Pub Date : 2023-01-01Epub Date: 2023-09-28DOI: 10.5702/massspectrometry.A0129
Bharath S Kumar
Cancer metabolic variability has a significant impact on both diagnosis and treatment outcomes. The discovery of novel biological indicators and metabolic dysregulation, can significantly rely on comprehension of the modified metabolism in cancer, is a research focus. Tissue histology is a critical feature in the diagnostic testing of many ailments, such as cancer. To assess the surgical margin of the tumour on patients, frozen section histology is a tedious, laborious, and typically arbitrary method. Concurrent monitoring of ion images in tissues facilitated by the latest advancements in mass spectrometry imaging (MSI) is far more efficient than optical tissue image analysis utilized in conventional histopathology examination. This article focuses on the "desorption electrospray ionization (DESI)-MSI" technique's most recent advancements and uses in cancer research. DESI-MSI can provide wealthy information based on the variances in metabolites and lipids in normal and cancerous tissues by acquiring ion images of the lipid and metabolite variances on biopsy samples. As opposed to a systematic review, this article offers a synopsis of the most widely employed cutting-edge DESI-MSI techniques in cancer research.
{"title":"Recent Advances and Applications of Ambient Mass Spectrometry Imaging in Cancer Research: An Overview.","authors":"Bharath S Kumar","doi":"10.5702/massspectrometry.A0129","DOIUrl":"https://doi.org/10.5702/massspectrometry.A0129","url":null,"abstract":"<p><p>Cancer metabolic variability has a significant impact on both diagnosis and treatment outcomes. The discovery of novel biological indicators and metabolic dysregulation, can significantly rely on comprehension of the modified metabolism in cancer, is a research focus. Tissue histology is a critical feature in the diagnostic testing of many ailments, such as cancer. To assess the surgical margin of the tumour on patients, frozen section histology is a tedious, laborious, and typically arbitrary method. Concurrent monitoring of ion images in tissues facilitated by the latest advancements in mass spectrometry imaging (MSI) is far more efficient than optical tissue image analysis utilized in conventional histopathology examination. This article focuses on the \"desorption electrospray ionization (DESI)-MSI\" technique's most recent advancements and uses in cancer research. DESI-MSI can provide wealthy information based on the variances in metabolites and lipids in normal and cancerous tissues by acquiring ion images of the lipid and metabolite variances on biopsy samples. As opposed to a systematic review, this article offers a synopsis of the most widely employed cutting-edge DESI-MSI techniques in cancer research.</p>","PeriodicalId":18243,"journal":{"name":"Mass spectrometry","volume":"12 1","pages":"A0129"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/75/d3/massspectrometry-12-1-A0129.PMC10542858.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41139614","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The gain of the microchannel plate temporally drops after an ion initiates an electron avalanche. Electron multiplication was expected to deplete the charge from the microchannel wall and produce the depleted charge (wall charge). Moreover, it was reported that the gain drop occurred not only in the activated channels, where the electrons are multiplied, but also in the surrounding channels. One mechanism of the gain-drop spatial extension has been considered as that the wall charges in the activated channels change the electric field in the surrounding channels. Anacker et al. assumed that the wall charge is a uniform line charge; the gain-drop spatial extent should be proportional to the amount of the wall charges. We considered that the wall charges exponentially increased in the channel toward the exit. In this study, the electric field produced by the wall charges was calculated, considering the distribution of the wall charges. The transverse electric field generated by the wall charges was expected to disturb the electron trajectory near the channel exit and decrease the number of secondary electrons emitted per collision (gain per collision), resulting in a gain drop. The gain per collision was calculated to decrease by 22% for the position where the gain decreased significantly in the presence of the transverse electric field of 3×105 V/m. In our model, the gain-drop spatial extent extended proportionally to the square root of the wall charges when the distance from the activated channel exceeded 50 μm.
