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Synthesis, Characterization, and In Vitro and In Silico Studies of New Triazole Derivatives as Aromatase Inhibitors. 新型三唑类芳香酶抑制剂的合成、表征及体外和硅内研究。
IF 2.6 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115734064316112240722092935
Zeynep Livanur Uzmez, Derya Osmaniye, Yusuf Ozkay, Zafer Asım Kaplancıklı

Introduction: Breast cancer is the most common type of cancer among women. Steroidal or non-steroidal aromatase inhibitors (NSAIs) are used clinically, and in most cancer diseases, resistance is the most important problem.

Methods: The nitrogenous heterocyclic ring is noteworthy in the structure of non-steroidal aromatase inhibitors. This is the pharmacophore structure for aromatase inhibition. Because the enzyme interacts with the Fe2+ cation of the HEM structure in its active site, the most used agents in the clinic, such as anastrozole and letrozole, contain triazoles in their structures. Within the scope of this study, hybrid compounds containing both imidazole and triazole were synthesized.

Results: The synthesis was carried out by a 4-step reaction. The anticancer effects of the compounds were evaluated by MTT assay performed on A549 and MCF-7 cancer cells. Compound 4d showed anticancer activity against the MCF-7 cell line with IC50=6.7342 uM value. This compound exhibited anticancer activity against the A549 cell line with an IC50 = 17.1761 μM. In the MTT test performed on a healthy cell line to determine the cytotoxic effects of the compounds, the compound showed activity with a value of 4d IC50=13.2088 uM. This indicates that the compound is not cytotoxic. Additionally, BrdU analysis was performed to evaluate whether the compound inhibits DNA synthesis. These selective effects of the compounds on breast cancer strengthened their aromatase enzyme inhibitor potential. For this reason, experiments conducted with both in vitro and in silico methods revealed a compound with high aromatase inhibitor potential.

Conclusion: The interactions observed as a result of molecular docking and dynamics studies are in harmony with activity studies. In particular, interactions with HEM600 demonstrate the activity potential of the compound.

乳腺癌是女性中最常见的癌症类型。甾体或非甾体芳香化酶抑制剂(NSAIs)在临床上使用,在大多数癌症疾病中,耐药性是最重要的问题。方法:非甾体芳香化酶抑制剂的结构中含有氮杂环。这是芳香酶抑制的药效团结构。由于酶在其活性位点与HEM结构的Fe2+阳离子相互作用,因此临床上使用最多的药物,如阿那曲唑和来曲唑,在其结构中含有三唑。在本研究范围内,合成了同时含有咪唑和三唑的杂化化合物。结果:合成过程为4步反应。采用MTT法对A549和MCF-7癌细胞进行抑癌实验。化合物4d对MCF-7细胞株具有抗肿瘤活性,IC50=6.7342 uM。该化合物对A549细胞株具有抗肿瘤活性,IC50值为17.1761 μM。在健康细胞系上进行MTT试验以确定化合物的细胞毒性作用,化合物的活性值为4d IC50=13.2088 uM。这表明该化合物没有细胞毒性。此外,进行BrdU分析以评估该化合物是否抑制DNA合成。这些化合物对乳腺癌的选择性作用增强了其芳香酶抑制剂的潜力。因此,通过体外和硅法进行的实验揭示了一种具有高芳香酶抑制剂潜力的化合物。结论:通过分子对接和动力学研究观察到的相互作用与活性研究是一致的。特别是,与HEM600的相互作用证明了该化合物的活性潜力。
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引用次数: 0
Synthesis, Pharmacological Activities, Structure-activity Relationship of 1,3,4-Oxadiazole-Piperazine Conjugates: A Review. 1,3,4-恶二唑-哌嗪缀合物的合成、药理活性及构效关系综述
IF 2.6 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115734064332210241122062159
Upasana Sharma, Rajnish Kumar, Avijit Mazumder, Salahuddin, Pankaj Kumar Tyagi, Saurabh Singh

The conjugation of heterocyclic compounds often aims to leverage the beneficial properties of multiple compounds, which ultimately motivate the researchers to develop novel medicines with better efficacy, affinity, modified selectivity, dual/various modes of action, reduced side effects, lower cost, or enhanced therapeutic profiles. Hybrid molecules or conjugates for synergistic effect are obtained by combining structural features of two differently active fragments. Due to 1,3,4-oxadiazole's alternating single and double bonds, each atom providing a porbital perpendicular to the molecule's plane is stabilized like a drug molecule. The conjugate of 1,3,4-oxadiazole with piperazine moiety exhibits a range of physiological effects such as lowering blood pressure, antimicrobial, antitubercular, antioxidant, anticancer, antiproliferative, etc. Numerous natural molecules with pharmacological importance have also been found to possess conjugation between piperazine and 1,3,4-oxadiazole. As there is a lack of studies that focused on the synthetic protocols, pharmacological potential, and structure-activity relationship of the conjugates of 1,3,4-oxadiazoles and piperazines, the presented article highlights specifically these dimensions which have been reported in the last 10 years (2014-2024) These details assist researchers in designing their studies, and it is hoped that researchers from various scientific fields will find the manuscript beneficial for their future work on the conjugates of 1,3,4-oxadiazoles and piperazine.

