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Aucubin as a Natural Therapeutic and Optical Material: A Computational Study on Its Structural, Spectroscopic, and Photonic Properties 作为一种天然的治疗和光学材料:其结构、光谱和光子特性的计算研究
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-05-12 DOI: 10.1002/qua.70054
Gaurav Jadav, Sandhya Dodia, Pradhumansinh Kher, Priyank Shah, Dharmesh Kataria, Ranjan C. Khunt, D. K. Dhruv, Bharat Kataria, Vaibhav Bhatt, J. H. Markna

The structural and electronic properties of Aucubin, a bioactive iridoid glycoside, were thoroughly investigated using Density Functional Theory (DFT) with the B3LYP functional and the 6-311++G(d,p) basis set. Geometry optimization, energy computations, and electronic characteristics were determined, yielding an ultimate energy value of −1261.3556 Hartree. Natural atomic charges (NAC), frontier molecular orbitals (FMO), and molecular electrostatic potential (MEP) maps were examined to elucidate the compound's reactivity and stability. Additionally, simulation-based spectroscopic analyses, including FTIR, UV–Vis, and NMR, were performed to characterize the vibrational and electronic transitions of Aucubin. The findings indicate a narrow HOMO-LUMO gap (0.16189 a.u.), suggesting significant chemical reactivity and potential applicability in photonic communication devices. This comprehensive study enhances our understanding of Aucubin's structural and electronic properties, paving the way for future applications in pharmaceutical and photonic fields.

采用密度泛函理论(DFT),采用B3LYP泛函和6-311++G(d,p)基集,研究了具有生物活性的环烯醚萜苷Aucubin的结构和电子性质。几何优化、能量计算和电子特性确定,最终能量值为−1261.3556 Hartree。利用自然原子电荷图(NAC)、前沿分子轨道图(FMO)和分子静电势图(MEP)分析了化合物的反应性和稳定性。此外,基于模拟的光谱分析,包括FTIR, UV-Vis和NMR,进行了表征桃叶甙的振动和电子跃迁。研究结果表明,HOMO-LUMO的差距很小(0.16189 a.u.),表明其具有显著的化学反应性和在光子通信器件中的潜在适用性。这项全面的研究增加了我们对桃叶甙结构和电子性质的了解,为今后在制药和光子领域的应用铺平了道路。
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引用次数: 0
Theoretical Study of Be2+·(N2)n Clusters (n = 1–4): Structural Configurations, Binding Energies, and Electrostatic Interactions Be2+·(N2)n簇(n = 1-4)的理论研究:结构构型、结合能和静电相互作用
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-05-12 DOI: 10.1002/qua.70057
Mohammed I. Alomari, Jamal N. Dawoud, Taher S. Ababneh, Eyad A. Younes, Samer M. Hamzeh

The structures and binding energies of the Be2+·(N2)n complexes have been determined utilizing the CCSD/aug-cc-pVTZ computational method. For the mono- and di-ligated complexes, a linear configuration was observed, while tri- and tetra-ligated complexes exhibited trigonal planar and tetrahedral geometries, respectively. The sequential bond dissociation energies for these complexes were calculated, revealing a specific hierarchy: Be2+·N2 > Be2+·(N2)2 > Be2+·(N2)3 > Be2+·(N2)4. This sequence corresponds to the variations in the strength of the ion-quadrupole interaction energies present in these complexes. Bond analysis of these complexes indicates that σ-donation is the primary factor influencing the observed trend in the sequential bond dissociation energies.

利用CCSD/aug-cc-pVTZ计算方法测定了Be2+·(N2)n配合物的结构和结合能。单键和双键配合物呈线性构型,而三键和四键配合物分别呈三角形平面和四面体几何形状。计算了这些配合物的顺序键离解能,揭示了一个特定的层次结构:Be2+·N2 >; Be2+·(N2)2 > Be2+·(N2)3 > Be2+·(N2)4。这个序列对应于这些配合物中存在的离子-四极相互作用能量强度的变化。这些配合物的键分析表明,σ-给能是影响顺序键离解能变化趋势的主要因素。
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引用次数: 0
Automatized Platform for Bandgap Optimization in Diarylethene Derivatives via Structural Substitutions 基于结构取代的二乙烯衍生物带隙优化自动化平台
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-05-09 DOI: 10.1002/qua.70052
Edoardo Fabbrini, Linh Thi Hoai Nguyen, Yasuhide Fukumoto, Yu Kaneko, Pierluigi Cesana

This study presents an automated framework for discovering Diarylethene derivatives with specific HOMO-LUMO bandgaps by integrating first-principles calculations with evolutionary optimization algorithms. We develop a protocol for performing automatic, parallel Density Functional Theory calculations using Turbomole, enabled by the Atomic Simulation Environment Python wrapper. This integration allows for fully autonomous evolutionary searches, removing the need for human intervention. To evaluate our platform, we conduct searches within the chemical space of Diarylethene using two optimization strategies: A “local” strategy, which explores local neighborhoods, and a “glocal” strategy, which combines local exploration with memory of past achievements.

