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Hexanoic acid inhibits in vitro growth and biofilm formation in Xanthomonas vesicatoria and Xanthomonas euvesicatoria. 己酸抑制白斑黄单胞菌和白斑黄单胞菌体外生长和生物膜形成。
IF 6.9 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2026-03-18 DOI: 10.1016/j.micres.2026.128504
Lorena Sánchez-Giménez, Loredana Scalschi, Eugenio Llorens, Eva Falomir, Gemma Camañes, Begonya Vicedo

Hexanoic acid (Hx) is a naturally occurring fatty acid with antimicrobial properties and potential to induce plant defense responses. This study evaluated the in vitro effect of Hx on Xanthomonas vesicatoria and Xanthomonas euvesicatoria, focusing on bacterial growth and biofilm formation, key factors for pathogen survival and virulence. The obtained results indicate that Hx did not exert a direct lethal effect at low concentrations on bacterial cells, but higher doses (≥ 12 mM) displayed a bactericidal effect against both species, with X. euvesicatoria showing higher sensitivity than X. vesicatoria. Scanning electron microscopy (SEM) revealed cell wall damage and absence of biofilm at ≥ 10 mM Hx, consistent with the quorum sensing (QS) inhibition observed at this concentration. Moreover, exposure to 5 mM Hx triggered a significant increase in reactive oxygen species (ROS), indicating the inability of both bacteria to overcome the toxic environment generated by this compound. In addition, gene expression analysis demonstrated that Hx significantly impaired early biofilm establishment by downregulating motility- and virulence-related genes, particularly evident in X. euvesicatoria from lower concentrations. Although responses differed between the two species in survival strategies and sensitivities to Hx, both converged in a compromised biofilm formation and stress response capacity. Overall, this study provides mechanistic insights into Xanthomonas sensitivity to Hx and highlights biofilm disruption as a central mechanism underlying its antimicrobial activity under in vitro conditions.

己酸(Hx)是一种天然存在的脂肪酸,具有抗菌特性和诱导植物防御反应的潜力。本研究主要从病原菌生长和生物膜形成、病原菌存活和毒力的关键因素两方面评价了Hx对发白黄单胞菌和发紫黄单胞菌的体外作用。结果表明,低浓度的Hx对细菌细胞没有直接致死作用,但高剂量(≥12 mM)对两种细菌都有杀灭作用,其中鸡瘟x的敏感性高于鸡瘟x。扫描电镜(SEM)显示≥ 10 mM Hx时细胞壁损伤和生物膜缺失,与该浓度下观察到的群体感应(QS)抑制一致。此外,暴露于5 mM Hx引发活性氧(ROS)显著增加,表明这两种细菌无法克服该化合物产生的有毒环境。此外,基因表达分析表明,Hx通过下调运动性和毒力相关基因,显著损害了早期生物膜的形成,在低浓度的euvesicatoria中尤其明显。尽管这两个物种的生存策略和对Hx的敏感性不同,但它们的生物膜形成和应激反应能力都有所降低。总的来说,本研究提供了黄单胞菌对Hx敏感性的机制见解,并强调了生物膜破坏是其体外抗菌活性的核心机制。
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引用次数: 0
AEG-1 3'UTR functions as a ceRNA to facilitate Helicobacter pylori-induced gastric cancer EMT by regulating the miR-375-3p/JAK2 axis. AEG-1 3'UTR作为ceRNA通过调节miR-375-3p/JAK2轴促进幽门螺杆菌诱导的胃癌EMT。
IF 6.9 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2026-03-14 DOI: 10.1016/j.micres.2026.128502
Jiale Chen, Xin Li, Furui Zhang, Xuebo Han, Meng He, Xuequan Wang, Jing Wu, Linhan Ni, Jing Liu, Juan Chen, Kunmei Liu, Le Guo

Helicobacter pylori (H. pylori) infection is a major risk factor for gastric cancer (GC), but the molecular mechanisms driving H. pylori-induced gastric carcinogenesis remain incompletely understood. This study investigates the role of the AEG-1 3'-untranslated region (3'UTR) as a competitive endogenous RNA (ceRNA) in this process. A ceRNA network was constructed via whole-transcriptome sequencing of H. pylori-associated GC. Gain- and loss-of-function experiments were performed to assess the impact of the AEG-1 3'UTR on epithelial-mesenchymal transition (EMT) in infected GC cells. The regulatory mechanism was explored using bioinformatics, dual-luciferase reporter assays, and rescue experiments. In vivo effects were evaluated using AEG-1 knockout mouse models of H. pylori infection and nude mouse xenograft models. Results showed that AEG-1 and JAK2 were upregulated and miR-375-3p downregulated in H. pylori-infected GC cells and tissues. The AEG-1 3'UTR promoted proliferation, migration, invasion, and EMT by sponging miR-375-3p, thereby derepressing JAK2 and activating JAK2/STAT3 signaling. These oncogenic effects were reversed by JAK2 silencing or miR-375-3p overexpression. In AEG-1 knockout mice, H. pylori colonization and gastric inflammation were markedly reduced, accompanied by decreased expression of EMT and proliferation markers. Xenograft models further confirmed that the AEG-1/miR-375-3p/JAK2 axis drives GC growth and lung metastasis. These findings identify AEG-1 3'UTR as a ceRNA that regulates H. pylori-mediated EMT and carcinogenesis via the miR-375-3p/JAK2 axis, highlighting its potential as a therapeutic target.

