Vinod Joshi, B. Shareef, B. Angel, Annette Angel, Ramesh Joshi, A. Khan, Poorna Khaneja, N. Peer, Bhawna Sharma, Neha Singh, Satinder Pal Singh, Shilpa Barthwal, Komal Tomar, Kiran Yadav
In India and other affected countries, Omicron variant of SARS-CoV-2 has shown faster transmission but less clinical severities when compared to Delta strain. Present study was aimed to investigate how molecular changes in the spike proteins of Omicron variant has increased its transmission but reduced the disease severity. We report molecular interactions of Spike proteins of Delta and Omicron variants with ACE-2 receptor to explain how change in chemical and physical nature of mutated amino acids of Omicron variant has affected the internalization competence of virus into host cell. The Research Collaboratory Structural Bioinformatics (RCSB) and Protein Data Bank (PDB) were used to construct ACE2-Spike Protein interaction. The binding affinity of both omicron and delta variant spike proteins with human ACE2 receptor was observed. Spike protein of Omicron variants has revealed total number of 93 dissimilarities of amino acids from Delta strain,15 of which are in its Receptor Binding Domain (RBD). Our study showed that RBD of Delta variant contained only one hydrophobic amino acid whereas there were 6 hydrophobic amino acids in the RBD of Omicron variant. We report that increased number of Hydrophobic Amino Acids in RBD of Omicron variant affects its binding with ACE2 receptor to enter into the cell. The failure of internalization of virus has increased concentration of extracellular virions at nasopharyngeal region leading to faster expulsion of infective droplets during coughing or sneezing to increase transmission but has reduced the severity of infection. The reported observations could prove to be of public health and therapeutic significance.
{"title":"Molecular Basis of Host-Virus Interactions to Explain Relative Transmission and Severity Caused by Omicron and Delta variants of SARS-CoV-2","authors":"Vinod Joshi, B. Shareef, B. Angel, Annette Angel, Ramesh Joshi, A. Khan, Poorna Khaneja, N. Peer, Bhawna Sharma, Neha Singh, Satinder Pal Singh, Shilpa Barthwal, Komal Tomar, Kiran Yadav","doi":"10.22207/jpam.17.3.22","DOIUrl":"https://doi.org/10.22207/jpam.17.3.22","url":null,"abstract":"In India and other affected countries, Omicron variant of SARS-CoV-2 has shown faster transmission but less clinical severities when compared to Delta strain. Present study was aimed to investigate how molecular changes in the spike proteins of Omicron variant has increased its transmission but reduced the disease severity. We report molecular interactions of Spike proteins of Delta and Omicron variants with ACE-2 receptor to explain how change in chemical and physical nature of mutated amino acids of Omicron variant has affected the internalization competence of virus into host cell. The Research Collaboratory Structural Bioinformatics (RCSB) and Protein Data Bank (PDB) were used to construct ACE2-Spike Protein interaction. The binding affinity of both omicron and delta variant spike proteins with human ACE2 receptor was observed. Spike protein of Omicron variants has revealed total number of 93 dissimilarities of amino acids from Delta strain,15 of which are in its Receptor Binding Domain (RBD). Our study showed that RBD of Delta variant contained only one hydrophobic amino acid whereas there were 6 hydrophobic amino acids in the RBD of Omicron variant. We report that increased number of Hydrophobic Amino Acids in RBD of Omicron variant affects its binding with ACE2 receptor to enter into the cell. The failure of internalization of virus has increased concentration of extracellular virions at nasopharyngeal region leading to faster expulsion of infective droplets during coughing or sneezing to increase transmission but has reduced the severity of infection. The reported observations could prove to be of public health and therapeutic significance.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":" ","pages":""},"PeriodicalIF":0.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44163837","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mardhia Mardhia, Andi Yasmon, J. Indarti, Lisnawati Rachmadi
Human papillomavirus (HPV) can be transmitted sexually and causes cervical malignancies in women. Among the risk factors, sexually transmitted infections (STIs) caused by bacteria have raised concerns because they are asymptomatic and persistent and can increase the risk of HPV infection. This study assessed the correlation among Ureaplasma urealyticum, Ureaplasma parvum, Chlamydia trachomatis, and Mycoplasma hominis infections towards abnormal cervical cells positive for HPV. Seventy outpatients at the Colposcopy Outpatient Clinic, Dr. Cipto Mangunkusumo Hospital in Jakarta, Indonesia, were enrolled in this cross-sectional study. Viruses and bacteria were detected using polymerase chain reaction and compared with liquid-based cytology results for cervical cytology. Of the 70 patients, 24 (34.28%) showed abnormal cervical cytology. Among those with abnormal cervical cytology, C.trachomatis was reported in 1 patient (4.2%), M.hominis in 6 patients (25%), U.urealyticum in 13 patients (54.2%), and U.parvum in 10 patients (41.7%). Statistical analysis demonstrated an association between U.urealyticum and U.parvum infections and HPV infection (U.urealyticum p = 0.012; U.parvum p = 0.022). U.urealyticum and U.parvum were more prevalent than C.trachomatis and M.hominis in HPV-positive women, suggesting their role in HPV infection.