{"title":"Estimation of the Spatial Extent of the Transient Gain Drop in a Microchannel Plate.","authors":"Hiroshi Kobayashi, Toshinobu Hondo, Yasuo Kanematsu, Motohiro Suyama, Michisato Toyoda","doi":"10.5702/massspectrometry.A0134","DOIUrl":"10.5702/massspectrometry.A0134","url":null,"abstract":"<p><p>The gain of the microchannel plate temporally drops after an ion initiates an electron avalanche. Electron multiplication was expected to deplete the charge from the microchannel wall and produce the depleted charge (wall charge). Moreover, it was reported that the gain drop occurred not only in the activated channels, where the electrons are multiplied, but also in the surrounding channels. One mechanism of the gain-drop spatial extension has been considered as that the wall charges in the activated channels change the electric field in the surrounding channels. Anacker <i>et al</i>. assumed that the wall charge is a uniform line charge; the gain-drop spatial extent should be proportional to the amount of the wall charges. We considered that the wall charges exponentially increased in the channel toward the exit. In this study, the electric field produced by the wall charges was calculated, considering the distribution of the wall charges. The transverse electric field generated by the wall charges was expected to disturb the electron trajectory near the channel exit and decrease the number of secondary electrons emitted per collision (gain per collision), resulting in a gain drop. The gain per collision was calculated to decrease by 22% for the position where the gain decreased significantly in the presence of the transverse electric field of 3×10<sup>5</sup> V/m. In our model, the gain-drop spatial extent extended proportionally to the square root of the wall charges when the distance from the activated channel exceeded 50 μm.</p>","PeriodicalId":18243,"journal":{"name":"Mass spectrometry","volume":"12 1","pages":"A0134"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10632093/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89718843","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-02-28DOI: 10.5702/massspectrometry.A0101
T. Yamagaki, Kohtaro Sugahara, K. Fujikawa, Kazuto Washida
Paeoniflorin and albiflorin, which are functional isomers, are the major constituents of an herbal medicine derived from Paeonia lactiflora. Those functional isomers and their galloylated derivatives, which are positional isomers, were studied by matrix-assisted laser desorption/ionization–tandem mass spectrometry (MALDI-MS/MS). The resulting mass spectra are discussed based on the fragmentation patterns of the sodium adducts. The product ion spectra of 4-O-galloylalbiflorin and 4′-O-galloylpaeoniflorin differed, even though they were positional isomers. The fragmentations of the ester parts were influenced by the neighboring hydroxyl groups. The ionization efficiency of the sodium adduct of albiflorin was higher than that for paeoniflorin. These results indicate that the carboxylic ester group has a higher affinity for sodium ions than the acetal group, which can be attributed to the carbonyl oxygen being negatively polarized, allowing it to function as a Lewis base.
芍药苷和芍药苷是芍药中功能异构体的主要成分。采用基质辅助激光解吸/电离-串联质谱(MALDI-MS/MS)对这些功能异构体及其没食子酸衍生物进行了研究。根据钠加合物的破碎模式对质谱进行了讨论。4- o -没食子碱芍药苷和4 ' - o -没食子碱芍药苷虽然是位置异构体,但它们的产物离子光谱存在差异。酯部分的断裂受邻近羟基的影响。芍药苷钠加合物的电离效率高于芍药苷。这些结果表明,羧酸酯基团比缩醛基团对钠离子具有更高的亲和力,这可能是由于羰基氧被负极化,使其具有路易斯碱的功能。