幽门螺杆菌(Helicobacter pylori, H. pylori)感染是胃癌(gastric cancer, GC)的主要危险因素,但幽门螺杆菌诱发胃癌的分子机制尚不完全清楚。本研究探讨了AEG-1 3'-非翻译区(3' utr)作为竞争性内源性RNA (ceRNA)在这一过程中的作用。通过幽门螺杆菌相关GC的全转录组测序构建了ceRNA网络。通过功能获得和功能丧失实验来评估AEG-1 3'UTR对感染GC细胞上皮-间质转化(EMT)的影响。利用生物信息学、双荧光素酶报告基因检测和救援实验来探索其调控机制。采用AEG-1敲除小鼠幽门螺杆菌感染模型和裸鼠异种移植模型来评估体内效应。结果显示,在幽门螺杆菌感染的GC细胞和组织中,AEG-1和JAK2表达上调,miR-375-3p表达下调。AEG-1 3'UTR通过海绵化miR-375-3p促进增殖、迁移、侵袭和EMT,从而抑制JAK2并激活JAK2/STAT3信号。这些致癌作用可通过JAK2沉默或miR-375-3p过表达逆转。在AEG-1基因敲除小鼠中,幽门螺杆菌定植和胃炎症明显减少,并伴有EMT和增殖标志物的表达下降。异种移植模型进一步证实,AEG-1/miR-375-3p/JAK2轴驱动GC生长和肺转移。这些发现确定了AEG-1 3'UTR是通过miR-375-3p/JAK2轴调节幽门螺杆菌介导的EMT和癌变的ceRNA,突出了其作为治疗靶点的潜力。
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引用次数: 0
Volatile organic compounds from the salt-tolerant Glutamicibacter halophytocola KLBMP 5180 enhance salt stress tolerance in tomato seedlings by regulating antioxidant defense, ion homeostasis, and auxin, jasmonic acid/ethylene signaling pathways. 耐盐谷氨酰胺菌KLBMP 5180挥发性有机化合物通过调节抗氧化防御、离子稳态和生长素、茉莉酸/乙烯信号通路增强番茄幼苗的耐盐性。
IF 6.9 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2026-03-13 DOI: 10.1016/j.micres.2026.128501
Jing Tao, Han-Xuan Huang, Yue-Ying Qin, Qing Wang, Su-Yun Kong, Yi-Fei Lu, Zhi-Yuan Wan, Ke Xing, Sheng Qin

The application of salt-tolerant plant growth-promoting rhizobacteria (PGPR) represents a promising strategy to alleviate salt stress in crops. However, the mechanisms by which volatile organic compounds (VOCs) from actinomycetes mitigate salinity stress remain unclear. In this study, exposure to VOCs from the halotolerant actinomycete Glutamicibacter halophytocola KLBMP 5180 significantly promotes the growth of tomato seedlings under salt stress, as evidenced by increased fresh weight, lateral root number, and chlorophyll content. Physiological analyses show that VOCs exposure reduces oxidative damage and enhances antioxidant enzyme activity. Furthermore, elevated levels of total phenolics and flavonoids are detected, along with decreased sodium ion accumulation and an improved Na⁺/K⁺ ratio. Transcriptome analysis reveales that VOCs treatment upregulates genes associated with pathways involved in phenylpropanoid biosynthesis, glutathione metabolism, MAPK signaling, plant hormone signal transduction, and plant-pathogen interactions under saline conditions. VOCs also increase levels of endogenous auxin, jasmonic acid (JA), and 1-aminocyclopropane-1-carboxylic acid (ACC), while activating genes related to their respective signaling pathways. The salt tolerance enhancement mediated by VOCs is compromised by ethylene and JA inhibitors, suggesting that KLBMP 5180-derived VOCs improve tomato salt tolerance by stimulating ethylene synthesis and signal transduction. Additional VOCs profiling identifies several key bioactive compounds, including 3-methyl-1-butanol, phenylethyl alcohol, 2-aminopropanediamide, and 2-undecanone. These findings demonstrate that VOCs from G. halophytocola KLBMP 5180 enhance tomato growth under salt stress and advance our understanding of the role of actinomycetes in pronoting plant growth and mitigating salinity stress.

