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Design and Synthesis of New bis-oxindole and Spiro(triazole-oxindole) as CDK4 Inhibitors with Potent Anti-breast Cancer Activity. 设计和合成具有强效抗乳腺癌活性的 CDK4 抑制剂--新型双-吲哚和螺(三唑-吲哚)。
IF 2.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/1573406419666230810124855
Thoraya A Farghaly, Rami A Pashameah, Abrar Bayazeed, Amerah M Al-Soliemy, Amani M R Alsaedi, Marwa F Harras

Background: Since CDKs have been demonstrated to be overexpressed in a wide spectrum of human malignancies, their inhibition has been cited as an effective technique for anticancer drug development.

Methods: In this context, new bis-oxindole/spiro-triazole-oxindole anti-breast cancer drugs with potential CDK4 inhibitory effects were produced in this work. The novel series of bis-oxindole/spirotriazole- oxindole were synthesized from the reaction of bis-oxindole with the aniline derivatives then followed by 1,3-dipolar cycloaddition of hydrazonoyl chloride.

Results: The structure of these bis-oxindole/spiro-triazole-oxindole series was proven based on their spectral analyses. Most bis-oxindole and bis-spiro-triazole-oxindole compounds effectively inhibited the growth of MCF-7 (IC50 = 2.81-17.61 μM) and MDA-MB-231 (IC50 = 3.23-7.98 μM) breast cancer cell lines with low inhibitory activity against normal WI-38 cells. While the reference doxorubicin showed IC50 values of 7.43 μM against MCF-7 and 5.71 μM against the MDA-MB-231 cell line. Additionally, compounds 3b, 3c, 6b, and 6d revealed significant anti-CDK4 activity (IC50 = 0.157- 0.618 μM) compared to palbociclib (IC50 = 0.071 μM). Subsequent mechanistic investigations demonstrated that 3c was able to trigger tumor cell death through the induction of apoptosis. Moreover, it stimulated cancer cell cycle arrest in the G1 phase. Furthermore, western blotting disclosed that the 3c-induced cell cycle arrest may be mediated through p21 upregulation.

Conclusion: According to all of the findings, bis-oxindole 3c shows promise as a cancer treatment targeting CDK4.

背景:由于 CDKs 已被证实在多种人类恶性肿瘤中过度表达,因此抑制 CDKs 被认为是抗癌药物开发的有效技术:方法:在此背景下,本研究制备了具有潜在 CDK4 抑制作用的双吲哚/螺三唑-吲哚抗乳腺癌新药。新的双吲哚/螺环三唑-吲哚系列是由双吲哚与苯胺衍生物反应,然后与肼酰氯进行 1,3- 二极环加成反应合成的:结果:这些双吲哚/螺三唑-吲哚系列的结构已根据其光谱分析得到证实。大多数双-氧化吲哚和双螺三唑-氧化吲哚化合物能有效抑制 MCF-7 (IC50 = 2.81-17.61 μM)和 MDA-MB-231 (IC50 = 3.23-7.98 μM)乳腺癌细胞系的生长,而对正常 WI-38 细胞的抑制活性较低。而参照物多柔比星对 MCF-7 和 MDA-MB-231 细胞株的 IC50 值分别为 7.43 μM 和 5.71 μM。此外,与帕博西尼(IC50 = 0.071 μM)相比,化合物 3b、3c、6b 和 6d 显示出显著的抗 CDK4 活性(IC50 = 0.157- 0.618 μM)。随后的机理研究表明,3c 能够通过诱导细胞凋亡引发肿瘤细胞死亡。此外,它还能刺激癌细胞周期停滞在 G1 期。此外,Western 印迹显示,3c 诱导的细胞周期停滞可能是通过 p21 上调介导的:结论:根据所有研究结果,双氧吲哚 3c 具有靶向 CDK4 治疗癌症的前景。
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引用次数: 0
Synthesis, Antimicrobial Evaluation, and Interaction of Emodin Alkyl Azoles with DNA and HSA. 大黄素烷基唑的合成、抗菌评估以及与 DNA 和 HSA 的相互作用。
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/0115734064283049240124115544
Yu-Hang Zhou, Ying Wang, Hui-Zhen Zhang

Objective: This study aimed to overcome the growing antibiotic resistance. Moreover, the new series of emodin alkyl azoles were synthesized.

Method: The novel emodin alkyl azoles were synthesized using commercial emodin and azoles by alkylation. The NMR and HRMS spectra were employed to confirm the structures of novel prepared compounds. The in vitro antibacterial and antifungal activities of the prepared emodin compounds were studied by the 96-well plate method. The binding behavior between emodin 4-nitro imidazole compound 3c and S. aureus DNA was researched using an ultraviolet-visible spectrophotometer. Furthermore, fluorescence spectrometry was used to explore the interaction with human serum albumin (HSA).