杂环化合物的偶联通常旨在利用多种化合物的有益特性,这最终促使研究人员开发出具有更好疗效、亲和力、修饰选择性、双重/多种作用模式、减少副作用、降低成本或增强治疗效果的新药物。通过结合两个不同活性片段的结构特征,得到具有协同作用的杂化分子或共轭物。由于1,3,4-恶二唑的单键和双键交替,每个提供垂直于分子平面的轨道的原子都像药物分子一样稳定。1,3,4-恶二唑与哌嗪部分的偶联物具有一系列生理作用,如降血压、抗菌、抗结核、抗氧化、抗癌、抗增殖等。许多具有药理意义的天然分子也被发现在哌嗪和1,3,4-恶二唑之间具有偶联。由于缺乏对1,3,4-恶二唑和哌嗪缀合物的合成方案、药理潜力和构效关系的研究,本文特别强调了过去10年(2014-2024)报道的这些维度,这些细节有助于研究人员设计他们的研究。希望本文对今后研究1,3,4-恶二唑与哌嗪缀合物的工作有所帮助。
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引用次数: 0
Marine-Derived Compound Targeting mTOR and FGFR-2: A Promising Strategy for Breast, Lung, and Colorectal Cancer Therapy. 靶向mTOR和FGFR-2的海洋衍生化合物:乳腺癌,肺癌和结直肠癌治疗的有希望的策略
IF 2.6 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115734064346419241104110015
Vijay Murali Ravi Mythili, K Kumaran, Sayantani Chattopadhyay, Shahjahan Ahmad Basha, Sruthi Sekar, Sowmya Senthil, D Prabhu, Kirubakaran Rangasamy, K N ArulJothi

Introduction: The marine habitat is a plentiful source of diverse, active compounds that are extensively utilised for their medicinal properties. Pharmaceutical trends have currently changed towards utilising a diverse range of goods derived from the marine environment.

Methods: This study aimed to examine the inhibitory effects of bioactive chemicals derived from marine algae and bacteria. The identification of these compounds was carried out through the process of Gas Chromatography-Mass Spectrometry (GC-MS) profiling. Subsequently, these compounds were subjected to docking simulations against a specific set of target proteins that are known to be frequently overexpressed in three distinct types of cancer.

Results: From the docking results, the ligand 1,4:3,6:5,7-Tribenzal-beta-mannoheptitol was found to be effective against the proteins mTOR (PDB ID: 4JSV) and FGFR2 (PDB ID:6V6Q). The findings of molecular simulation highlight that the investigated compound gets integrated with the target proteins effectively.

Conclusion: These marine derived compounds hold significant potential for further development and exploration in the field of cancer therapeutics.

海洋栖息地是各种活性化合物的丰富来源,这些活性化合物因其药用特性而被广泛利用。目前的制药趋势已转变为利用来自海洋环境的各种商品。方法:研究从海藻和细菌中提取的生物活性物质的抑菌作用。这些化合物的鉴定是通过气相色谱-质谱(GC-MS)分析过程进行的。随后,这些化合物与一组特定的靶蛋白进行对接模拟,这些靶蛋白已知在三种不同类型的癌症中经常过表达。结果:对接结果发现,配体1,4:3,6:5,7-三苯- β -甘露庚醇对mTOR蛋白(PDB ID: 4JSV)和FGFR2蛋白(PDB ID:6V6Q)有效。这项研究的结果强调了所研究的工具所提供的显著优势,它有效地提高了对接过程的效率。结论:这些化合物在癌症治疗领域具有进一步开发和探索的潜力。
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引用次数: 0
Application of Iodine-Amine Oxidation Approach in the Synthesis of Various N-Alkyl Phosphoramidate Oligonucleotide Derivatives. 碘-氨氧化法在合成各种 N-烷基磷酰胺寡核苷酸衍生物中的应用。
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115734064325532241002105426
Mikhail D Nekrasov, Dmitrii V Pyshnyi, Maxim S Kupryushkin

Introduction: Nowadays, use of phosphate modifications in oligonucleotide backbone has become a common approach for imbuing its structure with the desired beneficial properties. The recent advances in successful application of different classes of phosphate modifications in the design of therapeutic oligonucleotides have led to a renewed interest in the development of approaches for introducing diverse classes of phosphate modifications.

Methods: This study aims to investigate the efficiency and optimize protocols for the application of the iodine-amine oxidation reaction to produce various N-alkyl phosphoramidate oligonucleotide derivatives during the conventional solid-phase phosphoramidite synthesis method.