本研究提出了一个自动化框架,通过将第一性原理计算与进化优化算法相结合,发现具有特定HOMO-LUMO带隙的二乙烯衍生物。我们开发了一个协议,用于使用Turbomole执行自动并行密度泛函理论计算,由Atomic Simulation Environment Python封装器启用。这种集成允许完全自主的进化搜索,消除了人工干预的需要。为了评估我们的平台,我们使用两种优化策略在二乙烯的化学空间内进行搜索:一种是“局部”策略,它探索局部邻域;另一种是“全局”策略,它将局部探索与过去成就的记忆结合起来。
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引用次数: 0
Hydrogen Atom Confined in Gaussian Potential: Polarizabilities, Hyperpolarizabilities, and Stark Shifts in an External Electric Field 限制在高斯势中的氢原子:外电场内的极化性、超极化性和斯塔克位移
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-04-24 DOI: 10.1002/qua.70051
Zhi Ling Zhou, Xiao Hu Ji, Henry E. Montgomery Jr., Yew Kam Ho, Aihua Liu, Li Guang Jiao

The dipole polarizability and hyperpolarizability of the hydrogen atom confined in spherical Gaussian potential under the influence of an external electric field are calculated within the sum-over-states framework, where all system eigenenergies and wave functions are obtained using the generalized pseudospectral method. It is interestingly found that the Gaussian potential produces a stronger suppression effect on the hyperpolarizability than on the polarizability, especially at moderate values of confinement radius. By analyzing the second- and fourth-order energy corrections for the ground state of the hydrogen atom under an external electric field, we define the maximal electric field strength where the perturbation approximation of the field–atom interaction is applicable. Based on the accurate ground state energies, polarizabilities, and hyperpolarizabilities, as well as the corresponding Z$$ Z $$-scaling laws, the Stark shifts of hydrogenic ions confined in Gaussian potentials are estimated over a wide range of confinement radius and potential depth.

本文计算了外加电场作用下球形高斯势中氢原子的偶极极化率和超极化率,其中所有的系统本征能和波函数都是用广义伪谱法得到的。有趣的是,高斯势对超极化率的抑制作用强于对极化率的抑制作用,特别是在适度的约束半径值下。通过分析在外加电场作用下氢原子基态的二阶和四阶能量修正,我们定义了场-原子相互作用的微扰近似适用的最大电场强度。基于精确的基态能量、极化率和超极化率,以及相应的Z $$ Z $$标度定律,在较宽的约束半径和势深范围内,估计了受高斯势约束的氢离子的Stark位移。
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引用次数: 0
A New Design Strategy for Constructing Powerful Cage Energetic Compounds With Low Sensitivity: The Combination of a Nitrogen-Rich Cage, Nitro Groups, and Amino Groups Based on a One-Step Reaction With the Perfect Atomic Efficiency 构建低灵敏度强笼形含能化合物的新设计策略:基于一步反应的富氮笼、硝基和氨基组合,具有完美的原子效率
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-04-22 DOI: 10.1002/qua.70050
Jing Lv, Guanchen Dong, Zusheng Hang, Weihua Zhu, Qiong Wu, Linghua Tan

In the present study, a novel strategy for constructing new cage energetic compounds with both high energy and low sensitivity was proposed. That is to use a 3D nitrogen-rich cage compound as the core parent molecule to set the basis for obtaining high energy, followed by the introduction of a moderate number of nitro groups into the cage, which are linked with the carbon atoms to further improve the energy without increasing the sensitivity obviously and controlling the reaction difficulty caused by too many nitro groups as low as possible. The amino groups were introduced into the structure also to adjust the balance of energy and sensitivity. Finally, more importantly, the formation of nitrogen-rich cage and the introduction of nitro/amino groups were achieved synchronously by a typical and attractive one-step reaction (The Diels–Alder reaction) which possesses 100% atomic efficiency. Based on this strategy, six series of amino-substituted nitrogen-rich azoles were used as the dienes to react with different dienophiles like tetranitroethylene (TNE) to form the final cage products. From the theoretical investigation results, five optimal compounds (PA0, PB0, PC0, PE0, PE1) with low reaction energy barrier (11.2–31.6 kcal/mol) may set the high energy of CL-20 and low sensitivity of TNT together, and have been screened out as new advanced energetic compounds successfully. This study may provide a new feasible strategy and a unique perspective for developing new advanced energetic compounds.