{"title":"Fragmentation and Ionization Efficiency of Positional and Functional Isomers of Paeoniflorin Derivatives in Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry","authors":"T. Yamagaki, Kohtaro Sugahara, K. Fujikawa, Kazuto Washida","doi":"10.5702/massspectrometry.A0101","DOIUrl":"https://doi.org/10.5702/massspectrometry.A0101","url":null,"abstract":"Paeoniflorin and albiflorin, which are functional isomers, are the major constituents of an herbal medicine derived from Paeonia lactiflora. Those functional isomers and their galloylated derivatives, which are positional isomers, were studied by matrix-assisted laser desorption/ionization–tandem mass spectrometry (MALDI-MS/MS). The resulting mass spectra are discussed based on the fragmentation patterns of the sodium adducts. The product ion spectra of 4-O-galloylalbiflorin and 4′-O-galloylpaeoniflorin differed, even though they were positional isomers. The fragmentations of the ester parts were influenced by the neighboring hydroxyl groups. The ionization efficiency of the sodium adduct of albiflorin was higher than that for paeoniflorin. These results indicate that the carboxylic ester group has a higher affinity for sodium ions than the acetal group, which can be attributed to the carbonyl oxygen being negatively polarized, allowing it to function as a Lewis base.","PeriodicalId":18243,"journal":{"name":"Mass spectrometry","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-02-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89646098","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-02-25DOI: 10.5702/massspectrometry.A0102
S. Shimma
Mass spectrometry imaging (MSI) is a technique for obtaining information on the distribution of various molecules by performing mass spectrometry directly on the sample surface. The applications range from small molecules such as lipids to large molecules such as proteins. It is also possible to detect pharmaceuticals and elemental isotopes in interstellar matter. This review will introduce various applications of MSI with examples.
{"title":"Mass Spectrometry Imaging","authors":"S. Shimma","doi":"10.5702/massspectrometry.A0102","DOIUrl":"https://doi.org/10.5702/massspectrometry.A0102","url":null,"abstract":"Mass spectrometry imaging (MSI) is a technique for obtaining information on the distribution of various molecules by performing mass spectrometry directly on the sample surface. The applications range from small molecules such as lipids to large molecules such as proteins. It is also possible to detect pharmaceuticals and elemental isotopes in interstellar matter. This review will introduce various applications of MSI with examples.","PeriodicalId":18243,"journal":{"name":"Mass spectrometry","volume":"273 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-02-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"77551152","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-01-01Epub Date: 2022-08-10DOI: 10.5702/massspectrometry.A0104
Yoshinao Wada, Nobuhiko Okamoto
Congenital disorders of glycosylation (CDG) are inherited metabolic diseases that affect the synthesis of glycoconjugates. Defects in mucin-type O-glycosylation occur independently or in combination with N-glycosylation disorders, and the profiling of the O-glycans of apolipoprotein CIII (apoCIII) by mass spectrometry (MS) can be used to support a diagnosis. The biomarkers are site occupancy and sialylation levels, which are indicated by the content of non-glycosylated apoCIII0a isoform and by the ratio of monosialylated apoCIII1 to disialylated apoCIII2 isoforms, respectively. In this report, electrospray ionization (ESI) quadrupole MS of apoCIII was used to identify these biomarkers. Among the instrumental parameters, the declustering potential (DP) induced the fragmentation of the O-glycan moiety including the Thr-GalNAc linkage, resulting in an increase in apoCIII0a ions. This incurs the risk of creating a false positive for reduced site occupancy. The apoCIII1/apoCIII2 ratio was substantially unchanged despite some dissociation of sialic acids. Therefore, appropriate DP settings are especially important when transferrin, which requires a higher DP, for N-glycosylation disorders is analyzed simultaneously with apoCIII in a single ESI MS measurement. Finally, a reference range of diagnostic biomarkers and mass spectra of apoCIII obtained from patients with SLC35A1-, TRAPPC11-, and ATP6V0A2-CDG are presented.
