Md. Shamim Hossain, Sanaa S. Al Abbad, Zainab H. A. Alsunaidi, Shofiur Rahman, Abdullah N. Alodhayb, Md. Mainul Hossain, Raymond A. Poirier, Kabir M. Uddin
This investigation employed computational methodologies to assess the therapeutic potential of derivatives (1–16) of pyridoxal isonicotinoyl hydrazone (PIH) as potential treatments for tuberculosis. Various computational techniques, including molecular dynamics simulation, molecular docking, density functional theory, and global chemical descriptors, were employed to analyze the interactions between the ligands and target proteins. Docking results indicated that ligands 6, 7, 8, and rifampin exhibited binding affinities of −8.4, −7.4, −9.2, and − 7.2 kcal mol−1, respectively, against mycobacterium tuberculosis enoyl acyl carrier protein reductase (INHA), with ligand 8 demonstrating superior inhibition. Molecular dynamics (MD) simulations were utilized to assess the stability of protein-ligand interactions. Remarkably, the Root Mean Square Deviation (RMSD) of the INHA-ligand 8 complex remained minimal, with peak values at .40, .56, .37, and .50 nm at temperatures of 300, 305, 310, and 320 K, respectively. This suggests superior stability compared to the reference drug rifampin and INHA complex, which exhibited an RMSD range of .2 to .8 nm at 300 K. Furthermore, analysis using Frontier Molecular Orbital (FMO) revealed that the Egap value of ligand 8 (4.407 eV) is lower than all the reference drugs except rifampin. This comprehensive theoretical analysis positions ligand 8 as a promising candidate for anti-tuberculosis drug development, underscoring the need for further exploration through in vitro and in vivo studies.
{"title":"Evaluation of novel pyridoxal isonicotinoyl hydrazone (PIH) derivatives as potential anti-tuberculosis agents: An in silico investigation","authors":"Md. Shamim Hossain, Sanaa S. Al Abbad, Zainab H. A. Alsunaidi, Shofiur Rahman, Abdullah N. Alodhayb, Md. Mainul Hossain, Raymond A. Poirier, Kabir M. Uddin","doi":"10.1002/qua.27381","DOIUrl":"https://doi.org/10.1002/qua.27381","url":null,"abstract":"<p>This investigation employed computational methodologies to assess the therapeutic potential of derivatives (<b>1</b>–<b>16</b>) of pyridoxal isonicotinoyl hydrazone (PIH) as potential treatments for tuberculosis. Various computational techniques, including molecular dynamics simulation, molecular docking, density functional theory, and global chemical descriptors, were employed to analyze the interactions between the ligands and target proteins. Docking results indicated that ligands <b>6</b>, <b>7</b>, <b>8</b>, and rifampin exhibited binding affinities of −8.4, −7.4, −9.2, and − 7.2 kcal mol<sup>−1</sup>, respectively, against mycobacterium tuberculosis enoyl acyl carrier protein reductase (INHA), with ligand <b>8</b> demonstrating superior inhibition. Molecular dynamics (MD) simulations were utilized to assess the stability of protein-ligand interactions. Remarkably, the Root Mean Square Deviation (RMSD) of the INHA-ligand <b>8</b> complex remained minimal, with peak values at .40, .56, .37, and .50 nm at temperatures of 300, 305, 310, and 320 K, respectively. This suggests superior stability compared to the reference drug rifampin and INHA complex, which exhibited an RMSD range of .2 to .8 nm at 300 K. Furthermore, analysis using Frontier Molecular Orbital (FMO) revealed that the Egap value of ligand 8 (4.407 eV) is lower than all the reference drugs except rifampin. This comprehensive theoretical analysis positions ligand <b>8</b> as a promising candidate for anti-tuberculosis drug development, underscoring the need for further exploration through in vitro and in vivo studies.</p>","PeriodicalId":182,"journal":{"name":"International Journal of Quantum Chemistry","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-04-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140807334","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ming-Xia Zhang, Jun Li, Hao Lei, Jia-Hui Chen, Peng-Yang Sun, Meng-Ting Yao, Lin Liu, Jia Guo
Due largely to the high stability and the potential ozone-depleting, the transformation of greenhouse gas nitrous oxide has gained much attentions. In present paper, a new insight into the deoxygenation of nitrous oxide with silane was reported by using oriented external electric field (OEEF) as a catalytic strategy. When the OEEF was employed, the reaction barrier of deoxygenation was marvelously decreased as it was oriented along the positive NO/OSi bond-axis. Especially the field strength is 300 × 10−4 a.u., the differences are up to 22.4/18.3 kcal mol−1 as compared with that of nonfield. In addition, once the H atom in SiH4 was replaced by methyl, two reaction modes were obtained, in which the deoxygenation process was easier when the N2O captured the H atom attached to the Si atom, not attached to the C atom. Further, the solvent effects of deoxygenation reaction were also considered, but with a weak influence were obtained.