应用耐盐植物促生根瘤菌(PGPR)是缓解作物盐胁迫的一种有前景的策略。然而,放线菌挥发性有机化合物(VOCs)减轻盐度胁迫的机制尚不清楚。在本研究中,暴露于耐盐放线菌谷氨酰胺菌KLBMP 5180的挥发性有机化合物显著促进了盐胁迫下番茄幼苗的生长,表现为鲜重、侧根数和叶绿素含量的增加。生理分析表明,接触挥发性有机化合物可减少氧化损伤,增强抗氧化酶活性。此外,检测到总酚类物质和类黄酮含量升高,钠离子积累减少,Na + /K +比提高。转录组分析显示,在生理盐水条件下,VOCs处理上调了与苯丙素生物合成、谷胱甘肽代谢、MAPK信号传导、植物激素信号转导和植物与病原体相互作用相关的基因。VOCs还增加了内源性生长素、茉莉酸(JA)和1-氨基环丙烷-1-羧酸(ACC)的水平,同时激活了与它们各自信号通路相关的基因。乙烯和JA抑制剂抑制了VOCs对番茄耐盐性的增强,表明KLBMP 5180衍生的VOCs通过刺激乙烯合成和信号转导提高了番茄的耐盐性。额外的VOCs分析确定了几种关键的生物活性化合物,包括3-甲基-1-丁醇、苯乙醇、2-氨基丙二胺和2-十一烷酮。这些结果表明,盐藻KLBMP 5180释放的挥发性有机化合物促进了盐胁迫下番茄的生长,为我们进一步了解放线菌在促进植物生长和减轻盐胁迫中的作用提供了依据。
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引用次数: 0
Seed ageing increases the influence of native microorganisms on germination. 种子老化增加了原生微生物对发芽的影响。
IF 6.9 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2026-03-10 DOI: 10.1016/j.micres.2026.128493
Thomas Roach, Moritz Stegner, David Clara, Claudio G Ametrano, Stéphane Compant, Davide Gerna

Improper seed storage conditions, such as elevated temperature and moisture, accelerate ageing and compromise seed quality. However, the impacts of ageing on the seed microbiome and the resulting consequences for germination performance remain poorly understood. Here, we characterised how ageing soybean (Glycine max) seeds at 45 °C and 75% RH affects seed fungal communities, metabolism relevant to microbial growth, and sensitivity of germination to fungal challenge. Additionally, we assessed a role for endophytic bacteria in controlling pathogenic fungi. Amplicon sequencing revealed that ageing decreased fungal richness and reshaped community structure and composition of dominant taxa in seeds. Fusarium and Rhizopus isolates inhibited germination of non-aged seeds, whereas Sarocladium, Plectosphaerella, and Cladosporium impaired germination of aged seeds only. During imbibition, ageing increased seed metabolite leakage, including pinitol, glucose, and fructose, which promoted fungal growth in vitro. Among 39 endophytic bacteria previously isolated from soybean seeds, Bacillus toyonensis C55 and B. pumilus AM26 antagonised fungal growth, consistent with genomic regions associated with antifungal activity. Ageing oxidised the seed cellular redox state, and fungi tolerated oxidative growth conditions better than bacteria. In two cultivars, seed inoculation with B. toyonensis C55 increased germination, supporting a role in regulating fungal infections, whereas B. pumilus AM26 impaired germination. Notably, neither Bacillus strain affected germination of high-vigour non-aged seeds. Fluorescence in situ hybridisation microscopy revealed that both strains recolonised the seed endosphere following ageing. We conclude that oxidation during seed ageing contributes to increased sensitivity to fungal pathogens, which can be modulated by certain bacteria.

