首页 > 最新文献

Microbiological research最新文献

英文 中文
Depth-dependent effects of forest diversification on soil functionality and microbial community characteristics in subtropical forests 森林多样化对亚热带森林土壤功能和微生物群落特征的影响取决于深度。
IF 6.1 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-10-20 DOI: 10.1016/j.micres.2024.127931
Kai Ding , Meng Lu , Yuting Zhang , Qiyan Liu , Yiman Zhang , Yinrong Li , Qi Yang , Zhenming Shen , Zaikang Tong , Junhong Zhang
Soil microbes are critical to the maintenance of forest ecosystem function and stability. Forest diversification, such as monocultures versus mixed forests stands, can strongly influence microbial community patterns and processes, as well as their role in soil ecosystem multifunctionality, such as in subtropical forest ecosystems. However, less is known about these patterns and processes vary with soil depth. Here, we investigated the results of an eight-year forest diversification field experiment comparing the soil ecosystem multifunctionality, bacterial and fungal community assembly, and network patterns in mixed versus monoculture plantations along vertical profiles (0–80 cm depth) in a subtropical region. We found that the introduction of broadleaf trees in coniferous monocultures led to enhanced synergies between multiple functions, thus improving soil multifunctionality. The effects of mixed plantations on the functional potential in top soils were greater than in deep soils, especially for carbon degradation genes (apu, xylA, cex, and glx). Microbial community assembly in the top layer, particularly in mixed plantations, was dominated by stochastic processes, whereas deterministic were more important in the deep layer. Soil microbial network complexity and stability were higher in the top layer of mixed plantations, but in the deep layer was monoculture. Interestingly, the changes in microbial communities and multifunctionality in the top layer were mainly related to variation in nutrients, whereas those in the deep were more influenced by soil moisture. Overall, we reveal positive effects of mixed forest stands on soil microbial characteristics and functionality compared to that of monocultures. Our findings highlighted the importance of enhancing functional diversity through the promotion of tree species diversity, and managers can better develop forest management strategies to promote soil health under global change scenarios.
土壤微生物对维持森林生态系统的功能和稳定性至关重要。森林的多样化,如单一林分与混交林分,会对微生物群落的模式和过程以及它们在土壤生态系统多功能性(如亚热带森林生态系统)中的作用产生重大影响。然而,人们对这些模式和过程随土壤深度的变化知之甚少。在此,我们研究了一项为期八年的森林多样化田间试验的结果,比较了亚热带地区混交种植园与单一种植园在垂直剖面(0-80 厘米深)上的土壤生态系统多功能性、细菌和真菌群落组合以及网络模式。我们发现,在针叶树单一栽培中引入阔叶树可增强多种功能之间的协同作用,从而改善土壤的多功能性。混合种植对表层土壤功能潜力的影响大于深层土壤,尤其是对碳降解基因(apu、xylA、cex和glx)的影响。表层土壤,尤其是混合种植园中的土壤,微生物群落的组成主要是随机过程,而深层土壤中的确定性过程则更为重要。混合种植园顶层的土壤微生物网络复杂性和稳定性较高,但深层则为单一种植。有趣的是,表层微生物群落和多功能性的变化主要与养分变化有关,而深层微生物群落和多功能性的变化则更多地受到土壤水分的影响。总之,与单一种植相比,我们发现混交林对土壤微生物特征和功能有积极影响。我们的研究结果强调了通过促进树种多样性来提高功能多样性的重要性,管理者可以更好地制定森林管理策略,以促进全球变化情景下的土壤健康。
{"title":"Depth-dependent effects of forest diversification on soil functionality and microbial community characteristics in subtropical forests","authors":"Kai Ding ,&nbsp;Meng Lu ,&nbsp;Yuting Zhang ,&nbsp;Qiyan Liu ,&nbsp;Yiman Zhang ,&nbsp;Yinrong Li ,&nbsp;Qi Yang ,&nbsp;Zhenming Shen ,&nbsp;Zaikang Tong ,&nbsp;Junhong Zhang","doi":"10.1016/j.micres.2024.127931","DOIUrl":"10.1016/j.micres.2024.127931","url":null,"abstract":"<div><div>Soil microbes are critical to the maintenance of forest ecosystem function and stability. Forest diversification, such as monocultures versus mixed forests stands, can strongly influence microbial community patterns and processes, as well as their role in soil ecosystem multifunctionality, such as in subtropical forest ecosystems. However, less is known about these patterns and processes vary with soil depth. Here, we investigated the results of an eight-year forest diversification field experiment comparing the soil ecosystem multifunctionality, bacterial and fungal community assembly, and network patterns in mixed versus monoculture plantations along vertical profiles (0–80 cm depth) in a subtropical region. We found that the introduction of broadleaf trees in coniferous monocultures led to enhanced synergies between multiple functions, thus improving soil multifunctionality. The effects of mixed plantations on the functional potential in top soils were greater than in deep soils, especially for carbon degradation genes (<em>apu</em>, <em>xylA</em>, <em>cex</em>, and <em>glx</em>). Microbial community assembly in the top layer, particularly in mixed plantations, was dominated by stochastic processes, whereas deterministic were more important in the deep layer. Soil microbial network complexity and stability were higher in the top layer of mixed plantations, but in the deep layer was monoculture. Interestingly, the changes in microbial communities and multifunctionality in the top layer were mainly related to variation in nutrients, whereas those in the deep were more influenced by soil moisture. Overall, we reveal positive effects of mixed forest stands on soil microbial characteristics and functionality compared to that of monocultures. Our findings highlighted the importance of enhancing functional diversity through the promotion of tree species diversity, and managers can better develop forest management strategies to promote soil health under global change scenarios.</div></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":"289 ","pages":"Article 127931"},"PeriodicalIF":6.1,"publicationDate":"2024-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142503924","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Fungal degradation of phenylacetate focusing on CRISPR/Cas9-assisted characterization of two oxidative enzyme genes of Akanthomyces muscarius AM1091 以 CRISPR/Cas9 辅助鉴定 Akanthomyces muscarius AM1091 的两种氧化酶基因为重点的苯乙酸真菌降解。
IF 6.1 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-10-20 DOI: 10.1016/j.micres.2024.127934
Sinil Kim , Yeon-Jae Choi , Hyerang Eom , Hyeon-Su Ro
The degradation of phenylacetate (PA) was investigated as a model to explore aromatic compound breakdown in the fungal system. Fungal strains capable of utilizing PA as their sole carbon source were isolated using a minimal solid medium supplemented with 0.5 % PA. Subsequent cultivation in minimum liquid medium revealed that selected fungal strains, including Trametes versicolor TV0876 and TV3295, Paecilomyces hepiali PH4477, and Akanthomyces muscarius AM1091, efficiently removed PA within 24 h. HPLC analysis of culture supernatants from various fungal strains revealed a time-dependent accumulation of 2-hydroxyphenylacetate (2-HPA) and 4-hydroxyphenylacetate (4-HPA), two key major metabolic products primarily found in ascomycetes and basidiomycetes, respectively. This suggests that the first hydroxylation of PA is catalyzed by two distinct hydroxylases, one for each fungal group. Furthermore, fungal species that make 4-HPA also produce phenylethanol (PE), indicating a distinct catabolic mechanism to remove PA by direct reduction of PA to PE. A. muscarius AM1091, identified as the most efficient PA degrader in this study, was studied further to determine the biochemical pathway of PA degradation. RNA-Seq and RT-PCR analyses of AM1091 revealed two oxidative enzyme genes, CYP1 and DIO4, upregulated in the presence of PA. Targeted disruption utilizing preassembled Cas9-gRNA ribonucleoprotein complexes and homologous DNAs harboring the URA3 gene as an auxotrophic marker resulted in the cyp1 and dio4 mutant strains. The cyp1 mutant was incapable of converting PA to 2-HPA, indicating its involvement in the C2 hydroxylation, whereas the dio4 mutant was unable to degrade 2,5-dihydroxyphenylacetate (2,5-DHPA), resulting in the accumulation of 2,5-DHPA. Our findings indicate that A. muscarius AM1091 degrades PA through the activities of CYP1 and DIO4 for the C2 hydroxylation and subsequent ring-opening reactions, respectively.