Results: The in vitro antimicrobial results displayed that compound 3c gave relatively strong activities with MIC values of 4-16 μg/mL. Notably, this compound exhibited 2-fold more potent activity against S. aureus (MIC = 4 μg/mL) and E. coli (MIC = 8 μg/mL) strains than clinical drug Chloromycin (MIC = 8 and 16 μg/mL). The UV-vis absorption spectroscopy showed that 4-nitro imidazole emodin 3c could form the 3c-DNA complex by intercalating into S. aureus DNA, inhibiting antimicrobial activities. The simulation results displayed that the emodin 3c and DNA complex were formed by hydrogen bonds. The spectral experiment demonstrated that compound 3c could be transported by human serum albumin (HSA) via hydrogen bonds. The molecular simulation found that the hydroxyl group and the nitroimidazole ring of the emodin compound showed an important role in transportation behavior.

Conclusion: This work may supply useful directions for the exploration of novel antimicrobial agents.

研究目的本研究旨在克服日益增长的抗生素耐药性。此外,还合成了一系列新的大黄素烷基唑:方法:利用商品大黄素和唑类化合物通过烷基化反应合成了新型大黄素烷基唑类化合物。利用核磁共振和 HRMS 图谱确认了所制备的新型化合物的结构。采用 96 孔板法研究了所制备的大黄素化合物的体外抗菌和抗真菌活性。利用紫外可见分光光度计研究了大黄素 4-硝基咪唑化合物 3c 与金黄色葡萄球菌 DNA 的结合行为。此外,还利用荧光光谱法探讨了与人血清白蛋白(HSA)的相互作用:体外抗菌结果表明,化合物 3c 具有相对较强的活性,其 MIC 值为 4-16 µg/mL。值得注意的是,该化合物对金黄色葡萄球菌(MIC = 4 µg/mL)和大肠杆菌(MIC = 8 µg/mL)菌株的活性是临床药物氯霉素(MIC = 8 和 16 µg/mL)的 2 倍。紫外-可见吸收光谱显示,4-硝基咪唑大黄素 3c 可通过插入金黄色葡萄球菌 DNA 形成 3c-DNA 复合物,从而抑制抗菌活性。模拟结果表明,大黄素 3c 与 DNA 复合物是通过氢键形成的。光谱实验表明,大黄素 3c 可通过氢键被人血清白蛋白(HSA)转运。分子模拟发现,大黄素化合物的羟基和硝基咪唑环在运输行为中起着重要作用:结论:这项研究为探索新型抗菌剂提供了有益的方向。
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引用次数: 0
A Review of Antidiabetic Medicinal Plants as a Novel Source of Phosphodiesterase Inhibitors: Future Perspective of New Challenges Against Diabetes Mellitus. 抗糖尿病药用植物作为磷酸二酯酶抑制剂新来源的综述:抗糖尿病新挑战的未来展望》。
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/0115734064255060231116192839
Hayat Ouassou, Nour Elhouda Daoudi, Saliha Bouknana, Rhizlan Abdnim, Mohamed Bnouham

Intracellular glucose concentration plays a crucial role in initiating the molecular secretory process of pancreatic β-cells through multiple messengers and signaling pathways. Cyclic nucleotides are key physiological regulators that modulate pathway interactions in β -cells. An increase of cyclic nucleotides is controled by hydrolysed phosphodiesterases (PDEs), which degrades cyclic nucleotides into inactive metabolites. Despite the undeniable therapeutic potential of PDE inhibitors, they are associated with several side effects. The treatment strategy for diabetes based on PDE inhibitors has been proposed for a long time. Hence, the world of natural antidiabetic medicinal plants represents an ideal source of phosphodiesterase inhibitors as a new strategy for developing novel agents to treat diabetes mellitus. This review highlights medicinal plants traditionally used in the treatment of diabetes mellitus that have been proven to have inhibitory effects on PDE activity. The contents of this review were sourced from electronic databases, including Science Direct, PubMed, Springer Link, Web of Science, Scopus, Wiley Online, Scifinder and Google Scholar. These databases were consulted to collect information without any limitation date. After comprehensive literature screening, this paper identified 27 medicinal plants that have been reported to exhibit anti-phosphodiesterase activities. The selection of these plants was based on their traditional uses in the treatment of diabetes mellitus. The review emphasizes the antiphosphodiesterase properties of 31 bioactive components derived from these plant extracts. Many phenolic compounds have been identified as PDE inhibitors: Brazilin, mesozygin, artonin I, chalcomaracin, norartocarpetin, moracin L, moracin M, moracin C, curcumin, gallic acid, caffeic acid, rutin, quercitrin, quercetin, catechin, kaempferol, chlorogenic acid, and ellagic acid. Moreover, smome lignans have reported as PDE inhibitors: (+)-Medioresinol di-O-β-d-glucopyranoside, (+)- Pinoresinol di-O-β-d-glucopyranoside, (+)-Pinoresinol-4-O-β-d-glucopyranosyl (1→6)-β-dglucopyranoside, Liriodendrin, (+)-Pinoresinol 4'-O-β-d-glucopyranoside, and forsythin. This review provides a promising starting point of medicinal plants, which could be further studied for the development of natural phosphodiesterase inhibitors to treat diabetes mellitus. Therefore, it is important to consider clinical studies for the identification of new targets for the treatment of diabetes.

