首页 > 最新文献

Modern Pathology最新文献

英文 中文
Regulatory Aspects of Artificial Intelligence and Machine Learning 人工智能-ML 的监管问题。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-09-12 DOI: 10.1016/j.modpat.2024.100609
Liron Pantanowitz , Matthew Hanna , Joshua Pantanowitz , Joe Lennerz , Walter H. Henricks , Peter Shen , Bruce Quinn , Shannon Bennet , Hooman H. Rashidi
In the realm of health care, numerous generative and nongenerative artificial intelligence and machine learning (AI-ML) tools have been developed and deployed. Simultaneously, manufacturers of medical devices are leveraging AI-ML. However, the adoption of AI in health care raises several concerns, including safety, security, ethical biases, accountability, trust, economic impact, and environmental effects. Effective regulation can mitigate some of these risks, promote fairness, establish standards, and advocate for more sustainable AI practices. Regulating AI tools not only ensures their safe and effective adoption but also fosters public trust. It is important that regulations remain flexible to accommodate rapid advances in this field to support innovation and also not to add additional burden to some of our preexisting and well-established frameworks. This study covers regional and global regulatory aspects of AI-ML including data privacy, software as a medical device, agency approval and clearance pathways, reimbursement, and laboratory-developed tests.
在医疗保健领域,已经开发和部署了大量生成式和非生成式人工智能和机器学习(AI-ML)工具。与此同时,医疗设备制造商也在利用 AI-ML。然而,在医疗保健领域采用人工智能会引发一些问题,包括安全、安保、道德偏见、问责、信任、经济影响和环境影响。有效的监管可以降低其中一些风险,促进公平,建立标准,并倡导更可持续的人工智能实践。对人工智能工具进行监管不仅能确保其安全有效地应用,还能促进公众信任。重要的是,监管应保持灵活性,以适应该领域的快速发展,从而支持创新,同时也不给我们现有的一些完善框架增加额外负担。本文涉及人工智能医疗的地区和全球监管方面,包括数据隐私、软件即医疗设备(SaMD)、机构审批和许可途径、报销和实验室开发测试(LDTs)。
{"title":"Regulatory Aspects of Artificial Intelligence and Machine Learning","authors":"Liron Pantanowitz ,&nbsp;Matthew Hanna ,&nbsp;Joshua Pantanowitz ,&nbsp;Joe Lennerz ,&nbsp;Walter H. Henricks ,&nbsp;Peter Shen ,&nbsp;Bruce Quinn ,&nbsp;Shannon Bennet ,&nbsp;Hooman H. Rashidi","doi":"10.1016/j.modpat.2024.100609","DOIUrl":"10.1016/j.modpat.2024.100609","url":null,"abstract":"<div><div>In the realm of health care, numerous generative and nongenerative artificial intelligence and machine learning (AI-ML) tools have been developed and deployed. Simultaneously, manufacturers of medical devices are leveraging AI-ML. However, the adoption of AI in health care raises several concerns, including safety, security, ethical biases, accountability, trust, economic impact, and environmental effects. Effective regulation can mitigate some of these risks, promote fairness, establish standards, and advocate for more sustainable AI practices. Regulating AI tools not only ensures their safe and effective adoption but also fosters public trust. It is important that regulations remain flexible to accommodate rapid advances in this field to support innovation and also not to add additional burden to some of our preexisting and well-established frameworks. This study covers regional and global regulatory aspects of AI-ML including data privacy, software as a medical device, agency approval and clearance pathways, reimbursement, and laboratory-developed tests.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"37 12","pages":"Article 100609"},"PeriodicalIF":7.1,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142291430","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
p53 Abnormal Oral Epithelial Dysplasias are Associated With High Risks of Progression and Local Recurrence—A Retrospective Study in a Longitudinal Cohort p53异常口腔上皮增生异常与病情恶化和局部复发的高风险有关--一项纵向队列的回顾性研究。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-09-10 DOI: 10.1016/j.modpat.2024.100613
Yen Chen Kevin Ko , Kelly Yi Ping Liu , Esther Chen , Sarah Yuqi Zhu , Catherine F. Poh
Grading of oral epithelial dysplasia (OED) can be challenging with considerable intraobserver and interobserver variability. Abnormal immunohistochemical staining patterns of the tumor suppressor protein, p53, have been recently shown to be potentially associated with progression in OED. We retrospectively identified 214 oral biopsies from 203 patients recruited in a longitudinal study between 2001 and 2008 with a diagnosis of reactive, nondysplastic lesions, low-grade lesions (mild OED and moderate OED) and high-grade lesions (HGLs; severe OED/carcinoma in situ). Tissue microarrays were constructed from the most representative area of the pathology. Three consecutive sections were sectioned and stained for hematoxylin and eosin, p53 immunohistochemistry, and p16 immunohistochemistry. The staining results were reviewed by 2 pathologists (Y.C.K.K., C.F.P.) blinded to clinical outcome. Samples were categorized into p53 abnormal OED (n = 46), p53 conventional OED (n = 118), and p53 human papillomavirus (HPV) OED (HPV associated) (n = 12) using a previously published pattern-based approach. All cases of p53 HPV OED (HPV associated) were identified in HGLs. In contrast, cases of p53 abnormal OED were observed in mild OED (9.5%), moderate OED (23%), and severe OED/carcinoma in situ (51%). None of the 27 reactive or nondysplastic lesions showed abnormal p53 staining patterns. Among the 135 low-grade lesions, 23 cases (17.0%; 2 mild OEDs and 21 moderate OEDs) progressed to HGL or squamous cell carcinoma, with 11 cases showing progression within the first 3 years. Remarkably, 82% (9/11) of these faster progressors showed abnormal p53 patterns. Survival analysis revealed that p53 abnormal OED had significantly poorer progression-free probability (P < .0001) with hazard ratio of 11.24 (95% CI, 4.26-29.66) compared with p53 conventional OED. Furthermore, p53 abnormal OED had poorer local recurrence–free survival compared with p53 wild-type OED (P = .03). The study supports that OED with p53 abnormal pattern is at high risk for progression and recurrence independent of the dysplasia grade.
