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Expansion of platform physiologically-based pharmacokinetic model for monoclonal antibodies towards different preclinical species: cats, sheep, and dogs. 将单克隆抗体基于平台生理学的药代动力学模型扩展到不同的临床前物种:猫、羊和狗。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2023-11-10 DOI: 10.1007/s10928-023-09893-5
Hsien-Wei Huang, Shengjia Wu, Ekram A Chowdhury, Dhaval K Shah

Monoclonal antibodies (mAbs) are becoming an important therapeutic option in veterinary medicine, and understanding the pharmacokinetic (PK) of mAbs in higher-order animal species is also important for human drug development. To better understand the PK of mAbs in these animals, here we have expanded a platform physiological-based pharmacokinetic (PBPK) model to characterize the disposition of mAbs in three different preclinical species: cats, sheep, and dogs. We obtained PK data for mAbs and physiological parameters for the three different species from the literature. We were able to describe the PK of mAbs following intravenous (IV) or subcutaneous administration in cats, IV administration in sheep, and IV administration dogs reasonably well by fixing the physiological parameters and just estimating the parameters related to the binding of mAbs to the neonatal Fc receptor. The platform PBPK model presented here provides a quantitative tool to predict the plasma PK of mAbs in dogs, cats, and sheep. The model can also predict mAb PK in different tissues where the site of action might be located. As such, the mAb PBPK model presented here can facilitate the discovery, development, and preclinical-to-clinical translation of mAbs for veterinary and human medicine. The model can also be modified in the future to account for more detailed compartments for certain organs, different pathophysiology in the animals, and target-mediated drug disposition.

单克隆抗体(mAbs)正在成为兽医学中的一种重要治疗选择,了解mAbs在高级动物物种中的药代动力学(PK)对人类药物开发也很重要。为了更好地了解单克隆抗体在这些动物中的PK,我们扩展了一个基于平台生理学的药代动力学(PBPK)模型,以表征单克隆抗体在三种不同的临床前物种中的分布:猫、羊和狗。我们从文献中获得了单克隆抗体的PK数据和三种不同物种的生理参数。通过固定生理参数并仅估计与单克隆抗体与新生儿Fc受体结合相关的参数,我们能够很好地描述猫静脉(IV)或皮下给药、绵羊静脉给药和狗静脉给药后单克隆抗体的PK。本文提出的平台PBPK模型为预测狗、猫和羊的单克隆抗体血浆PK提供了一个定量工具。该模型还可以预测作用位点可能所在的不同组织中的mAb PK。因此,本文提出的mAb-PBPK模型可以促进用于兽医和人类医学的mAb的发现、开发和临床前到临床的转化。该模型也可以在未来进行修改,以解释某些器官的更详细的分区、动物的不同病理生理学以及靶向介导的药物处置。
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引用次数: 0
Virtual clinical trials via a QSP immuno-oncology model to simulate the response to a conditionally activated PD-L1 targeting antibody in NSCLC. 通过 QSP 免疫肿瘤学模型进行虚拟临床试验,模拟 NSCLC 对条件激活的 PD-L1 靶向抗体的反应。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-06-10 DOI: 10.1007/s10928-024-09928-5
Alberto Ippolito, Hanwen Wang, Yu Zhang, Vahideh Vakil, Aleksander S Popel

Recently, immunotherapies for antitumoral response have adopted conditionally activated molecules with the objective of reducing systemic toxicity. Amongst these are conditionally activated antibodies, such as PROBODY® activatable therapeutics (Pb-Tx), engineered to be proteolytically activated by proteases found locally in the tumor microenvironment (TME). These PROBODY® therapeutics molecules have shown potential as PD-L1 checkpoint inhibitors in several cancer types, including both effectiveness and locality of action of the molecule as shown by several clinical trials and imaging studies. Here, we perform an exploratory study using our recently published quantitative systems pharmacology model, previously validated for triple-negative breast cancer (TNBC), to computationally predict the effectiveness and targeting specificity of a PROBODY® therapeutics drug compared to the non-modified antibody. We begin with the analysis of anti-PD-L1 immunotherapy in non-small cell lung cancer (NSCLC). As a first contribution, we have improved previous virtual patient selection methods using the omics data provided by the iAtlas database portal compared to methods previously published in literature. Furthermore, our results suggest that masking an antibody maintains its efficacy while improving the localization of active therapeutic in the TME. Additionally, we generalize the model by evaluating the dependence of the response to the tumor mutational burden, independently of cancer type, as well as to other key biomarkers, such as CD8/Treg Tcell and M1/M2 macrophage ratio. While our results are obtained from simulations on NSCLC, our findings are generalizable to other cancer types and suggest that an effective and highly selective conditionally activated PROBODY® therapeutics molecule is a feasible option.