Results: Various solvents and drying reagents were tested, and it was evaluated that even minor traces of water in a reaction mixture had a significant impact on yield. Using set of commercially available amines, it was shown that steric accessibility is a more critical parameter than nucleophilicity of the amino group in oxidative amination reaction. It was demonstrated that through use of amino alcohols and diamines during iodine-amine oxidation step various branched oligonucleotide structures can be synthesized.

Conclusion: The obtained data indicates that the oxidative amination approach can be a promising tool for preparing various oligonucleotide derivatives during solid-phase synthesis without the use of specialized phosphoramidite monomers.

目前,在寡核苷酸主链中使用磷酸盐修饰已成为使其结构具有所需有益性质的常用方法。最近在治疗性寡核苷酸设计中成功应用不同类型的磷酸盐修饰的进展导致了对引入不同类型磷酸盐修饰的方法的发展的新兴趣。方法:研究在常规固相合成酰胺磷的过程中,利用碘胺氧化反应制备多种n -烷基酰胺磷寡核苷酸衍生物的效率和优化工艺。结果:测试了各种溶剂和干燥试剂,并评估了反应混合物中即使微量的水也会对收率产生重大影响。利用一组市售胺,证明了在氧化胺化反应中,氨基的空间可及性比亲核性更重要。结果表明,在碘胺氧化过程中,利用氨基醇和二胺可以合成多种支链寡核苷酸结构。结论:氧化胺化法是一种很有前途的工具,可以在固相合成过程中制备各种寡核苷酸衍生物,而无需使用专门的酰胺磷酸单体。
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引用次数: 0
Exploring Cannabis sativa L for Anti-Alzheimer Potential: An Extensive Computational Study including Molecular Docking, Molecular Dynamics, and ADMET Assessments. 探索大麻L抗阿尔茨海默病的潜力:包括分子对接,分子动力学和ADMET评估的广泛计算研究。
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115734064318657240822064240
Hassan Nour, Imane Yamari, Oussama Abchir, Nouh Mounadi, Abdelouahid Samadi, Salah Belaidi, Samir Chtita

Introduction: Cholinesterase enzymes play a pivotal role in hydrolyzing acetylcholine, a neurotransmitter crucial for memory and cognition, into its components, acetic acid, and choline. A primary approach in addressing Alzheimer's disease symptoms is by inhibiting the action of these enzymes.

Methods: With this context, our study embarked on a mission to pinpoint potential Cholinesterase (ChE) inhibitors using a comprehensive computational methodology. A total of 49 phytoconstituents derived from Cannabis sativa L underwent in silico screening via molecular docking, pharmacokinetic and pharmacotoxicological analysis, to evaluate their ability to inhibit cholinesterase enzymes. Out of these, two specific compounds, namely tetrahydrocannabivarin and Δ-9- tetrahydrocannabinol, belonging to cannabinoids, stood out as prospective therapeutic agents against Alzheimer's due to their potential as cholinesterase inhibitors. These candidates showcased commendable binding affinities with the cholinesterase enzymes, highlighting their interaction with essential enzymatic residues.

Results: They were predicted to exhibit greater binding affinities than Rivastigmine and Galantamine. Their ADMET assessments further classified them as viable oral pharmaceutical drugs. They are not expected to induce any mutagenic or hepatotoxic effects and cannot produce skin sensitization. In addition, these phytoconstituents are predicted to be BBB permeable and can reach the central nervous system (CNS) and exert their therapeutic effects. To delve deeper, we explored molecular dynamics (MD) simulations to examine the stability of the complex formed between the best candidate (Δ-9-tetrahydrocannabinol) and the target proteins under simulated biological conditions. The MD study affirmed that the ligand-ChE recognition is a spontaneous reaction leading to stable complexes.

Conclusion: Our research outcomes provide valuable insights, offering a clear direction for the pharmaceutical sector in the pursuit of effective anti-Alzheimer treatments.