口腔上皮发育不良(OED)的分级具有挑战性,观察者内部和观察者之间的差异很大。最近的研究表明,肿瘤抑制蛋白 p53 的异常免疫组化染色模式可能与 OED 的进展有关。我们回顾性地鉴定了 2001 年至 2008 年间一项纵向研究招募的 203 名患者的 214 份口腔活检样本,诊断为反应性、非增生性病变、低级别病变(LGLs;轻度 OED、中度 OED)和高级别病变(HGLs;重度 OED/原位癌)。组织微阵列(TMA)由最具代表性的病理区域构建而成。对三个连续切片进行切片,并进行苏木精和伊红染色、p53 免疫组化和 p16 免疫组化。染色结果由两名对临床结果保密的病理学家进行审核。采用之前发表的基于模式的方法,将样本分为p53-异常OED(n = 46)、p53-常规OED(n = 118)和p53-HPV(HPV相关)OED(n = 12)。所有p53-HPV(HPV相关)OED病例都是在HGLs中发现的。相比之下,p53异常的OED病例出现在轻度OED(9.5%)、中度OED(23%)和重度OED/原位癌(51%)中。27个反应性或非增生性病变中没有一个显示出异常的p53染色模式。在135例LGL中,23例(17.0%;2例轻度OED和21例中度OED)进展为HGL或鳞癌,其中11例在最初3年内出现进展。值得注意的是,在这些进展较快的病例中,82%(9/11)的病例显示出异常的 p53 模式。生存期分析表明,p53异常的OED的无进展概率明显较低(p
{"title":"p53 Abnormal Oral Epithelial Dysplasias are Associated With High Risks of Progression and Local Recurrence—A Retrospective Study in a Longitudinal Cohort","authors":"Yen Chen Kevin Ko ,&nbsp;Kelly Yi Ping Liu ,&nbsp;Esther Chen ,&nbsp;Sarah Yuqi Zhu ,&nbsp;Catherine F. Poh","doi":"10.1016/j.modpat.2024.100613","DOIUrl":"10.1016/j.modpat.2024.100613","url":null,"abstract":"<div><div>Grading of oral epithelial dysplasia (OED) can be challenging with considerable intraobserver and interobserver variability. Abnormal immunohistochemical staining patterns of the tumor suppressor protein, p53, have been recently shown to be potentially associated with progression in OED. We retrospectively identified 214 oral biopsies from 203 patients recruited in a longitudinal study between 2001 and 2008 with a diagnosis of reactive, nondysplastic lesions, low-grade lesions (mild OED and moderate OED) and high-grade lesions (HGLs; severe OED/carcinoma in situ). Tissue microarrays were constructed from the most representative area of the pathology. Three consecutive sections were sectioned and stained for hematoxylin and eosin, p53 immunohistochemistry, and p16 immunohistochemistry. The staining results were reviewed by 2 pathologists (Y.C.K.K., C.F.P.) blinded to clinical outcome. Samples were categorized into p53 abnormal OED (n = 46), p53 conventional OED (n = 118), and p53 human papillomavirus (HPV) OED (HPV associated) (n = 12) using a previously published pattern-based approach. All cases of p53 HPV OED (HPV associated) were identified in HGLs. In contrast, cases of p53 abnormal OED were observed in mild OED (9.5%), moderate OED (23%), and severe OED/carcinoma in situ (51%). None of the 27 reactive or nondysplastic lesions showed abnormal p53 staining patterns. Among the 135 low-grade lesions, 23 cases (17.0%; 2 mild OEDs and 21 moderate OEDs) progressed to HGL or squamous cell carcinoma, with 11 cases showing progression within the first 3 years. Remarkably, 82% (9/11) of these faster progressors showed abnormal p53 patterns. Survival analysis revealed that p53 abnormal OED had significantly poorer progression-free probability (<em>P</em> &lt; .0001) with hazard ratio of 11.24 (95% CI, 4.26-29.66) compared with p53 conventional OED. Furthermore, p53 abnormal OED had poorer local recurrence–free survival compared with p53 wild-type OED (<em>P</em> = .03). The study supports that OED with p53 abnormal pattern is at high risk for progression and recurrence independent of the dysplasia grade.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"37 12","pages":"Article 100613"},"PeriodicalIF":7.1,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142291428","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Abnormal p53 Immunohistochemical Patterns Are Associated with Regional Lymph Node Metastasis in Oral Cavity Squamous Cell Carcinoma at Time of Surgery p53 免疫组化模式异常与口腔鳞状细胞癌手术时的区域淋巴结转移有关
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-09-10 DOI: 10.1016/j.modpat.2024.100614
Tami Yu-Yu Lin , Kelly Yi Ping Liu , Rachel Novack , Pushwant S. Mattu , Tony L. Ng , Lynn N. Hoang , Eitan Prisman , Catherine F. Poh , Yen Chen Kevin Ko
Most (60%-80%) of the oral cavity invasive squamous cell carcinoma (OSCC) demonstrate molecular alterations in TP53. The presence of TP53 mutations in multiple organ systems has been associated with a more aggressive clinical course. This study aimed to classify OSCC into p53 wild-type OSCC and p53-abnormal OSCC using p53 immunohistochemistry and to determine if abnormal p53 status correlates with a higher risk of lymph node metastasis at the time of surgery. A total of 101 patients with OSCC resection and cervical lymph node dissection were identified. p53 immunohistochemistry was performed for all cases and scored into p53 wild-type (p53-HPV: midepithelial/basal sparing, markedly reduced [null-like]/basal sparing; p53-conventional: scattered basal, patchy basal/parabasal) and p53-abnormal (overexpression basal/parabasal only, overexpression basal/parabasal to diffuse, null, and cytoplasmic) patterns. p16 immunohistochemistry and high-risk HPV RNA in situ hybridization were used to confirm the HPV status in cases showing midepithelial/basal sparing or markedly reduced (null-like)/basal sparing pattern. Logistic regression analysis was performed to investigate the association of p53 status, tumor size, depth of invasion, and pT stage against lymph node status. We identified 22 cases with p53 wild-type patterns (16 p53-conventional, 6 p53-HPV) and 79 cases with p53-abnormal patterns. Two of 22 p53 wild-type cases had positive lymph nodes (1 p53-conventional, 1 p53-HPV), whereas 40 of 79 p53-abnormal cases had positive lymph nodes (P < .001). Multivariate analysis showed that p53-abnormal pattern was an independent risk factor associated with positive node(s) with an odds ratio of 8.12 (95% CI, 2.10-53.78; P = .008).
p53-Abnormal OSCCs were significantly more likely to be associated with positive lymph node status than p53 wild-type OSCCs at the time of surgery. Further investigation with long-term follow-up is required to determine its clinical application before surgery planning.
