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Advancing cancer drug development with mechanistic mathematical modeling: bridging the gap between theory and practice. 利用机理数学建模推进癌症药物开发:弥合理论与实践之间的差距。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-06-21 DOI: 10.1007/s10928-024-09930-x
Alexander Kulesza, Claire Couty, Paul Lemarre, Craig J Thalhauser, Yanguang Cao

Quantitative predictive modeling of cancer growth, progression, and individual response to therapy is a rapidly growing field. Researchers from mathematical modeling, systems biology, pharmaceutical industry, and regulatory bodies, are collaboratively working on predictive models that could be applied for drug development and, ultimately, the clinical management of cancer patients. A plethora of modeling paradigms and approaches have emerged, making it challenging to compile a comprehensive review across all subdisciplines. It is therefore critical to gauge fundamental design aspects against requirements, and weigh opportunities and limitations of the different model types. In this review, we discuss three fundamental types of cancer models: space-structured models, ecological models, and immune system focused models. For each type, it is our goal to illustrate which mechanisms contribute to variability and heterogeneity in cancer growth and response, so that the appropriate architecture and complexity of a new model becomes clearer. We present the main features addressed by each of the three exemplary modeling types through a subjective collection of literature and illustrative exercises to facilitate inspiration and exchange, with a focus on providing a didactic rather than exhaustive overview. We close by imagining a future multi-scale model design to impact critical decisions in oncology drug development.

癌症生长、进展和个体治疗反应的定量预测模型是一个快速发展的领域。来自数学建模、系统生物学、制药业和监管机构的研究人员正在合作开发可应用于药物开发的预测模型,并最终应用于癌症患者的临床管理。建模范式和方法层出不穷,因此要对所有分支学科进行全面回顾具有挑战性。因此,根据需求衡量基本设计方面,权衡不同模型类型的机会和局限性至关重要。在本综述中,我们将讨论癌症模型的三种基本类型:空间结构模型、生态模型和以免疫系统为重点的模型。对于每种类型,我们的目标是说明哪些机制导致了癌症生长和反应的可变性和异质性,从而使新模型的适当结构和复杂性变得更加清晰。我们通过主观收集的文献和示例练习,介绍了三种示范性建模类型各自涉及的主要特征,以促进启发和交流,重点在于提供说教而非详尽的概述。最后,我们对未来的多尺度模型设计进行了设想,以影响肿瘤药物开发中的关键决策。
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引用次数: 0
A review of the physiological effects of microgravity and innovative formulation for space travelers. 回顾微重力的生理影响和针对太空旅行者的创新配方。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-08-20 DOI: 10.1007/s10928-024-09938-3
Jey Kumar Pachiyappan, Manali Patel, Parikshit Roychowdhury, Imrankhan Nizam, Raagul Seenivasan, Swathi Sudhakar, M R Jeyaprakash, Veera Venkata Satyanarayana Reddy Karri, Jayakumar Venkatesan, Priti Mehta, Sudhakar Kothandan, Indhumathi Thirugnanasambandham, Gowthamarajan Kuppusamy

During the space travel mission, astronauts' physiological and psychological behavior will alter, and they will start consuming terrestrial drug products. However, factors such as microgravity, radiation exposure, temperature, humidity, strong vibrations, space debris, and other issues encountered, the drug product undergo instability This instability combined with physiological changes will affect the shelf life and diminish the pharmacokinetic and pharmacodynamic profile of the drug product. Consequently, the physicochemical changes will produce a toxic degradation product and a lesser potency dosage form which may result in reduced or no therapeutic action, so the astronaut consumes an additional dose to remain healthy. On long-duration missions like Mars, the drug product cannot be replaced, and the astronaut may relay on the available medications. Sometimes, radiation-induced impurities in the drug product will cause severe problems for the astronaut. So, this review article highlights the current state of various space-related factors affecting the drug product and provides a comprehensive summary of the physiological changes which primarly focus on absorption, distribution, metabolism, and excretion (ADME). Along with that, we insist some of the strategies like novel formulations, space medicine manufacturing from plants, and 3D printed medicine for astronauts in longer-duration missions. Such developments are anticipated to significantly contribute to new developments with applications in both human space exploration and on terrestrial healthcare.