研究人员以苯乙酸盐(PA)的降解为模型,探索了真菌系统中芳香化合物的分解过程。使用添加了 0.5 % PA 的最小固体培养基,分离出了能够利用 PA 作为唯一碳源的真菌菌株。随后在最小液体培养基中的培养结果表明,所选真菌菌株(包括多色曲霉 TV0876 和 TV3295、Paecilomyces hepiali PH4477 和 Akanthomyces muscarius AM1091)可在 24 小时内有效去除 PA。对不同真菌菌株培养上清液的 HPLC 分析表明,2-羟基苯乙酸酯(2-HPA)和 4-羟基苯乙酸酯(4-HPA)的积累随时间变化,这两种主要代谢产物分别存在于子囊菌和基枝菌中。这表明 PA 的第一次羟基化是由两种不同的羟化酶催化的,每个真菌类群都有一种。此外,制造 4-HPA 的真菌种类也会产生苯乙醇(PE),这表明存在一种不同的分解代谢机制,通过直接将 PA 还原成 PE 来清除 PA。A. muscarius AM1091 在本研究中被确定为最有效的 PA 降解菌,我们对其进行了进一步研究,以确定 PA 降解的生化途径。AM1091 的 RNA-Seq 和 RT-PCR 分析显示,在 PA 存在的情况下,两个氧化酶基因 CYP1 和 DIO4 上调。利用预组装的 Cas9-gRNA 核糖核蛋白复合物和携带 URA3 基因作为辅助营养标记的同源 DNA 进行靶向破坏,产生了 cyp1 和 dio4 突变株。cyp1 突变体不能将 PA 转化为 2-HPA,表明它参与了 C2 羟基化,而 dio4 突变体不能降解 2,5- 二羟基苯乙酸(2,5-DHPA),导致 2,5-DHPA 的积累。我们的研究结果表明,A. muscarius AM1091 通过 CYP1 和 DIO4 的活性分别进行 C2 羟基化和随后的开环反应来降解 PA。
{"title":"Fungal degradation of phenylacetate focusing on CRISPR/Cas9-assisted characterization of two oxidative enzyme genes of Akanthomyces muscarius AM1091","authors":"Sinil Kim ,&nbsp;Yeon-Jae Choi ,&nbsp;Hyerang Eom ,&nbsp;Hyeon-Su Ro","doi":"10.1016/j.micres.2024.127934","DOIUrl":"10.1016/j.micres.2024.127934","url":null,"abstract":"<div><div>The degradation of phenylacetate (PA) was investigated as a model to explore aromatic compound breakdown in the fungal system. Fungal strains capable of utilizing PA as their sole carbon source were isolated using a minimal solid medium supplemented with 0.5 % PA. Subsequent cultivation in minimum liquid medium revealed that selected fungal strains, including <em>Trametes versicolor</em> TV0876 and TV3295, <em>Paecilomyces hepiali</em> PH4477, and <em>Akanthomyces muscarius</em> AM1091, efficiently removed PA within 24 h. HPLC analysis of culture supernatants from various fungal strains revealed a time-dependent accumulation of 2-hydroxyphenylacetate (2-HPA) and 4-hydroxyphenylacetate (4-HPA), two key major metabolic products primarily found in ascomycetes and basidiomycetes, respectively. This suggests that the first hydroxylation of PA is catalyzed by two distinct hydroxylases, one for each fungal group. Furthermore, fungal species that make 4-HPA also produce phenylethanol (PE), indicating a distinct catabolic mechanism to remove PA by direct reduction of PA to PE. <em>A. muscarius</em> AM1091, identified as the most efficient PA degrader in this study, was studied further to determine the biochemical pathway of PA degradation. RNA-Seq and RT-PCR analyses of AM1091 revealed two oxidative enzyme genes, <em>CYP1</em> and <em>DIO4,</em> upregulated in the presence of PA. Targeted disruption utilizing preassembled Cas9-gRNA ribonucleoprotein complexes and homologous DNAs harboring the <em>URA3</em> gene as an auxotrophic marker resulted in the <em>cyp1</em> and <em>dio4</em> mutant strains. The <em>cyp1</em> mutant was incapable of converting PA to 2-HPA, indicating its involvement in the C2 hydroxylation, whereas the <em>dio4</em> mutant was unable to degrade 2,5-dihydroxyphenylacetate (2,5-DHPA), resulting in the accumulation of 2,5-DHPA. Our findings indicate that <em>A. muscarius</em> AM1091 degrades PA through the activities of CYP1 and DIO4 for the C2 hydroxylation and subsequent ring-opening reactions, respectively.</div></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":"289 ","pages":"Article 127934"},"PeriodicalIF":6.1,"publicationDate":"2024-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142503926","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effect of leucine on mitochondria and oxidative stress to reduce virulence and pathogenicity of Acinetobacter baumannii 亮氨酸对线粒体和氧化应激的影响可降低鲍曼不动杆菌的毒力和致病性。
IF 6.1 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-10-19 DOI: 10.1016/j.micres.2024.127932
Jianxia Zhou , Dingyun Feng , Yuetao Chen , Xia Li , Jiemei Cen , Wenbin Wu , Wenzheng Zheng , Wenlei Gan , Tiantuo Zhang
Elucidating the virulence mechanisms of A. baumannii is essential for developing strategies to mitigate pathogenicity. Although high-virulent strains are associated with increased mortality rate in severely infected patients, the underlying mechanisms remains not well understood. Our analysis revealed leucine as a pivotal biomarker, with the 11dP and paaK being significant contributors to virulence. The ATP-dependent activity and antioxidant activity were identified as the most important pathways in distinguishing the virulence of A. baumannii. Exogenous leucine was found to modulate mitochondria dysfunction and oxidative stress, thereby diminishing the pathogenicity of A. baumannii towards Beas 2B cells. Moreover, leucine reduced the virulence of A. baumannii to Galleria mellonella (G. mellonella) and alleviated pathological damage to lung tissues in mice. Our study offers a novel treatment strategy based on metabolomics, which may assist in the exploration and management of infections caused by highly virulent pathogens. It sets a new course for reducing the impact of highly virulent A. baumannii infections and has significant implications for the development of future therapeutic interventions.