简介:60%至80%的口腔浸润性鳞状细胞癌(OSCC)显示出TP53的分子改变。在多个器官系统中出现 TP53 突变与更具侵袭性的临床病程有关。本研究的目的是利用p53免疫组化将OSCC分为p53野生型OSCC和p53异常型OSCC,并确定p53异常状态是否与手术时淋巴结转移的较高风险相关:共确定了101例接受OSCC切除术和颈淋巴结清扫术的患者。对所有病例进行p53免疫组化,并将其分为p53野生型(p53-HPV:中上皮/基底疏松、明显减少[无效样]/基底疏松;p53-常规:散在基底、斑片状基底/副基底)和p53异常型(仅基底/副基底过表达、基底/副基底过表达至弥漫、无效、胞质)。p16 免疫组化和高危 HPV RNA 原位杂交用于确认表现为中上皮/基底疏松或明显减少(无效样)/基底疏松模式的病例的 HPV 状态。我们进行了逻辑回归分析,研究 p53 状态、肿瘤大小、浸润深度和 pT 分期与淋巴结状态的关系:我们发现了 22 例 p53 野生型病例(16 例 p53 传统型,6 例 p53-HPV 型)和 79 例 p53 异常型病例。22例p53野生型病例中有2例淋巴结阳性(1例p53常规型,1例p53-HPV型),而79例p53异常型病例中有40例淋巴结阳性(p结论:与p53野生型OSCC相比,手术时p53异常型OSCC淋巴结阳性的可能性明显更高。需要进一步进行长期随访调查,以确定其在手术规划前的临床应用。
{"title":"Abnormal p53 Immunohistochemical Patterns Are Associated with Regional Lymph Node Metastasis in Oral Cavity Squamous Cell Carcinoma at Time of Surgery","authors":"Tami Yu-Yu Lin ,&nbsp;Kelly Yi Ping Liu ,&nbsp;Rachel Novack ,&nbsp;Pushwant S. Mattu ,&nbsp;Tony L. Ng ,&nbsp;Lynn N. Hoang ,&nbsp;Eitan Prisman ,&nbsp;Catherine F. Poh ,&nbsp;Yen Chen Kevin Ko","doi":"10.1016/j.modpat.2024.100614","DOIUrl":"10.1016/j.modpat.2024.100614","url":null,"abstract":"<div><div>Most (60%-80%) of the oral cavity invasive squamous cell carcinoma (OSCC) demonstrate molecular alterations in <em>TP53</em>. The presence of <em>TP53</em> mutations in multiple organ systems has been associated with a more aggressive clinical course. This study aimed to classify OSCC into p53 wild-type OSCC and p53-abnormal OSCC using p53 immunohistochemistry and to determine if abnormal p53 status correlates with a higher risk of lymph node metastasis at the time of surgery. A total of 101 patients with OSCC resection and cervical lymph node dissection were identified. p53 immunohistochemistry was performed for all cases and scored into p53 wild-type (p53-HPV: midepithelial/basal sparing, markedly reduced [null-like]/basal sparing; p53-conventional: scattered basal, patchy basal/parabasal) and p53-abnormal (overexpression basal/parabasal only, overexpression basal/parabasal to diffuse, null, and cytoplasmic) patterns. p16 immunohistochemistry and high-risk HPV RNA in situ hybridization were used to confirm the HPV status in cases showing midepithelial/basal sparing or markedly reduced (null-like)/basal sparing pattern. Logistic regression analysis was performed to investigate the association of p53 status, tumor size, depth of invasion, and pT stage against lymph node status. We identified 22 cases with p53 wild-type patterns (16 p53-conventional, 6 p53-HPV) and 79 cases with p53-abnormal patterns. Two of 22 p53 wild-type cases had positive lymph nodes (1 p53-conventional, 1 p53-HPV), whereas 40 of 79 p53-abnormal cases had positive lymph nodes (<em>P</em> &lt; .001). Multivariate analysis showed that p53-abnormal pattern was an independent risk factor associated with positive node(s) with an odds ratio of 8.12 (95% CI, 2.10-53.78; <em>P</em> = .008).</div><div>p53-Abnormal OSCCs were significantly more likely to be associated with positive lymph node status than p53 wild-type OSCCs at the time of surgery. Further investigation with long-term follow-up is required to determine its clinical application before surgery planning.