在执行太空旅行任务期间,宇航员的生理和心理行为会发生变化,并开始服用地球上的药物产品。然而,由于受到微重力、辐射、温度、湿度、强烈振动、太空碎片等因素的影响,药物产品会出现不稳定的情况,这种不稳定性加上生理变化会影响药物产品的保质期,并降低药物产品的药代动力学和药效学特征。因此,理化变化将产生有毒的降解产物和药效较低的剂型,从而可能导致治疗作用降低或无效,因此宇航员需要额外服用剂量以保持健康。在火星等长时间飞行任务中,药物产品无法更换,宇航员只能依靠现有药物。有时,药物中由辐射引起的杂质会给宇航员带来严重问题。因此,这篇综述文章重点介绍了影响药物的各种太空相关因素的现状,并全面总结了主要集中在吸收、分布、代谢和排泄(ADME)方面的生理变化。此外,我们还坚持采用一些策略,如新型配方、利用植物制造太空药物,以及为执行更长时间任务的宇航员提供 3D 打印药物。预计这些发展将极大地促进人类太空探索和地面医疗保健应用的新发展。
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引用次数: 0
Computing optimal drug dosing regarding efficacy and safety: the enhanced OptiDose method in NONMEM. 计算疗效和安全性方面的最佳药物剂量:NONMEM 中增强的 OptiDose 方法。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-10-08 DOI: 10.1007/s10928-024-09940-9
Freya Bachmann, Gilbert Koch, Robert J Bauer, Britta Steffens, Gabor Szinnai, Marc Pfister, Johannes Schropp

Recently, an optimal dosing algorithm (OptiDose) was developed to compute the optimal drug doses for any pharmacometrics model for a given dosing scenario. In the present work, we enhance the OptiDose concept to compute optimal drug dosing with respect to both efficacy and safety targets. Usually, these are not of equal importance, but one is a top priority, that needs to be satisfied, whereas the other is a secondary target and should be achieved as good as possible without failing the top priority target. Mathematically, this leads to state-constrained optimal control problems. In this paper, we elaborate how to set up such problems and transform them into classical unconstrained optimal control problems which can be solved in NONMEM. Three different optimal dosing tasks illustrate the impact of the proposed enhanced OptiDose method.

最近,我们开发了一种最佳用药剂量算法(OptiDose),用于计算任何药物计量学模型在给定剂量情况下的最佳用药剂量。在本研究中,我们对 OptiDose 概念进行了改进,以计算疗效和安全性目标方面的最佳药物剂量。通常,这两个目标的重要性并不相同,但其中一个是首要目标,必须满足,而另一个是次要目标,应在不影响首要目标的前提下尽可能实现。从数学上讲,这导致了状态受限的最优控制问题。本文阐述了如何设置此类问题,并将其转化为可在 NONMEM 中求解的经典无约束最优控制问题。三个不同的优化配料任务说明了所提出的增强型 OptiDose 方法的影响。
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引用次数: 0
A quantitative modeling framework to understand the physiology of the hypothalamic-pituitary-adrenal axis and interaction with cortisol replacement therapy. 了解下丘脑-垂体-肾上腺轴生理学以及与皮质醇替代疗法相互作用的定量模型框架。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-07-08 DOI: 10.1007/s10928-024-09934-7
Davide Bindellini, Robin Michelet, Linda B S Aulin, Johanna Melin, Uta Neumann, Oliver Blankenstein, Wilhelm Huisinga, Martin J Whitaker, Richard Ross, Charlotte Kloft