阐明鲍曼不动杆菌的致病机制对于制定减轻致病性的策略至关重要。虽然高毒力菌株与严重感染患者的死亡率增加有关,但其潜在机制仍不十分清楚。我们的分析显示,亮氨酸是一个关键的生物标志物,11dP 和 paaK 也是致病力的重要因素。ATP依赖性活性和抗氧化活性被认为是区分鲍曼不动杆菌毒力的最重要途径。研究发现,外源性亮氨酸可调节线粒体功能障碍和氧化应激,从而降低鲍曼不动杆菌对 Beas 2B 细胞的致病性。此外,亮氨酸还降低了鲍曼尼氏菌对小白鼠(G. mellonella)的毒力,减轻了小白鼠肺组织的病理损伤。我们的研究提供了一种基于代谢组学的新型治疗策略,它可能有助于探索和管理由高致病性病原体引起的感染。它为减少高致病性鲍曼不动杆菌感染的影响开辟了一条新途径,对未来治疗干预措施的开发具有重要意义。
{"title":"Effect of leucine on mitochondria and oxidative stress to reduce virulence and pathogenicity of Acinetobacter baumannii","authors":"Jianxia Zhou ,&nbsp;Dingyun Feng ,&nbsp;Yuetao Chen ,&nbsp;Xia Li ,&nbsp;Jiemei Cen ,&nbsp;Wenbin Wu ,&nbsp;Wenzheng Zheng ,&nbsp;Wenlei Gan ,&nbsp;Tiantuo Zhang","doi":"10.1016/j.micres.2024.127932","DOIUrl":"10.1016/j.micres.2024.127932","url":null,"abstract":"<div><div>Elucidating the virulence mechanisms of <em>A. baumannii</em> is essential for developing strategies to mitigate pathogenicity. Although high-virulent strains are associated with increased mortality rate in severely infected patients, the underlying mechanisms remains not well understood. Our analysis revealed leucine as a pivotal biomarker, with the <em>11d</em>P and <em>paa</em>K being significant contributors to virulence. The ATP-dependent activity and antioxidant activity were identified as the most important pathways in distinguishing the virulence of <em>A. baumannii</em>. Exogenous leucine was found to modulate mitochondria dysfunction and oxidative stress, thereby diminishing the pathogenicity of <em>A. baumannii</em> towards Beas 2B cells. Moreover, leucine reduced the virulence of <em>A. baumannii</em> to <em>Galleria mellonella</em> (<em>G. mellonella</em>) and alleviated pathological damage to lung tissues in mice. Our study offers a novel treatment strategy based on metabolomics, which may assist in the exploration and management of infections caused by highly virulent pathogens. It sets a new course for reducing the impact of highly virulent <em>A. baumannii</em> infections and has significant implications for the development of future therapeutic interventions.</div></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":"290 ","pages":"Article 127932"},"PeriodicalIF":6.1,"publicationDate":"2024-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142503927","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring the multifaceted role of pehR in Ralstonia solanacearum pathogenesis: enzyme activity, motility, and biofilm formation 探索 pehR 在 Ralstonia solanacearum 致病机理中的多方面作用:酶活性、运动性和生物膜形成
IF 6.1 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-10-17 DOI: 10.1016/j.micres.2024.127925
Sharmilee Sarkar , Mohit Yadav , Upalabdha Dey, Manoj Sharma , Rupak Mukhopadhyay , Aditya Kumar
PehR is a transcriptional regulator among the various response regulators found in Ralstonia solanacearum, a bacterium that causes lethal wilt disease in over 450 plant species worldwide, including economically important crops such as tomato, chilli, and brinjal. PehR regulates the production of polygalacturonase, an extracellular enzyme that degrades plant cell walls, playing a significant role in bacterial wilt. Despite its significance, the precise function and regulatory mechanism of PehR in R. solanacearum are yet to be thoroughly investigated. The goal of this research is to better understand the role of PehR in R. solanacearum pathogenicity by identifying the genes and pathways that it regulates. By disrupting the pehR gene, we created the ΔpehR mutant of R. solanacearum F1C1, a strain isolated from Tezpur, Assam, India. Transcriptomic analysis revealed 667 differentially expressed genes (DEGs) in the ΔpehR mutant, with 320 upregulated and 347 downregulated compared to the wild-type F1C1 strain. GO and KEGG analyses indicated the downregulation of genes related to flagellum-dependent cell motility, membrane function, and amino acid degradation pathways in the ΔpehR mutant. EPS estimation, biochemical assays for biofilm production, motility, and enzymatic assays for cellulase and pectinase production were all used in the further characterization process. The ΔpehR mutant showed lower virulence in tomato seedlings compared to the wild-type F1C1 strain. The findings suggest that PehR could be a promising target for bacterial wilt disease control, as well as provide critical information for ensuring crop production safety around the world.