不适当的种子储存条件,如温度和湿度升高,加速老化,损害种子质量。然而,老化对种子微生物组的影响及其对发芽性能的影响仍然知之甚少。在这里,我们描述了在45°C和75% RH下老化的大豆(Glycine max)种子如何影响种子真菌群落、与微生物生长相关的代谢以及发芽对真菌挑战的敏感性。此外,我们评估了内生细菌在控制致病真菌中的作用。扩增子测序结果显示,衰老降低了真菌丰富度,重塑了种子中优势类群的群落结构和组成。镰刀菌和根霉对未老化种子的萌发有抑制作用,而芽孢菌、Plectosphaerella和枝孢菌仅对老化种子的萌发有抑制作用。在渗吸过程中,老化增加了种子代谢物泄漏,包括pinitol、葡萄糖和果糖,这促进了真菌在体外的生长。在先前从大豆种子中分离到的39种内生细菌中,toyonensis C55和B. pumilus AM26拮抗真菌生长,与抗真菌活性相关的基因组区域一致。衰老使种子细胞氧化还原状态氧化,真菌比细菌更能耐受氧化生长条件。在两个品种中,接种toyonensis C55提高了种子萌发,支持调节真菌感染的作用,而B. pumilus AM26则抑制了种子萌发。值得注意的是,两种芽孢杆菌菌株都不影响高活力非老化种子的萌发。荧光原位杂交显微镜显示,两种菌株在老化后都能在种子内球重新定殖。我们得出结论,种子老化过程中的氧化有助于增加对真菌病原体的敏感性,这可以由某些细菌调节。
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引用次数: 0
Regulatory effect of fadR on the inhibition of Aspergillus flavus infection of walnut kernels by Enterobacter ludwigii AA4 fadR对路德维希肠杆菌AA4对核桃仁黄曲霉侵染的抑制作用
IF 6.9 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2025-11-25 DOI: 10.1016/j.micres.2025.128402
Zhibo Yuan , Yibo Zan , Xu Li , Bin Lu , Yanjie Chao , Xinwu Xiong , Yanpo Yao , Di Wu , Ben Niu , Dong Pei
Mycotoxin contamination of nuts, frequently attributed to inappropriate storage, causes substantial economic losses and health concerns globally. Biological control using beneficial microorganisms has emerged as an environment friendly method for efficient mitigation of Aspergillus flavus pollution and consequent mycotoxin elimination in foodstuffs. Nevertheless, the exact mechanisms by which these biocontrol microbes protect nuts from this toxigenic fungus remain largely unknown. Using a fungal infection assay, we observed a remarkable inhibitory effect of Enterobacter ludwigii AA4 against the growth of A. flavus colonizing walnut kernels and aflatoxin B1 production. Mutant E. ludwigii AA4 strains, generated by genetically modifying five biofilm-related genes, notably fadR (which encodes a transcriptional regulator), exhibited significantly impaired biofilm development and reduced efficacy in suppressing A. flavus. These results indicated that biofilm establishment is indispensable for the inhibitory effect of E. ludwigii AA4 against A. flavus. We further investigated the kernel colonization of fadR knockout mutant, which exhibited the most pronounced reduction in biofilm formation, via colony counting and laser scanning confocal microscopy. We found that fadR contributed to the suppression of A. flavus by influencing bacterial biofilm production and kernel settlement. Gene expression analysis and site-directed mutagenesis revealed that fadR modulated biofilm development by negatively regulating the transcription of rcsA, an auxiliary protein gene within the Rcs phosphorelay system, potentially by influencing acetyl phosphate-mediated RcsB phosphorylation. These findings highlight the potential of AA4 in the biological control of A. flavus contamination in walnut kernels.
坚果的霉菌毒素污染通常归因于储存不当,在全球造成重大经济损失和健康问题。利用有益微生物进行生物防治已成为一种有效减轻食品中黄曲霉污染和随之消除霉菌毒素的环境友好型方法。然而,这些生物防治微生物保护坚果免受这种产毒真菌侵害的确切机制在很大程度上仍然未知。通过真菌感染实验,我们观察到路德维希肠杆菌AA4对黄曲霉定殖核桃仁的生长和黄曲霉毒素B1的产生有显著的抑制作用。通过基因修饰5个生物膜相关基因(尤其是编码转录调控因子的fadR)而产生的突变株ludwigii AA4,其生物膜发育明显受损,抑制黄曲霉的效果降低。这些结果表明,生物膜的建立是路德维希菌AA4对黄曲霉产生抑制作用的必要条件。我们通过菌落计数和激光扫描共聚焦显微镜进一步研究了fadR敲除突变体的内核定植,该突变体表现出最明显的生物膜形成减少。我们发现,fadR通过影响细菌生物膜的生成和果仁沉降来抑制黄曲霉的生长。基因表达分析和位点定向诱变表明,fadR通过负调控Rcs磷酸化接力系统中的辅助蛋白基因rcsA的转录,可能通过影响乙酰磷酸介导的RcsB磷酸化来调节生物膜的发育。这些发现突出了AA4在生物防治黄曲霉污染核桃仁中的潜力。
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引用次数: 0
Trichoderma bio-organic fertilizer modulates the rhizosphere microbiome and Bacillus-assisted plant hormone regulation to promote pear rootstock growth 木霉生物有机肥调节根际微生物群和芽孢杆菌辅助植物激素调节促进梨砧木生长
IF 6.9 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2025-11-21 DOI: 10.1016/j.micres.2025.128400
Peigen Li , Yujie Shi , Yujie Zhao , Xiaotong Lu , Jingtao Duan , Qingsong Yang , Yangchun Xu , Xiaogang Li , Caixia Dong , Zhonghua Wang , Qirong Shen