Congenital adrenal hyperplasia (CAH) is characterized by impaired adrenal cortisol production. Hydrocortisone (synthetic cortisol) is the drug-of-choice for cortisol replacement therapy, aiming to mimic physiological cortisol circadian rhythm. The hypothalamic-pituitary-adrenal (HPA) axis controls cortisol production through the pituitary adrenocorticotropic hormone (ACTH) and feedback mechanisms. The aim of this study was to quantify key mechanisms involved in the HPA axis activity regulation and their interaction with hydrocortisone therapy. Data from 30 healthy volunteers was leveraged: Endogenous ACTH and cortisol concentrations without any intervention as well as cortisol concentrations measured after dexamethasone suppression and single dose administration of (i) 0.5-10 mg hydrocortisone as granules, (ii) 20 mg hydrocortisone as granules and intravenous bolus. A stepwise model development workflow was used: A newly developed model for endogenous ACTH and cortisol was merged with a refined hydrocortisone pharmacokinetic model. The joint model was used to simulate ACTH and cortisol trajectories in CAH patients with varying degrees of enzyme deficiency, with or without hydrocortisone administration, and healthy individuals. Time-dependent ACTH-driven endogenous cortisol production and cortisol-mediated feedback inhibition of ACTH secretion processes were quantified and implemented in the model. Comparison of simulated ACTH and cortisol trajectories between CAH patients and healthy individuals showed the importance of administering hydrocortisone before morning ACTH secretion peak time to suppress ACTH overproduction observed in untreated CAH patients. The developed framework allowed to gain insights on the physiological mechanisms of the HPA axis regulation, its perturbations in CAH and interaction with hydrocortisone administration, paving the way towards cortisol replacement therapy optimization.

先天性肾上腺皮质增生症(CAH)的特点是肾上腺皮质醇分泌受损。氢化可的松(合成皮质醇)是皮质醇替代疗法的首选药物,旨在模拟皮质醇的昼夜生理节律。下丘脑-垂体-肾上腺(HPA)轴通过垂体促肾上腺皮质激素(ACTH)和反馈机制控制皮质醇的分泌。本研究旨在量化参与 HPA 轴活动调节的关键机制及其与氢化可的松疗法的相互作用。研究利用了 30 名健康志愿者的数据:内源性促肾上腺皮质激素(ACTH)和皮质醇浓度在没有任何干预的情况下,以及在地塞米松抑制和单剂量给药(i)0.5-10 毫克氢化可的松颗粒、(ii)20 毫克氢化可的松颗粒和静脉注射后测量的皮质醇浓度。采用逐步模型开发工作流程:新开发的内源性促肾上腺皮质激素和皮质醇模型与改进的氢化可的松药代动力学模型合并。联合模型用于模拟不同程度酶缺乏的 CAH 患者(无论是否服用氢化可的松)和健康人的促肾上腺皮质激素和皮质醇轨迹。该模型量化并实现了随时间变化的促肾上腺皮质激素驱动的内源性皮质醇分泌和皮质醇介导的促肾上腺皮质激素分泌反馈抑制过程。通过比较 CAH 患者和健康人的模拟促肾上腺皮质激素和皮质醇轨迹,可以发现在早晨促肾上腺皮质激素分泌高峰时间之前使用氢化可的松抑制未经治疗的 CAH 患者促肾上腺皮质激素过度分泌的重要性。所开发的框架有助于深入了解 HPA 轴调节的生理机制、其在 CAH 中的扰动以及与氢化可的松用药的相互作用,从而为优化皮质醇替代疗法铺平道路。
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引用次数: 0
Time Scale Calculus: a new approach to multi-dose pharmacokinetic modeling. 时标计算:多剂量药代动力学建模的新方法。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-07-25 DOI: 10.1007/s10928-024-09920-z
José Ricardo Arteaga-Bejarano, Santiago Torres

In this paper, we use Time Scale Calculus (TSC) to formulate and solve pharmacokinetic models exploring multiple dose dynamics. TSC is a mathematical framework that allows the modeling of dynamical systems comprising continuous and discrete processes. This characteristic makes TSC particularly suited for multi-dose pharmacokinetic problems, which inherently feature a blend of continuous processes (such as absorption, metabolization, and elimination) and discrete events (drug intake). We use this toolkit to derive analytical expressions for blood concentration trajectories under various multi-dose regimens across several flagship pharmacokinetic models. We demonstrate that this mathematical framework furnishes an alternative and simplified way to model and retrieve analytical solutions for multi-dose dynamics. For instance, it enables the study of blood concentration responses to arbitrary dose regimens and facilitates the characterization of the long-term behavior of the solutions, such as their steady state.