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"37 12","pages":"Article 100614"},"PeriodicalIF":7.1,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142291426","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unraveling the Molecular Landscape of Uterine Tumor Resembling Ovarian Sex Cord Tumor: Insights From A Clinicopathological, Morphologic, Immunohistochemical, and Molecular Analysis of 35 Cases 揭开 UTROSCT 分子图谱:对 35 例病例进行临床病理学、形态学、免疫组化和分子分析的启示。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-09-10 DOI: 10.1016/j.modpat.2024.100611
Miroslava Flídrová , Nikola Hájková , Jan Hojný , Jiří Dvořák , Romana Michálková , Eva Krkavcová , Jan Laco , W. Glenn McCluggage , Giovanna Giordano , Enrico Maria Silini , Květoslava Michalová , Magdalena Bizoń , Kristýna Němejcová , Pavel Dundr , Michaela Kendall Bártů
Uterine tumor resembling ovarian sex cord tumor (UTROSCT) is a rare tumor of uncertain lineage and low malignant potential. Most tumors behave in a benign manner, but a subset of UTROSCT exhibit an aggressive clinical course with recurrences and metastases. The recurrent molecular alterations in UTROSCT mostly represent gene fusions involving NCOA1-3. We performed a comprehensive clinicopathological, morphologic, immunohistochemical, and molecular analysis on a cohort of 35 UTROSCT. The tumors exhibited various architectural patterns (diffuse, corded/trabecular, tubular, sertoliform, fascicular, whorled, nested, microfollicular, and pseudoglandular), often in combination. The immunohistochemical analysis confirmed the polyphenotypic immunoprofile, often with coexpression of sex cord–stromal, smooth muscle, and epithelial markers, as well as hormone receptors. Next-generation sequencing RNA analysis revealed recurrent NCOA1-3 gene fusions in 22/32 analyzed cases (69%), including ESR1::NCOA3 (11/22), GREB1::NCOA2 (7/22), ESR1::NCOA2 (3/22), and GREB1::NCOA1 (1/22). Tumor mutation burden was low in all cases. The fusion-positive cases exhibited statistically significant association with whorled architecture, conversely necrosis was associated with fusion-negative status. We did not find a significant relationship between any architectural pattern and GREB1 alterations, but the NCOA2-altered tumors were associated with pseudoglandular architecture. The GREB1-altered cases occurred in older patients and tended to be more often intramural masses compared with ESR1-altered cases. On the contrary, the ESR1-altered cases presented more often like submucosal or polypoid tumors. Two tumors exhibited aggressive behavior with recurrent disease. Both of these cases harbored a GREB1::NCOA2 fusion. Unsupervised hierarchical cluster analysis of our cohort revealed 2 main clusters. The tumors with GREB1 or NCOA2 fusion cluster together, suggesting that there are underlying molecular differences between these cases and cases with ESR1::NCOA3 fusion or without fusion. Our findings contribute to the growing knowledge about a rare neoplasm with currently uncertain biological behavior.