最近,抗肿瘤免疫疗法采用了条件激活分子,目的是减少全身毒性。其中包括条件激活抗体,如 PROBODY® 可激活疗法(Pb-Tx),这种抗体可被肿瘤微环境(TME)中的蛋白酶激活。这些 PROBODY® 疗法分子已在几种癌症类型中显示出作为 PD-L1 检查点抑制剂的潜力,包括几项临床试验和成像研究显示的分子的有效性和作用部位。在此,我们利用最近发表的定量系统药理学模型(该模型曾在三阴性乳腺癌 (TNBC) 中得到验证)进行了一项探索性研究,通过计算预测 PROBODY® 治疗药物与非修饰抗体相比的有效性和靶向特异性。我们首先分析了非小细胞肺癌(NSCLC)的抗 PD-L1 免疫疗法。作为第一个贡献,我们利用 iAtlas 数据库门户提供的 omics 数据改进了以前的虚拟患者选择方法,与以前发表在文献中的方法进行了比较。此外,我们的研究结果表明,掩蔽抗体可以保持其疗效,同时改善活性疗法在TME中的定位。此外,我们还通过评估反应对肿瘤突变负荷的依赖性(与癌症类型无关)以及对 CD8/Treg Tcell 和 M1/M2 巨噬细胞比率等其他关键生物标志物的依赖性,对模型进行了推广。虽然我们的结果是通过对 NSCLC 的模拟得出的,但我们的发现可以推广到其他癌症类型,并表明高效、高选择性的条件激活型 PROBODY® 治疗分子是一种可行的选择。
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引用次数: 0
An asymptotic description of a basic FcRn-regulated clearance mechanism and its implications for PBPK modelling of large antibodies. FcRn 调节的基本清除机制的渐近描述及其对大抗体 PBPK 建模的影响。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-06-24 DOI: 10.1007/s10928-024-09925-8
Csaba B Kátai, Shepard J Smithline, Craig J Thalhauser, Sieto Bosgra, Jeroen Elassaiss-Schaap

A basic FcRn-regulated clearance mechanism is investigated using the method of matched asymptotic expansions. The broader aim of the work is to obtain further insight on the mechanism, thereby providing theoretical support for future pharmacologically-based pharmacokinetic modelling efforts. The corresponding governing equations are first non-dimensionalised and the order of magnitudes of the model parameters are assessed based on their values reported in the literature. Under the assumption of high FcRn-binding affinity, analytical approximations are derived that are valid over the characteristic phases of the problem. Additionally, relatively simple equations relating clearance and AUC to physiological model parameters are derived, which are valid over the longest characteristic time scale of the problem. For lower to moderate doses clearance is effectively linear, whereas for higher doses it is nonlinear. It is shown that for all doses sufficiently high the leading-order approximation for the IgG concentration in plasma, over the longest characteristic time scale, is independent of the initial dose. This is because IgG that is in 'excess' of FcRn is eliminated over a time scale much shorter than that of the terminal phase. In conclusion, analytical approximations of the basic FcRn mechanism have been derived using matched asymptotic expansions, leading to a simple equation relating clearance to FcRn binding affinity, the ratio of degradation and FcRn concentration, and the volumes of the system.

利用匹配渐近展开法研究了基本的 FcRn 调节清除机制。这项工作的更广泛目标是进一步深入了解该机制,从而为未来基于药理学的药代动力学建模工作提供理论支持。首先对相应的控制方程进行非维度化,并根据文献报道的数值评估模型参数的大小顺序。在高 FcRn 结合亲和力的假设下,得出了在问题的特征阶段有效的分析近似值。此外,还得出了将清除率和 AUC 与生理模型参数联系起来的相对简单的方程,这些方程在问题的最长特征时间尺度上有效。对于低剂量到中等剂量,清除率实际上是线性的,而对于高剂量则是非线性的。研究表明,对于所有足够高的剂量,在最长的特征时间尺度上,血浆中 IgG 浓度的前导近似值与初始剂量无关。这是因为 FcRn "过量 "的 IgG 被消除的时间尺度远远短于终末阶段的时间尺度。总之,我们利用匹配渐近展开法推导出了基本 FcRn 机制的分析近似值,从而得出了一个将清除率与 FcRn 结合亲和力、降解与 FcRn 浓度之比以及系统体积相关联的简单方程。
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引用次数: 0
Time Scale Calculus: a new approach to multi-dose pharmacokinetic modeling. 时标计算:多剂量药代动力学建模的新方法。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-07-25 DOI: 10.1007/s10928-024-09920-z
José Ricardo Arteaga-Bejarano, Santiago Torres