Growth of container-grown Pyrus calleryana is often containered in heavy clay soils. Trichoderma-based bio-organic fertilizer (BOF) can improve seedling performance, yet how BOF mobilizes microbiome-hormone interactions under such conditions remains unclear. Here, we conducted a pot experiment with three treatments— water control (CK), 10 % (v/v) BOF and 20 % (v/v) BOF—under controlled conditions to assess plant growth, root hormone profiles, and rhizosphere communities. With 20 % BOF, seedling height, root length and root biomass increased (up to +131 %, +160 % and +165 %), bacterial diversity rose, and Firmicutes/Actinobacteria were enriched with an 8.3-fold increase of Bacillus. The ferment filtrates supported growth of the isolated Bacillus. Across treatments, Bacillus abundance correlated positively with indole-3-acetic acid (IAA) and isopentenyladenine (IP) and negatively with abscisic acid (ABA) (P < 0.05). Consistently, co-inoculation of Trichoderma and Bacillus increased IAA/IP and reduced ABA (P < 0.05), yielding stronger growth responses than single inoculations. These findings outline a BOF-mediated path in which Trichoderma-guided microbiome restructuring, together with a Trichoderma-responsive Bacillus, rebalances IAA/IP/ABA and promotes pear rootstock growth.
容器生长的梨在重质粘土中生长。基于木霉的生物有机肥(BOF)可以提高幼苗性能,但BOF如何在这种条件下调动微生物-激素相互作用尚不清楚。本研究采用盆栽试验方法,在控制条件下,采用水分控制(CK)、10 % (v/v) BOF和20 % (v/v) BOF三种处理,对植物生长、根激素分布和根际群落进行了评价。当BOF为20 %时,幼苗高、根长和根生物量增加(分别为+131 %、+160 %和+165 %),细菌多样性增加,其中厚壁菌门/放线菌门数量增加8.3倍。发酵滤液支持分离的芽孢杆菌生长。芽孢杆菌丰度与吲哚-3-乙酸(IAA)和异戊烯腺嘌呤(IP)呈正相关,与脱落酸(ABA)呈负相关(P <; 0.05)。同样,木霉和芽孢杆菌共接种提高了IAA/IP,降低了ABA (P <; 0.05),比单独接种产生更强的生长反应。这些发现概述了一种由bof介导的途径,其中木霉引导的微生物组重组与木霉响应芽孢杆菌一起,重新平衡IAA/IP/ABA并促进梨砧木生长。
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引用次数: 0
Genomic and functional analysis of Pseudomonas protegens CS11 reveals multifaceted biocontrol mechanisms against Sclerotinia sclerotiorum via antifungal metabolites, root colonisation and plant defence induction in tomato 假单胞菌蛋白CS11的基因组和功能分析揭示了番茄菌核病的多重生物防治机制,包括抗真菌代谢产物、根定植和植物防御诱导
IF 6.9 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2025-11-19 DOI: 10.1016/j.micres.2025.128399
Aida Nabila Rahim , Gwo Rong Wong , Kah Ooi Chua , Kausalyaa Kaliapan , Jennifer Ann Harikrishna , Siah Ying Tang , Bey Hing Goh , Purabi Mazumdar
Sclerotinia sclerotiorum is one of many fungal pathogens that threaten global crop production. Antagonistic rhizobacteria have emerged as promising eco-friendly alternatives to synthetic pesticides that can be deployed for effective and sustainable management of the fungal disease. From 60 rhizobacterial strains isolated in this study, eight were able to inhibit the in vitro growth of S. sclerotiorum. Among these, strain CS11 exhibited complete (100 %) inhibition and demonstrated multiple plant growth-promoting traits, including siderophore production, nitrogen assimilation, phosphate solubilisation, and lytic enzyme activity. Motility and root colonisation assays confirmed CS11 to have high motility and efficient rhizosphere establishment. Molecular identification using 16S rRNA sequencing and Multi-locus sequence analysis identified CS11 as Pseudomonas protegens. Whole-genome sequencing revealed gene clusters for key antifungal metabolites, including 2,4-diacetylphloroglucinol, pyoluteorin, pyrrolnitrin, hydrogen cyanide, and orfamides, widely associated with Pseudomonas spp. Although closely related to P. protegens CHA0, CS11 has additional coding sequences associated with protease production (thermostable alkaline protease), root colonisation (cyclic di-GMP phosphodiesterase), and rhizosphere fitness (quorum-sensing-related genes), highlighting its novelty and strong biocontrol potential. In greenhouse trials, treatment of S. sclerotiorum-infected tomato plants with CS11 led to complete suppression of disease progression and significantly enhanced plant height and chlorophyll content. Compared to untreated infected plants, CS11-treated plants had elevated GLU, Chi, PAL, and PPO activities, and RT-qPCR analysis demonstrated upregulation of salicylic acid (PR1, PR2, PR5) and jasmonic acid (PR3, PR4, PDF1.2, VSP2) pathway genes. Collectively, these findings establish P. protegens CS11 as a promising candidate for the development of biopesticides to control fungal pathogens and enhance plant defence.