胆碱酯酶在乙酰胆碱水解过程中起关键作用,乙酰胆碱是一种对记忆和认知至关重要的神经递质,其成分为乙酸和胆碱。解决阿尔茨海默病症状的主要方法是抑制这些酶的作用。方法:在这种背景下,我们的研究开始了一项任务,即使用综合计算方法确定潜在的胆碱酯酶(ChE)抑制剂。通过分子对接、药代动力学和药物毒理学分析,对49种大麻植物成分进行了硅筛选,以评价其抑制胆碱酯酶的能力。其中,两种特定的化合物,即四氢大麻素和Δ-9-四氢大麻酚,属于大麻素,由于其作为胆碱酯酶抑制剂的潜力,作为治疗阿尔茨海默氏症的前瞻性药物脱颖而出。这些候选物显示出与胆碱酯酶的良好结合亲和力,突出了它们与必需酶残基的相互作用。结果:预测它们比利瓦斯汀和加兰他明具有更强的结合亲和力。它们的ADMET评估进一步将它们归类为可行的口服药物。它们不会引起任何诱变或肝毒性作用,也不会产生皮肤致敏。此外,这些植物成分被预测为血脑屏障可渗透,可到达中枢神经系统(CNS)并发挥其治疗作用。为了深入研究,我们探索了分子动力学(MD)模拟,以检查在模拟生物条件下最佳候选蛋白(Δ-9-tetrahydrocannabinol)和目标蛋白之间形成的复合物的稳定性。MD研究证实配体- che识别是一个自发反应,导致稳定的配合物。结论:我们的研究结果提供了有价值的见解,为制药行业寻求有效的抗阿尔茨海默病治疗提供了明确的方向。
{"title":"Exploring <i>Cannabis sativa L</i> for Anti-Alzheimer Potential: An Extensive Computational Study including Molecular Docking, Molecular Dynamics, and ADMET Assessments.","authors":"Hassan Nour, Imane Yamari, Oussama Abchir, Nouh Mounadi, Abdelouahid Samadi, Salah Belaidi, Samir Chtita","doi":"10.2174/0115734064318657240822064240","DOIUrl":"https://doi.org/10.2174/0115734064318657240822064240","url":null,"abstract":"<p><strong>Introduction: </strong>Cholinesterase enzymes play a pivotal role in hydrolyzing acetylcholine, a neurotransmitter crucial for memory and cognition, into its components, acetic acid, and choline. A primary approach in addressing Alzheimer's disease symptoms is by inhibiting the action of these enzymes.</p><p><strong>Methods: </strong>With this context, our study embarked on a mission to pinpoint potential Cholinesterase (ChE) inhibitors using a comprehensive computational methodology. A total of 49 phytoconstituents derived from <i>Cannabis sativa L</i> underwent <i>in silico</i> screening via molecular docking, pharmacokinetic and pharmacotoxicological analysis, to evaluate their ability to inhibit cholinesterase enzymes. Out of these, two specific compounds, namely tetrahydrocannabivarin and Δ-9- tetrahydrocannabinol, belonging to cannabinoids, stood out as prospective therapeutic agents against Alzheimer's due to their potential as cholinesterase inhibitors. These candidates showcased commendable binding affinities with the cholinesterase enzymes, highlighting their interaction with essential enzymatic residues.</p><p><strong>Results: </strong>They were predicted to exhibit greater binding affinities than Rivastigmine and Galantamine. Their ADMET assessments further classified them as viable oral pharmaceutical drugs. They are not expected to induce any mutagenic or hepatotoxic effects and cannot produce skin sensitization. In addition, these phytoconstituents are predicted to be BBB permeable and can reach the central nervous system (CNS) and exert their therapeutic effects. To delve deeper, we explored molecular dynamics (MD) simulations to examine the stability of the complex formed between the best candidate (Δ-9-tetrahydrocannabinol) and the target proteins under simulated biological conditions. The MD study affirmed that the ligand-ChE recognition is a spontaneous reaction leading to stable complexes.</p><p><strong>Conclusion: </strong>Our research outcomes provide valuable insights, offering a clear direction for the pharmaceutical sector in the pursuit of effective anti-Alzheimer treatments.</p>","PeriodicalId":18382,"journal":{"name":"Medicinal Chemistry","volume":"21 5","pages":"367-384"},"PeriodicalIF":1.9,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144317310","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Step Towards Development and Bio-evaluation of a Novel Radio-ligand 99mTc-CYX-DTPA Targeting Sigma 2 Receptors. 靶向Sigma 2受体的新型放射配体99mTc-CYX-DTPA的研制与生物评价
IF 2.6 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115734064329861250122113332
Ritika Chaudhary, Shubhra Chaturvedi, Divya Gautam, Vishakha Chaudhary, Deepika Sharma, Presenjit, Aastha Garg, Madhu Chopra, Anil Kumar Mishra

Introduction: Development of theranostics agents targeted towards particular receptors can effectively help in the management of cancer. The overexpression of the sigma-2 receptor (S2R) in tumors establishes it as a prominent biomarker for cancer cells.

Methods: Radiotheranostics rely on the design of specific molecules having versatility in applications of diagnosis and therapy by merely changing the radioisotope. We have designed a novel radiotheranostic S2R-targeted ligand using cyclohexylpiperazine and performed docking studies to narrow down the potential efficacious ligand. The potential molecule with G-score = -7.0 kcal/mol, was then synthesized using a three steps reaction including conjugation of 2-(4- cyclohexylpiperazine-1-yl)ethyl(CYX) with DTPA chelator. Subsequently, the molecule has been radiolabelled with 99mTc using stannous chloride as a reducing agent, and a radiolabellieng efficiency of 95.0 ± 0.59% for 99mTc-CYX-DTPA. As proof of concept, the molecule has been evaluated for its binding affinity and specificity using sigma receptors isolated from the liver membrane homogenates of mice. The binding affinity was found to be Kd = 12.84 ± 0.395 nM; Bmax = 0.5258 ± 0.001 fmol/mg, indicating a high affinity for the receptors.