In this paper, we use Time Scale Calculus (TSC) to formulate and solve pharmacokinetic models exploring multiple dose dynamics. TSC is a mathematical framework that allows the modeling of dynamical systems comprising continuous and discrete processes. This characteristic makes TSC particularly suited for multi-dose pharmacokinetic problems, which inherently feature a blend of continuous processes (such as absorption, metabolization, and elimination) and discrete events (drug intake). We use this toolkit to derive analytical expressions for blood concentration trajectories under various multi-dose regimens across several flagship pharmacokinetic models. We demonstrate that this mathematical framework furnishes an alternative and simplified way to model and retrieve analytical solutions for multi-dose dynamics. For instance, it enables the study of blood concentration responses to arbitrary dose regimens and facilitates the characterization of the long-term behavior of the solutions, such as their steady state.

在本文中,我们使用时间尺度微积分(TSC)来建立和求解探索多剂量动态的药代动力学模型。时间尺度微积分是一种数学框架,可对由连续和离散过程组成的动态系统进行建模。这一特点使得 TSC 特别适合多剂量药代动力学问题,因为这些问题本身就具有连续过程(如吸收、代谢和消除)和离散事件(药物摄入)的混合特征。我们利用这一工具包推导出了几种旗舰药代动力学模型中各种多剂量方案下的血药浓度轨迹分析表达式。我们证明,这一数学框架为多剂量动力学建模和检索分析解决方案提供了另一种简化方法。例如,它可以研究任意剂量方案下的血药浓度反应,并有助于描述解的长期行为,如稳态。
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引用次数: 0
A quantitative modeling framework to understand the physiology of the hypothalamic-pituitary-adrenal axis and interaction with cortisol replacement therapy. 了解下丘脑-垂体-肾上腺轴生理学以及与皮质醇替代疗法相互作用的定量模型框架。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-07-08 DOI: 10.1007/s10928-024-09934-7
Davide Bindellini, Robin Michelet, Linda B S Aulin, Johanna Melin, Uta Neumann, Oliver Blankenstein, Wilhelm Huisinga, Martin J Whitaker, Richard Ross, Charlotte Kloft

Congenital adrenal hyperplasia (CAH) is characterized by impaired adrenal cortisol production. Hydrocortisone (synthetic cortisol) is the drug-of-choice for cortisol replacement therapy, aiming to mimic physiological cortisol circadian rhythm. The hypothalamic-pituitary-adrenal (HPA) axis controls cortisol production through the pituitary adrenocorticotropic hormone (ACTH) and feedback mechanisms. The aim of this study was to quantify key mechanisms involved in the HPA axis activity regulation and their interaction with hydrocortisone therapy. Data from 30 healthy volunteers was leveraged: Endogenous ACTH and cortisol concentrations without any intervention as well as cortisol concentrations measured after dexamethasone suppression and single dose administration of (i) 0.5-10 mg hydrocortisone as granules, (ii) 20 mg hydrocortisone as granules and intravenous bolus. A stepwise model development workflow was used: A newly developed model for endogenous ACTH and cortisol was merged with a refined hydrocortisone pharmacokinetic model. The joint model was used to simulate ACTH and cortisol trajectories in CAH patients with varying degrees of enzyme deficiency, with or without hydrocortisone administration, and healthy individuals. Time-dependent ACTH-driven endogenous cortisol production and cortisol-mediated feedback inhibition of ACTH secretion processes were quantified and implemented in the model. Comparison of simulated ACTH and cortisol trajectories between CAH patients and healthy individuals showed the importance of administering hydrocortisone before morning ACTH secretion peak time to suppress ACTH overproduction observed in untreated CAH patients. The developed framework allowed to gain insights on the physiological mechanisms of the HPA axis regulation, its perturbations in CAH and interaction with hydrocortisone administration, paving the way towards cortisol replacement therapy optimization.