{"title":"Electrospray Ionization Mass Spectrometry of Apolipoprotein CIII to Evaluate <i>O</i>-glycan Site Occupancy and Sialylation in Congenital Disorders of Glycosylation.","authors":"Yoshinao Wada, Nobuhiko Okamoto","doi":"10.5702/massspectrometry.A0104","DOIUrl":"10.5702/massspectrometry.A0104","url":null,"abstract":"<p><p>Congenital disorders of glycosylation (CDG) are inherited metabolic diseases that affect the synthesis of glycoconjugates. Defects in mucin-type <i>O</i>-glycosylation occur independently or in combination with <i>N</i>-glycosylation disorders, and the profiling of the <i>O</i>-glycans of apolipoprotein CIII (apoCIII) by mass spectrometry (MS) can be used to support a diagnosis. The biomarkers are site occupancy and sialylation levels, which are indicated by the content of non-glycosylated apoCIII0a isoform and by the ratio of monosialylated apoCIII1 to disialylated apoCIII2 isoforms, respectively. In this report, electrospray ionization (ESI) quadrupole MS of apoCIII was used to identify these biomarkers. Among the instrumental parameters, the declustering potential (DP) induced the fragmentation of the <i>O</i>-glycan moiety including the Thr-GalNAc linkage, resulting in an increase in apoCIII0a ions. This incurs the risk of creating a false positive for reduced site occupancy. The apoCIII1/apoCIII2 ratio was substantially unchanged despite some dissociation of sialic acids. Therefore, appropriate DP settings are especially important when transferrin, which requires a higher DP, for <i>N</i>-glycosylation disorders is analyzed simultaneously with apoCIII in a single ESI MS measurement. Finally, a reference range of diagnostic biomarkers and mass spectra of apoCIII obtained from patients with SLC35A1-, TRAPPC11-, and ATP6V0A2-CDG are presented.</p>","PeriodicalId":18243,"journal":{"name":"Mass spectrometry","volume":" ","pages":"A0104"},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9396207/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40346745","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-01-01Epub Date: 2022-04-15DOI: 10.5702/massspectrometry.A0103
Yoshinao Wada, Nobuhiko Okamoto
Electrospray ionization (ESI) mass spectrometry of transferrin can be used to diagnose congenital disorders of glycosylation (CDG) by detecting abnormal N-glycosylation due to reduced site occupancy or processing failure. Time-of-flight mass spectrometers are widely used to separate 25-45 charged ions in the m/z 1,700-3,000 range, and a summed zero-charge mass distribution is generated despite the risk of improper deconvolution. In this study, the low m/z region of the multiply-charged ion mass spectrum enabled a robust analysis of CDG. A triple quadrupole mass spectrometer, the standard instrument for newborn screening for inborn errors of metabolism, permitted the identification of the key ions characteristic of different types of CDG affecting PMM2, ALG14, SLC35A1, SLC35A2, MAN1B1 and PGM1 in the m/z 1,970-2,000 region. Charge deconvolution was used as a complementary tool for validating the findings. It was necessary to set a cutoff level for the evaluation, since small peaks indicating glycosylation failure or reduced sialylation were observed, even in control subjects. This method and workflow facilitates the implementation of MS-based analyses and the screening of CDG in clinical laboratories.