细胞内葡萄糖浓度通过多种信使和信号通路在启动胰腺β细胞的分子分泌过程中发挥着至关重要的作用。环核苷酸是调节β细胞内通路相互作用的关键生理调节剂。环核苷酸的增加受水解磷酸二酯酶(PDE)的控制,磷酸二酯酶可将环核苷酸降解为无活性的代谢物。尽管磷酸二酯酶抑制剂具有不可否认的治疗潜力,但它们也有一些副作用。基于 PDE 抑制剂的糖尿病治疗策略提出已久。因此,天然抗糖尿病药用植物是磷酸二酯酶抑制剂的理想来源,是开发治疗糖尿病新型药物的新策略。本综述重点介绍了传统上用于治疗糖尿病的药用植物,这些植物已被证实对磷酸二酯酶活性具有抑制作用。本综述的内容来自电子数据库,包括 Science Direct、PubMed、Springer Link、Web of Science、Scopus、Wiley Online、Scifinder 和 Google Scholar。这些数据库的信息收集不受日期限制。经过全面的文献筛选,本文确定了 27 种据报道具有抗磷酸二酯酶活性的药用植物。选择这些植物的依据是它们在治疗糖尿病方面的传统用途。综述强调了从这些植物提取物中提取的 31 种生物活性成分的抗磷酸二酯酶特性。许多酚类化合物已被确认为 PDE 抑制剂:这些酚类化合物包括:巴西苷、中泽苷、青蒿素 I、查尔科马拉辛、去甲斑蝥素、吗拉辛 L、吗拉辛 M、吗拉辛 C、姜黄素、没食子酸、咖啡酸、芦丁、槲皮素、槲皮素、儿茶素、山柰酚、绿原酸和鞣花酸。此外,据报道还有一些木酚素可作为 PDE 抑制剂:(+)-Medioresinol di-O-β-d-glucopyranoside, (+)-Pinoresinol di-O-β-d-glucopyranoside, (+)-Pinoresinol-4-O-β-d-glucopyranosyl (1→6)-β-dglucopyranoside, Liriodendrin, (+)-Pinoresinol 4'-O-β-d-glucopyranoside, 和连翘素。这篇综述为药用植物提供了一个很有前景的起点,可以进一步研究这些植物,以开发治疗糖尿病的天然磷酸二酯酶抑制剂。因此,必须考虑进行临床研究,以确定治疗糖尿病的新靶点。
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引用次数: 0
Biochemical and In Silico Studies on Triazole Derivatives as Tyrosinase Inhibitors: Potential Treatment of Hyperpigmentation Related Skin Disorders. 三唑衍生物作为酪氨酸酶抑制剂的生化和硅学研究:治疗色素沉着相关皮肤疾病的潜力。
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/0115734064271581231219111952
Yusra Choudhary, Atia-Tul-Wahab, Humaira Zafar, Salman Siddiqui, Majid Khan, Khalid M Khan, Amer H Asseri, M Iqbal Choudhary, Atta-Ur-Rahman

Introduction: Tyrosinase is a versatile, glycosylated copper-containing oxidase enzyme that mainly catalyzes the biosynthesis of melanin in mammals. Its overexpression leads to the formation of excess melanin, resulting in hyperpigmentary skin disorders, such as dark spots, melasma, freckles, etc. Therefore, inhibition of tyrosinase is a therapeutic approach for the treatment of hyperpigmentation.

Methods: The current study focused on evaluating tyrosinase inhibitory activities of triazole derivatives 1-20, bearing different substituents on the phenyl ring. 17 derivatives have shown a potent tyrosinase inhibition with IC50 values between 1.6 to 13 μM, as compared to the standard drug, i.e., kojic acid (IC50 = 24.1 ± 0.5 μM). Particularly, compounds 11 and 15 displayed 12 times more potent inhibitory effects than the kojic acid.

Results: The structure-activity relationship revealed that substituting halogens at the C-4 position of the benzene ring renders remarkable anti-tyrosinase activities. Compounds 1-3 and 8 showed a competitive type of inhibition, while compounds 5, 11, and 15 showed a non-competitive mode of inhibition. Next, we performed molecular docking analyses to study the binding modes and interactions between the ligands (inhibitors) and the active site of the tyrosinase enzyme (receptor). Besides this, we have assessed the toxicity profile of inhibitors on the BJ human fibroblast cell line.

Conclusion: The majority of the newly identified tyrosinase inhibitors were found to be noncytotoxic. The results presented herein form the basis of further studies on triazole derivatives as potential drug leads against tyrosinase-related diseases.

