本2024R1)中,分别使用非线性混合效应和参数化时间到事件建模方法量化eGFR和时间到kf的纵向变化。陡峭度参数在拐点前后变化的Sigmoid Imax函数最能捕捉到eGFR的下降。UMOD和MUC1疾病变异体的患者表现出相似的初始浅陡度(≈1),但在感染后,均迅速下降。在感染后阶段,MUC1患者比UMOD患者进展更快(γ₂= 10.23 vs. 6.34)。首次就诊时eGFR (eGFR_FCV)和首次就诊时年龄(AFCV)显著影响受试者之间eGFR下降的变异性。威布尔风险函数最好地描述了到KF的时间。在UMOD中,男性平均比女性早4年达到Te(约36.8%的个体没有KF) (β_Te_Male = -0.07),表明男性的进展更快。老年AFCV与KF进展缓慢相关(UMOD的β_Te_AFCV = 0.59, MUC1的β_Te_AFCV = 0.81)。这些模型可能有助于在未来进行定量数据驱动的亚组分析,优化ADTKD临床试验的纳入/排除标准。
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引用次数: 0
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Journal of Pharmacokinetics and Pharmacodynamics
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