PehR 是 Ralstonia solanacearum 中发现的各种反应调节因子中的一种转录调节因子,这种细菌在全球 450 多种植物中引起致命的枯萎病,其中包括番茄、辣椒和青江菜等具有重要经济价值的作物。PehR 可调节聚半乳糖醛酸酶的产生,这是一种能降解植物细胞壁的胞外酶,在细菌枯萎病中发挥着重要作用。尽管 PehR 意义重大,但其在 R. solanacearum 中的确切功能和调控机制仍有待深入研究。本研究的目标是通过确定 PehR 调控的基因和途径,更好地了解 PehR 在 R. solanacearum 致病性中的作用。通过破坏 pehR 基因,我们创建了 R. solanacearum F1C1 的 ΔpehR 突变体。转录组分析显示,与野生型 F1C1 菌株相比,ΔpehR 突变体中有 667 个差异表达基因(DEGs),其中 320 个基因上调,347 个基因下调。GO和KEGG分析表明,在ΔpehR突变体中,与依赖鞭毛的细胞运动、膜功能和氨基酸降解途径相关的基因下调。在进一步的表征过程中,还使用了 EPS 估算、生物膜生成和运动的生化检测以及纤维素酶和果胶酶生成的酶学检测。与野生型 F1C1 菌株相比,ΔpehR 突变体对番茄幼苗的毒力较低。研究结果表明,PehR可能是细菌性萎蔫病防治的一个有前途的靶标,同时也为确保全球作物生产安全提供了重要信息。
{"title":"Exploring the multifaceted role of pehR in Ralstonia solanacearum pathogenesis: enzyme activity, motility, and biofilm formation","authors":"Sharmilee Sarkar ,&nbsp;Mohit Yadav ,&nbsp;Upalabdha Dey,&nbsp;Manoj Sharma ,&nbsp;Rupak Mukhopadhyay ,&nbsp;Aditya Kumar","doi":"10.1016/j.micres.2024.127925","DOIUrl":"10.1016/j.micres.2024.127925","url":null,"abstract":"<div><div>PehR is a transcriptional regulator among the various response regulators found in <em>Ralstonia solanacearum</em>, a bacterium that causes lethal wilt disease in over 450 plant species worldwide, including economically important crops such as tomato, chilli, and brinjal. PehR regulates the production of polygalacturonase, an extracellular enzyme that degrades plant cell walls, playing a significant role in bacterial wilt. Despite its significance, the precise function and regulatory mechanism of PehR in <em>R. solanacearum</em> are yet to be thoroughly investigated. The goal of this research is to better understand the role of PehR in <em>R. solanacearum</em> pathogenicity by identifying the genes and pathways that it regulates. By disrupting the <em>pehR</em> gene, we created the <em>ΔpehR</em> mutant of <em>R. solanacearum</em> F1C1, a strain isolated from Tezpur, Assam, India. Transcriptomic analysis revealed 667 differentially expressed genes (DEGs) in the <em>ΔpehR</em> mutant, with 320 upregulated and 347 downregulated compared to the wild-type F1C1 strain. GO and KEGG analyses indicated the downregulation of genes related to flagellum-dependent cell motility, membrane function, and amino acid degradation pathways in the <em>ΔpehR</em> mutant. EPS estimation, biochemical assays for biofilm production, motility, and enzymatic assays for cellulase and pectinase production were all used in the further characterization process. The <em>ΔpehR</em> mutant showed lower virulence in tomato seedlings compared to the wild-type F1C1 strain. The findings suggest that PehR could be a promising target for bacterial wilt disease control, as well as provide critical information for ensuring crop production safety around the world.</div></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":"290 ","pages":"Article 127925"},"PeriodicalIF":6.1,"publicationDate":"2024-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142532285","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Expression, regulation and physiological roles of the five Rsm proteins in Pseudomonas syringae pv. tomato DC3000 五种 Rsm 蛋白在假单胞菌 Syringae pv. tomato DC3000 中的表达、调控和生理作用。
IF 6.1 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-10-16 DOI: 10.1016/j.micres.2024.127926
Adriana Vásquez , María-Dolores Ferreiro , Laura Martínez-Rodríguez, María-Trinidad Gallegos
Proteins belonging to the RsmA (regulator of secondary metabolism)/CsrA (carbon storage regulator) family are small RNA-binding proteins that play crucial roles post-transcriptionally regulating gene expression in many Gram-negative and some Gram-positive bacteria. Although most of the bacteria studied have a single RsmA/CsrA gene, Pseudomonas syringae pv. tomato (Pto) DC3000 encodes five Rsm proteins: RsmA/CsrA2, RsmC/CsrA1, RsmD/CsrA4, RsmE/CsrA3, and RsmH/CsrA5. This work aims to provide a comprehensive analysis of the expression of these five rsm protein-encoding genes, elucidate the regulatory mechanisms governing their expression, as well as the physiological relevance of each variant. To achieve this, we examined the expression of rsmA, rsmE, rsmC, rsmD, and rsmH within their genetic contexts, identified their promoter regions, and assessed the impact of both their deletion and overexpression on various Pto DC3000 phenotypes. A novel finding is that rsmA and rsmC are part of an operon with the upstream genes, whereas rsmH seems to be co-transcribed with two downstream genes. We also observed significant variability in expression levels and RpoS dependence among the five rsm paralogs. Thus, despite the extensive repertoire of rsm genes in Pto DC3000, only rsmA, rsmE and rsmH were significantly expressed under all tested conditions (swarming, minimal and T3SS-inducing liquid media). Among these, RsmE and RsmA were corroborated as the most important paralogs at the functional level, whereas RsmH played a minor role in regulating free life and plant-associated phenotypes. Conversely, RsmC and RsmD did not seem to be functional under the conditions tested.