类似卵巢性索肿瘤的子宫肿瘤(UTROSCT)是一种血统不确定、恶性程度低的罕见肿瘤。大多数肿瘤表现为良性,但也有一部分 UTROSCT 表现出侵袭性的临床过程,会出现复发和转移。UTROSCT 中反复出现的分子改变大多是涉及 NCOA1-3 的基因融合。我们对 35 例 UTROSCT 进行了全面的临床病理学、形态学、免疫组化和分子分析。这些肿瘤表现出不同的结构模式(弥漫型、条索状/十八形、管状、绒毛状、束状、轮状、巢状、微叶状和假腺状),而且往往是混合型。免疫组化分析证实了多型性免疫特征,性索间质、平滑肌和上皮标记物以及激素受体往往同时表达。NGS RNA分析显示,在22/32个分析病例(69%)中存在复发性NCOA1-3基因融合,包括ESR1::NCOA3(11/22)、GREB1::NCOA2(7/22)、ESR1::NCOA2(3/22)和GREB1::NCOA1(1/22)。所有病例的肿瘤突变负荷都很低。融合阳性病例在统计学上与轮状结构有显著关联,相反,坏死则与融合阴性状态有关。我们没有发现任何结构模式与GREB1-改变之间有明显的关系,但NCOA2-改变的肿瘤与假腺结构有关。与 ESR1 基因改变的病例相比,GREB1 基因改变的病例多发生在年龄较大的患者中,而且往往是壁内肿块。相反,ESR1改变的病例更多表现为粘膜下或息肉状肿瘤。有两个肿瘤表现出侵袭性和复发性。这两个病例都存在GREB1::NCOA2融合。对我们的队列进行的无监督分层聚类分析发现了两个主要聚类。GREB1或NCOA2融合的肿瘤聚集在一起,表明这些病例与ESR1::NCOA3融合或无融合的病例之间存在潜在的分子差异。我们的研究结果有助于进一步了解这种目前生物学行为尚不确定的罕见肿瘤。
{"title":"Unraveling the Molecular Landscape of Uterine Tumor Resembling Ovarian Sex Cord Tumor: Insights From A Clinicopathological, Morphologic, Immunohistochemical, and Molecular Analysis of 35 Cases","authors":"Miroslava Flídrová ,&nbsp;Nikola Hájková ,&nbsp;Jan Hojný ,&nbsp;Jiří Dvořák ,&nbsp;Romana Michálková ,&nbsp;Eva Krkavcová ,&nbsp;Jan Laco ,&nbsp;W. Glenn McCluggage ,&nbsp;Giovanna Giordano ,&nbsp;Enrico Maria Silini ,&nbsp;Květoslava Michalová ,&nbsp;Magdalena Bizoń ,&nbsp;Kristýna Němejcová ,&nbsp;Pavel Dundr ,&nbsp;Michaela Kendall Bártů","doi":"10.1016/j.modpat.2024.100611","DOIUrl":"10.1016/j.modpat.2024.100611","url":null,"abstract":"<div><div>Uterine tumor resembling ovarian sex cord tumor (UTROSCT) is a rare tumor of uncertain lineage and low malignant potential. Most tumors behave in a benign manner, but a subset of UTROSCT exhibit an aggressive clinical course with recurrences and metastases. The recurrent molecular alterations in UTROSCT mostly represent gene fusions involving <em>NCOA1</em>-<em>3</em>. We performed a comprehensive clinicopathological, morphologic, immunohistochemical, and molecular analysis on a cohort of 35 UTROSCT. The tumors exhibited various architectural patterns (diffuse, corded/trabecular, tubular, sertoliform, fascicular, whorled, nested, microfollicular, and pseudoglandular), often in combination. The immunohistochemical analysis confirmed the polyphenotypic immunoprofile, often with coexpression of sex cord–stromal, smooth muscle, and epithelial markers, as well as hormone receptors. Next-generation sequencing RNA analysis revealed recurrent <em>NCOA1</em>-<em>3</em> gene fusions in 22/32 analyzed cases (69%), including <em>ESR1</em>::<em>NCOA3</em> (11/22), <em>GREB1</em>::<em>NCOA2</em> (7/22), <em>ESR1</em>::<em>NCOA2</em> (3/22), and <em>GREB1</em>::<em>NCOA1</em> (1/22). Tumor mutation burden was low in all cases. The fusion-positive cases exhibited statistically significant association with whorled architecture, conversely necrosis was associated with fusion-negative status. We did not find a significant relationship between any architectural pattern and <em>GREB1</em> alterations, but the <em>NCOA2</em>-altered tumors were associated with pseudoglandular architecture. The <em>GREB1</em>-altered cases occurred in older patients and tended to be more often