本研究提出了一种构建高能量低灵敏度笼形含能化合物的新策略。即以三维富氮笼化合物为核心母分子,为获得高能量奠定基础,然后在笼中引入适量的硝基,并与碳原子连接,在不明显增加灵敏度的前提下进一步提高能量,尽可能降低因硝基过多而引起的反应难度。在结构中引入氨基也可以调节能量平衡和灵敏度。最后,更重要的是,富氮笼的形成和硝基/氨基的引入是通过典型的一步反应(Diels-Alder反应)同步实现的,该反应具有100%的原子效率。在此基础上,以六系氨基取代的富氮唑作为二烯,与四亚乙烯(TNE)等不同的亲二烯试剂反应,形成最终的笼状产物。理论研究结果表明,具有较低反应能垒(11.2 ~ 31.6 kcal/mol)的5种最佳化合物(PA0、PB0、PC0、PE0、PE1)可以将CL-20的高能量与TNT的低灵敏度结合在一起,并成功筛选出作为新型高级含能化合物。本研究为开发新型高级含能化合物提供了新的可行策略和独特视角。
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引用次数: 0
Critical Stability of a Model Two-Electron System With Tunable Interelectronic Repulsion 具有可调谐电子间排斥的模型双电子系统的临界稳定性
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-04-22 DOI: 10.1002/qua.70042
Mariusz Pawlak, Santanu Mondal, Anjan Sadhukhan, Kalidas Sen, Jayanta K. Saha

The stability of a model two-electron system with tunable interelectronic repulsion has been explored with respect to a scaling parameter κ$$ kappa $$. The complex scaling method within an orbital-based configuration expansion and the Ritz variational method with an explicitly correlated Hylleraas-type basis set are considered for this purpose. An estimation of critical scaling parameter κc$$ {kappa}_c $$, at which the bound state transforms into a shape resonance state, is reported. The position and width of the quasibound state for κ>κc$$ kappa >{kappa}_c $$ are calculated by adopting the complex scaling method. The onset of quantum phase transition in the vicinity of κc$$ {kappa}_c $$ is discussed through the estimation of geometrical properties such as radial moments.

具有可调谐电子间排斥的模型双电子系统的稳定性已经探索了一个尺度参数κ $$ kappa $$。为此,考虑了基于轨道的构型展开内的复标度方法和具有显式相关hyleraas型基集的Ritz变分方法。本文报道了临界尺度参数κ c $$ {kappa}_c $$的估计,在此点束缚态转变为形状共振态。κ &gt;准束缚态的位置和宽度κ c $$ kappa >{kappa}_c $$采用复标度法计算。通过对径向矩等几何性质的估计,讨论了κ c $$ {kappa}_c $$附近的量子相变的开始。
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引用次数: 0
Theoretical Investigations of Intra- and Inter- Interactions of Wogonin and Wogonoside 枸杞子苷与枸杞子苷内相互作用的理论研究
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-04-18 DOI: 10.1002/qua.70048
Xiong Li, Renli Xu, Gang Li, Jiadong Xie, Chenjun Hu, Mingyue Xia, Tao Yang

Wogonin and wogonoside are derived from the traditional Chinese medicine Scutellaria baicalensis. Due to their various biological activities, the research on their various properties has simulated great interest. In this work, we systematically and theoretically studied the intra- and inter- interactions of wogonin and wogonoside. For intra- interactions, their details were exhibited with the help of IRI, BO, and LOL-π. To predict inter-interactions, the results of ESP, van der Waals potential, and hydrogen and hydrophobic interactions were shown. Our meaningful research results will provide theoretical guidance for more efficient utilization of wogonin and wogonoside for corresponding studies, and will help confirm the structure–activity relationship, an essential topic nowadays, of these two molecules.