先天性肾上腺皮质增生症(CAH)的特点是肾上腺皮质醇分泌受损。氢化可的松(合成皮质醇)是皮质醇替代疗法的首选药物,旨在模拟皮质醇的昼夜生理节律。下丘脑-垂体-肾上腺(HPA)轴通过垂体促肾上腺皮质激素(ACTH)和反馈机制控制皮质醇的分泌。本研究旨在量化参与 HPA 轴活动调节的关键机制及其与氢化可的松疗法的相互作用。研究利用了 30 名健康志愿者的数据:内源性促肾上腺皮质激素(ACTH)和皮质醇浓度在没有任何干预的情况下,以及在地塞米松抑制和单剂量给药(i)0.5-10 毫克氢化可的松颗粒、(ii)20 毫克氢化可的松颗粒和静脉注射后测量的皮质醇浓度。采用逐步模型开发工作流程:新开发的内源性促肾上腺皮质激素和皮质醇模型与改进的氢化可的松药代动力学模型合并。联合模型用于模拟不同程度酶缺乏的 CAH 患者(无论是否服用氢化可的松)和健康人的促肾上腺皮质激素和皮质醇轨迹。该模型量化并实现了随时间变化的促肾上腺皮质激素驱动的内源性皮质醇分泌和皮质醇介导的促肾上腺皮质激素分泌反馈抑制过程。通过比较 CAH 患者和健康人的模拟促肾上腺皮质激素和皮质醇轨迹,可以发现在早晨促肾上腺皮质激素分泌高峰时间之前使用氢化可的松抑制未经治疗的 CAH 患者促肾上腺皮质激素过度分泌的重要性。所开发的框架有助于深入了解 HPA 轴调节的生理机制、其在 CAH 中的扰动以及与氢化可的松用药的相互作用,从而为优化皮质醇替代疗法铺平道路。
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引用次数: 0
pyDarwin machine learning algorithms application and comparison in nonlinear mixed-effect model selection and optimization. pyDarwin 机器学习算法在非线性混合效应模型选择和优化中的应用和比较。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-06-28 DOI: 10.1007/s10928-024-09932-9
Xinnong Li, Mark Sale, Keith Nieforth, James Craig, Fenggong Wang, David Solit, Kairui Feng, Meng Hu, Robert Bies, Liang Zhao

Forward addition/backward elimination (FABE) has been the standard for population pharmacokinetic model selection (PPK) since NONMEM® was introduced. We investigated five machine learning (ML) algorithms (Genetic algorithm [GA], Gaussian process [GP], random forest [RF], gradient boosted random tree [GBRT], and particle swarm optimization [PSO]) as alternatives to FABE. These algorithms were applied to PPK model selection with a focus on comparing the efficiency and robustness of each of them. All machine learning algorithms included the combination of ML algorithms with a local downhill search. The local downhill search consisted of systematically changing one or two "features" at a time (a one-bit or a two-bit local search), alternating with the ML methods. An exhaustive search (all possible combinations of model features, N = 1,572,864 models) was the gold standard for robustness, and the number of models examined leading prior to identification of the final model was the metric for efficiency.All algorithms identified the optimal model when combined with the two-bit local downhill search. GA, RF, GBRT, and GP identified the optimal model with only a one-bit local search. PSO required the two-bit local downhill search. In our analysis, GP was the most efficient algorithm as measured by the number of models examined prior to finding the optimal (495 models), and PSO exhibited the least efficiency, requiring 1710 unique models before finding the best solution. Additionally, GP was also the algorithm that needed the longest elapsed time of 2975.6 min, in comparison with GA, which only required 321.8 min.