intramural masses compared with <em>ESR1</em>-altered cases. On the contrary, the <em>ESR1</em>-altered cases presented more often like submucosal or polypoid tumors. Two tumors exhibited aggressive behavior with recurrent disease. Both of these cases harbored a <em>GREB1</em>::<em>NCOA2</em> fusion. Unsupervised hierarchical cluster analysis of our cohort revealed 2 main clusters. The tumors with <em>GREB1</em> or <em>NCOA2</em> fusion cluster together, suggesting that there are underlying molecular differences between these cases and cases with <em>ESR1</em>::<em>NCOA3</em> fusion or without fusion. Our findings contribute to the growing knowledge about a rare neoplasm with currently uncertain biological behavior.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"37 12","pages":"Article 100611"},"PeriodicalIF":7.1,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142291435","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
MYC Rearrangement Prediction From LYSA Whole Slide Images in Large B-Cell Lymphoma: A Multicentric Validation of Self-supervised Deep Learning Models 从 LYSA 全切片图像预测大 B 细胞淋巴瘤中的 MYC 重排:自我监督深度学习模型的多中心验证。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-09-10 DOI: 10.1016/j.modpat.2024.100610
Charlotte Syrykh , Valentina Di Proietto , Eliott Brion , Christiane Copie-Bergman , Fabrice Jardin , Peggy Dartigues , Philippe Gaulard , Thierry Jo Molina , Josette Briere , Lucie Oberic , Corine Haioun , Hervé Tilly , Charles Maussion , Mehdi Morel , Jean-Baptiste Schiratti , Camille Laurent
Large B-cell lymphoma (LBCL) is a heterogeneous lymphoid malignancy in which MYC gene rearrangement (MYC-R) is associated with a poor prognosis, prompting the recommendation for more intensive treatment. MYC-R detection relies on fluorescence in situ hybridization method which is time consuming, expensive, and not available in all laboratories. Automating MYC-R detection on hematoxylin-and-eosin–stained whole slide images of LBCL would decrease the need for costly molecular testing and improve pathologists’ productivity. We developed an interpretable deep learning algorithm to detect MYC-R considering recent advances in self-supervised learning and providing an extensive comparison of 7 feature extractors and 6 multiple instance learning models, themselves. Four different multicentric cohorts, including 1247 patients with LBCL, were used for training and validation. The best deep learning model reached an average area under the receiver operating characteristic curve score of 81.9% during crossvalidation on the largest LBCL cohort, and area under the receiver operating characteristic curve scores ranging from 62.2% to 74.5% when evaluated on other unseen cohorts. In addition, we demonstrated that using this model as a prescreening tool (with a false-negative rate of 0%), fluorescence in situ hybridization testing would be avoided in 35% of cases. This work demonstrates the feasibility of developing a medical device to efficiently detect MYC gene rearrangement on hematoxylin-and-eosin–stained whole slide images in daily practice.