简介:酪氨酸酶是一种多功能的糖基化含铜氧化酶,主要催化哺乳动物体内黑色素的生物合成。它的过度表达会导致过量黑色素的形成,从而引起色素沉着性皮肤病,如黑斑、黄褐斑、雀斑等。因此,抑制酪氨酸酶是治疗色素沉着的一种治疗方法:本研究重点评估了在苯环上具有不同取代基的三唑衍生物 1-20 的酪氨酸酶抑制活性。与标准药物曲酸(IC50 = 24.1 ± 0.5 μM)相比,17 种衍生物对酪氨酸酶具有强效抑制作用,IC50 值在 1.6 至 13 μM 之间。其中,化合物 11 和 15 的抑制效果是曲酸的 12 倍:结果:结构-活性关系表明,在苯环的 C-4 位上取代卤素具有显著的抗酪氨酸酶活性。化合物 1-3 和 8 显示出竞争型抑制作用,而化合物 5、11 和 15 显示出非竞争型抑制作用。接下来,我们进行了分子对接分析,研究配体(抑制剂)与酪氨酸酶活性位点(受体)之间的结合模式和相互作用。此外,我们还评估了抑制剂对 BJ 人成纤维细胞系的毒性:结论:大多数新发现的酪氨酸酶抑制剂都是无毒的。本文介绍的结果为进一步研究三唑衍生物作为治疗酪氨酸酶相关疾病的潜在药物线索奠定了基础。
{"title":"Biochemical and <i>In Silico</i> Studies on Triazole Derivatives as Tyrosinase Inhibitors: Potential Treatment of Hyperpigmentation Related Skin Disorders.","authors":"Yusra Choudhary, Atia-Tul-Wahab, Humaira Zafar, Salman Siddiqui, Majid Khan, Khalid M Khan, Amer H Asseri, M Iqbal Choudhary, Atta-Ur-Rahman","doi":"10.2174/0115734064271581231219111952","DOIUrl":"10.2174/0115734064271581231219111952","url":null,"abstract":"<p><strong>Introduction: </strong>Tyrosinase is a versatile, glycosylated copper-containing oxidase enzyme that mainly catalyzes the biosynthesis of melanin in mammals. Its overexpression leads to the formation of excess melanin, resulting in hyperpigmentary skin disorders, such as dark spots, melasma, freckles, etc. Therefore, inhibition of tyrosinase is a therapeutic approach for the treatment of hyperpigmentation.</p><p><strong>Methods: </strong>The current study focused on evaluating tyrosinase inhibitory activities of triazole derivatives 1-20, bearing different substituents on the phenyl ring. 17 derivatives have shown a potent tyrosinase inhibition with IC<sub>50</sub> values between 1.6 to 13 μM, as compared to the standard drug, i.e., kojic acid (IC<sub>50</sub> = 24.1 ± 0.5 μM). Particularly, compounds 11 and 15 displayed 12 times more potent inhibitory effects than the kojic acid.</p><p><strong>Results: </strong>The structure-activity relationship revealed that substituting halogens at the C-4 position of the benzene ring renders remarkable anti-tyrosinase activities. Compounds 1-3 and 8 showed a competitive type of inhibition, while compounds 5, 11, and 15 showed a non-competitive mode of inhibition. Next, we performed molecular docking analyses to study the binding modes and interactions between the ligands (inhibitors) and the active site of the tyrosinase enzyme (receptor). Besides this, we have assessed the toxicity profile of inhibitors on the BJ human fibroblast cell line.</p><p><strong>Conclusion: </strong>The majority of the newly identified tyrosinase inhibitors were found to be noncytotoxic. The results presented herein form the basis of further studies on triazole derivatives as potential drug leads against tyrosinase-related diseases.</p>","PeriodicalId":18382,"journal":{"name":"Medicinal Chemistry","volume":" ","pages":"397-413"},"PeriodicalIF":1.9,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139996699","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Design and Synthesis of 6-amido-3-carboxypyridazine Derivatives as Potent T3SS Inhibitors of Salmonella enterica Serovar Typhimurium. 6-amido-3-carboxypyridazine Derivatives 作为伤寒沙门氏菌 T3SS 强效抑制剂的设计与合成。
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/0115734064252833231129062005
Zhenyu Li, Zhiyong Liu, Yuemao Shen, Chengwu Shen

Background: Salmonella enterica (S. enterica) serovar Typhimurium, an anaerobic enteric pathogene, could cause human and animal diseases ranging from mild gastroenteritis to whole body serious infections.

Objective: The goal of this paper was to synthesize new 6-amido-3-carboxypyridazine derivatives with different lengths of side chains with the aim of getting potent antibacterial agents.

Methods: Synthesized compounds were analyzed by analytical techniques, such as 1H NMR, 13C NMR spectra, and mass spectrometry. We designed a series of novel 6-amido-3-carboxypyridazines using FA as the lead compound with the scaffold hopping strategy and their inhibitory activity against the effectors of type III secretion system (T3SS) using SDS-PAGE and western blot analysis for two rounds. Also, the preliminary mechanism of action of this series of compounds on T3SS was performed using real-time qPCR.

Results: Nine 6-amido-3-carboxypyridazines was synthesized. The inhibitory activities evaluated showed that compound 2i was the most potent T3SS inhibitor, which demonstrated potent inhibitory activities on the secretion of the T3SS SPI-1 effectors in a dose-dependent manner. The transcription of SPI-1 may be affected by compound 2i through the SicA/InvF regulatory pathway.

Conclusion: The novel synthetic 6-amido-3-carboxypyridazines could act as potent leads for the development of novel antibacterial agents.