Results: In addition, the molecule was also assessed for biocompatibility using haemolysis analysis and cytotoxicity on HEK cells and MDA-MB-23, wherein the molecule showed no significant cytotoxicity up to 72 h on HEK cells and 32.42% cytotoxicity on MDA-MB-231 cells.

Conclusion: The future work will concentrate on the demonstration of in vivo targeting and sitespecific accumulation of the molecule along with its suitability for theranostics applications.

导读:针对特定受体的治疗药物的开发可以有效地帮助癌症的管理。肿瘤中sigma-2受体(S2R)的过表达使其成为癌细胞的重要生物标志物。方法:放射治疗依赖于特定分子的设计,通过改变放射性同位素在诊断和治疗中的应用具有通用性。我们使用环己基哌嗪设计了一种新的放射治疗s2r靶向配体,并进行对接研究以缩小潜在有效配体的范围。然后用2-(4-环己基哌嗪-1-基)乙基(CYX)与DTPA螯合剂偶联三步反应合成了G-score = -7.0 kcal/mol的势分子。随后,用氯化亚锡作为还原剂用99mTc对该分子进行放射性标记,99mTc- cyx - dtpa的放射性标记效率为95.0±0.59%。作为概念的证明,该分子已经通过从小鼠肝膜匀浆中分离的sigma受体来评估其结合亲和力和特异性。结合亲和力Kd = 12.84±0.395 nM;Bmax = 0.5258±0.001 fmol/mg,对受体有较高亲和力。结果:此外,还通过溶血分析和对HEK细胞和MDA-MB-23的细胞毒性评估了该分子的生物相容性,其中该分子对HEK细胞的细胞毒性长达72 h,对MDA-MB-231细胞的细胞毒性为32.42%。结论:未来的工作将集中在证明分子的体内靶向性和位点特异性积累以及其治疗应用的适用性上。
{"title":"A Step Towards Development and Bio-evaluation of a Novel Radio-ligand <sup>99m</sup>Tc-CYX-DTPA Targeting Sigma 2 Receptors.","authors":"Ritika Chaudhary, Shubhra Chaturvedi, Divya Gautam, Vishakha Chaudhary, Deepika Sharma, Presenjit, Aastha Garg, Madhu Chopra, Anil Kumar Mishra","doi":"10.2174/0115734064329861250122113332","DOIUrl":"https://doi.org/10.2174/0115734064329861250122113332","url":null,"abstract":"<p><strong>Introduction: </strong>Development of theranostics agents targeted towards particular receptors can effectively help in the management of cancer. The overexpression of the sigma-2 receptor (S2R) in tumors establishes it as a prominent biomarker for cancer cells.</p><p><strong>Methods: </strong>Radiotheranostics rely on the design of specific molecules having versatility in applications of diagnosis and therapy by merely changing the radioisotope. We have designed a novel radiotheranostic S2R-targeted ligand using cyclohexylpiperazine and performed docking studies to narrow down the potential efficacious ligand. The potential molecule with G-score = -7.0 kcal/mol, was then synthesized using a three steps reaction including conjugation of 2-(4- cyclohexylpiperazine-1-yl)ethyl(CYX) with DTPA chelator. Subsequently, the molecule has been radiolabelled with <sup>99m</sup>Tc using stannous chloride as a reducing agent, and a radiolabellieng efficiency of 95.0 ± 0.59% for <sup>99m</sup>Tc-CYX-DTPA. As proof of concept, the molecule has been evaluated for its binding affinity and specificity using sigma receptors isolated from the liver membrane homogenates of mice. The binding affinity was found to be K<sub>d</sub> = 12.84 ± 0.395 nM; B<sub>max</sub> = 0.5258 ± 0.001 fmol/mg, indicating a high affinity for the receptors.</p><p><strong>Results: </strong>In addition, the molecule was also assessed for biocompatibility using haemolysis analysis and cytotoxicity on HEK cells and MDA-MB-23, wherein the molecule showed no significant cytotoxicity up to 72 h on HEK cells and 32.42% cytotoxicity on MDA-MB-231 cells.</p><p><strong>Conclusion: </strong>The future work will concentrate on the demonstration of <i>in vivo</i> targeting and sitespecific accumulation of the molecule along with its suitability for theranostics applications.</p>","PeriodicalId":18382,"journal":{"name":"Medicinal Chemistry","volume":"21 6","pages":"582-593"},"PeriodicalIF":2.6,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145149491","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
De novo Drug Design and Repurposing to Suppress Liver Cancer via VEGF-R1 Mechanism: Comprehensive Molecular Docking, Molecular Dynamics Simulations and ADME Estimation. 通过VEGF-R1机制抑制肝癌的新药物设计和再利用:综合分子对接,分子动力学模拟和ADME估计。
IF 2.6 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115734064333811240928105309
Soykan Agar