大 B 细胞淋巴瘤(LBCL)是一种异质性淋巴恶性肿瘤,其中 MYC 基因重排(MYC-R)与预后不良有关,因此建议进行更深入的治疗。MYC-R 的检测依赖荧光原位杂交(FISH)方法,这种方法耗时长、成本高,而且并非所有实验室都能采用。在苏木精和伊红(HE)染色的LBCL全切片图像(WSI)上自动检测MYC-R将减少对昂贵的分子检测的需求,并提高病理学家的工作效率。考虑到自监督学习的最新进展,我们开发了一种可解释的深度学习(DL)算法来检测 MYC-R,并对七种特征提取器和六种多实例学习模型进行了广泛比较。四个不同的多中心队列(包括 1 247 名 LBCL 患者)被用于训练和验证。在对最大的 LBCL 队列进行交叉验证时,最佳 DL 模型的平均 ROC AUC 得分为 81.9%,在对其他未见队列进行评估时,ROC AUC 得分为 62.2% 到 74.5%。此外,我们还证明,使用该模型作为预筛工具(假阴性率为 0%),可避免 35% 的病例进行 FISH 检测。这项工作证明了在日常实践中开发一种医疗设备来有效检测 HE WSI 上 MYC 基因重排的可行性。
{"title":"MYC Rearrangement Prediction From LYSA Whole Slide Images in Large B-Cell Lymphoma: A Multicentric Validation of Self-supervised Deep Learning Models","authors":"Charlotte Syrykh ,&nbsp;Valentina Di Proietto ,&nbsp;Eliott Brion ,&nbsp;Christiane Copie-Bergman ,&nbsp;Fabrice Jardin ,&nbsp;Peggy Dartigues ,&nbsp;Philippe Gaulard ,&nbsp;Thierry Jo Molina ,&nbsp;Josette Briere ,&nbsp;Lucie Oberic ,&nbsp;Corine Haioun ,&nbsp;Hervé Tilly ,&nbsp;Charles Maussion ,&nbsp;Mehdi Morel ,&nbsp;Jean-Baptiste Schiratti ,&nbsp;Camille Laurent","doi":"10.1016/j.modpat.2024.100610","DOIUrl":"10.1016/j.modpat.2024.100610","url":null,"abstract":"<div><div>Large B-cell lymphoma (LBCL) is a heterogeneous lymphoid malignancy in which <em>MYC</em> gene rearrangement (<em>MYC</em>-R) is associated with a poor prognosis, prompting the recommendation for more intensive treatment. <em>MYC</em>-R detection relies on fluorescence in situ hybridization method which is time consuming, expensive, and not available in all laboratories. Automating <em>MYC</em>-R detection on hematoxylin-and-eosin–stained whole slide images of LBCL would decrease the need for costly molecular testing and improve pathologists’ productivity. We developed an interpretable deep learning algorithm to detect <em>MYC</em>-R considering recent advances in self-supervised learning and providing an extensive comparison of 7 feature extractors and 6 multiple instance learning models, themselves. Four different multicentric cohorts, including 1247 patients with LBCL, were used for training and validation. The best deep learning model reached an average area under the receiver operating characteristic curve score of 81.9% during crossvalidation on the largest LBCL cohort, and area under the receiver operating characteristic curve scores ranging from 62.2% to 74.5% when evaluated on other unseen cohorts. In addition, we demonstrated that using this model as a prescreening tool (with a false-negative rate of 0%), fluorescence in situ hybridization testing would be avoided in 35% of cases. This work demonstrates the feasibility of developing a medical device to efficiently detect <em>MYC</em> gene rearrangement on hematoxylin-and-eosin–stained whole slide images in daily practice.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"37 12","pages":"Article 100610"},"PeriodicalIF":7.1,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142291427","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Pathologic Features of Malignancies Presenting as Asymmetry on Mammography 在乳房 X 射线照相术中表现为不对称的恶性肿瘤的病理学特征。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-09-10 DOI: 10.1016/j.modpat.2024.100612
Mohamed M.H. Kahila , Allyson L. Chesebro , Catherine S. Giess , Esther Rhei , Xuefei Hong , Susan C. Lester
The majority of breast cancers have a solid tumor growth pattern and are seen on mammography as dense masses with defined borders. Cancers detected as asymmetry are rare, and little has been published about their pathologic features. These cancers do not form discrete masses, and a border is not evident. This retrospective case series was undertaken to identify malignancies presenting as asymmetry, to describe their histologic and biologic features and to correlate these features with the mammographic appearance. During the 7.5 years of the study, 18,419 coreneedle biopsies were performed and 42 cases of malignancy presenting as asymmetry were diagnosed (0.2%). The majority were invasive carcinomas (30% or 71%), followed by ductal carcinoma in situ (9% or 21%) and lymphoma (3% or 7%). The invasive carcinomas could be divided into 3 groups: very small unifocal (T1a) carcinomas, larger unifocal carcinomas, and cases with multiple foci of invasion. The latter group had a higher rate of lymph node metastases and more stage III cancers. The invasive carcinomas were predominantly of special histologic types and associated with a minimal stromal response. In contrast, the cases of ductal carcinoma in situ tended to be of higher grade and elicited periductal fibrosis, which likely contributed to the increased density seen on mammography. Although most of the invasive carcinomas were of favorable biologic type (97%) and were stage I (67%), triple-negative carcinomas and stage III carcinomas were also detected. When evaluating core needle biopsies performed for asymmetry, pathologists should be aware that these cancers can have a subtle infiltrative appearance with little or no desmoplastic response, mirroring their appearance by imaging.