{"title":"Role of Ureaplasma urealyticum and Ureaplasma parvum as Risk Factors for Cervical Dysplasia with Human Papillomavirus","authors":"Mardhia Mardhia, Andi Yasmon, J. Indarti, Lisnawati Rachmadi","doi":"10.22207/jpam.17.3.33","DOIUrl":"https://doi.org/10.22207/jpam.17.3.33","url":null,"abstract":"Human papillomavirus (HPV) can be transmitted sexually and causes cervical malignancies in women. Among the risk factors, sexually transmitted infections (STIs) caused by bacteria have raised concerns because they are asymptomatic and persistent and can increase the risk of HPV infection. This study assessed the correlation among Ureaplasma urealyticum, Ureaplasma parvum, Chlamydia trachomatis, and Mycoplasma hominis infections towards abnormal cervical cells positive for HPV. Seventy outpatients at the Colposcopy Outpatient Clinic, Dr. Cipto Mangunkusumo Hospital in Jakarta, Indonesia, were enrolled in this cross-sectional study. Viruses and bacteria were detected using polymerase chain reaction and compared with liquid-based cytology results for cervical cytology. Of the 70 patients, 24 (34.28%) showed abnormal cervical cytology. Among those with abnormal cervical cytology, C.trachomatis was reported in 1 patient (4.2%), M.hominis in 6 patients (25%), U.urealyticum in 13 patients (54.2%), and U.parvum in 10 patients (41.7%). Statistical analysis demonstrated an association between U.urealyticum and U.parvum infections and HPV infection (U.urealyticum p = 0.012; U.parvum p = 0.022). U.urealyticum and U.parvum were more prevalent than C.trachomatis and M.hominis in HPV-positive women, suggesting their role in HPV infection.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":" ","pages":""},"PeriodicalIF":0.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45953650","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Azadirachta indica Juss (Neem) is well documented for its antimicrobial activity. The effect of varying concentrations (0.1 to 50% v/v) of Azadirachta indica derived neem seed oil (NSO), neem seed oil with tween 20 and neem bark extract was evaluated on planktonic, biofilm formation and mature biofilms of multiple drug resistant Pseudomonas aeruginosa ATCC 15442 and Staphylococcus aureus ATCC 25923 using the crystal violet assay and scanning electron microscopy. NSO showed antimicrobial activity at 25% v/v for P. aeruginosa but not S. aureus in zone of inhibition assay. Neem bark extract on the contrary showed antimicrobial activity against both the isolates at 50% v/v concentrations. Interestingly, in biofilm formation assay, low concentrations of NSO (3.5 to 0.2% v/v) induced biofilm formation while inhibition of both planktonic and biofilm was seen in concentration dependent manner from 12.5% v/v onwards. Complex of NSO and tween in comparison of NSO alone caused low induction in S.aureus biofilm formation, while inhibiting biofilm formation of P. aeruginosa at all the concentrations. In biofilm eradication assay, NSO induced biofilm of both P. aeruginosa (50 to 0.1%v/v) and S. aureus (50 to 3.13%v/v). Eradication effect of neem bark extract was found on P. aeruginosa biofilm in a dose dependent fashion from 50 to 20% v/v followed by 0.2 to 0.1%v/v concentration respectively. S. aureus biofilm were eradicated at 50 to 25%v/v concentrations. At low concentrations, both the neem derivatives induced biofilm mediated growth of the pathogenic organisms. The data also indicate that neem seed oil was more effective against Gram negative P. aeruginosa while neem bark extract was effective against Gram positive S. aureus. This study highlights the crucial but variable effects of concentration dependent effect of phytochemicals and their composition on biofilm induction as well as eradication, the primary growth form in clinical settings. This challenges the notion that all herbal products are safe as antimicrobial activities differ as per microbial growth modes. Hence, concentration dependent effect of medicinal plant derived products requires thorough investigation prior to their use as antimicrobial agents.