在本文中,我们使用时间尺度微积分(TSC)来建立和求解探索多剂量动态的药代动力学模型。时间尺度微积分是一种数学框架,可对由连续和离散过程组成的动态系统进行建模。这一特点使得 TSC 特别适合多剂量药代动力学问题,因为这些问题本身就具有连续过程(如吸收、代谢和消除)和离散事件(药物摄入)的混合特征。我们利用这一工具包推导出了几种旗舰药代动力学模型中各种多剂量方案下的血药浓度轨迹分析表达式。我们证明,这一数学框架为多剂量动力学建模和检索分析解决方案提供了另一种简化方法。例如,它可以研究任意剂量方案下的血药浓度反应,并有助于描述解的长期行为,如稳态。
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引用次数: 0
Virtual clinical trials via a QSP immuno-oncology model to simulate the response to a conditionally activated PD-L1 targeting antibody in NSCLC. 通过 QSP 免疫肿瘤学模型进行虚拟临床试验,模拟 NSCLC 对条件激活的 PD-L1 靶向抗体的反应。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-06-10 DOI: 10.1007/s10928-024-09928-5
Alberto Ippolito, Hanwen Wang, Yu Zhang, Vahideh Vakil, Aleksander S Popel

Recently, immunotherapies for antitumoral response have adopted conditionally activated molecules with the objective of reducing systemic toxicity. Amongst these are conditionally activated antibodies, such as PROBODY® activatable therapeutics (Pb-Tx), engineered to be proteolytically activated by proteases found locally in the tumor microenvironment (TME). These PROBODY® therapeutics molecules have shown potential as PD-L1 checkpoint inhibitors in several cancer types, including both effectiveness and locality of action of the molecule as shown by several clinical trials and imaging studies. Here, we perform an exploratory study using our recently published quantitative systems pharmacology model, previously validated for triple-negative breast cancer (TNBC), to computationally predict the effectiveness and targeting specificity of a PROBODY® therapeutics drug compared to the non-modified antibody. We begin with the analysis of anti-PD-L1 immunotherapy in non-small cell lung cancer (NSCLC). As a first contribution, we have improved previous virtual patient selection methods using the omics data provided by the iAtlas database portal compared to methods previously published in literature. Furthermore, our results suggest that masking an antibody maintains its efficacy while improving the localization of active therapeutic in the TME. Additionally, we generalize the model by evaluating the dependence of the response to the tumor mutational burden, independently of cancer type, as well as to other key biomarkers, such as CD8/Treg Tcell and M1/M2 macrophage ratio. While our results are obtained from simulations on NSCLC, our findings are generalizable to other cancer types and suggest that an effective and highly selective conditionally activated PROBODY® therapeutics molecule is a feasible option.

最近,抗肿瘤免疫疗法采用了条件激活分子,目的是减少全身毒性。其中包括条件激活抗体,如 PROBODY® 可激活疗法(Pb-Tx),这种抗体可被肿瘤微环境(TME)中的蛋白酶激活。这些 PROBODY® 疗法分子已在几种癌症类型中显示出作为 PD-L1 检查点抑制剂的潜力,包括几项临床试验和成像研究显示的分子的有效性和作用部位。在此,我们利用最近发表的定量系统药理学模型(该模型曾在三阴性乳腺癌 (TNBC) 中得到验证)进行了一项探索性研究,通过计算预测 PROBODY® 治疗药物与非修饰抗体相比的有效性和靶向特异性。我们首先分析了非小细胞肺癌(NSCLC)的抗 PD-L1 免疫疗法。作为第一个贡献,我们利用 iAtlas 数据库门户提供的 omics 数据改进了以前的虚拟患者选择方法,与以前发表在文献中的方法进行了比较。此外,我们的研究结果表明,掩蔽抗体可以保持其疗效,同时改善活性疗法在TME中的定位。此外,我们还通过评估反应对肿瘤突变负荷的依赖性(与癌症类型无关)以及对 CD8/Treg Tcell 和 M1/M2 巨噬细胞比率等其他关键生物标志物的依赖性,对模型进行了推广。虽然我们的结果是通过对 NSCLC 的模拟得出的,但我们的发现可以推广到其他癌症类型,并表明高效、高选择性的条件激活型 PROBODY® 治疗分子是一种可行的选择。
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引用次数: 0
Expansion of platform physiologically-based pharmacokinetic model for monoclonal antibodies towards different preclinical species: cats, sheep, and dogs. 将单克隆抗体基于平台生理学的药代动力学模型扩展到不同的临床前物种:猫、羊和狗。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2023-11-10 DOI: 10.1007/s10928-023-09893-5
Hsien-Wei Huang, Shengjia Wu, Ekram A Chowdhury, Dhaval K Shah