<p><strong>Aim: </strong>The aim is to halt the progression of liver cancer (Hepatocellular carcinoma) by suppressing the VEGF-R1 receptor using Myricetin and its <i>de novo</i>-designed analogues.</p><p><strong>Background: </strong>VEGF/VEGFR autocrine signalling promotes the growth, progression, and metastasis of Hepatocellular carcinoma, making the development of molecularly targeted therapies highly feasible. Invasive and metastatic behaviours in various cancers, including hepatocellular carcinoma (HCC), are closely monitored through the use of VEGF signalling pathway inhibitors. Specifically in HCC, VEGFR-1 facilitates the invasive capabilities of cancer cells primarily by triggering the epithelial-mesenchymal transition (EMT) process. VEGFR-1 significantly influences the activity of proteolytic enzymes that are critical for the invasive behaviour of HCC cells. Notably, a novel mechanism has been discovered where VEGFR-1 activation leads to the upregulation of MMP-9, thereby enhancing the invasiveness of HCC cells. The scientists, in their study, have elaborated on the various antiangiogenic agents developed for the treatment of HCC. They have highlighted clinical trials that explore the efficacy of these treatments, which include the application of monoclonal antibodies and small-molecule kinase inhibitors designed to target specific pathways involved in tumour angiogenesis and growth.</p><p><strong>Objective: </strong>Creating a pharmaceutical chemistry table regarding "Structure-Activity Relationship of New Compounds on anticancer''. To do so, Myricetin and its <i>de novo</i> designed structured variants were used in molecular docking, molecular dynamics, cluster analyses, and 1H NMR estimation to specifically understand and enhance the mechanism of suppressing the VEGF-R1 receptor.</p><p><strong>Methods: </strong>Proper ligands (Myricetin and its analogues) and receptor (VEGF-R1) preparations, and optimizations were done using the density functional theory (DFT)/B3LYP function along with the 6-31G(d,p) basis set principle in the latest software programs such as Gaussian 09, Gauss View 6.0 and Avogadro. Then using PyRx and Autodock Vina 1.1.2., many molecular docking trials were achieved with 100 posed simulations in each run. An extensive cluster analysis was performed to identify the most optimal docking poses with the highest accumulation and most favourable binding interactions, ensuring the accuracy of the study. The docking configurations that exhibited the most precise and accurate poses with lowest inhibition constants were chosen as initial structured data for subsequent Molecular Dynamics (MD) simulations for each drug candidate. To verify the molecular docking results, MD runs were achieved in our supercomputers and the trajectory analyses were made. The data confirmed what was found in molecular docking results, verifying the high efficiency of the druggable molecules' inhibition towards VEGF-R1.</p><p><strong>Results: </stron
目的:目的是通过使用杨梅素及其新设计的类似物抑制VEGF-R1受体来阻止肝癌(肝细胞癌)的进展。背景:VEGF/VEGFR自分泌信号可促进肝细胞癌的生长、进展和转移,这使得开发分子靶向治疗变得非常可行。通过使用VEGF信号通路抑制剂,可以密切监测包括肝细胞癌(HCC)在内的各种癌症的侵袭性和转移性行为。特别是在HCC中,VEGFR-1主要通过触发上皮-间质转化(EMT)过程来促进癌细胞的侵袭能力。VEGFR-1显著影响对HCC细胞侵袭行为至关重要的蛋白水解酶的活性。值得注意的是,已经发现了一种新的机制,即VEGFR-1激活导致MMP-9的上调,从而增强HCC细胞的侵袭性。在他们的研究中,科学家们详细阐述了用于治疗HCC的各种抗血管生成药物。他们强调了探索这些治疗效果的临床试验,其中包括单克隆抗体和小分子激酶抑制剂的应用,这些抑制剂设计用于肿瘤血管生成和生长的特定途径。目的:编制“抗癌新化合物构效关系”药物化学表。为此,我们利用杨梅素及其从头设计的结构变体进行分子对接、分子动力学、聚类分析和1H NMR估计,专门了解和增强抑制VEGF-R1受体的机制。方法:选用合适的配体(杨梅素及其类似物)和受体(VEGF-R1)制备,利用密度泛函理论(DFT)/B3LYP函数和6-31G(d,p)基集原理,在最新的Gaussian 09、Gauss View 6.0和Avogadro软件中进行优化。然后使用PyRx和Autodock Vina 1.1.2。在美国,许多分子对接试验在每次运行中进行了100次模拟。进行了广泛的聚类分析,以确定具有最高积累和最有利的结合相互作用的最优对接姿势,确保研究的准确性。选择具有最低抑制常数的最精确位姿的对接构型作为初始结构化数据,用于后续每种候选药物的分子动力学(MD)模拟。为了验证分子对接的结果,在我们的超级计算机上进行了MD运行,并进行了轨迹分析。该数据证实了分子对接结果的发现,验证了可药物分子对VEGF-R1的高效抑制。结果:与原始杨梅素(-4.77 kcal/mol)相比,胺衍生杨梅素具有较高的对接分数(-10.56 kcal/mol)和较高的抑制常数,而氟衍生杨梅素(-6.45 kcal/mol)在前两个分子之间对VEGF-R1具有亲和力。因此,研究了所有分子在药物化学方面的构效关系,使我们对杨梅素的有机结构对抑制肝癌进展的作用有了更深入的了解。此外,ADME研究表明,胺和氟化衍生杨梅素分子都是很好的候选药物。结论:通过对杨梅素进行特定官能团修饰,杨梅素具有潜在的抗癌潜力。通过全面的计算机计算分析,我们的研究小组通过胺和氟衍生杨梅素的羟基来增强杨梅素的抑制能力,从而提高对接分数和抑制常数。分子对接和MD模拟的研究结果为这些分子作为潜在药物在癌症研究中的体外和体内研究提供了有希望的基础。
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引用次数: 0
Recent Developments in Azetidinone-Azole Conjugates: Emerging Antimicrobial Potentials. 氮杂丁酮-唑缀合物的最新进展:新兴的抗菌潜力。
IF 2.6 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115734064355361241230063744
Dinesh Kumar Mehta, Rajiv Chaurasiya, Rina Das