背景:肠炎沙门氏菌(S. enterica)是一种厌氧性肠道致病菌,可引起从轻微肠胃炎到全身严重感染的人类和动物疾病:本文旨在合成具有不同长度侧链的新型 6-氨基-3-羧基哒嗪衍生物,以期获得强效抗菌剂:方法:利用 1H NMR、13C NMR 光谱和质谱等分析技术对合成的化合物进行分析。我们以 FA 为先导化合物,采用支架跳转策略设计了一系列新型 6-氨基-3-羧基哒嗪类化合物,并利用 SDS-PAGE 和 Western 印迹分析法对它们对 III 型分泌系统(T3SS)效应因子的抑制活性进行了两轮研究。此外,还利用实时 qPCR 研究了该系列化合物对 T3SS 的初步作用机制:结果:合成了 9 个 6-氨基-3-羧基哒嗪类化合物。抑制活性的评估结果表明,化合物 2i 是最有效的 T3SS 抑制剂,它以剂量依赖的方式对 T3SS SPI-1 效应子的分泌具有强效的抑制活性。有趣的是,化合物 2i 可能通过 SicA/ InvF 调节途径影响 SPI-1 的转录:结论:新合成的 6-氨基-3-羧基哒嗪类化合物可作为开发新型抗菌剂的有效线索。
{"title":"Design and Synthesis of 6-amido-3-carboxypyridazine Derivatives as Potent T3SS Inhibitors of <i>Salmonella enterica</i> Serovar Typhimurium.","authors":"Zhenyu Li, Zhiyong Liu, Yuemao Shen, Chengwu Shen","doi":"10.2174/0115734064252833231129062005","DOIUrl":"10.2174/0115734064252833231129062005","url":null,"abstract":"<p><strong>Background: </strong><i>Salmonella enterica (S. enterica)</i> serovar Typhimurium, an anaerobic enteric pathogene, could cause human and animal diseases ranging from mild gastroenteritis to whole body serious infections.</p><p><strong>Objective: </strong>The goal of this paper was to synthesize new 6-amido-3-carboxypyridazine derivatives with different lengths of side chains with the aim of getting potent antibacterial agents.</p><p><strong>Methods: </strong>Synthesized compounds were analyzed by analytical techniques, such as <sup>1</sup>H NMR, <sup>13</sup>C NMR spectra, and mass spectrometry. We designed a series of novel 6-amido-3-carboxypyridazines using FA as the lead compound with the scaffold hopping strategy and their inhibitory activity against the effectors of type III secretion system (T3SS) using SDS-PAGE and western blot analysis for two rounds. Also, the preliminary mechanism of action of this series of compounds on T3SS was performed using real-time qPCR.</p><p><strong>Results: </strong>Nine 6-amido-3-carboxypyridazines was synthesized. The inhibitory activities evaluated showed that compound 2i was the most potent T3SS inhibitor, which demonstrated potent inhibitory activities on the secretion of the T3SS SPI-1 effectors in a dose-dependent manner. The transcription of SPI-1 may be affected by compound 2i through the <i>SicA/InvF</i> regulatory pathway.</p><p><strong>Conclusion: </strong>The novel synthetic 6-amido-3-carboxypyridazines could act as potent leads for the development of novel antibacterial agents.</p>","PeriodicalId":18382,"journal":{"name":"Medicinal Chemistry","volume":" ","pages":"689-693"},"PeriodicalIF":1.9,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139403588","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Determination of Novel SARS-CoV-2 Inhibitors by Combination of Machine Learning and Molecular Modeling Methods. 结合机器学习和分子建模方法确定新型SARS-CoV-2抑制剂
IF 2.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/0115734064265609231026063624
Ersin Güner, Özgür Özkan, Gözde Yalcin-Ozkat, Süreyya Ölgen

Introduction: Within the scope of the project, this study aimed to find novel inhibitors by combining computational methods. In order to design inhibitors, it was aimed to produce molecules similar to the RdRp inhibitor drug Favipiravir by using the deep learning method.

Methods: For this purpose, a Trained Neural Network (TNN) was used to produce 75 molecules similar to Favipiravir by using Simplified Molecular Input Line Entry System (SMILES) representations. The binding properties of molecules to Viral RNA-dependent RNA polymerase (RdRp) were studied by using molecular docking studies. To confirm the accuracy of this method, compounds were also tested against 3CL protease (3CLpro), which is another important enzyme for the progression of SARS-CoV-2. Compounds having better binding energies and RMSD values than favipiravir were searched with similarity analysis on the ChEMBL drug database in order to find similar structures with RdRp and 3CLpro inhibitory activities.

Results: A similarity search found new 200 potential RdRp and 3CLpro inhibitors structurally similar to produced molecules, and these compounds were again evaluated for their receptor interactions with molecular docking studies. Compounds showed better interaction with RdRp protease than 3CLpro. This result presented that artificial intelligence correctly produced structures similar to favipiravir that act more specifically as RdRp inhibitors. In addition, Lipinski's rules were applied to the molecules that showed the best interaction with RdRp, and 7 compounds were determined to be potential drug candidates. Among these compounds, a Molecular Dynamic simulation study was applied for ChEMBL ID:1193133 to better understand the existence and duration of the compound in the receptor site.

Conclusion: The results confirmed that the ChEMBL ID:1193133 compound showed good Root Mean Square Deviation (RMSD), Root Mean Square Fluctuation (RMSF), hydrogen bonding, and remaining time in the active site; therefore, it was considered that it could be active against the virus. This compound was also tested for antiviral activity, and it was determined that it did not delay viral infection, although it was cytotoxic between 5mg/mL-1.25mg/mL concentrations. However, if other compounds could be tested, it might provide a chance to obtain activity, and compounds should also be tested against the enzymes as well as the other types of viruses.