属于 RsmA(次生代谢调节因子)/CsrA(碳储存调节因子)家族的蛋白质是小型 RNA 结合蛋白,在许多革兰氏阴性菌和一些革兰氏阳性菌中发挥着转录后调节基因表达的关键作用。虽然研究的大多数细菌只有一个 RsmA/CsrA 基因,但西红柿假单胞菌(Pseudomonas syringae pv. tomato,Pto)DC3000 编码五个 Rsm 蛋白:RsmA/CsrA2、RsmC/CsrA1、RsmD/CsrA4、RsmE/CsrA3 和 RsmH/CsrA5。本研究旨在全面分析这五个 rsm 蛋白编码基因的表达,阐明其表达的调控机制以及每个变体的生理相关性。为此,我们研究了 rsmA、rsmE、rsmC、rsmD 和 rsmH 在其遗传背景下的表达,确定了它们的启动子区域,并评估了它们的缺失和过表达对 Pto DC3000 各种表型的影响。一个新发现是,rsmA 和 rsmC 与上游基因组成一个操作子,而 rsmH 似乎与两个下游基因共转录。我们还观察到五个 rsm 准同源物之间在表达水平和 RpoS 依赖性方面存在很大差异。因此,尽管 Pto DC3000 中有大量 rsm 基因,但只有 rsmA、rsmE 和 rsmH 在所有测试条件(蜂群、最小和 T3SS 诱导液体培养基)下都有显著表达。其中,RsmE 和 RsmA 在功能水平上被证实为最重要的旁系亲属,而 RsmH 在调节自由生活和植物相关表型方面作用较小。相反,RsmC 和 RsmD 在测试条件下似乎不起作用。
{"title":"Expression, regulation and physiological roles of the five Rsm proteins in Pseudomonas syringae pv. tomato DC3000","authors":"Adriana Vásquez ,&nbsp;María-Dolores Ferreiro ,&nbsp;Laura Martínez-Rodríguez,&nbsp;María-Trinidad Gallegos","doi":"10.1016/j.micres.2024.127926","DOIUrl":"10.1016/j.micres.2024.127926","url":null,"abstract":"<div><div>Proteins belonging to the RsmA (regulator of secondary metabolism)/CsrA (carbon storage regulator) family are small RNA-binding proteins that play crucial roles post-transcriptionally regulating gene expression in many Gram-negative and some Gram-positive bacteria. Although most of the bacteria studied have a single RsmA/CsrA gene, <em>Pseudomonas syringae</em> pv. tomato (Pto) DC3000 encodes five Rsm proteins: RsmA/CsrA2, RsmC/CsrA1, RsmD/CsrA4, RsmE/CsrA3, and RsmH/CsrA5. This work aims to provide a comprehensive analysis of the expression of these five <em>rsm</em> protein-encoding genes, elucidate the regulatory mechanisms governing their expression, as well as the physiological relevance of each variant. To achieve this, we examined the expression of <em>rsmA, rsmE, rsmC, rsmD, and rsmH</em> within their genetic contexts, identified their promoter regions, and assessed the impact of both their deletion and overexpression on various Pto DC3000 phenotypes. A novel finding is that <em>rsmA</em> and <em>rsmC</em> are part of an operon with the upstream genes, whereas <em>rsmH</em> seems to be co-transcribed with two downstream genes. We also observed significant variability in expression levels and RpoS dependence among the five <em>rsm</em> paralogs. Thus, despite the extensive repertoire of <em>rsm</em> genes in Pto DC3000, only <em>rsmA</em>, <em>rsmE</em> and <em>rsmH</em> were significantly expressed under all tested conditions (swarming, minimal and T3SS-inducing liquid media). Among these, RsmE and RsmA were corroborated as the most important paralogs at the functional level, whereas RsmH played a minor role in regulating free life and plant-associated phenotypes. Conversely, RsmC and RsmD did not seem to be functional under the conditions tested.</div></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":"289 ","pages":"Article 127926"},"PeriodicalIF":6.1,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142503925","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Emerging concepts in mucosal immunity and oral microecological control of respiratory virus infection-related inflammatory diseases 呼吸道病毒感染相关炎症疾病的粘膜免疫和口腔微生态控制的新概念。
IF 6.1 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-10-12 DOI: 10.1016/j.micres.2024.127930
Ying Wang , Jiaxuan Li , Ruyi Chen , Qiuyi Xu , Di Wang , Chenxi Mao , Ziyi Xiang , Guangshang Wu , Ying Yu , Jianhua Li , Yuejuan Zheng , Keda Chen
Oral microecological imbalance is closely linked to oral mucosal inflammation and is implicated in the development of both local and systemic diseases, including those caused by viral infections. This review examines the critical role of the interleukin (IL)-17/helper T cell 17 (Th17) axis in regulating immune responses within the oral mucosa, focusing on both its protective and pathogenic roles during inflammation. We specifically highlight how the IL-17/Th17 pathway contributes to dysregulated inflammation in the context of respiratory viral infections. Furthermore, this review explores the potential interactions between respiratory viruses and the oral microbiota, emphasizing how alterations in the oral microbiome and increased production of proinflammatory factors may serve as early, non-invasive biomarkers for predicting the severity of respiratory viral infections. These findings provide insights into novel diagnostic approaches and therapeutic strategies aimed at mitigating respiratory disease severity through monitoring and modulating the oral microbiome.
口腔微生态失衡与口腔粘膜炎症密切相关,并与局部和全身性疾病(包括由病毒感染引起的疾病)的发生有关。本综述探讨了白细胞介素(IL)-17/辅助 T 细胞 17(Th17)轴在调节口腔粘膜免疫反应中的关键作用,重点关注其在炎症过程中的保护和致病作用。我们特别强调了在呼吸道病毒感染的情况下,IL-17/Th17 通路是如何导致炎症失调的。此外,本综述还探讨了呼吸道病毒与口腔微生物群之间的潜在相互作用,强调了口腔微生物群的改变和促炎因子的增加可作为早期非侵入性生物标志物,用于预测呼吸道病毒感染的严重程度。这些发现为新型诊断方法和治疗策略提供了启示,这些方法和策略旨在通过监测和调节口腔微生物组来减轻呼吸道疾病的严重程度。
{"title":"Emerging concepts in mucosal immunity and oral microecological control of respiratory virus infection-related inflammatory diseases","authors":"Ying Wang ,&nbsp;Jiaxuan Li ,&nbsp;Ruyi Chen ,&nbsp;Qiuyi Xu ,&nbsp;Di Wang ,&nbsp;Chenxi Mao ,&nbsp;Ziyi Xiang ,&nbsp;Guangshang Wu ,&nbsp;Ying Yu ,&nbsp;Jianhua Li ,&nbsp;Yuejuan Zheng ,&nbsp;Keda Chen","doi":"10.1016/j.micres.2024.127930","DOIUrl":"10.1016/j.micres.2024.127930","url":null,"abstract":"<div><div>Oral microecological imbalance is closely linked to oral mucosal inflammation and is implicated in the development of both local and systemic diseases, including those caused by viral infections. This review examines the critical role of the interleukin (IL)-17/helper T cell 17 (Th17) axis in regulating immune responses within the oral mucosa, focusing on both its protective and pathogenic roles during inflammation. We specifically highlight how the IL-17/Th17 pathway contributes to dysregulated inflammation in the context of respiratory viral infections. Furthermore, this review explores the potential interactions between respiratory viruses and the oral microbiota, emphasizing how alterations in the oral microbiome and increased production of proinflammatory factors may serve as early, non-invasive biomarkers for predicting the severity of respiratory viral infections. These findings provide insights into novel diagnostic approaches and therapeutic strategies aimed at mitigating respiratory disease severity through monitoring and modulating the oral microbiome.</div></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":"289 ","pages":"Article 127930"},"PeriodicalIF":6.1,"publicationDate":"2024-10-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469857","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
From probiotic chassis to modification strategies, control and improvement of genetically engineered probiotics for inflammatory bowel disease 从益生菌底盘到改造策略,控制和改进用于治疗炎症性肠病的基因工程益生菌
IF 6.1 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-10-10 DOI: 10.1016/j.micres.2024.127928
Yuewen Huang , Shan Peng , Rong Zeng , Hao Yao , Guangfu Feng , Jun Fang
With the rising morbidity of inflammatory bowel disease (IBD) year by year, conventional therapeutic drugs with systemic side effects are no longer able to meet the requirements of patients. Probiotics can improve gut microbiota, enhance intestinal barrier function, and regulate mucosal immunity, making them a potential complementary or alternative therapy for IBD. To compensate for the low potency of probiotics, genetic engineering technology has been widely used to improve their therapeutic function. In this review, we systematically summarize the genetically engineered probiotics used for IBD treatment, including probiotic chassis, genetic modification strategies, methods for controlling probiotics, and means of improving efficacy. Finally, we provide prospects on how genetically engineered probiotics can be extended to clinical applications.