Monoclonal antibodies (mAbs) are becoming an important therapeutic option in veterinary medicine, and understanding the pharmacokinetic (PK) of mAbs in higher-order animal species is also important for human drug development. To better understand the PK of mAbs in these animals, here we have expanded a platform physiological-based pharmacokinetic (PBPK) model to characterize the disposition of mAbs in three different preclinical species: cats, sheep, and dogs. We obtained PK data for mAbs and physiological parameters for the three different species from the literature. We were able to describe the PK of mAbs following intravenous (IV) or subcutaneous administration in cats, IV administration in sheep, and IV administration dogs reasonably well by fixing the physiological parameters and just estimating the parameters related to the binding of mAbs to the neonatal Fc receptor. The platform PBPK model presented here provides a quantitative tool to predict the plasma PK of mAbs in dogs, cats, and sheep. The model can also predict mAb PK in different tissues where the site of action might be located. As such, the mAb PBPK model presented here can facilitate the discovery, development, and preclinical-to-clinical translation of mAbs for veterinary and human medicine. The model can also be modified in the future to account for more detailed compartments for certain organs, different pathophysiology in the animals, and target-mediated drug disposition.

单克隆抗体(mAbs)正在成为兽医学中的一种重要治疗选择,了解mAbs在高级动物物种中的药代动力学(PK)对人类药物开发也很重要。为了更好地了解单克隆抗体在这些动物中的PK,我们扩展了一个基于平台生理学的药代动力学(PBPK)模型,以表征单克隆抗体在三种不同的临床前物种中的分布:猫、羊和狗。我们从文献中获得了单克隆抗体的PK数据和三种不同物种的生理参数。通过固定生理参数并仅估计与单克隆抗体与新生儿Fc受体结合相关的参数,我们能够很好地描述猫静脉(IV)或皮下给药、绵羊静脉给药和狗静脉给药后单克隆抗体的PK。本文提出的平台PBPK模型为预测狗、猫和羊的单克隆抗体血浆PK提供了一个定量工具。该模型还可以预测作用位点可能所在的不同组织中的mAb PK。因此,本文提出的mAb-PBPK模型可以促进用于兽医和人类医学的mAb的发现、开发和临床前到临床的转化。该模型也可以在未来进行修改,以解释某些器官的更详细的分区、动物的不同病理生理学以及靶向介导的药物处置。
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引用次数: 0
An asymptotic description of a basic FcRn-regulated clearance mechanism and its implications for PBPK modelling of large antibodies. FcRn 调节的基本清除机制的渐近描述及其对大抗体 PBPK 建模的影响。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-06-24 DOI: 10.1007/s10928-024-09925-8
Csaba B Kátai, Shepard J Smithline, Craig J Thalhauser, Sieto Bosgra, Jeroen Elassaiss-Schaap