The emergence of multidrug-resistant microbial strains poses a significant challenge to global public health. In response, researchers have been exploring innovative antimicrobial agents with enhanced efficacy and novel mechanisms of action. One promising approach involves the synthesis of hybrid molecules combining azetidinone and azole moieties, capitalizing on the respective antimicrobial properties of both structural elements. Natural and synthetic azetidinone derivatives hold a prominent position among medicinally significant compounds due to their varied and potent antibiotic activities. Interest persists in discovering new synthetic methods and refining existing ones, as well as applying these methods to create novel, biologically active azetidinone derivatives. Additionally, azoles are highly regarded in pharmaceuticals for their broad efficacy, tolerability, and oral availability. By merging these two pharmacophores, researchers aim to create compounds with synergistic or additive antimicrobial effects, potentially overcoming existing resistance mechanisms. Various synthetic strategies, including click chemistry and multicomponent reactions, have been employed to prepare these hybrid molecules efficiently. The antimicrobial potential of azetidinone-azole conjugates has been extensively evaluated against a spectrum of pathogens, including bacteria, fungi, and protozoa. These studies have demonstrated promising results, with several compounds exhibiting potent activity against both Gram-positive and Gramnegative bacteria, as well as clinically relevant fungal strains. Furthermore, SAR studies have provided valuable insights into the key structural features governing the antimicrobial properties of these conjugates, facilitating further optimization and rational design. In conclusion, the development of azetidinone-azole hybrids represents a promising avenue in the quest for novel antimicrobial agents. This study presents a comprehensive overview of recent advancements in synthesis and antimicrobial evaluation of azetidinone-azole conjugates.

耐多药微生物菌株的出现对全球公共卫生构成了重大挑战。因此,研究人员一直在探索具有增强功效和新的作用机制的创新抗菌药物。一种有希望的方法是合成结合氮杂二酮和唑的杂化分子,利用这两种结构元素各自的抗菌特性。天然和合成的氮杂二酮衍生物由于其多样而有效的抗生素活性而在医学上具有重要意义的化合物中占有突出地位。兴趣持续在发现新的合成方法和改进现有的方法,以及应用这些方法来创造新的,生物活性的氮杂二酮衍生物。此外,唑类药物因其广泛的疗效、耐受性和口服可用性而受到高度重视。通过合并这两种药效团,研究人员的目标是创造具有协同或加性抗菌作用的化合物,潜在地克服现有的耐药机制。各种合成策略,包括点击化学和多组分反应,已被用来有效地制备这些杂化分子。偶氮吡啶酮-唑偶联物的抗菌潜力已被广泛评估,以对抗一系列病原体,包括细菌、真菌和原生动物。这些研究已经证明了有希望的结果,一些化合物对革兰氏阳性和革兰氏阴性细菌以及临床相关的真菌菌株都表现出强有力的活性。此外,SAR研究为这些偶联物抗菌性能的关键结构特征提供了有价值的见解,有助于进一步优化和合理设计。综上所述,氮杂丁酮-唑类化合物的开发是探索新型抗菌药物的一条有前途的途径。本文综述了氮杂丁酮-唑类缀合物的合成及抗菌评价的最新进展。
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引用次数: 0
Exploring 1-Azaaurones: A Concise Overview of Synthetic Strategies and Biological Activities. 探索1-氮杂龙:合成策略和生物活性的简明概述。
IF 2.6 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115734064357796250120060204
Naveen Chauhan, Suresh Kumar