{"title":"Concentration Dependent Effect of Azadirachta indica (Neem) Seed Oil and Neem Bark extract on Planktonic and Established Biofilm Growth of Pseudomonas aeruginosa and Staphylococcus aureus","authors":"R. Katiyar, Ekta Khare, S. Kaistha","doi":"10.22207/jpam.17.3.30","DOIUrl":"https://doi.org/10.22207/jpam.17.3.30","url":null,"abstract":"Azadirachta indica Juss (Neem) is well documented for its antimicrobial activity. The effect of varying concentrations (0.1 to 50% v/v) of Azadirachta indica derived neem seed oil (NSO), neem seed oil with tween 20 and neem bark extract was evaluated on planktonic, biofilm formation and mature biofilms of multiple drug resistant Pseudomonas aeruginosa ATCC 15442 and Staphylococcus aureus ATCC 25923 using the crystal violet assay and scanning electron microscopy. NSO showed antimicrobial activity at 25% v/v for P. aeruginosa but not S. aureus in zone of inhibition assay. Neem bark extract on the contrary showed antimicrobial activity against both the isolates at 50% v/v concentrations. Interestingly, in biofilm formation assay, low concentrations of NSO (3.5 to 0.2% v/v) induced biofilm formation while inhibition of both planktonic and biofilm was seen in concentration dependent manner from 12.5% v/v onwards. Complex of NSO and tween in comparison of NSO alone caused low induction in S.aureus biofilm formation, while inhibiting biofilm formation of P. aeruginosa at all the concentrations. In biofilm eradication assay, NSO induced biofilm of both P. aeruginosa (50 to 0.1%v/v) and S. aureus (50 to 3.13%v/v). Eradication effect of neem bark extract was found on P. aeruginosa biofilm in a dose dependent fashion from 50 to 20% v/v followed by 0.2 to 0.1%v/v concentration respectively. S. aureus biofilm were eradicated at 50 to 25%v/v concentrations. At low concentrations, both the neem derivatives induced biofilm mediated growth of the pathogenic organisms. The data also indicate that neem seed oil was more effective against Gram negative P. aeruginosa while neem bark extract was effective against Gram positive S. aureus. This study highlights the crucial but variable effects of concentration dependent effect of phytochemicals and their composition on biofilm induction as well as eradication, the primary growth form in clinical settings. This challenges the notion that all herbal products are safe as antimicrobial activities differ as per microbial growth modes. Hence, concentration dependent effect of medicinal plant derived products requires thorough investigation prior to their use as antimicrobial agents.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":" ","pages":""},"PeriodicalIF":0.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46707592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Payel Das, Dipankar Mahapatra, Sahana Sen Mazumder
Antimicrobial Resistance (AMR) has been regarded as a major public health concern as a reason of millions of deaths. Extended-spectrum β-lactamase (ESBL) is considered as a leading factor contributing to this and limiting its treatment. Thus, ESBL producing Enterobacteriaceae should be discriminated from those having other mechanism conferring resistance. Several phenotypic methods have been evaluated for this purpose. Some of these are based on conventional method (DDST, CDT, ESBL E-test, Cica-β test) while others depend on automated systems (VITEK 1, VITEK 2, Phoenix, MicroScan). All the conventional methods have been found to be more specific, sensitive and cost effective than any of the automated system though they are easy to perform and interpret. Automated system also fails to detect ESBL in presence of other interfering enzymes such as AmpC, MBL or K1 enzyme. ESBL can be detected by using third-generation cephalosporin (cefotaxime or ceftazidime) or monobactam (aztreonam) in combination with clavulanate. AmpC can be distinguished by using cloxacillin-containing agar, fourth-generation cephalosporin (cefepime) or phenylboronic acid. MBL producers remain unaffected in presence of clavulanate but gets inhibited by carbapenems (imipenem, meropenem) in combination with EDTA. Cefpodoxime-clavulanate and ceftazidime- clavulanate combinations are reliable for K1 enzyme detection but are not suitable for distinguishing blaCTX–M1.