在项目范围内,本研究旨在结合计算方法寻找新的抑制剂。为了设计抑制剂,目的是利用深度学习方法产生类似于RdRp抑制剂药物Favipiravir的分子。方法:为此,采用简化分子输入线输入系统(SMILES)表示,利用训练神经网络(TNN)生成75个与Favipiravir相似的分子。采用分子对接方法研究了分子与病毒RNA依赖性RNA聚合酶(RdRp)的结合特性。为了证实该方法的准确性,还测试了化合物对3CL蛋白酶(3CLpro)的作用,3CL蛋白酶是SARS-CoV-2进展的另一个重要酶。在ChEMBL药物数据库中进行相似性分析,寻找结合能和RMSD值比favipiravir更好的化合物,寻找与RdRp和3CLpro抑制活性相似的结构。结果:相似性搜索发现了新的200个潜在的RdRp和3CLpro抑制剂,其结构与产生的分子相似,这些化合物再次通过分子对接研究评估其受体相互作用。化合物与RdRp蛋白酶的相互作用优于3CLpro。这一结果表明,人工智能正确地产生了类似于favipiravir的结构,更特异性地作为RdRp抑制剂。此外,将Lipinski规则应用于与RdRp相互作用最好的分子,确定了7种化合物作为潜在的候选药物。其中,我们对ChEMBL ID:1193133进行了分子动力学模拟研究,以更好地了解该化合物在受体位点的存在和持续时间。结论:化合物ChEMBL ID:1193133具有良好的均方根偏差(RMSD)、均方根波动(RMSF)、氢键和活性位点剩余时间;因此,人们认为它可能对病毒有活性。该化合物还进行了抗病毒活性测试,并确定它不能延缓病毒感染,尽管它在5mg/mL-1.25mg/mL浓度之间具有细胞毒性。然而,如果可以测试其他化合物,它可能提供一个获得活性的机会,并且化合物也应该针对酶和其他类型的病毒进行测试。
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引用次数: 0
An Overview of Various Rifampicin Analogs against Mycobacterium tuberculosis and their Drug Interactions. 抗结核分枝杆菌的各种利福平类似物及其药物相互作用综述。
IF 2.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/0115734064260853230926080134
Mohammad Asif, Naeem F Qusty, Saad Alghamdi

The success of the TB control program is hampered by the major issue of drug-resistant tuberculosis (DR-TB). The situation has undoubtedly been made more difficult by the widespread and multidrug-resistant (XDR) strains of TB. The modification of existing anti-TB medications to produce derivatives that can function on resistant TB bacilli is one of the potential techniques to overcome drug resistance affordably and straightforwardly. In comparison to novel pharmaceuticals for drug research and progress, these may have a better half-life and greater bioavailability, be more efficient, and serve as inexpensive alternatives. Mycobacterium tuberculosis, which is drugsusceptible or drug-resistant, is effectively treated by several already prescribed medications and their derivatives. Due to this, the current review attempts to give a brief overview of the rifampicin derivatives that can overcome the parent drug's resistance and could, hence, act as useful substitutes. It has been found that one-third of the global population is affected by M. tuberculosis. The most common cause of infection-related death can range from latent TB to TB illness. Antibiotics in the rifamycin class, including rifampicin or rifampin (RIF), rifapentine (RPT), and others, have a special sterilizing effect on M. tuberculosis. We examine research focused on evaluating the safety, effectiveness, pharmacokinetics, pharmacodynamics, risk of medication interactions, and other characteristics of RIF analogs. Drug interactions are especially difficult with RIF because it must be taken every day for four months to treat latent TB infection. RIF continues to be the gold standard of treatment for drug-sensitive TB illness. RIF's safety profile is well known, and the two medicines' adverse reactions have varying degrees of frequency. The authorized once-weekly RPT regimen is insufficient, but greater dosages of either medication may reduce the amount of time needed to treat TB effectively.

结核病控制计划的成功受到耐药结核病(DR-TB)这一主要问题的阻碍。毫无疑问,结核病的广泛耐药菌株使情况变得更加困难。对现有的抗结核药物进行改造,生产出能够对耐药结核杆菌发挥作用的衍生物,是以负担得起的方式直接克服耐药性的潜在技术之一。与用于药物研究和进展的新药相比,这些药物可能具有更好的半衰期和更高的生物利用度,更有效,并可作为廉价的替代品。结核分枝杆菌对药物敏感或耐药,可以通过几种已经开出的药物及其衍生物进行有效治疗。因此,目前的综述试图简要概述利福平衍生物,这些衍生物可以克服母体药物的耐药性,因此可以作为有用的替代品。研究发现,全球三分之一的人口受到结核分枝杆菌的影响。与感染相关的死亡最常见的原因包括潜伏性结核病和结核病。利福霉素类抗生素,包括利福平或利福平(RIF)、利福喷丁(RPT)等,对结核分枝杆菌具有特殊的杀菌作用。我们检查了专注于评估RIF类似物的安全性、有效性、药代动力学、药效学、药物相互作用风险和其他特征的研究。RIF的药物相互作用尤其困难,因为它必须在四个月内每天服用才能治疗潜伏性结核病感染。RIF仍然是治疗药物敏感结核病的黄金标准。RIF的安全性是众所周知的,这两种药物的不良反应频率不同。授权的每周一次RPT方案是不够的,但更大剂量的任何一种药物都可能减少有效治疗结核病所需的时间。
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引用次数: 0
Diverse Pharmacological Potential of Pyridazine Analogs against Various Diseases. 哒嗪类似物对各种疾病的不同药理潜力
IF 2.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/1573406419666230913102835
Ahad Amer Alsaiari, Mazen M Almehmadi, Mohammad Asif