Azaaurones are formed by the replacement of intra-cyclic oxygen of the central core of a five-membered furan ring or any other carbon of aurones by a nitrogen atom. However, 1- azaaurone obtained by the replacement of intra-cyclic oxygen is the most prominent and desirable. They are the bioactive compounds acting as potential anti-inflammatory, anticancer, antibacterial, and antiviral agents. They comprise relatively less explored, pharmacologically active compounds exhibiting diverse biological activities that can act as potential lead compounds in the context of drug development. This review represents a comprehensive and updated overview of the synthetic protocols and biological activities of 1-azaaurones and their derivatives, enabling the readers to know about the vast medicinal potential of azaaurones and their derivatives in different areas and prompt the medicinal chemists to emphasize their further exploration. Furthermore, this review also covers some important Structure-Activity Relationships (SAR), highlighting the most potential compounds in each series, providing pivotal scope for further improvisation.

氮aurones是由一个氮原子取代五元呋喃环中心核心的环内氧或任何其他碳的aurones形成的。然而,通过取代环内氧得到的1-氮杂龙是最突出和最理想的。它们是具有生物活性的化合物,具有潜在的抗炎、抗癌、抗菌和抗病毒作用。它们包含相对较少探索的药理学活性化合物,表现出多种生物活性,可以在药物开发的背景下作为潜在的先导化合物。本文综述了1-氮扎aurones及其衍生物的合成方案和生物活性,使读者了解氮扎aurones及其衍生物在不同领域的巨大药用潜力,并促使药物化学家重视其进一步的探索。此外,本综述还涵盖了一些重要的构效关系(SAR),突出了每个系列中最有潜力的化合物,为进一步的即兴创作提供了关键的范围。
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引用次数: 0
Design and Synthesis of 3-(Phenylsulfonamido)benzamide Derivatives as Potent Carbonic Anhydrase IX Inhibitors: Biological Evaluations and Molecular Modeling Studies. 作为碳酸酐酶IX抑制剂的3-(苯磺胺)苯酰胺衍生物的设计和合成:生物学评价和分子模拟研究。
IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.2174/0115734064325144240823073504
Mohammad A Khanfar, Mohammad Saleh

Introduction: Carbonic anhydrase IX (CAIX) is known to be overexpressed in various tumors and plays a significant role in tumor development and progression.

Methods: A series of 3-(benzylsulfonamido)benzamides derivatives was synthesized and tested for their CAIX inhibitory activities. The two most active compounds were subjected to cytotoxicity testing against a panel of 60 cancer cell lines.

Results: Many of the synthesized compounds successfully inhibited CAIX activities, exhibiting IC50 values in the low nanomolar range. The most potent CAIX inhibitor was compound 14, with an IC50 of 140 nM. Structure-activity relationship analysis of the synthesized compounds supported with molecular docking revealed strong coordination of sulfonamide moiety with the catalytic Zn2+ metal, hydrophobic interactions of the benzylsulfonamido ring with a hydrophobic pocket, and π- stacking interactions of the aryl ring with an aromatic surface. The two most active analogues (10 and 14) were further tested for their antiproliferative activities in the NCI-60 human tumor cell lines. Notably, compound 14 demonstrated potent growth inhibitory effects against several cancer cell lines.

Conclusion: The synthesized analogues represent a novel scaffold for the treatment of different types of cancer by targeting CAIX.

碳酸酐酶IX (carbon anhydrase IX, CAIX)已知在多种肿瘤中过表达,在肿瘤的发生发展中起重要作用。方法:合成一系列3-(苄基磺胺)苯酰胺衍生物,并对其CAIX抑制活性进行测定。两种最有效的化合物对60种癌细胞进行了细胞毒性测试。结果:许多合成的化合物成功地抑制了CAIX活性,IC50值在低纳摩尔范围内。最有效的CAIX抑制剂是化合物14,IC50为140 nM。通过分子对接对合成的化合物进行构效关系分析,发现磺酰胺部分与催化Zn2+金属具有较强的配位性,苯基磺酰胺环与疏水袋具有疏水相互作用,芳基环与芳表面具有π-堆叠相互作用。两种最活跃的类似物(10和14)在NCI-60人肿瘤细胞系中进一步测试了它们的抗增殖活性。值得注意的是,化合物14显示出对几种癌细胞系的有效生长抑制作用。结论:合成的类似物是一种靶向CAIX治疗不同类型癌症的新型支架。
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引用次数: 0
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Medicinal Chemistry
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