{"title":"A Guide Towards the Phenotypic Detection of Extended-spectrum β-lactamases Production in Enterobacteriaceae: Alone or in Presence of Other Interfering Enzymes","authors":"Payel Das, Dipankar Mahapatra, Sahana Sen Mazumder","doi":"10.22207/jpam.17.3.31","DOIUrl":"https://doi.org/10.22207/jpam.17.3.31","url":null,"abstract":"Antimicrobial Resistance (AMR) has been regarded as a major public health concern as a reason of millions of deaths. Extended-spectrum β-lactamase (ESBL) is considered as a leading factor contributing to this and limiting its treatment. Thus, ESBL producing Enterobacteriaceae should be discriminated from those having other mechanism conferring resistance. Several phenotypic methods have been evaluated for this purpose. Some of these are based on conventional method (DDST, CDT, ESBL E-test, Cica-β test) while others depend on automated systems (VITEK 1, VITEK 2, Phoenix, MicroScan). All the conventional methods have been found to be more specific, sensitive and cost effective than any of the automated system though they are easy to perform and interpret. Automated system also fails to detect ESBL in presence of other interfering enzymes such as AmpC, MBL or K1 enzyme. ESBL can be detected by using third-generation cephalosporin (cefotaxime or ceftazidime) or monobactam (aztreonam) in combination with clavulanate. AmpC can be distinguished by using cloxacillin-containing agar, fourth-generation cephalosporin (cefepime) or phenylboronic acid. MBL producers remain unaffected in presence of clavulanate but gets inhibited by carbapenems (imipenem, meropenem) in combination with EDTA. Cefpodoxime-clavulanate and ceftazidime- clavulanate combinations are reliable for K1 enzyme detection but are not suitable for distinguishing blaCTX–M1.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":" ","pages":""},"PeriodicalIF":0.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45183117","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The present study was carried out between 2016 and 2020 in Makour Hamou Public Hospital, Ain Defla district, North Centre of Algeria. The study aimed to characterise the antimicrobial resistance and multidrug resistance in bacteria isolated from 620 patients with purulent skin wounds. Out of the 428 bacterial isolates, 283 were Gram-positive (66.12 ± 4.48%) (P<0.001). A total number of 77 Staphylococcus aureus isolates were obtained, among them 31.2 ± 9.3% (24/77) were methicillin-resistant. The most frequent Gram-negative bacteria were Escherichia coli (30.34±7.4%), followed by Klebsiella pneumoniae (25.52±7.10%), and Pseudomonas aeruginosa (23.45±6.70%). All Staphylococcus aureus isolates (77/77) were sensitive to clindamycin. Escherichia coli isolates were resistant to several antibiotics with high resistance rates to amoxicillin (38/44; 86.4 ± 10.1%), amoxicillin-clavulanate (30/44; 68.2 ± 13.8%), cefazolin (21/44; 47.7 ± 7.5%) and trimethoprim-sulfamethoxazole (16/44; 36.4 ± 14.2%) (P<0.001). All Gram-negative bacteria were sensitive to amikacin (145/145) and only one Gram-positive isolate (99.65 ± 0.69%) was resistant to vancomycin. Multidrug resistance was observed in 31.54% of isolates; it was significantly higher in Gram-negative compared to Gram-positive bacteria (62/145; 42.76 ± 8% and 73/283; 25.79 ± 5.10%, respectively) (P<0.001). Multidrug resistance rate was significantly correlated to patients’ age (P<0.001) but not according to years. These results showed the presence of different bacteria species from human wound infections. The resistance to one or multiple antibiotics were frequent. It is recommended to reduce irrational use of antibiotics and a more frequent use of antibiogram before any antibiotic prescription.