由于一氧化二氮具有高稳定性和潜在的臭氧消耗性,温室气体一氧化二氮的转化备受关注。本文以定向外电场(OEEF)为催化策略,对氧化亚氮与硅烷的脱氧反应提出了新的见解。当使用定向外电场时,由于它是沿着正的 NO/OSi 键轴定向的,因此脱氧反应的反应障碍大大降低。特别是在场强为 300 × 10-4 a.u. 时,与无场时相比,差异高达 22.4/18.3 kcal mol-1。此外,一旦 SiH4 中的 H 原子被甲基取代,就会出现两种反应模式,其中当 N2O 捕获附着在 Si 原子上的 H 原子,而不是附着在 C 原子上时,脱氧过程更容易。此外,还考虑了脱氧反应的溶剂效应,但得到的影响较弱。
{"title":"Deoxygenation reactions of nitrous oxide assisted by oriented external electric field","authors":"Ming-Xia Zhang, Jun Li, Hao Lei, Jia-Hui Chen, Peng-Yang Sun, Meng-Ting Yao, Lin Liu, Jia Guo","doi":"10.1002/qua.27384","DOIUrl":"https://doi.org/10.1002/qua.27384","url":null,"abstract":"<p>Due largely to the high stability and the potential ozone-depleting, the transformation of greenhouse gas nitrous oxide has gained much attentions. In present paper, a new insight into the deoxygenation of nitrous oxide with silane was reported by using oriented external electric field (OEEF) as a catalytic strategy. When the OEEF was employed, the reaction barrier of deoxygenation was marvelously decreased as it was oriented along the positive NO/O<span></span>Si bond-axis. Especially the field strength is 300 × 10<sup>−4</sup> a.u., the differences are up to 22.4/18.3 kcal mol<sup>−1</sup> as compared with that of nonfield. In addition, once the H atom in SiH<sub>4</sub> was replaced by methyl, two reaction modes were obtained, in which the deoxygenation process was easier when the N<sub>2</sub>O captured the H atom attached to the Si atom, not attached to the C atom. Further, the solvent effects of deoxygenation reaction were also considered, but with a weak influence were obtained.</p>","PeriodicalId":182,"journal":{"name":"International Journal of Quantum Chemistry","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-04-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140807311","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
D. Bahara, Samah Al-Qaisi, Boumaza Akila, Ashim Dutta, T. Mundad, Ayman S. Alofi, Youssef Bakkour
Making products that are affordable, environmentally friendly, and energy-efficient is the main objective of modern production. The objective of this research is to discover compounds that meet these parameters. The full-potential, linearized augmented plane wave program (FP LAPW) offered by Wien2K was used to examine the structural, optical, electrical, and transport aspects of SrCaGe and SrCaSn Half-Heusler (HHs) compounds. Generalized gradient approximation (GGA) was considered for the structural optimization and computation of elastic properties signifies inherent ductility and mechanical stability of the examined SrCaGe and SrCaSn compounds. Additionally, both materials were found to possess a direct bandgap and exhibit semiconducting behavior. The bandgap magnitudes obtained utilizing the modified Becke-Johnson (mBJ) approximation are 0.78 and 0.52 eV for SrCaGe and SrCaSn, respectively. According to their optical characteristics, SrCaGe and SrCaSn show potential for application in optoelectronic components. Furthermore, the transport properties are evaluated by BoltzTrap program, revealing that both SrCaGe and SrCaSn exhibit figures of merit (ZT) values nearly equal to one at room temperature. This suggests their potential use in creating thermoelectric devices with highly efficient performance. The simulation study demonstrates the promising attributes of SrCaGe and SrCaSn HHs materials, positioning them as viable candidates for various applications, aligned with the goals of sustainable and efficient manufacturing.