菌核菌是威胁全球作物生产的众多真菌病原体之一。拮抗根瘤菌已成为合成农药的有前途的环保替代品,可用于有效和可持续的真菌疾病管理。从本研究分离的60株根瘤菌中,有8株能够抑制菌核葡萄球菌的体外生长。其中,菌株CS11表现出完全抑制作用(100% %),并表现出多种促进植物生长的性状,包括铁载体产生、氮同化、磷酸盐溶解和裂解酶活性。运动性和根定植试验证实CS11具有高运动性和有效的根际建立。通过16S rRNA测序和多位点序列分析,鉴定CS11为假单胞菌蛋白。全基因组测序揭示了关键抗真菌代谢物的基因簇,包括2,4-二乙酰间苯三酚、pyoluteorin、pyrrolnitrin、氰化氢和orfamides,它们与假单胞菌广泛相关。尽管与P. protegens CHA0密切相关,CS11还具有与蛋白酶产生(耐热碱性蛋白酶)、根定植(环二gmp磷酸二酯酶)和根际适应性(群体感知相关基因)相关的额外编码序列。突出其新颖性和强大的生物防治潜力。在温室试验中,用CS11处理菌核葡萄球菌感染的番茄植株,可以完全抑制疾病进展,显著提高植株高度和叶绿素含量。与未处理的植物相比,cs11处理的植物GLU、Chi、PAL和PPO活性升高,RT-qPCR分析显示水杨酸(PR1、PR2、PR5)和茉莉酸(PR3、PR4、PDF1.2、VSP2)途径基因上调。总之,这些发现确定了P. protegens CS11是开发生物农药的一个有希望的候选者,以控制真菌病原体和增强植物防御。
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引用次数: 0
Faecalibacterium prausnitzii suppresses ovarian cancer by inducing ferroptosis via phenylalanine metabolism activation prausnitzii粪杆菌通过苯丙氨酸代谢激活诱导铁下垂抑制卵巢癌
IF 6.9 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2025-09-14 DOI: 10.1016/j.micres.2025.128342
Kaiyue Ding , Yuexue Huo , Kangzhe Fu , Yingting Chen , Lunyue Xia , Junhao Zhan , Jiahua Liu , Jiayu Liu , Yudi Liu , Mingyang Zhang , Xingchen Wu , HyokChol Choe , Danping Zhao , Junnan Ma , Chunmei Dai , Zhenlong Yu , Yulin Peng , Xiaochi Ma , Lin Zhang
Ovarian cancer (OC) is a highly lethal gynecologic malignancy characterized by limited availability of treatment options and frequent recurrence. The gut microbiota has emerged as a key regulator of tumor progression; however, the anticancer potential of individual probiotic species remains insufficiently characterized and warrants further investigation. Ferroptosis is a regulated iron-dependent cell death with therapeutic potential in cancer. In this study, we initially observed that the traditional herbal pair, Scutellaria barbata D. Don (SB) and Scleromitrion diffusum (Wild) R.J. Wang (SD) exerted antitumor effects in a mouse model of OC, which was accompanied by a marked increase in the abundance of Faecalibacterium prausnitzii (F.prausnitzii) — a beneficial commensal bacterium not previously associated with cancer or ferroptosis. This observation prompted us to explore the functional role of F.prausnitzii in OC and revealed that it significantly suppressed ovarian tumor growth both in vitro and in vivo. Mechanistically, F.prausnitzii treatment elevated Fe²⁺ levels, increased lipid peroxidation, and depleted glutathione (GSH), which are hallmarks of ferroptosis. Transcriptomic analysis of tumor tissues from F.prausnitzii-treated mice identified ferroptosis and metal ion homeostasis pathways as major regulatory networks. Furthermore, metabolomic profiling revealed the activation of phenylalanine metabolism and increased production of phenylacetylglutamine (PAGln), suggesting a microbiota-metabolite axis contributing to ferroptosis induction. Our findings reveal that F.prausnitzii represents a novel ferroptosis-inducing probiotic with potent antitumor activity in OC. This study reveals a previously unrecognized role for this gut commensal and provides a mechanistic basis for the development of microbiota-based, ferroptosis-targeted therapeutic strategies in oncology.