自 NONMEM® 推出以来,前向加法/后向除法(FABE)一直是群体药代动力学模型选择(PPK)的标准。我们研究了五种机器学习(ML)算法(遗传算法[GA]、高斯过程[GP]、随机森林[RF]、梯度提升随机树[GBRT]和粒子群优化[PSO])作为 FABE 的替代方法。这些算法被应用于 PPK 模型选择,重点是比较它们各自的效率和鲁棒性。所有机器学习算法都包括 ML 算法与局部下坡搜索的结合。局部下坡搜索包括每次系统地改变一个或两个 "特征"(一位或两位局部搜索),与 ML 方法交替进行。穷举搜索(所有可能的模型特征组合,N = 1,572,864 个模型)是衡量鲁棒性的黄金标准,而在确定最终模型之前所检查的模型数量则是衡量效率的指标。GA、RF、GBRT 和 GP 只用一位局部搜索就能确定最佳模型。PSO 则需要两位局部下坡搜索。在我们的分析中,从找到最优解之前所检查的模型数量(495 个模型)来看,GP 是效率最高的算法,而 PSO 的效率最低,在找到最优解之前需要 1710 个独特的模型。此外,GP 也是耗时最长的算法,需要 2975.6 分钟,而 GA 只需要 321.8 分钟。
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引用次数: 0
Comparison of monoclonal antibody disposition predictions using different physiologically based pharmacokinetic modelling platforms. 使用不同基于生理的药代动力学建模平台的单克隆抗体倾向预测的比较。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2023-11-12 DOI: 10.1007/s10928-023-09894-4
Pieter-Jan De Sutter, Elke Gasthuys, An Vermeulen

Physiologically based pharmacokinetic (PBPK) models can be used to leverage physiological and in vitro data to predict monoclonal antibody (mAb) concentrations in serum and tissues. However, it is currently not known how consistent predictions of mAb disposition are across PBPK modelling platforms. In this work PBPK simulations of IgG, adalimumab and infliximab were compared between three platforms (Simcyp, PK-Sim, and GastroPlus). Accuracy of predicted serum and tissue concentrations was assessed using observed data collected from the literature. Physiological and mAb related input parameters were also compared and sensitivity analyses were carried out to evaluate model behavior when input values were altered. Differences in serum kinetics of IgG between platforms were minimal for a dose of 1 mg/kg, but became more noticeable at higher dosages (> 100 mg/kg) and when reference (healthy) physiological input values were altered. Predicted serum concentrations of both adalimumab and infliximab were comparable across platforms, but were noticeably higher than observed values. Tissue concentrations differed remarkably between the platforms, both for total- and interstitial fluid (ISF) concentrations. The accuracy of total tissue concentrations was within a three-fold of observed values for all tissues, except for brain tissue concentrations, which were overpredicted. Predictions of tissue ISF concentrations were less accurate and were best captured by GastroPlus. Overall, these simulations show that the different PBPK platforms generally predict similar mAb serum concentrations, but variable tissue concentrations. Caution is therefore warranted when PBPK models are used to simulate effect site tissue concentrations of mAbs without data to verify the predictions.

基于生理的药代动力学(PBPK)模型可用于利用生理和体外数据来预测血清和组织中的单克隆抗体(mAb)浓度。然而,目前尚不清楚跨PBPK建模平台对单抗处置的预测是否一致。在这项工作中,比较了三个平台(Simcyp、PK-Sim和GastroPlus)对IgG、阿达木单抗和英夫利昔单抗的PBPK模拟。使用从文献中收集的观察数据评估预测血清和组织浓度的准确性。还比较了生理和mAb相关的输入参数,并进行了敏感性分析,以评估输入值改变时模型的行为。当剂量为1 mg/kg时,不同平台间IgG血清动力学的差异很小,但在更高剂量(100 mg/kg)和参考(健康)生理输入值改变时,差异变得更加明显。阿达木单抗和英夫利昔单抗的预测血清浓度在不同平台上具有可比性,但明显高于观察值。组织浓度在平台之间有显著差异,无论是总的和间质液(ISF)浓度。除脑组织浓度被高估外,所有组织的总组织浓度的准确性都在观察值的三倍之内。组织ISF浓度的预测不太准确,最好由GastroPlus捕获。总的来说,这些模拟表明,不同的PBPK平台通常预测相似的单抗血清浓度,但不同的组织浓度。因此,在没有数据验证预测的情况下,使用PBPK模型模拟单克隆抗体的影响部位组织浓度时,需要谨慎。
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引用次数: 0
General quasi-equilibrium multivalent binding model to study diverse and complex drug-receptor interactions of biologics. 通用准平衡多价结合模型,用于研究生物制剂的各种复杂的药物-受体相互作用。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-08-17 DOI: 10.1007/s10928-024-09936-5
Chee M Ng, Robert J Bauer