{"title":"Bacteriological Profile and Antibiotic Resistance Patterns of Pus/Wound Samples in Humans with Infected Wounds in North Central Algeria","authors":"Asma Aiza, Rachid Kaidi, Moussa Ahmed, Baghdad Khiati","doi":"10.22207/jpam.17.3.24","DOIUrl":"https://doi.org/10.22207/jpam.17.3.24","url":null,"abstract":"The present study was carried out between 2016 and 2020 in Makour Hamou Public Hospital, Ain Defla district, North Centre of Algeria. The study aimed to characterise the antimicrobial resistance and multidrug resistance in bacteria isolated from 620 patients with purulent skin wounds. Out of the 428 bacterial isolates, 283 were Gram-positive (66.12 ± 4.48%) (P<0.001). A total number of 77 Staphylococcus aureus isolates were obtained, among them 31.2 ± 9.3% (24/77) were methicillin-resistant. The most frequent Gram-negative bacteria were Escherichia coli (30.34±7.4%), followed by Klebsiella pneumoniae (25.52±7.10%), and Pseudomonas aeruginosa (23.45±6.70%). All Staphylococcus aureus isolates (77/77) were sensitive to clindamycin. Escherichia coli isolates were resistant to several antibiotics with high resistance rates to amoxicillin (38/44; 86.4 ± 10.1%), amoxicillin-clavulanate (30/44; 68.2 ± 13.8%), cefazolin (21/44; 47.7 ± 7.5%) and trimethoprim-sulfamethoxazole (16/44; 36.4 ± 14.2%) (P<0.001). All Gram-negative bacteria were sensitive to amikacin (145/145) and only one Gram-positive isolate (99.65 ± 0.69%) was resistant to vancomycin. Multidrug resistance was observed in 31.54% of isolates; it was significantly higher in Gram-negative compared to Gram-positive bacteria (62/145; 42.76 ± 8% and 73/283; 25.79 ± 5.10%, respectively) (P<0.001). Multidrug resistance rate was significantly correlated to patients’ age (P<0.001) but not according to years. These results showed the presence of different bacteria species from human wound infections. The resistance to one or multiple antibiotics were frequent. It is recommended to reduce irrational use of antibiotics and a more frequent use of antibiogram before any antibiotic prescription.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":"81 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135049887","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
O. S. Chukwu, C. Uzoh, Isaiah Yusuf, K. Aroh, O.J. Owolabi, A.C. Kalu, M. M. Egwu-Ikechukwu, C. C. Nnabugwu, O.C. Azuama, D. Ilang, B. Ugwu, D. Okata-Nwali, C. Ugwuocha
Milk and foods made from milk is manufactured into more stable dairy products of worldwide value, such as butter, cheese, ice cream, and yoghurt. Consumption of contaminated milk or dairy products by pathogens causes human gastrointestinal infection, which leads to diarrheal disease in human and hospitalization or death in severe cases especially among elderly and children. An assessment of milk and dairy products was designed to determine the microbiological quality of milk and dairy products consumed in Abakaliki, Nigeria. Culture techniques were used for isolation of enteric bacteria from retail dairy products and disk diffusion method were used to determine the Antibiotic Resistance profile of isolates. Bacteria pathogens isolated were characterized and identified using morphological and biochemical techniques. SPSS and Chi-square test were used for the analysis of the study, P-value of 0.02 indicates a significant difference between the bacteria pathogens counts. A total of 161 pathogenic bacteria were isolated from 100 dairy products. Salmonella spp heard (26.1%), Escherichia coli (44.1%) and Shigella spp. (29.8%). All identified isolates were found to be 100% susceptible to ciprofloxacin and gentamycin, with 66.7% for ofloxacin. Augmentin, ampicillin, chloramphenicol and spectinomycin was 100% resistant. Data obtained confirm that milk and dairy products retailed in Abakaliki pose a serious public health threat to consumers due to the presence of pathogenic bacteria. Standard and good storage conditions, as well as environmental and personnel hygiene should be practiced to prevent contamination of milk and dairy products for the safety of consumers.