{"title":"Electrospray Ionization Mass Spectrometry of Transferrin: Use of Quadrupole Mass Analyzers for Congenital Disorders of Glycosylation.","authors":"Yoshinao Wada, Nobuhiko Okamoto","doi":"10.5702/massspectrometry.A0103","DOIUrl":"https://doi.org/10.5702/massspectrometry.A0103","url":null,"abstract":"<p><p>Electrospray ionization (ESI) mass spectrometry of transferrin can be used to diagnose congenital disorders of glycosylation (CDG) by detecting abnormal <i>N</i>-glycosylation due to reduced site occupancy or processing failure. Time-of-flight mass spectrometers are widely used to separate 25-45 charged ions in the <i>m</i>/<i>z</i> 1,700-3,000 range, and a summed zero-charge mass distribution is generated despite the risk of improper deconvolution. In this study, the low <i>m</i>/<i>z</i> region of the multiply-charged ion mass spectrum enabled a robust analysis of CDG. A triple quadrupole mass spectrometer, the standard instrument for newborn screening for inborn errors of metabolism, permitted the identification of the key ions characteristic of different types of CDG affecting <i>PMM2</i>, <i>ALG14</i>, <i>SLC35A1</i>, <i>SLC35A2</i>, <i>MAN1B1</i> and <i>PGM1</i> in the <i>m</i>/<i>z</i> 1,970-2,000 region. Charge deconvolution was used as a complementary tool for validating the findings. It was necessary to set a cutoff level for the evaluation, since small peaks indicating glycosylation failure or reduced sialylation were observed, even in control subjects. This method and workflow facilitates the implementation of MS-based analyses and the screening of CDG in clinical laboratories.</p>","PeriodicalId":18243,"journal":{"name":"Mass spectrometry","volume":" ","pages":"A0103"},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9395324/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40346746","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mass spectrometry imaging (MSI) without labeling has the potential for faster screening in drug development. Matrix-assisted laser desorption/ionization (MALDI) is typically used, but it has a large matrix size and uneven drug distribution. Surface-assisted laser desorption/ionization (SALDI) using nanoparticles (NPs) may overcome these issues. Here, the influence of NPs, solvent ratio, and order of dropping of NPs on SALDI-MSI of protoporphyrin IX (PpIX), a cancer drug, are reported. A solution of PpIX in a 50% aqueous solution of 50% acetonitrile at a concentration of 10 μM was used. The NPs include ZnO, Fe3O4, and four types of TiO2. The NPs were fabricated by dissolving them on an aqueous 90% acetonitrile solution. Mass spectra were obtained with a time-of-flight mass spectrometer using a Nd:YAG laser at a 355-nm wavelength. The signal intensity using TiO2 at a 0.5 mg/mL concentration in 50% acetonitrile was increased by 1.6-fold compared to that without TiO2. Changing the solvent to 90% acetonitrile gave a uniform TiO2 distribution and a 9-fold increase in the signal intensity for PpIX. Among the four types of TiO2 with different particle sizes and crystal structures, TiO2 with a smaller particle size and a rutile crystal structure produced the highest signal intensity. Forming a layer on top of the PpIX also resulted in an increased signal intensity. Hence, SALDI using TiO2 provides effective ionization of the drug. In the future, we plan to investigate a spray method for the ionization of PpIX using TiO2 for the MSI of various drugs.
{"title":"Improvement in Ionization Efficiency Using Metal Oxide Nanoparticles in Laser Desorption/Ionization Mass Spectrometry of a Cancer Drug.","authors":"Hiroki Kannen, Yuto Miyoshi, Hisanao Hazama, Kunio Awazu","doi":"10.5702/massspectrometry.A0099","DOIUrl":"https://doi.org/10.5702/massspectrometry.A0099","url":null,"abstract":"<p><p>Mass spectrometry imaging (MSI) without labeling has the potential for faster screening in drug development. Matrix-assisted laser desorption/ionization (MALDI) is typically used, but it has a large matrix size and uneven drug distribution. Surface-assisted laser desorption/ionization (SALDI) using nanoparticles (NPs) may overcome these issues. Here, the influence of NPs, solvent ratio, and order of dropping of NPs on SALDI-MSI of protoporphyrin IX (PpIX), a cancer drug, are reported. A solution of PpIX in a 50% aqueous solution of 50% acetonitrile at a concentration of 10 μM was used. The NPs include ZnO, Fe<sub>3</sub>O<sub>4</sub>, and four types of TiO<sub>2</sub>. The NPs were fabricated by dissolving them on an aqueous 90% acetonitrile solution. Mass spectra were obtained with a time-of-flight mass spectrometer using a Nd:YAG laser at a 355-nm wavelength. The