随着炎症性肠病(IBD)发病率的逐年上升,具有全身副作用的传统治疗药物已无法满足患者的要求。益生菌可以改善肠道微生物群,增强肠道屏障功能,调节粘膜免疫,是治疗 IBD 的潜在补充或替代疗法。为了弥补益生菌效力低的缺陷,基因工程技术已被广泛用于改善益生菌的治疗功能。在这篇综述中,我们系统地总结了用于 IBD 治疗的基因工程益生菌,包括益生菌底盘、基因修饰策略、控制益生菌的方法以及提高疗效的手段。最后,我们对如何将基因工程益生菌推广到临床应用进行了展望。
{"title":"From probiotic chassis to modification strategies, control and improvement of genetically engineered probiotics for inflammatory bowel disease","authors":"Yuewen Huang ,&nbsp;Shan Peng ,&nbsp;Rong Zeng ,&nbsp;Hao Yao ,&nbsp;Guangfu Feng ,&nbsp;Jun Fang","doi":"10.1016/j.micres.2024.127928","DOIUrl":"10.1016/j.micres.2024.127928","url":null,"abstract":"<div><div>With the rising morbidity of inflammatory bowel disease (IBD) year by year, conventional therapeutic drugs with systemic side effects are no longer able to meet the requirements of patients. Probiotics can improve gut microbiota, enhance intestinal barrier function, and regulate mucosal immunity, making them a potential complementary or alternative therapy for IBD. To compensate for the low potency of probiotics, genetic engineering technology has been widely used to improve their therapeutic function. In this review, we systematically summarize the genetically engineered probiotics used for IBD treatment, including probiotic chassis, genetic modification strategies, methods for controlling probiotics, and means of improving efficacy. Finally, we provide prospects on how genetically engineered probiotics can be extended to clinical applications.</div></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":"289 ","pages":"Article 127928"},"PeriodicalIF":6.1,"publicationDate":"2024-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142433205","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transcriptomics reveals the regulation of the immune system of the mushroom-forming fungus Schizophyllum commune during interaction with four competitors 转录组学揭示了形成蘑菇的真菌五味子在与四种竞争者相互作用过程中对免疫系统的调控
IF 6.1 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-10-09 DOI: 10.1016/j.micres.2024.127929
Erik P.W. Beijen, Marieke H. van Maanen, Ioana M. Marian, Janieke X. Klusener, Emmeline van Roosmalen, Koen C. Herman, Margot C. Koster, Robin A. Ohm
Mushroom-forming fungi frequently encounter competitors during their lifecycle, but their defense mechanisms remain largely unexplored. We studied the response of the mushroom-forming fungus Schizophyllum commune during interaction with the fungal competitors Trichoderma harzianum, Trichoderma aggressivum and Purpureocillium lilacinum and the bacterial competitor Serratia quinivorans. Transcriptomics revealed 632 up-regulated genes in the direct interaction zone, which were enriched in small secreted proteins and transporters. A set of 26 genes were up-regulated during all interactions, indicating a core transcriptomic defense response. In the non-interacting edge of the mycelium of S. commune, there were 154 up-regulated genes, suggesting that there is a systemic response due to a signal that reaches unaffected areas. The GATA zinc finger transcription factor gene gat1 was up-regulated during interaction and a Δgat1 strain displayed increased colonization by T. harzianum. Previously linked to mushroom development, this transcription factor apparently has a dual role. Moreover, 138 genes were up-regulated during both interaction and mushroom development, indicating priming of the defense response during development to prepare the fruiting body for future interactions. Overall, we unveiled a defensive response of S. commune during interaction with fungal and bacterial competitors and identified a regulator of this response.