Pharmacokinetics and pharmacodynamics of many biologics are influenced by their complex binding to biological receptors. Biologics consist of diverse groups of molecules with different binding kinetics to its receptors including IgG with simple one-to-one drug receptor bindings, bispecific antibody (BsAb) that binds to two different receptors, and antibodies that can bind to six or more identical receptors. As the binding process is typically much faster than elimination (or internalization) and distribution processes, quasi-equilibrium (QE) binding models are commonly used to describe drug-receptor binding kinetics of biologics. However, no general QE modeling framework is available to describe complex binding kinetics for diverse classes of biologics. In this paper, we describe novel approaches of using differential algebraic equations (DAE) to solve three QE multivalent drug-receptor binding (QEMB) models. The first example describes the binding kinetics of three-body equilibria of BsAb that binds to 2 different receptors for trimer formation. The second example models an engineered IgG variant (Multabody) that can bind to 24 identical target receptors. The third example describes an IgG with modified neonatal Fc receptor (FcRn) binding affinity that competes for the same FcRn receptor as endogenous IgG. The model parameter estimates were obtained by fitting the model to all data simultaneously. The models allowed us to study potential roles of cooperative binding on bell-shaped drug exposure-response relationships of BsAb, and concentration-depended distribution of different drug-receptor complexes for Multabody. This DAE-based QEMB model platform can serve as an important tool to better understand complex binding kinetics of diverse classes of biologics.

许多生物制剂的药代动力学和药效学受其与生物受体复杂结合的影响。生物制剂由不同的分子组组成,这些分子组与受体的结合动力学各不相同,其中包括与药物受体一对一结合的 IgG、与两种不同受体结合的双特异性抗体(BsAb)以及可与六种或六种以上相同受体结合的抗体。由于结合过程通常比消除(或内化)和分布过程快得多,因此准平衡(QE)结合模型常用于描述生物制剂的药物受体结合动力学。然而,目前还没有通用的 QE 模型框架来描述不同类别生物制剂的复杂结合动力学。在本文中,我们介绍了使用微分代数方程(DAE)求解三种 QE 多价药物受体结合(QEMB)模型的新方法。第一个例子描述了与 2 种不同受体结合形成三聚体的 BsAb 的三体平衡结合动力学。第二个例子模拟了可与 24 个相同目标受体结合的工程化 IgG 变异体(多体)。第三个例子描述了一种具有改良新生 Fc 受体(FcRn)结合亲和力的 IgG,它与内源性 IgG 竞争相同的 FcRn 受体。模型参数估计是通过同时拟合所有数据得到的。通过这些模型,我们可以研究合作结合对 BsAb 的钟形药物暴露-反应关系的潜在作用,以及 Multabody 不同药物-受体复合物的浓度依赖性分布。这种基于 DAE 的 QEMB 模型平台可作为一种重要工具,用于更好地理解不同类别生物制剂的复杂结合动力学。
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引用次数: 0
Generation of realistic virtual adult populations using a model-based copula approach. 利用基于模型的共轭方法生成逼真的虚拟成人种群。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-06-06 DOI: 10.1007/s10928-024-09929-4
Yuchen Guo, Tingjie Guo, Catherijne A J Knibbe, Laura B Zwep, J G Coen van Hasselt

Incorporating realistic sets of patient-associated covariates, i.e., virtual populations, in pharmacometric simulation workflows is essential to obtain realistic model predictions. Current covariate simulation strategies often omit or simplify dependency structures between covariates. Copula models are multivariate distribution functions suitable to capture dependency structures between covariates with improved performance compared to standard approaches. We aimed to develop and evaluate a copula model for generation of adult virtual populations for 12 patient-associated covariates commonly used in pharmacometric simulations, using the publicly available NHANES database, including sex, race-ethnicity, body weight, albumin, and several biochemical variables related to organ function. A multivariate (vine) copula was constructed from bivariate relationships in a stepwise fashion. Covariate distributions were well captured for the overall and subgroup populations. Based on the developed copula model, a web application was developed. The developed copula model and associated web application can be used to generate realistic adult virtual populations, ultimately to support model-based clinical trial design or dose optimization strategies.