Pyridazinone analogs possess diverse types of pharmacological activities, such as anticancer, antimicrobial, anticonvulsant, analgesic, anti-inflammatory, antioxidant, antihypertensive, antisecretory, antiulcer, and other useful pharmacological activities. They also possess cyclooxygenase (COX) inhibitors, dipeptidyl peptidase inhibitors, phosphodiesterase inhibitors, glutamate transporter activators, adenosine receptor antagonists, serotonin receptors antagonists, lipooxygenase, cholinesterase, vasodilator, and anesthetics. Pyridazine rings are the essential structure for some marketed drugs, such as pimobendan, levosimendan as a cardiotonic drug, and emorfozan as an analgesic and anti-inflammatory (Non-steroidal anti-inflammatory drug) agent. So, researchers all over the world have paid attention to synthesizing various pyridazinone compounds mainly due to the ease of design and synthesis of different analogs and variables in the pharmacological responses. This review article focuses on the pharmacological activities of different pyridazine analogs.

哒嗪酮类似物具有多种药理活性,如抗癌、抗菌、抗惊厥、镇痛、抗炎、抗氧化、抗高血压、抗抑郁、抗溃疡以及其他有用的药理活性。它们还具有环氧化酶(COX)抑制剂、二肽基肽酶抑制剂、磷酸二酯酶抑制剂、谷氨酸转运体激活剂、腺苷受体拮抗剂、5-羟色胺受体拮抗剂、脂肪氧化酶、胆碱酯酶、血管扩张剂和麻醉剂的作用。哒嗪环是一些已上市药物的基本结构,如匹莫苯丹(pimobendan)、强心药左西孟旦(levosimendan)和镇痛消炎药(非甾体抗炎药)依莫福赞(emorfozan)。因此,全世界的研究人员都在关注各种哒嗪酮化合物的合成,这主要是因为不同类似物的设计和合成非常容易,而且药理反应也存在变数。这篇综述文章主要探讨了不同哒嗪类似物的药理活性。
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引用次数: 0
Antibacterial Evaluation of Gallic Acid and its Derivatives against a Panel of Multi-drug Resistant Bacteria. 没食子酸及其衍生物对耐多药细菌的抗菌评估
IF 2.3 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/1573406419666230823104300
Mohamed Abdella, Chandrajit Lahiri, Iskandar Abdullah, Ayaz Anwar

Background: Infectious diseases are the second leading cause of deaths worldwide. Pathogenic bacteria have been developing tremendous resistance against antibiotics which has placed an additional burden on healthcare systems. Gallic acid belongs to a naturally occurring phenolic class of compounds and is known to possess a wide spectrum of antimicrobial activities.

Aims & objectives: In this study, we synthesized thirteen derivatives of gallic acid and evaluated their antibacterial potential against seven multi-drug resistant bacteria, as well as cytotoxic effects against human embryonic kidney cell line in vitro. Methods: 13 compounds were successfully synthesized with moderate to good yield and evaluated. Synthesized derivatives were characterized by using nuclear magnetic resonance spectroscopy, mass spectrometry, and Fourier transformation infrared spectroscopy. Antibacterial activity was determined using microdilution while cytotoxicyt was assessed using MTT assay.

Results: The results of antibacterial assay showed that seven out of thirteen compounds exhibited antibacterial effects with compound 6 and 13 being most potent against Staphylococcus aureus (MIC 56 μg/mL) and Salmonella enterica (MIC 475 μg/mL) respectively. On the other hand, most of these compounds showed lower cytotoxicity against human embryonic kidney cells (HEK 293), with IC50 values ranging from over 700 μg/mL.

Conclusion: Notably, compound 13 was found to be non-toxic at concentrations as high as 5000 μg/mL. These findings suggest that the present synthetic derivatives of gallic acid hold potential for further studies in the development of potent antibacterial agents.