{"title":"Isolation, Identification and Antibiotic Resistance Profile of Public Health Threat Enteric Bacteria from Milk and Dairy Products Retail in Abakaliki, South-East, Nigeria","authors":"O. S. Chukwu, C. Uzoh, Isaiah Yusuf, K. Aroh, O.J. Owolabi, A.C. Kalu, M. M. Egwu-Ikechukwu, C. C. Nnabugwu, O.C. Azuama, D. Ilang, B. Ugwu, D. Okata-Nwali, C. Ugwuocha","doi":"10.22207/jpam.17.3.23","DOIUrl":"https://doi.org/10.22207/jpam.17.3.23","url":null,"abstract":"Milk and foods made from milk is manufactured into more stable dairy products of worldwide value, such as butter, cheese, ice cream, and yoghurt. Consumption of contaminated milk or dairy products by pathogens causes human gastrointestinal infection, which leads to diarrheal disease in human and hospitalization or death in severe cases especially among elderly and children. An assessment of milk and dairy products was designed to determine the microbiological quality of milk and dairy products consumed in Abakaliki, Nigeria. Culture techniques were used for isolation of enteric bacteria from retail dairy products and disk diffusion method were used to determine the Antibiotic Resistance profile of isolates. Bacteria pathogens isolated were characterized and identified using morphological and biochemical techniques. SPSS and Chi-square test were used for the analysis of the study, P-value of 0.02 indicates a significant difference between the bacteria pathogens counts. A total of 161 pathogenic bacteria were isolated from 100 dairy products. Salmonella spp heard (26.1%), Escherichia coli (44.1%) and Shigella spp. (29.8%). All identified isolates were found to be 100% susceptible to ciprofloxacin and gentamycin, with 66.7% for ofloxacin. Augmentin, ampicillin, chloramphenicol and spectinomycin was 100% resistant. Data obtained confirm that milk and dairy products retailed in Abakaliki pose a serious public health threat to consumers due to the presence of pathogenic bacteria. Standard and good storage conditions, as well as environmental and personnel hygiene should be practiced to prevent contamination of milk and dairy products for the safety of consumers.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":" ","pages":""},"PeriodicalIF":0.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45226138","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
R. Gopinath, A. Dhanasezhiyan, S. Krishnapriya, S. M. Prasanth, G. Thangam
Viral-borne diseases have recently gained significant public health importance in the current world. The Viral Research and Diagnostic Laboratory (VRDL) located at Government Theni Medical College (GTMC), Theni, Tamil Nadu, conducts the diagnosis of common virus infections. The purpose of this study is to investigate the seroprevalence of dengue (DENV) and chikungunya (CHIKV) virus infections, as well as their co-infection, in people who have clinical symptoms. From January 2018 to June 2023, serum samples were collected from clinically suspected patients at the tertiary care hospital in Theni, Tamil Nadu. DENV and CHIKV were detected using an enzyme-linked immunosorbent assay (ELISA) in all of the samples. A total of 16,997 cases were enrolled, out of which 11264/2971(26.3%) tested positive for Dengue IgM, 1395/288 (20.6%) for Dengue NS1 Ag, 19/3(15.7%) for IgG, followed by 4319/3388(8.9%) of CHIKV IgM. Fever (n = 16598, 97.6%) was the most prevalent clinical characteristic in all probable dengue and chikungunya patients. Other symptoms were chills (n = 11252, 66.1%), arthralgia (n = 10245, 60.2%), headache (n = 11354, 66.8%), and joint pain (n = 11256, 66.2%). The findings showed a lesser likelihood of acquiring both DENV and CHIKV infections at the same time; however, the risk is still not trivial. This study investigates the clinical presentation of Dengue-Chikungunya patients. The rising prevalence of dengue and chikungunya, as well as their co-infection, need thorough monitoring of endemic areas and good patient care management.
{"title":"A Retrospective Seroprevalence Study of Dengue, Chikungunya and Co-Infection virus: a Hospital Based Study from Theni, Tamil Nadu","authors":"R. Gopinath, A. Dhanasezhiyan, S. Krishnapriya, S. M. Prasanth, G. Thangam","doi":"10.22207/jpam.17.3.34","DOIUrl":"https://doi.org/10.22207/jpam.17.3.34","url":null,"abstract":"Viral-borne diseases have recently gained significant public health importance in the current world. The Viral Research and Diagnostic Laboratory (VRDL) located at Government Theni Medical College (GTMC), Theni, Tamil Nadu, conducts the diagnosis of common virus infections. The purpose of this study is to investigate the seroprevalence of dengue (DENV) and chikungunya (CHIKV) virus infections, as well as their co-infection, in people who have clinical symptoms. From January 2018 to June 2023, serum samples were collected from clinically suspected patients at the tertiary care hospital in Theni, Tamil Nadu. DENV and CHIKV were detected using an enzyme-linked immunosorbent assay (ELISA) in all of the samples. A total of 16,997 cases were enrolled, out of which 11264/2971(26.3%) tested positive for Dengue IgM, 1395/288 (20.6%) for Dengue NS1 Ag, 19/3(15.7%) for IgG, followed by 4319/3388(8.9%) of CHIKV IgM. Fever (n = 16598, 97.6%) was the most prevalent clinical characteristic in all probable dengue and chikungunya patients. Other symptoms were chills (n = 11252, 66.1%), arthralgia (n = 10245, 60.2%), headache (n = 11354, 66.8%), and joint pain (n = 11256, 66.2%). The findings showed a lesser likelihood of acquiring both DENV and CHIKV infections at the same time; however, the risk is still not trivial. This study investigates the clinical presentation of Dengue-Chikungunya patients. The rising prevalence of dengue and chikungunya, as well as their co-infection, need thorough monitoring of endemic areas and good patient care management.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":" ","pages":""},"PeriodicalIF":0.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47759599","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Chayan Sardar, Sukanta Bhadra, Hare Krishna Jana, Sandhimita Mondal