在药物计量学模拟工作流程中纳入现实的患者相关协变量集,即虚拟人群,对于获得逼真的模型预测至关重要。目前的协变量模拟策略通常会忽略或简化协变量之间的依赖结构。Copula 模型是一种多变量分布函数,适用于捕捉协变量之间的依赖结构,与标准方法相比性能更高。我们的目的是利用公开的 NHANES 数据库,包括性别、种族、体重、白蛋白和几个与器官功能相关的生化变量,开发并评估一个 copula 模型,用于生成药效学模拟中常用的 12 个患者相关协变量的成人虚拟人群。根据双变量关系逐步构建了多变量(藤蔓)协方差。总体和亚组人群的相关变量分布得到了很好的捕捉。根据所建立的协方差模型,开发了一个网络应用程序。所开发的 copula 模型和相关的网络应用程序可用于生成真实的成人虚拟人群,最终支持基于模型的临床试验设计或剂量优化策略。
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引用次数: 0
A quantitative systems pharmacology model of plasma kallikrein-kinin system dysregulation in hereditary angioedema. 遗传性血管性水肿中血浆激肽-激肽系统失调的定量系统药理学模型。
IF 2.2 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-12-01 Epub Date: 2024-05-11 DOI: 10.1007/s10928-024-09919-6
Dan Sexton, Hoa Q Nguyen, Salomé Juethner, Haobin Luo, Zhiwei Zhang, Paul Jasper, Andy Z X Zhu

Hereditary angioedema (HAE) due to C1-inhibitor deficiency is a rare, debilitating, genetic disorder characterized by recurrent, unpredictable, attacks of edema. The clinical symptoms of HAE arise from excess bradykinin generation due to dysregulation of the plasma kallikrein-kinin system (KKS). A quantitative systems pharmacology (QSP) model that mechanistically describes the KKS and its role in HAE pathophysiology was developed based on HAE attacks being triggered by autoactivation of factor XII (FXII) to activated FXII (FXIIa), resulting in kallikrein production from prekallikrein. A base pharmacodynamic model was constructed and parameterized from literature data and ex vivo assays measuring inhibition of kallikrein activity in plasma of HAE patients or healthy volunteers who received lanadelumab. HAE attacks were simulated using a virtual patient population, with attacks recorded when systemic bradykinin levels exceeded 20 pM. The model was validated by comparing the simulations to observations from lanadelumab and plasma-derived C1-inhibitor clinical trials. The model was then applied to analyze the impact of nonadherence to a daily oral preventive therapy; simulations showed a correlation between the number of missed doses per month and reduced drug effectiveness. The impact of reducing lanadelumab dosing frequency from 300 mg every 2 weeks (Q2W) to every 4 weeks (Q4W) was also examined and showed that while attack rates with Q4W dosing were substantially reduced, the extent of reduction was greater with Q2W dosing. Overall, the QSP model showed good agreement with clinical data and could be used for hypothesis testing and outcome predictions.

因 C1 抑制剂缺乏而导致的遗传性血管性水肿(HAE)是一种罕见的、使人衰弱的遗传性疾病,其特征是反复发作、难以预测的水肿。HAE 的临床症状源于血浆降钙素-激肽系统(KKS)失调导致的缓激肽生成过多。根据因子 XII (FXII) 自激活到激活的 FXII (FXIIa),导致前allikrein 产生allikrein,从而引发 HAE 发作的原理,我们开发了一个定量系统药理学 (QSP) 模型,从机理上描述了 KKS 及其在 HAE 病理生理学中的作用。根据文献数据和测量HAE患者或接受拉那珠单抗治疗的健康志愿者血浆中凯利克瑞林活性抑制作用的体内外试验,我们构建了一个基础药效学模型并对其进行了参数化。使用虚拟患者群体模拟 HAE 发作,当全身缓激肽水平超过 20 pM 时记录发作情况。通过将模拟结果与拉那珠单抗和血浆衍生 C1 抑制剂临床试验的观察结果进行比较,对模型进行了验证。随后,该模型被用于分析不坚持每日口服预防性疗法的影响;模拟结果显示,每月漏服次数与药效降低之间存在相关性。此外,还研究了将拉那珠单抗的给药频率从每两周(Q2W)300 毫克降低到每四周(Q4W)300 毫克的影响,结果表明,虽然 Q4W 给药可大幅降低发病率,但 Q2W 给药的降低幅度更大。总之,QSP 模型与临床数据显示出良好的一致性,可用于假设检验和结果预测。
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引用次数: 0
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Journal of Pharmacokinetics and Pharmacodynamics
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