{"title":"Exploring structural, optoelectronic, and thermoelectric properties of SrCaGe and SrCaSn half Heusler compounds","authors":"D. Bahara, Samah Al-Qaisi, Boumaza Akila, Ashim Dutta, T. Mundad, Ayman S. Alofi, Youssef Bakkour","doi":"10.1002/qua.27375","DOIUrl":"https://doi.org/10.1002/qua.27375","url":null,"abstract":"<p>Making products that are affordable, environmentally friendly, and energy-efficient is the main objective of modern production. The objective of this research is to discover compounds that meet these parameters. The full-potential, linearized augmented plane wave program (FP LAPW) offered by Wien2K was used to examine the structural, optical, electrical, and transport aspects of SrCaGe and SrCaSn Half-Heusler (HHs) compounds. Generalized gradient approximation (GGA) was considered for the structural optimization and computation of elastic properties signifies inherent ductility and mechanical stability of the examined SrCaGe and SrCaSn compounds. Additionally, both materials were found to possess a direct bandgap and exhibit semiconducting behavior. The bandgap magnitudes obtained utilizing the modified Becke-Johnson (mBJ) approximation are 0.78 and 0.52 eV for SrCaGe and SrCaSn, respectively. According to their optical characteristics, SrCaGe and SrCaSn show potential for application in optoelectronic components. Furthermore, the transport properties are evaluated by BoltzTrap program, revealing that both SrCaGe and SrCaSn exhibit figures of merit (ZT) values nearly equal to one at room temperature. This suggests their potential use in creating thermoelectric devices with highly efficient performance. The simulation study demonstrates the promising attributes of SrCaGe and SrCaSn HHs materials, positioning them as viable candidates for various applications, aligned with the goals of sustainable and efficient manufacturing.</p>","PeriodicalId":182,"journal":{"name":"International Journal of Quantum Chemistry","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-04-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140807327","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
M. C. Shanmukha, A. Usha, V. R. Kulli, K. C. Shilpa
Chemical graph theory facilitates different tools that have significant applications in drug design and development. Recently Gutman et al., introduced a novel vertex-degree-based topological index called elliptic Sombor index and its application through geometric approach. This article focuses on chemical applicability of elliptic Sombor index through regression models using 22 benzenoid hydrocarbons. In this process, the chemical applicability of elliptic Sombor index with various physicochemical properties of benzenoid hydrocarbons through curvilinear regression models is carried out. The data of the statistical analysis shows that elliptic Sombor index is potential predictive index for the property polarizability.
{"title":"Chemical applicability and curvilinear regression models of vertex-degree-based topological index: Elliptic Sombor index","authors":"M. C. Shanmukha, A. Usha, V. R. Kulli, K. C. Shilpa","doi":"10.1002/qua.27376","DOIUrl":"https://doi.org/10.1002/qua.27376","url":null,"abstract":"<p>Chemical graph theory facilitates different tools that have significant applications in drug design and development. Recently Gutman et al., introduced a novel vertex-degree-based topological index called elliptic Sombor index and its application through geometric approach. This article focuses on chemical applicability of elliptic Sombor index through regression models using 22 benzenoid hydrocarbons. In this process, the chemical applicability of elliptic Sombor index with various physicochemical properties of benzenoid hydrocarbons through curvilinear regression models is carried out. The data of the statistical analysis shows that elliptic Sombor index is potential predictive index for the property polarizability.</p>","PeriodicalId":182,"journal":{"name":"International Journal of Quantum Chemistry","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-04-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140807328","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Rovibrational configuration interaction theory has been used to study the rotational spectrum and low lying rovibrational states of thiopropynal, a molecule, which has recently been detected in an interstellar cloud. Geometrical parameters, fundamental vibrational transitions and spectroscopic constants are also provided. All calculations rely on an