卵巢癌(OC)是一种高度致命的妇科恶性肿瘤,其特点是治疗选择有限,复发频繁。肠道微生物群已成为肿瘤进展的关键调节因子;然而,单个益生菌物种的抗癌潜力仍然不够充分,需要进一步研究。铁下垂是一种受调节的铁依赖性细胞死亡,具有治疗癌症的潜力。在这项研究中,我们最初观察到传统的草药对,黄芩(Scutellaria barbata D. Don, SB)和弥漫性白僵菌(scleroomitrion diffusum, Wild) R.J. Wang (SD)在OC小鼠模型中发挥抗肿瘤作用,同时伴随着Faecalibacterium prausnitzii (f.p prausnitzii)丰度的显著增加,Faecalibacterium prausnitzii是一种有益的共生细菌,以前与癌症或铁中毒无关。这一观察结果促使我们探索F.prausnitzii在卵巢癌中的功能作用,并发现其在体外和体内均能显著抑制卵巢肿瘤的生长。在机制上,F.prausnitzii处理升高了Fe 2 +水平,增加了脂质过氧化和谷胱甘肽(GSH)的消耗,这些都是铁死亡的标志。通过对prausnitzii治疗小鼠肿瘤组织的转录组学分析,发现铁凋亡和金属离子稳态通路是主要的调控网络。此外,代谢组学分析显示苯丙氨酸代谢的激活和苯乙酰谷氨酰胺(PAGln)的产生增加,表明微生物代谢轴有助于诱导铁下垂。我们的研究结果表明,F.prausnitzii是一种新的诱导铁中毒的益生菌,在OC中具有很强的抗肿瘤活性。这项研究揭示了这种肠道共生体以前未被认识到的作用,并为开发基于微生物群的肿瘤中以铁中毒为目标的治疗策略提供了机制基础。
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引用次数: 0
Genome-centric culture-enriched metagenomics reveals temperature-driven reassembly and functional stratification in culturable desert soil bacteria 以基因组为中心的培养富集元基因组学揭示了可培养沙漠土壤细菌的温度驱动重组和功能分层。
IF 6.9 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2025-11-29 DOI: 10.1016/j.micres.2025.128411
Shuai Li , Xin-Ran Wang , Jia-Rui Han , Wen-Hui Lian , Mukhtiar Ali , Yong-Hong Liu , Jun Liu , Jie Huang , Huan-Huan He , Rajivgandhi Govindan , Osama Abdalla Abdelshafy Mohamad , Bao-Zhu Fang , Lei Dong , Wen-Jun Li
Desert ecosystems cover nearly one-third of Earth’s land surface and face rising temperatures and climatic variability. Soil microbiomes underpin biogeochemical cycling and ecosystem resilience in these arid landscapes, yet the genome-resolved temperature responses of their culturable fraction remain poorly understood. Here, we employed genome-centric culture-enriched metagenomics (CE-MGS) to rhizosphere and bulk desert soils from the Gurbantunggut Desert incubated at 15°C, 30°C, and 45°C. From 90 culture-enriched metagenomes, we reconstructed 1184 cultivated metagenome-assembled genomes (cMAGs), including 218 putative novel genomospecies across 73 bacterial genera, substantially expanding the genomic representation of desert bacteria. Temperature influenced both community composition and interactions, with Actinomycetota, Pseudomonadota, and Bacillota dominating at 15°C, 30°C, and 45°C, respectively. Co-occurrence networks showed that lower temperatures and rhizosphere soils supported more interconnected consortia of culturable bacteria and that key hub taxa shifted across thermal regimes, reflecting temperature-driven reorganization of interactions within the culturable microbial community. Functional profiling revealed that temperature selected for specialized taxa, with elevated temperatures favoring redox-efficient pathways and more energy-efficient resource use. While representing only the culturable fraction of desert soil microbiomes, CE-MGS enables genome reconstruction of experimentally tractable microbes, linking identity, function, and thermal adaptation. These results provide a genome-resolved view of temperature responses, extend understanding of desert microbial adaptation beyond previous culture-independent studies, and establish CE-MGS as a practical approach to access ecologically relevant microbes for conservation and biotechnological applications under a warming climate.