signal intensity using TiO<sub>2</sub> at a 0.5 mg/mL concentration in 50% acetonitrile was increased by 1.6-fold compared to that without TiO<sub>2</sub>. Changing the solvent to 90% acetonitrile gave a uniform TiO<sub>2</sub> distribution and a 9-fold increase in the signal intensity for PpIX. Among the four types of TiO<sub>2</sub> with different particle sizes and crystal structures, TiO<sub>2</sub> with a smaller particle size and a rutile crystal structure produced the highest signal intensity. Forming a layer on top of the PpIX also resulted in an increased signal intensity. Hence, SALDI using TiO<sub>2</sub> provides effective ionization of the drug. In the future, we plan to investigate a spray method for the ionization of PpIX using TiO<sub>2</sub> for the MSI of various drugs.</p>","PeriodicalId":18243,"journal":{"name":"Mass spectrometry","volume":"10 1","pages":"A0099"},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8697360/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39792149","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-01-01Epub Date: 2021-06-10DOI: 10.5702/massspectrometry.A0096
Hiromori Murashima, Akimasa Fujihara
The gas-phase adsorption of N2 on protonated serine (Ser, C3H7NO3), threonine (Thr, C4H9NO3), glycine (Gly, C2H5NO2), and 2-aminoethanol (C2H7NO) was investigated using a tandem mass spectrometer equipped with an electrospray ionization source and a cold ion trap. N2 molecules were adsorbed on the free X-H (X=O and N) groups of protonated molecules. Gas-phase N2 adsorption-mass spectrometry detected the presence of free X-H groups in the molecular structures, and was applied to the structural elucidation of small molecules. When the 93 structures with an elemental composition of C3H7NO3 were filtered using the gas-phase N2 adsorption-mass spectrometry results for Ser, the number of possible molecular structures was reduced to 8 via the quantification of the X-H groups. Restricting and minimizing the number of possible candidates were effective steps in the structural elucidation process. Gas-phase N2 adsorption-mass spectrometry combined with mass spectrometry-based techniques has the potential for being useful for elucidating the molecular structures of a variety of molecules.
采用配备电喷雾电离源和冷离子阱的串联质谱仪研究了N2在质子化丝氨酸(Ser, C3H7NO3)、苏氨酸(Thr, C4H9NO3)、甘氨酸(Gly, C2H5NO2)和2-氨基乙醇(C2H7NO)上的气相吸附。N2分子吸附在质子化分子的自由X- h (X=O和N)基团上。气相N2吸附-质谱法检测了分子结构中游离X-H基团的存在,并应用于小分子的结构解析。采用气相N2吸附-质谱法对93种具有C3H7NO3元素组成的结构进行Ser的过滤,通过对X-H基团的定量分析,将可能的分子结构减少到8种。限制和减少可能的候选者的数量是结构解析过程中有效的步骤。气相N2吸附-质谱结合基于质谱的技术有可能用于阐明各种分子的分子结构。
{"title":"Gas-Phase Adsorption of N<sub>2</sub> on Protonated Molecules and Its Application to the Structural Elucidation of Small Molecules.","authors":"Hiromori Murashima, Akimasa Fujihara","doi":"10.5702/massspectrometry.A0096","DOIUrl":"https://doi.org/10.5702/massspectrometry.A0096","url":null,"abstract":"<p><p>The gas-phase adsorption of N<sub>2</sub> on protonated serine (Ser, C<sub>3</sub>H<sub>7</sub>NO<sub>3</sub>), threonine (Thr, C<sub>4</sub>H<sub>9</sub>NO<sub>3</sub>), glycine (Gly, C<sub>2</sub>H<sub>5</sub>NO<sub>2</sub>), and 2-aminoethanol (C<sub>2</sub>H<sub>7</sub>NO) was investigated using a tandem mass spectrometer equipped with an electrospray ionization source and a cold ion trap. N<sub>2</sub> molecules were adsorbed on the free X-H (X=O and N) groups of protonated molecules. Gas-phase N<sub>2</sub> adsorption-mass spectrometry detected the presence of free X-H groups in the molecular structures, and was applied to the structural elucidation of small molecules. When the 93 structures with an elemental composition of C<sub>3</sub>H<sub>7</sub>NO<sub>3</sub> were filtered using the gas-phase N<sub>2</sub> adsorption-mass spectrometry results for Ser, the number of possible molecular structures was reduced to 8 <i>via</i> the quantification of the X-H groups. Restricting and minimizing the number of possible candidates were effective steps in the structural elucidation process. Gas-phase N<sub>2</sub> adsorption-mass spectrometry combined with mass spectrometry-based techniques has the potential for being useful for elucidating the molecular structures of a variety of molecules.</p>","PeriodicalId":18243,"journal":{"name":"Mass spectrometry","volume":"10 1","pages":"A0096"},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8188007/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39238233","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-01-01Epub Date: 2021-10-14DOI: 10.5702/massspectrometry.A0098
Toshinobu Hondo, Michisato Toyoda