蘑菇真菌在其生命周期中经常会遇到竞争者,但它们的防御机制在很大程度上仍未得到探索。我们研究了形成蘑菇的真菌牛肝菌在与真菌竞争者哈茨真菌(Trichoderma harzianum)、侵袭性毛霉(Trichoderma aggressivum)、紫色毛霉(Purpureocillium lilacinum)以及细菌竞争者奎尼沃氏沙雷氏菌(Serratia quinivorans)相互作用过程中的反应。转录组学发现,在直接相互作用区有 632 个上调基因,其中富含小型分泌蛋白和转运体。一组 26 个基因在所有相互作用过程中都被上调,表明存在核心转录组防御反应。在 S. commune 菌丝体的非交互作用边缘,有 154 个基因上调,表明由于信号到达未受影响的区域而产生了系统反应。在相互作用过程中,GATA 锌指转录因子基因 gat1 被上调,Δgat1 菌株被 T. harzianum 定殖的数量增加。这种转录因子以前与蘑菇的发育有关,显然具有双重作用。此外,138 个基因在交互作用和蘑菇发育过程中均上调,这表明防御反应在发育过程中启动,为子实体未来的交互作用做好准备。总之,我们揭示了牛肝菌在与真菌和细菌竞争者相互作用期间的防御反应,并确定了这种反应的调节因子。
{"title":"Transcriptomics reveals the regulation of the immune system of the mushroom-forming fungus Schizophyllum commune during interaction with four competitors","authors":"Erik P.W. Beijen,&nbsp;Marieke H. van Maanen,&nbsp;Ioana M. Marian,&nbsp;Janieke X. Klusener,&nbsp;Emmeline van Roosmalen,&nbsp;Koen C. Herman,&nbsp;Margot C. Koster,&nbsp;Robin A. Ohm","doi":"10.1016/j.micres.2024.127929","DOIUrl":"10.1016/j.micres.2024.127929","url":null,"abstract":"<div><div>Mushroom-forming fungi frequently encounter competitors during their lifecycle, but their defense mechanisms remain largely unexplored. We studied the response of the mushroom-forming fungus <em>Schizophyllum commune</em> during interaction with the fungal competitors <em>Trichoderma harzianum</em>, <em>Trichoderma aggressivum</em> and <em>Purpureocillium lilacinum</em> and the bacterial competitor <em>Serratia quinivorans.</em> Transcriptomics revealed 632 up-regulated genes in the direct interaction zone, which were enriched in small secreted proteins and transporters. A set of 26 genes were up-regulated during all interactions, indicating a core transcriptomic defense response. In the non-interacting edge of the mycelium of <em>S. commune</em>, there were 154 up-regulated genes, suggesting that there is a systemic response due to a signal that reaches unaffected areas. The GATA zinc finger transcription factor gene <em>gat1</em> was up-regulated during interaction and a Δ<em>gat1</em> strain displayed increased colonization by <em>T. harzianum</em>. Previously linked to mushroom development, this transcription factor apparently has a dual role. Moreover, 138 genes were up-regulated during both interaction and mushroom development, indicating priming of the defense response during development to prepare the fruiting body for future interactions. Overall, we unveiled a defensive response of <em>S. commune</em> during interaction with fungal and bacterial competitors and identified a regulator of this response.</div></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":"289 ","pages":"Article 127929"},"PeriodicalIF":6.1,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142441778","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Christensenellaceae minuta modulates epithelial healing via PI3K-AKT pathway and macrophage differentiation in the colitis Christensenellaceae minuta 通过 PI3K-AKT 通路和巨噬细胞分化调节结肠炎的上皮愈合。
IF 6.1 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-10-09 DOI: 10.1016/j.micres.2024.127927
Ting Yao , Youhe Wu , Liyun Fu, Jiawen Lv, Longxian Lv, Lanjuan Li
Ulcerative colitis (UC) is a chronic inflammatory disorder with an unsatisfactory cure rate and mucosal healing is a key treatment objective. Christensenellaceae minuta (C. minuta) has emerged as a next-generation of probiotic for maintaining intestinal health. We investigated the therapeutic efficacy of C. minuta in dextran sulfate sodium (DSS)-induced colitis, focusing on mucosal healing and the underlying mechanisms. C. minuta effectively alleviated colitis and promoted the regeneration of intestinal epithelial cells (IECs). Using 16S rRNA sequencing and metabolomics, we found that C. minuta administration increased beneficial bacteria, decreased pathogenic bacteria, and significantly elevated propionic acid levels. Additionally, C. minuta activated the PI3K-AKT pathway by upregulating systemic and local IGF-1 expression. Inhibiting the PI3K-AKT pathway reduced the therapeutic effects of C. minuta and impaired IEC regeneration. Furthermore, C. minuta promoted macrophage differentiation into the M2 phenotype and decreased proinflammatory factors. We propose that C. minuta alleviates colitis by regulating the gut microbiota, modulating macrophage differentiation, and enhancing mucosal healing by activating the PI3K-AKT pathway via IGF-1 secretion induced by short-chain fatty acids. Our findings provide evidence from animal experiments to support future clinical trials and the therapeutic translation of C. minuta.
溃疡性结肠炎(UC)是一种慢性炎症性疾病,治愈率不尽人意,粘膜愈合是治疗的关键目标。Christensenellaceae minuta(C. minuta)已成为维护肠道健康的新一代益生菌。我们研究了C. minuta对葡聚糖硫酸钠(DSS)诱导的结肠炎的疗效,重点关注粘膜愈合及其内在机制。C. minuta能有效缓解结肠炎并促进肠上皮细胞(IECs)的再生。通过 16S rRNA 测序和代谢组学研究,我们发现服用 C. minuta 能增加有益菌,减少致病菌,并显著提高丙酸水平。此外,C. minuta 通过上调全身和局部 IGF-1 的表达激活了 PI3K-AKT 通路。抑制 PI3K-AKT 通路会降低 C. minuta 的治疗效果,阻碍 IEC 再生。此外,C. minuta 还能促进巨噬细胞向 M2 表型分化并减少促炎因子。我们认为,C. minuta 可通过调节肠道微生物群、调节巨噬细胞分化以及通过短链脂肪酸诱导的 IGF-1 分泌激活 PI3K-AKT 通路来促进粘膜愈合,从而缓解结肠炎。我们的研究结果为未来的临床试验和 C. minuta 的治疗转化提供了动物实验证据。
{"title":"Christensenellaceae minuta modulates epithelial healing via PI3K-AKT pathway and macrophage differentiation in the colitis","authors":"Ting Yao ,&nbsp;Youhe Wu ,&nbsp;Liyun Fu,&nbsp;Jiawen Lv,&nbsp;Longxian Lv,&nbsp;Lanjuan Li","doi":"10.1016/j.micres.2024.127927","DOIUrl":"10.1016/j.micres.2024.127927","url":null,"abstract":"<div><div>Ulcerative colitis (UC) is a chronic inflammatory disorder with an unsatisfactory cure rate and mucosal healing is a key treatment objective. <em>Christensenellaceae minuta</em> (<em>C. minuta</em>) has emerged as a next-generation of probiotic for maintaining intestinal health. We investigated the therapeutic efficacy of <em>C. minuta</em> in dextran sulfate sodium (DSS)-induced colitis, focusing on mucosal healing and the underlying mechanisms. <em>C. minuta</em> effectively alleviated colitis and promoted the regeneration of intestinal epithelial cells (IECs). Using 16S rRNA sequencing and metabolomics, we found that <em>C. minuta</em> administration increased beneficial bacteria, decreased pathogenic bacteria, and significantly elevated propionic acid levels. Additionally<em>, C. minuta</em> activated the PI3K-AKT pathway by upregulating systemic and local IGF-1 expression. Inhibiting the PI3K-AKT pathway reduced the therapeutic effects of <em>C. minuta</em> and impaired IEC regeneration. Furthermore, <em>C. minuta</em> promoted macrophage differentiation into the M2 phenotype and decreased proinflammatory factors. We propose that <em>C. minuta</em> alleviates colitis by regulating the gut microbiota, modulating macrophage differentiation, and enhancing mucosal healing by activating the PI3K-AKT pathway via IGF-1 secretion induced by short-chain fatty acids. Our findings provide evidence from animal experiments to support future clinical trials and the therapeutic translation of <em>C. minuta</em>.</div></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":"289 ","pages":"Article 127927"},"PeriodicalIF":6.1,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142406615","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Brassinosteroids mediate arbuscular mycorrhizal symbiosis through multiple potential pathways and partial identification in tomato 芸苔素类固醇通过多种潜在途径介导丛枝菌根共生,并在番茄中进行了部分鉴定