沙漠生态系统覆盖了地球近三分之一的陆地表面,面临着不断上升的温度和气候变化。在这些干旱景观中,土壤微生物组支撑着生物地球化学循环和生态系统的恢复能力,但对其可培养部分的基因组解析温度响应仍然知之甚少。在此,我们对古尔班通古特沙漠根际土壤和大块沙漠土壤在15°C、30°C和45°C的条件下进行了以基因组为中心的培养富集宏基因组学(CE-MGS)研究。从90个培养富集的宏基因组中,我们重建了1184个培养的宏基因组组装基因组(cMAGs),包括218个假定的新基因组种,跨越73个细菌属,大大扩展了沙漠细菌的基因组代表性。温度对群落组成和相互作用都有影响,在15°C、30°C和45°C时,放线菌门、假单胞菌门和芽孢杆菌门分别占主导地位。共生网络表明,较低的温度和根际土壤支持更多相互关联的可培养细菌群落,关键的枢纽类群在不同的热状态下转移,反映了温度驱动的可培养微生物群落内部相互作用的重组。功能分析表明,温度对特定类群有选择性,温度升高有利于氧化还原高效途径和更节能的资源利用。虽然仅代表沙漠土壤微生物组的可培养部分,但CE-MGS使实验可处理微生物的基因组重建成为可能,将身份,功能和热适应联系起来。这些结果提供了一个基因组解析的温度响应视图,扩展了对沙漠微生物适应的理解,超越了以前的培养独立研究,并建立了CE-MGS作为一种实用的方法,在气候变暖的情况下获取生态相关微生物,用于保护和生物技术应用。
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引用次数: 0
Disentangling the molecular mechanisms of disease suppression by endophytic Flavobacterium sp. 98 内生黄杆菌抑制疾病的分子机制研究[j]
IF 6.9 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2026-03-01 Epub Date: 2025-12-06 DOI: 10.1016/j.micres.2025.128415
Xinya Pan , Somayah S. Elsayed , Gilles P. van Wezel , Jos M. Raaijmakers , Víctor J. Carrión
Endophytic microorganisms colonize internal plant tissues and enhance host resistance to pathogens. We previously showed that endophytic Flavobacterium sp. 98 (Fl98) protects sugar beet against the fungal root pathogen Rhizoctonia solani via biosynthetic gene cluster 298 (BGC298). However, the molecular mechanisms underlying this protection remained poorly understood. Here, comparative metabolomic analyses revealed that knockout of BGC298 led to reduced production of the antifungal compound 5,6-dimethylbenzimidazole (DMB) in Fl98. We hypothesized that BGC298 is involved in regulating DMB biosynthesis and therefore contributes to Fl98’s disease suppression as a novel protective mechanism. Subsequent site-directed mutagenesis of the DMB-synthase gene bluB abolished DMB production by Fl98, and both ΔBGC298 and ΔbluB mutants were compromised in protecting sugar beet seedlings in greenhouse bioassays. Bioinformatic analyses further indicated that bluB is widespread across Flavobacterium, while BGC298 is limited to a small subset of plant-associated strains. Together, our findings highlight the pivotal role of BGC298 and DMB biosynthesis in plant protection by endophytic Flavobacterium sp. 98.
内生微生物定植于植物内部组织,增强寄主对病原体的抵抗力。我们先前发现内生黄杆菌sp. 98 (Fl98)通过生物合成基因簇298 (BGC298)保护甜菜免受真菌根病原体索拉根丝核菌的侵害。然而,这种保护的分子机制仍然知之甚少。比较代谢组学分析显示,敲除BGC298导致Fl98中抗真菌化合物5,6-二甲基苯并咪唑(DMB)的产生减少。我们推测BGC298参与调控DMB的生物合成,从而作为一种新的保护机制参与Fl98的疾病抑制。随后对DMB合成酶基因bluB进行定点诱变,使Fl98无法产生DMB,并且在温室生物试验中,ΔBGC298和ΔbluB突变体在保护甜菜幼苗方面都受到了损害。生物信息学分析进一步表明,bluB在黄杆菌中广泛存在,而BGC298仅限于植物相关菌株的一小部分。总之,我们的发现强调了BGC298和DMB生物合成在内生黄杆菌sp. 98植物保护中的关键作用。
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引用次数: 0
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Microbiological research
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