Antibiotic overuse in animal and human healthcare has led in the accumulation of potentially hazardous antibiotic residues, known as emerging contaminants. These residues contaminate animal products including meat, milk, and eggs, which humans then ingest. Furthermore, antibiotic residues from pharmaceutical firms, hospitals, and households reach wastewater treatment plants, providing an environment conducive to bacterial growth and dissemination. This, in turn, can result in the spread of antibiotic resistance genes (ARGs) among bacterial cells, posing serious threats to both human health and the environment. In the case of ARGs, conventional approaches for eliminating antibiotic residues from wastewater and aquatic habitats have proven ineffective. Recent study, however, has shown that the adsorption technique, particularly when low-cost and environmentally acceptable bioadsorbents such as sawdust, prawn shell waste, algae, and fungi are used, is highly successful in removing antibiotic residues. Bioadsorbents Microalgae, Terminalia catappa leaf, and siris seed pods, in particular, have shown outstanding removal efficiency for antibiotics such as tetracycline, dicloxacillin, and nitromidazole, reaching up to 98.74%. These investigations have shed insight on the fundamental principles of the adsorption process, revealing its ability to target ARGs and antibiotic-resistant bacteria as well as remove antibiotic residues. As a result, addressing the issue of antibiotic residues in the environment has become critical in order to protect human health and prevent the spread of antibiotic resistance. Adsorption, particularly when bioadsorbents are used, appears to be a promising and efficient method of combating antibiotic residues and limiting the spread of antibiotic resistance genes and antibiotic-resistant bacteria in aquatic settings.
{"title":"Harnessing the Power of Bio Adsorbents: A Review on Sustainable Approach to Eliminate Antibiotic Residues in Wastewater for Better Public Health","authors":"Chayan Sardar, Sukanta Bhadra, Hare Krishna Jana, Sandhimita Mondal","doi":"10.22207/jpam.17.3.29","DOIUrl":"https://doi.org/10.22207/jpam.17.3.29","url":null,"abstract":"Antibiotic overuse in animal and human healthcare has led in the accumulation of potentially hazardous antibiotic residues, known as emerging contaminants. These residues contaminate animal products including meat, milk, and eggs, which humans then ingest. Furthermore, antibiotic residues from pharmaceutical firms, hospitals, and households reach wastewater treatment plants, providing an environment conducive to bacterial growth and dissemination. This, in turn, can result in the spread of antibiotic resistance genes (ARGs) among bacterial cells, posing serious threats to both human health and the environment. In the case of ARGs, conventional approaches for eliminating antibiotic residues from wastewater and aquatic habitats have proven ineffective. Recent study, however, has shown that the adsorption technique, particularly when low-cost and environmentally acceptable bioadsorbents such as sawdust, prawn shell waste, algae, and fungi are used, is highly successful in removing antibiotic residues. Bioadsorbents Microalgae, Terminalia catappa leaf, and siris seed pods, in particular, have shown outstanding removal efficiency for antibiotics such as tetracycline, dicloxacillin, and nitromidazole, reaching up to 98.74%. These investigations have shed insight on the fundamental principles of the adsorption process, revealing its ability to target ARGs and antibiotic-resistant bacteria as well as remove antibiotic residues. As a result, addressing the issue of antibiotic residues in the environment has become critical in order to protect human health and prevent the spread of antibiotic resistance. Adsorption, particularly when bioadsorbents are used, appears to be a promising and efficient method of combating antibiotic residues and limiting the spread of antibiotic resistance genes and antibiotic-resistant bacteria in aquatic settings.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":" ","pages":""},"PeriodicalIF":0.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45654587","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Heavy metals (HMs) are widespread and vital to life, but their accumulation in organisms can be hazardous. Lead (Pb) has lately attracted considerable attention due to its devastating impacts on the environment and human health, such as its ability to produce neurodevelopmental disorders in children even at low exposure levels. Cardiovascular, renal, digestive, hematological, and reproductive consequences exist. The current review sheds light on the familiar sources of the HMs, their ecological hazards, the most common types with particular reference to Pb, its natural and artificial sources, physical and chemical characteristics, environmental and human health hazards, and control strategies using different approaches as remediation through (physical, chemical and biological strategies), microorganism-assisted bacteria with particular reference to the advantages and limitation of each approach. Through this review, we introduce a solution to eliminating the problem of Pb toxicity & accumulation in the food chain through endophytes bacteria, as it has high efficiency in treating lead toxicity. The presentation will show the mechanism of these microbes in treating lead toxicity.