A basic FcRn-regulated clearance mechanism is investigated using the method of matched asymptotic expansions. The broader aim of the work is to obtain further insight on the mechanism, thereby providing theoretical support for future pharmacologically-based pharmacokinetic modelling efforts. The corresponding governing equations are first non-dimensionalised and the order of magnitudes of the model parameters are assessed based on their values reported in the literature. Under the assumption of high FcRn-binding affinity, analytical approximations are derived that are valid over the characteristic phases of the problem. Additionally, relatively simple equations relating clearance and AUC to physiological model parameters are derived, which are valid over the longest characteristic time scale of the problem. For lower to moderate doses clearance is effectively linear, whereas for higher doses it is nonlinear. It is shown that for all doses sufficiently high the leading-order approximation for the IgG concentration in plasma, over the longest characteristic time scale, is independent of the initial dose. This is because IgG that is in 'excess' of FcRn is eliminated over a time scale much shorter than that of the terminal phase. In conclusion, analytical approximations of the basic FcRn mechanism have been derived using matched asymptotic expansions, leading to a simple equation relating clearance to FcRn binding affinity, the ratio of degradation and FcRn concentration, and the volumes of the system.

利用匹配渐近展开法研究了基本的 FcRn 调节清除机制。这项工作的更广泛目标是进一步深入了解该机制,从而为未来基于药理学的药代动力学建模工作提供理论支持。首先对相应的控制方程进行非维度化,并根据文献报道的数值评估模型参数的大小顺序。在高 FcRn 结合亲和力的假设下,得出了在问题的特征阶段有效的分析近似值。此外,还得出了将清除率和 AUC 与生理模型参数联系起来的相对简单的方程,这些方程在问题的最长特征时间尺度上有效。对于低剂量到中等剂量,清除率实际上是线性的,而对于高剂量则是非线性的。研究表明,对于所有足够高的剂量,在最长的特征时间尺度上,血浆中 IgG 浓度的前导近似值与初始剂量无关。这是因为 FcRn "过量 "的 IgG 被消除的时间尺度远远短于终末阶段的时间尺度。总之,我们利用匹配渐近展开法推导出了基本 FcRn 机制的分析近似值,从而得出了一个将清除率与 FcRn 结合亲和力、降解与 FcRn 浓度之比以及系统体积相关联的简单方程。
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引用次数: 0
pyDarwin machine learning algorithms application and comparison in nonlinear mixed-effect model selection and optimization. pyDarwin 机器学习算法在非线性混合效应模型选择和优化中的应用和比较。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-06-28 DOI: 10.1007/s10928-024-09932-9
Xinnong Li, Mark Sale, Keith Nieforth, James Craig, Fenggong Wang, David Solit, Kairui Feng, Meng Hu, Robert Bies, Liang Zhao

Forward addition/backward elimination (FABE) has been the standard for population pharmacokinetic model selection (PPK) since NONMEM® was introduced. We investigated five machine learning (ML) algorithms (Genetic algorithm [GA], Gaussian process [GP], random forest [RF], gradient boosted random tree [GBRT], and particle swarm optimization [PSO]) as alternatives to FABE. These algorithms were applied to PPK model selection with a focus on comparing the efficiency and robustness of each of them. All machine learning algorithms included the combination of ML algorithms with a local downhill search. The local downhill search consisted of systematically changing one or two "features" at a time (a one-bit or a two-bit local search), alternating with the ML methods. An exhaustive search (all possible combinations of model features, N = 1,572,864 models) was the gold standard for robustness, and the number of models examined leading prior to identification of the final model was the metric for efficiency.All algorithms identified the optimal model when combined with the two-bit local downhill search. GA, RF, GBRT, and GP identified the optimal model with only a one-bit local search. PSO required the two-bit local downhill search. In our analysis, GP was the most efficient algorithm as measured by the number of models examined prior to finding the optimal (495 models), and PSO exhibited the least efficiency, requiring 1710 unique models before finding the best solution. Additionally, GP was also the algorithm that needed the longest elapsed time of 2975.6 min, in comparison with GA, which only required 321.8 min.