枸杞子苷和枸杞子皂苷均来源于中药黄芩。由于它们具有多种生物活性,对其各种性质的研究引起了人们极大的兴趣。本文从理论上系统地研究了枸杞苷和枸杞皂苷的相互作用。对于内部相互作用,它们的细节通过IRI, BO和LOL-π来显示。为了预测相互作用,我们给出了电离能、范德华势以及氢和疏水相互作用的结果。我们有意义的研究结果将为更有效地利用枸杞苷和枸杞皂苷进行相应的研究提供理论指导,并有助于确定这两种分子的构效关系,这是当今的一个重要课题。
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引用次数: 0
Density Functional Theory Calculation of Hydroxyl Radical Formation by Fenton and Fenton-Like Reactions 芬顿和类芬顿反应生成羟基自由基的密度泛函理论计算
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-04-16 DOI: 10.1002/qua.70046
Makoto Yamaguchi

Reaction free energies of hydrogen peroxide (H2O2) and hydrated transition metal ions to form hydroxyl radical, which is known as Fenton or Fenton-like reactions, are calculated by DFT methods. Standard electrode potentials of M2+/M3+ (M = Ti, V, Cr, Mn, Fe, Co) in aqueous solutions are calculated as benchmarks for the selected hybrid functionals and the basis sets. Mean absolute errors of the calculated redox potentials are comparable to those of the previous DLPNO-CCSD(T) calculation in most of the combinations. In contrast, calculated Gibbs free energies of hydroxyl radical formation are dependent on the choice of the functionals, and PBE0 gives the best results. The effect of anion substitution in the first hydration shell and Fenton-like reactions of other metal ions (Ti3+, V2+, Cr2+, Mn2+) are also examined.

过氧化氢(H2O2)与水合过渡金属离子形成羟基自由基的反应自由能,称为Fenton或类Fenton反应,用DFT方法计算。计算了水溶液中M2+/M3+ (M = Ti, V, Cr, Mn, Fe, Co)的标准电极电位,作为所选杂化官能团和基集的基准。在大多数组合中,计算的氧化还原电位的平均绝对误差与先前的DLPNO-CCSD(T)计算相当。而羟基自由基形成的吉布斯自由能的计算取决于官能团的选择,PBE0给出了最好的结果。还考察了阴离子取代对第一水化壳的影响,以及其他金属离子(Ti3+, V2+, Cr2+, Mn2+)的类芬顿反应。
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引用次数: 0
Theoretical Understanding of LaTaON2 Decorated With Metal Cocatalysts for Photocatalytic Hydrogen Evolution Reaction 金属修饰LaTaON2光催化析氢反应的理论认识
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-04-11 DOI: 10.1002/qua.70047
Xiang Zhang, Yue Liu, Xin Zhou

LaTaON2 is a promising visible-light-responsive photocatalyst for water splitting because of its broad visible light absorption and suitable band edge positions. However, the high defect concentration hinders the charge transfer and results in the poor photocatalytic performance of LaTaON2. Loading proper cocatalysts is one of the most efficient strategies for promoting charge separation/transfer and achieving high reaction activity. In this work, we have used density functional theory calculations to study the depositions of Pt, Ru, and Ni single atom cocatalysts on LaTaON2(010) surface. The most stable adsorption configuration is the same site for all the elements, namely the top of the N atom on the La-terminated surface and the fourfold hollow site on the Ta-terminated surface. The adsorption of the metal single atom on Ta-termination is stronger than that on La-termination due to the formation of more bonds. Upon the deposition, no localized impurity states appear in the middle of the forbidden gap since the nd states of metal adatoms are located within the valence band and conduction band of LaTaON2. The efficiency of the photocatalysts is probed by investigating their ability to adsorb the H atom in a thermodynamically favorable manner. Our results reveal that the energetically favorable sites of HER are the N atom on the La-termination and the O and N atoms on the Ta-termination, respectively. Compared with the clean surface, the surfaces with Pt, Ru, and Ni single adatoms exhibit higher performance for HER because loading metal cocatalysts can further activate the surface nonmetal atoms and reduce the Gibbs free energy of hydrogen adsorption. The work gives an atom-level insight into the role of metal single atom cocatalysts in the LaTaON2 photocatalyst for hydrogen production.