{"title":"Lead: Natural Occurrence, Toxicity to Organisms and Bioremediation by Lead-degrading Bacteria: A Comprehensive Review","authors":"M. Ashkan","doi":"10.22207/jpam.17.3.26","DOIUrl":"https://doi.org/10.22207/jpam.17.3.26","url":null,"abstract":"Heavy metals (HMs) are widespread and vital to life, but their accumulation in organisms can be hazardous. Lead (Pb) has lately attracted considerable attention due to its devastating impacts on the environment and human health, such as its ability to produce neurodevelopmental disorders in children even at low exposure levels. Cardiovascular, renal, digestive, hematological, and reproductive consequences exist. The current review sheds light on the familiar sources of the HMs, their ecological hazards, the most common types with particular reference to Pb, its natural and artificial sources, physical and chemical characteristics, environmental and human health hazards, and control strategies using different approaches as remediation through (physical, chemical and biological strategies), microorganism-assisted bacteria with particular reference to the advantages and limitation of each approach. Through this review, we introduce a solution to eliminating the problem of Pb toxicity & accumulation in the food chain through endophytes bacteria, as it has high efficiency in treating lead toxicity. The presentation will show the mechanism of these microbes in treating lead toxicity.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":" ","pages":""},"PeriodicalIF":0.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46649765","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Thi Kim Cuc Nguyen, Thi Lan Pham, Thi Chinh Nguyen, T. T. Pham, V. D. Nguyen
The development of genetic technologies and bioengineering are creating an increasing number of genetically engineered microorganisms with new traits for diverse industrial applications such as vaccines, drugs and pollutant degraders. However, the destiny of genetically engineered bacterial spores released into the environment as long-life organisms has remained a big environmental challenge. In this study, an environmentally responsible and sustainable gene technology solution based on the concept of thymine starvation is successfully applied for cloning and expression of a Helicobacter pylori antigen on Bacillus subtilis spore surface. As an example, a recombinant Bacillus subtilis strain A1.13 has been created from a gene fusion of the corresponding N-terminal fragment of spore coat protein CotB in B. subtilis and the entire urease subunit A (UreA) in H. pylori and the fusion showed a high stability of spore surface expression. The outcomes can open the door for developing highly safe spore vectored vaccines against this kind of pathogen and contributing to reduced potential risks of genetically engineered microorganisms released in the environment.
{"title":"Environmentally Responsible Bioengineering for Spore Surface Expression of Helicobacter pylori Antigen","authors":"Thi Kim Cuc Nguyen, Thi Lan Pham, Thi Chinh Nguyen, T. T. Pham, V. D. Nguyen","doi":"10.22207/jpam.17.3.21","DOIUrl":"https://doi.org/10.22207/jpam.17.3.21","url":null,"abstract":"The development of genetic technologies and bioengineering are creating an increasing number of genetically engineered microorganisms with new traits for diverse industrial applications such as vaccines, drugs and pollutant degraders. However, the destiny of genetically engineered bacterial spores released into the environment as long-life organisms has remained a big environmental challenge. In this study, an environmentally responsible and sustainable gene technology solution based on the concept of thymine starvation is successfully applied for cloning and expression of a Helicobacter pylori antigen on Bacillus subtilis spore surface. As an example, a recombinant Bacillus subtilis strain A1.13 has been created from a gene fusion of the corresponding N-terminal fragment of spore coat protein CotB in B. subtilis and the entire urease subunit A (UreA) in H. pylori and the fusion showed a high stability of spore surface expression. The outcomes can open the door for developing highly safe spore vectored vaccines against this kind of pathogen and contributing to reduced potential risks of genetically engineered microorganisms released in the environment.","PeriodicalId":16968,"journal":{"name":"Journal of Pure and Applied Microbiology","volume":" ","pages":""},"PeriodicalIF":0.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42758134","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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