背景:传染病是全球第二大死因。病原菌对抗生素产生了巨大的抗药性,这给医疗系统带来了额外的负担。没食子酸属于天然酚类化合物,具有广泛的抗菌活性:在这项研究中,我们合成了十三种没食子酸衍生物,并在体外评估了它们对七种多重耐药细菌的抗菌潜力以及对人类胚胎肾细胞系的细胞毒性作用。方法:成功合成了 13 种化合物,并对其进行了评估。利用核磁共振光谱、质谱和傅立叶变换红外光谱对合成的衍生物进行了表征。抗菌活性采用微量稀释法测定,细胞毒性采用 MTT 法评估:抗菌试验结果表明,13 种化合物中有 7 种具有抗菌效果,其中化合物 6 和 13 对金黄色葡萄球菌(MIC 为 56 μg/mL)和肠炎沙门氏菌(MIC 为 475 μg/mL)的抗菌效果最强。另一方面,大多数化合物对人类胚胎肾细胞(HEK 293)的细胞毒性较低,IC50 值在 700 μg/mL 以上:值得注意的是,化合物 13 在浓度高达 5000 μg/mL 时也无毒性。这些发现表明,目前的没食子酸合成衍生物具有进一步研究开发强效抗菌剂的潜力。
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引用次数: 0
Synthesis and Biological Evaluation of Amino Acid and Peptide Conjugates of 5-Bromovaleric Acid. 5-Bromovaleric Acid 的氨基酸和肽共轭物的合成与生物学评价。
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2024-01-01 DOI: 10.2174/0115734064302733240621054643
Saurav Kumar, Harpreet Kaur, Sahil Kumar, Nitin Verma, Rajesh Kumar Singh

Background: Among various carboxylic acid derivatives, valeric acid or pentanoic acid is found to be widely distributed in nature. It is a straight-chain alkyl carboxylic acid containing five carbon atoms. Due to the therapeutic value of valeric acid, it is used as a versatile nucleus in the pharmaceutical field. Valeric acid derivatives are associated with a broad spectrum of biological activities, like anticonvulsant, antiplatelet, antidiabetic, and plant growth activities.

Aim: It has previously been revealed that peptide derivatives of carboxylic acids are accountable for enhanced antimicrobial activity. Therefore, it was hypothesized that coupling peptides with valeric acid would increase the antimicrobial properties of the target compounds. So, the objective of the present study was to synthesize peptide derivatives of 5-bromovaleric acid and evaluate their antibacterial and antifungal activities.

Methods: 5-bromovaleric acid was synthesized by the reaction of cyclopentanone and hydrogen peroxide in the presence of copper bromide and sodium bromide. Additionally, 5-bromovaleric acid was coupled with amino acid methyl esters, dipeptides, tripeptides, and tetrapeptides in the presence of dicyclohexylcarbodimide (DCC) and N-methylmorpholine (NMM) as a base under continuous stirring for 36 hours to produce its peptide derivatives.

Results: The results obtained showed that 5-bromovaleric acid possesses more potent antibacterial activity than N-terminal 5-bromovaleric acid conjugates of selected di-, tri, and tetra peptide Cterminal methyl esters against ciprofloxacin as a standard. The selected dipeptide and tripeptide Nterminal 5-bromovaleric acid-conjugated C-terminal methyl ester derivatives were more active than the selected tetrapeptide methyl ester analogue. Using fluconazole as a reference, the antifungal efficacy of 5-bromovaleric acid against C. albicans and A. niger declined as it was combined with C-terminal methyl esters of selected dipeptides, tripeptides, and tetrapeptides.

Conclusion: The novel selected peptide derivatives had less antibacterial and antifungal action than the parent 5-bromovaleric acid. Antibacterial and antifungal investigations showed that 5- bromopentanoic acid peptide derivatives might impair antimicrobial efficacy. Further, attaching 5- bromopentanoic acid to di, tri, and tetra peptides did not boost their antibacterial potential.

背景:在各种羧酸衍生物中,戊酸或戊酸被发现广泛分布于自然界中。它是一种含有五个碳原子的直链烷基羧酸。由于戊酸的治疗价值,它在制药领域被用作一种用途广泛的核。Valeric acid 衍生物具有广泛的生物活性,如抗惊厥、抗血小板、抗糖尿病和植物生长活性。因此,我们假设将肽与戊酸偶联会增强目标化合物的抗菌特性。因此,本研究的目的是合成 5-溴戊酸的肽衍生物,并评估其抗菌和抗真菌活性。方法:5-溴戊酸是由环戊酮和过氧化氢在溴化铜和溴化钠存在下反应合成的。此外,5-溴戊酸与氨基酸甲酯、二肽、三肽和四肽在二环己基碳二亚胺(DCC)和 N-甲基吗啉(NMM)作为碱的存在下,在持续搅拌下偶联 36 小时,生成其肽衍生物:结果表明,5-溴戊酸与选定的二肽、三肽和四肽 Cterminal 甲基酯的 N 端共轭物相比,具有更强的抗菌活性。与选定的四肽甲酯类似物相比,选定的二肽和三肽 Nterminal 5-溴戊酸共轭 Cterminal 甲酯衍生物的活性更高。以氟康唑为参照物,当 5-溴戊酸与所选二肽、三肽和四肽的 C-末端甲酯结合时,5-溴戊酸对白僵菌和黑僵菌的抗真菌效力下降:结论:与母体 5-溴戊酸相比,所选的新型肽衍生物的抗菌和抗真菌作用较弱。抗菌和抗真菌研究表明,5-溴戊酸肽衍生物可能会影响抗菌效果。此外,将 5-溴戊酸附加到二肽、三肽和四肽上并不能提高它们的抗菌潜力。
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引用次数: 0
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Medicinal Chemistry
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