A time-of-flight mass spectrometer that uses a closed-orbit flight path can achieve a high mass resolving power and a high mass accuracy with a small instrument footprint. It has long been known that a drawback to a closed flight path is an obtained spectrum may contain peaks by ions at a different number of laps. A lower m/z ion may overtake higher m/z ions, resulting in the peak being superimposed on an acquired mass spectrum; therefore, such a mass bandwidth of the analyzer is limited to a narrow range given the current situation. However, recent research has documented a solution to the problem based on careful study of the equation of motion of an ion in a closed-path analyzer. All of the ions in the analyzer remain in motion in orbit by the nature of the closed flight path, thus resulting in a superimposed spectrum with the width of the orbital period of the highest mass in the sample matrix, which contains several different lap numbers. When target ions for the sample are known in advance, the time-of-flight for a given m/z can be determined regardless of the lap number under given analyzer conditions, and peak assignment can be self-validated by comparison to a mass spectrum acquired at a different lap condition. Furthermore, the m/z value for an unknown ion can also be determined by comparing time-of-flight values on spectra acquired at different lap conditions.
{"title":"A Method for Expanding Mass Range on a Multi-Turn Time-of-Flight Mass Spectrometer by a Lap Superimposed Spectrum.","authors":"Toshinobu Hondo, Michisato Toyoda","doi":"10.5702/massspectrometry.A0098","DOIUrl":"https://doi.org/10.5702/massspectrometry.A0098","url":null,"abstract":"<p><p>A time-of-flight mass spectrometer that uses a closed-orbit flight path can achieve a high mass resolving power and a high mass accuracy with a small instrument footprint. It has long been known that a drawback to a closed flight path is an obtained spectrum may contain peaks by ions at a different number of laps. A lower <i>m</i>/<i>z</i> ion may overtake higher <i>m</i>/<i>z</i> ions, resulting in the peak being superimposed on an acquired mass spectrum; therefore, such a mass bandwidth of the analyzer is limited to a narrow range given the current situation. However, recent research has documented a solution to the problem based on careful study of the equation of motion of an ion in a closed-path analyzer. All of the ions in the analyzer remain in motion in orbit by the nature of the closed flight path, thus resulting in a superimposed spectrum with the width of the orbital period of the highest mass in the sample matrix, which contains several different lap numbers. When target ions for the sample are known in advance, the time-of-flight for a given <i>m</i>/<i>z</i> can be determined regardless of the lap number under given analyzer conditions, and peak assignment can be self-validated by comparison to a mass spectrum acquired at a different lap condition. Furthermore, the <i>m</i>/<i>z</i> value for an unknown ion can also be determined by comparing time-of-flight values on spectra acquired at different lap conditions.</p>","PeriodicalId":18243,"journal":{"name":"Mass spectrometry","volume":"10 1","pages":"A0098"},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8514288/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39563876","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
CO3-• and O2-• are known to be strong oxidizing reagents in biological systems. CO3-• in particular can cause serious damage to DNA and proteins by H• abstraction reactions. However, H• abstraction of CO3-• in the gas phase has not yet been reported. In this work we report on gas-phase ion/molecule reactions of CO3-• and O2-• with various molecules. CO3-• was generated by the corona discharge of an O2 reagent gas using a cylindrical tube ion source. O2-• was generated by the application of a 15 kHz high frequency voltage to a sharp needle in ambient air at the threshold voltage for the appearance of an ion signal. In the reactions of CO3-•, a decrease in signal intensities of CO3-• accompanied by the simultaneous increase of that of HCO3- was observed when organic compounds with H-C bond energies lower than ∼100 kcal mol-1 such as n-hexane, cyclohexane, methanol, ethanol, 1-propanol, 2-propanol, and toluene were introduced into the ion source. This clearly indicates the occurrence of H• abstraction. O2-• abstracts H+ from acid molecules such as formic, acetic, trifluoroacetic, nitric and amino acids. Gas-phase CO3-• may play a role as a strong oxidizing reagent as it does in the condensed phase. The major discharge product CO3-• in addition to O2-•, O3, and NO x• that are formed in ambient air may cause damage to biological systems.