IF 6.1 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-10-05 DOI: 10.1016/j.micres.2024.127924
Ying Ren , Brian Tobin , Shuyi Yang , Tingying Xu , Hui Chen , Ming Tang
Currently, little is known regarding the specific processes through which brassinosteroids (BR) affect arbuscular mycorrhizal (AM) symbiosis. Understanding this relationship is vital for advancing plant physiology and agricultural applications. In this study, we aimed to elucidate the regulatory mechanisms of BR in AM symbiosis. According to the log2 fold change-value and adjP-value, we integrated the common differentially expressed genes (DEGs) in maize (Zea mays L.) treated with BR and AM, Arabidopsis (Arabidopsis thaliana) mutants deficient in BR receptors, and tomato (Solanum lycopersicum) plants inoculated with AM fungi. In addition, we characterized the symbiotic performance of tomato plants with BR receptor defects and overexpression. The results indicated that the common differential genes induced by BR and AM were involved in metabolic processes, such as cell wall modification, cytoskeleton remodeling, auxin and ethylene signaling, photosynthesis, mineral nutrient transport, and stress defense. Specifically, these include the BR1 gene, which modifies the cell wall. However, the fungal colonization rate of BR receptor-deficient tomato plants was significantly reduced, and the total phosphorus concentration was increased. Conversely, the performance of the overexpressing tomato transformation plants demonstrated a significant contrast. Additionally, the mild rescue of mycorrhizal attenuation in mutants treated with exogenous BR suggests the possibility of direct feedback from BR synthesis to AM. Notably, the cell wall modification gene (SlBR1) and calcium spike gene (SlIPD3) were induced by both BR and AM, suggesting that BR may influence cell penetration during the early stages of AM colonization. Synthesis: Our results demonstrated that BR positively regulates AM symbiosis through multiple pathways. These findings pave the way for future research, including isolation of the individual contributions of each pathway to this complex process and exploration of possible agricultural applications.
目前,人们对铜绿素类固醇(BR)影响丛枝菌根(AM)共生的具体过程知之甚少。了解这种关系对于促进植物生理学和农业应用至关重要。在本研究中,我们旨在阐明 BR 在 AM 共生中的调控机制。根据对折变化值(log2 fold change-value)和P值(adjP-value),我们整合了经BR和AM处理的玉米(Zea mays L.)、缺乏BR受体的拟南芥(Arabidopsis thaliana)突变体以及接种了AM真菌的番茄(Solanum lycopersicum)植株中常见的差异表达基因(DEGs)。此外,我们还研究了BR受体缺陷和过表达的番茄植株的共生表现。结果表明,BR和AM诱导的共同差异基因参与了代谢过程,如细胞壁修饰、细胞骨架重塑、辅助素和乙烯信号转导、光合作用、矿质养分运输和胁迫防御。具体来说,其中包括改造细胞壁的 BR1 基因。然而,BR 受体缺陷番茄植株的真菌定植率显著降低,总磷浓度增加。相反,过表达番茄转化植株的表现却呈现出明显的反差。此外,用外源 BR 处理的突变体对菌根衰减的轻度挽救表明,可能存在从 BR 合成到 AM 的直接反馈。值得注意的是,细胞壁修饰基因(SlBR1)和钙穗基因(SlIPD3)同时被BR和AM诱导,这表明BR可能会在AM定殖的早期阶段影响细胞渗透。综述:我们的研究结果表明,BR 通过多种途径积极调控 AM 的共生。这些发现为今后的研究铺平了道路,包括分离出每种途径对这一复杂过程的贡献,以及探索可能的农业应用。
{"title":"Brassinosteroids mediate arbuscular mycorrhizal symbiosis through multiple potential pathways and partial identification in tomato","authors":"Ying Ren ,&nbsp;Brian Tobin ,&nbsp;Shuyi Yang ,&nbsp;Tingying Xu ,&nbsp;Hui Chen ,&nbsp;Ming Tang","doi":"10.1016/j.micres.2024.127924","DOIUrl":"10.1016/j.micres.2024.127924","url":null,"abstract":"<div><div>Currently, little is known regarding the specific processes through which brassinosteroids (BR) affect arbuscular mycorrhizal (AM) symbiosis. Understanding this relationship is vital for advancing plant physiology and agricultural applications. In this study, we aimed to elucidate the regulatory mechanisms of BR in AM symbiosis. According to the log2 fold change-value and adjP-value, we integrated the common differentially expressed genes (DEGs) in maize (<em>Zea mays</em> L.) treated with BR and AM, Arabidopsis (<em>Arabidopsis thaliana</em>) mutants deficient in BR receptors, and tomato (<em>Solanum lycopersicum</em>) plants inoculated with AM fungi. In addition, we characterized the symbiotic performance of tomato plants with BR receptor defects and overexpression. The results indicated that the common differential genes induced by BR and AM were involved in metabolic processes, such as cell wall modification, cytoskeleton remodeling, auxin and ethylene signaling, photosynthesis, mineral nutrient transport, and stress defense. Specifically, these include the <em>BR1</em> gene, which modifies the cell wall. However, the fungal colonization rate of BR receptor-deficient tomato plants was significantly reduced, and the total phosphorus concentration was increased. Conversely, the performance of the overexpressing tomato transformation plants demonstrated a significant contrast. Additionally, the mild rescue of mycorrhizal attenuation in mutants treated with exogenous BR suggests the possibility of direct feedback from BR synthesis to AM. Notably, the cell wall modification gene (<em>SlBR1</em>) and calcium spike gene (<em>SlIPD3</em>) were induced by both BR and AM, suggesting that BR may influence cell penetration during the early stages of AM colonization. Synthesis: Our results demonstrated that BR positively regulates AM symbiosis through multiple pathways. These findings pave the way for future research, including isolation of the individual contributions of each pathway to this complex process and exploration of possible agricultural applications.</div></div>","PeriodicalId":18564,"journal":{"name":"Microbiological research","volume":"289 ","pages":"Article 127924"},"PeriodicalIF":6.1,"publicationDate":"2024-10-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142417751","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Microbiological research
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1