自 NONMEM® 推出以来,前向加法/后向除法(FABE)一直是群体药代动力学模型选择(PPK)的标准。我们研究了五种机器学习(ML)算法(遗传算法[GA]、高斯过程[GP]、随机森林[RF]、梯度提升随机树[GBRT]和粒子群优化[PSO])作为 FABE 的替代方法。这些算法被应用于 PPK 模型选择,重点是比较它们各自的效率和鲁棒性。所有机器学习算法都包括 ML 算法与局部下坡搜索的结合。局部下坡搜索包括每次系统地改变一个或两个 "特征"(一位或两位局部搜索),与 ML 方法交替进行。穷举搜索(所有可能的模型特征组合,N = 1,572,864 个模型)是衡量鲁棒性的黄金标准,而在确定最终模型之前所检查的模型数量则是衡量效率的指标。GA、RF、GBRT 和 GP 只用一位局部搜索就能确定最佳模型。PSO 则需要两位局部下坡搜索。在我们的分析中,从找到最优解之前所检查的模型数量(495 个模型)来看,GP 是效率最高的算法,而 PSO 的效率最低,在找到最优解之前需要 1710 个独特的模型。此外,GP 也是耗时最长的算法,需要 2975.6 分钟,而 GA 只需要 321.8 分钟。
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引用次数: 0
Comparison of monoclonal antibody disposition predictions using different physiologically based pharmacokinetic modelling platforms. 使用不同基于生理的药代动力学建模平台的单克隆抗体倾向预测的比较。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2023-11-12 DOI: 10.1007/s10928-023-09894-4
Pieter-Jan De Sutter, Elke Gasthuys, An Vermeulen

Physiologically based pharmacokinetic (PBPK) models can be used to leverage physiological and in vitro data to predict monoclonal antibody (mAb) concentrations in serum and tissues. However, it is currently not known how consistent predictions of mAb disposition are across PBPK modelling platforms. In this work PBPK simulations of IgG, adalimumab and infliximab were compared between three platforms (Simcyp, PK-Sim, and GastroPlus). Accuracy of predicted serum and tissue concentrations was assessed using observed data collected from the literature. Physiological and mAb related input parameters were also compared and sensitivity analyses were carried out to evaluate model behavior when input values were altered. Differences in serum kinetics of IgG between platforms were minimal for a dose of 1 mg/kg, but became more noticeable at higher dosages (> 100 mg/kg) and when reference (healthy) physiological input values were altered. Predicted serum concentrations of both adalimumab and infliximab were comparable across platforms, but were noticeably higher than observed values. Tissue concentrations differed remarkably between the platforms, both for total- and interstitial fluid (ISF) concentrations. The accuracy of total tissue concentrations was within a three-fold of observed values for all tissues, except for brain tissue concentrations, which were overpredicted. Predictions of tissue ISF concentrations were less accurate and were best captured by GastroPlus. Overall, these simulations show that the different PBPK platforms generally predict similar mAb serum concentrations, but variable tissue concentrations. Caution is therefore warranted when PBPK models are used to simulate effect site tissue concentrations of mAbs without data to verify the predictions.

基于生理的药代动力学(PBPK)模型可用于利用生理和体外数据来预测血清和组织中的单克隆抗体(mAb)浓度。然而,目前尚不清楚跨PBPK建模平台对单抗处置的预测是否一致。在这项工作中,比较了三个平台(Simcyp、PK-Sim和GastroPlus)对IgG、阿达木单抗和英夫利昔单抗的PBPK模拟。使用从文献中收集的观察数据评估预测血清和组织浓度的准确性。还比较了生理和mAb相关的输入参数,并进行了敏感性分析,以评估输入值改变时模型的行为。当剂量为1 mg/kg时,不同平台间IgG血清动力学的差异很小,但在更高剂量(100 mg/kg)和参考(健康)生理输入值改变时,差异变得更加明显。阿达木单抗和英夫利昔单抗的预测血清浓度在不同平台上具有可比性,但明显高于观察值。组织浓度在平台之间有显著差异,无论是总的和间质液(ISF)浓度。除脑组织浓度被高估外,所有组织的总组织浓度的准确性都在观察值的三倍之内。组织ISF浓度的预测不太准确,最好由GastroPlus捕获。总的来说,这些模拟表明,不同的PBPK平台通常预测相似的单抗血清浓度,但不同的组织浓度。因此,在没有数据验证预测的情况下,使用PBPK模型模拟单克隆抗体的影响部位组织浓度时,需要谨慎。
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Journal of Pharmacokinetics and Pharmacodynamics
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