{"title":"Corona Discharge and Field Electron Emission in Ambient Air Using a Sharp Metal Needle: Formation and Reactivity of CO<sub>3</sub> <sup>-•</sup> and O<sub>2</sub> <sup>-•</sup>.","authors":"Kenzo Hiraoka, Stephanie Rankin-Turner, Satoshi Ninomiya, Haruo Shimada, Kazumasa Kinoshita, Shinichi Yamabe","doi":"10.5702/massspectrometry.A0100","DOIUrl":"https://doi.org/10.5702/massspectrometry.A0100","url":null,"abstract":"<p><p>CO<sub>3</sub> <sup>-•</sup> and O<sub>2</sub> <sup>-•</sup> are known to be strong oxidizing reagents in biological systems. CO<sub>3</sub> <sup>-•</sup> in particular can cause serious damage to DNA and proteins by H<sup>•</sup> abstraction reactions. However, H<sup>•</sup> abstraction of CO<sub>3</sub> <sup>-•</sup> in the gas phase has not yet been reported. In this work we report on gas-phase ion/molecule reactions of CO<sub>3</sub> <sup>-•</sup> and O<sub>2</sub> <sup>-•</sup> with various molecules. CO<sub>3</sub> <sup>-•</sup> was generated by the corona discharge of an O<sub>2</sub> reagent gas using a cylindrical tube ion source. O<sub>2</sub> <sup>-•</sup> was generated by the application of a 15 kHz high frequency voltage to a sharp needle in ambient air at the threshold voltage for the appearance of an ion signal. In the reactions of CO<sub>3</sub> <sup>-•</sup>, a decrease in signal intensities of CO<sub>3</sub> <sup>-•</sup> accompanied by the simultaneous increase of that of HCO<sub>3</sub> <sup>-</sup> was observed when organic compounds with H-C bond energies lower than ∼100 kcal mol<sup>-1</sup> such as <i>n</i>-hexane, cyclohexane, methanol, ethanol, 1-propanol, 2-propanol, and toluene were introduced into the ion source. This clearly indicates the occurrence of H<sup>•</sup> abstraction. O<sub>2</sub> <sup>-•</sup> abstracts H<sup>+</sup> from acid molecules such as formic, acetic, trifluoroacetic, nitric and amino acids. Gas-phase CO<sub>3</sub> <sup>-•</sup> may play a role as a strong oxidizing reagent as it does in the condensed phase. The major discharge product CO<sub>3</sub> <sup>-•</sup> in addition to O<sub>2</sub> <sup>-•</sup>, O<sub>3</sub>, and NO <i><sub>x</sub> <sup>•</sup></i> that are formed in ambient air may cause damage to biological systems.</p>","PeriodicalId":18243,"journal":{"name":"Mass spectrometry","volume":"10 1","pages":"A0100"},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8697365/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39792150","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}