LaTaON2具有广泛的可见光吸收和合适的能带边缘位置,是一种很有前途的可见光响应水分解光催化剂。然而,较高的缺陷浓度阻碍了电荷转移,导致LaTaON2的光催化性能较差。负载适当的助催化剂是促进电荷分离/转移和获得高反应活性的最有效策略之一。在这项工作中,我们使用密度泛函理论计算研究了Pt, Ru和Ni单原子助催化剂在LaTaON2(010)表面的沉积。最稳定的吸附构型是所有元素的相同位置,即端la表面的N原子顶部和端ta表面的四重空心位置。金属单原子在ta端上的吸附比在la端上的吸附强,因为ta端会形成更多的键。在沉积过程中,由于金属吸附原子的nd态位于LaTaON2的价带和导带内,在禁隙中间没有局域杂质态出现。光催化剂的效率是通过研究它们以热力学有利的方式吸附H原子的能力来探测的。我们的结果表明,HER的能量有利位置分别是la端上的N原子和ta端上的O和N原子。与清洁表面相比,含有Pt、Ru和Ni单原子的表面表现出更高的HER性能,这是因为负载金属助催化剂可以进一步激活表面非金属原子,降低氢吸附的吉布斯自由能。这项工作从原子水平上深入了解了金属单原子助催化剂在用于制氢的LaTaON2光催化剂中的作用。
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引用次数: 0
Study of the Plasma Ion Screening Effect on the Level Delocalization, Radiation Properties and Electron Collision Ionization of Plasma-Immersed Hydrogen Atoms 等离子体离子筛选效应对等离子体浸没氢原子的能级析出、辐射特性和电子碰撞电离的影响研究
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-04-11 DOI: 10.1002/qua.70045
Zhan-Bin Chen

This manuscript introduces a relativistic method to determine the electronic structure and electron collision ionization process of atoms placed in a semiclassical plasma. The method uses the effective interaction pseudo-potential derived for general two interacting charged particles taking into account the quantum mechanical and screening effects to model the plasma environment. The Dirac equation with the aforementioned pseudo-potential is solved numerically to obtain the bound state and continuous state wave functions. The method starts from the Dirac equation and thus includes the relativistic effects on the one-electron level. The effects coming from the Breit interaction and quantum electrodynamics corrections are included. As a representative example, we investigate the plasma electron screening effect and the plasma ion screening effect, separated and combined, on the level delocalization and electron collision ionization process of hydrogen atoms placed in a strongly coupled semiclassical plasma environment. Properties of the spectra such as energies, oscillator strengths, and relativistic energy shifts corresponding to bound states are determined. The relativistic distorted wave method is used to provide a consistent and elaborate description of the ionization cross sections of the electron collisions involved. Our results reveal that the plasma electron shielding effect contributes to a reduced ionization potential and oscillator strength, while increasing the electron impact ionization cross section, when compared with the results of an isolated scenario. When the plasma ion shielding effect is included, these observed alterations are further enhanced, highlighting the considerable role of the plasma ion shielding effect in this process. Our results are in agreement with other theoretical data. The present study not only extends the relativistic distorted wave approach to the analysis of collision processes in semiclassical plasmas and evaluates the impact of the plasma ion screening effect but also has practical implications for radiation physics, inertial confinement devices, and the interiors of stars.

本文介绍了一种确定半经典等离子体中原子的电子结构和电子碰撞电离过程的相对论方法。该方法采用考虑量子力学和筛选效应的一般两个相互作用带电粒子的有效相互作用伪势来模拟等离子体环境。对具有上述伪势的狄拉克方程进行数值求解,得到了束缚态波函数和连续态波函数。该方法从狄拉克方程出发,因此包括了单电子水平上的相对论效应。其中包括来自Breit相互作用和量子电动力学修正的影响。作为代表性的例子,我们研究了分离和组合的等离子体电子屏蔽效应和等离子体离子屏蔽效应对放置在强耦合半经典等离子体环境中的氢原子的能级离域和电子碰撞电离过程的影响。确定了光谱的性质,如能量、振子强度和与束缚态相对应的相对论能量位移。使用相对论畸变波方法对电子碰撞的电离截面进行了一致而详尽的描述。我们的研究结果表明,与孤立情况下的结果相比,等离子体电子屏蔽效应有助于降低电离势和振荡器强度,同时增加电子冲击电离截面。当包括等离子体离子屏蔽效应时,这些观察到的变化进一步增强,突出了等离子体离子屏蔽效应在这一过程中的重要作用。我们的结果与其他理论数据一致。本研究不仅将相对论畸变波方法扩展到半经典等离子体碰撞过程的分析,并评估等离子体离子屏蔽效应的影响,而且对辐射物理、惯性约束装置和恒星内部具有实际意义。
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引用次数: 0
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International Journal of Quantum Chemistry
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