大多数乳腺癌都是实性肿瘤,在乳房 X 线照相术中表现为边界清晰的致密肿块。以不对称形式发现的癌症很少见,有关其病理特征的文献也很少。这些癌症不会形成不连续的肿块,边界也不明显。这项回顾性病例系列研究旨在确定表现为不对称的恶性肿瘤,描述其组织学和生物学特征,并将这些特征与乳房X线摄影外观进行关联。在7.5年的研究期间,共进行了18,419例核心针活检(CNB),诊断出42例表现为不对称的恶性肿瘤(0.2%)。大部分是浸润性癌(30 例或 71%),其次是导管原位癌(9 例或 21%)和淋巴瘤(3 例或 7%)。浸润性癌可分为三组:非常小的单灶癌(T1a)、较大的单灶癌和有多个浸润灶的病例。后者有较高的淋巴结转移率和较多的 III 期癌症。浸润癌主要属于特殊组织学类型,对基质的反应很小。相比之下,DCIS病例往往级别较高,并引起导管周围纤维化,这可能是导致乳房X光片上密度增加的原因。虽然大多数浸润性癌属于良好的生物类型(97%),并且属于 I 期(67%),但也发现了三阴性癌和 III 期癌。病理学家在评估因不对称而进行的核心针活检时应注意,这些癌症可能会有微妙的浸润性外观,几乎没有或根本没有去瘤反应,这与影像学上的表现如出一辙。
{"title":"Pathologic Features of Malignancies Presenting as Asymmetry on Mammography","authors":"Mohamed M.H. Kahila ,&nbsp;Allyson L. Chesebro ,&nbsp;Catherine S. Giess ,&nbsp;Esther Rhei ,&nbsp;Xuefei Hong ,&nbsp;Susan C. Lester","doi":"10.1016/j.modpat.2024.100612","DOIUrl":"10.1016/j.modpat.2024.100612","url":null,"abstract":"<div><div>The majority of breast cancers have a solid tumor growth pattern and are seen on mammography as dense masses with defined borders. Cancers detected as asymmetry are rare, and little has been published about their pathologic features. These cancers do not form discrete masses, and a border is not evident. This retrospective case series was undertaken to identify malignancies presenting as asymmetry, to describe their histologic and biologic features and to correlate these features with the mammographic appearance. During the 7.5 years of the study, 18,419 coreneedle biopsies were performed and 42 cases of malignancy presenting as asymmetry were diagnosed (0.2%). The majority were invasive carcinomas (30% or 71%), followed by ductal carcinoma in situ (9% or 21%) and lymphoma (3% or 7%). The invasive carcinomas could be divided into 3 groups: very small unifocal (T1a) carcinomas, larger unifocal carcinomas, and cases with multiple foci of invasion. The latter group had a higher rate of lymph node metastases and more stage III cancers. The invasive carcinomas were predominantly of special histologic types and associated with a minimal stromal response. In contrast, the cases of ductal carcinoma in situ tended to be of higher grade and elicited periductal fibrosis, which likely contributed to the increased density seen on mammography. Although most of the invasive carcinomas were of favorable biologic type (97%) and were stage I (67%), triple-negative carcinomas and stage III carcinomas were also detected. When evaluating core needle biopsies performed for asymmetry, pathologists should be aware that these cancers can have a subtle infiltrative appearance with little or no desmoplastic response, mirroring their appearance by imaging.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"37 12","pages":"Article 100612"},"PeriodicalIF":7.1,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142291429","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Machine Learning Streamlines the Morphometric Characterization and Multiclass Segmentation of Nuclei in Different Follicular Thyroid Lesions: Everything in a NUTSHELL 机器学习简化了不同甲状腺滤泡病变中细胞核的形态特征描述和多类分割:一切尽在简述。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-09-05 DOI: 10.1016/j.modpat.2024.100608
Vincenzo L’Imperio , Vasco Coelho , Giorgio Cazzaniga , Daniele M. Papetti , Fabio Del Carro , Giulia Capitoli , Mario Marino , Joranda Ceku , Nicola Fusco , Mariia Ivanova , Andrea Gianatti , Marco S. Nobile , Stefania Galimberti , Daniela Besozzi , Fabio Pagni
The diagnostic assessment of thyroid nodules is hampered by the persistence of uncertainty in borderline cases and further complicated by the inclusion of noninvasive follicular tumor with papillary-like nuclear features (NIFTP) as a less aggressive alternative to papillary thyroid carcinoma (PTC). In this setting, computational methods might facilitate the diagnostic process by unmasking key nuclear characteristics of NIFTP. The main aims of this work were to (1) identify morphometric features of NIFTP and PTC that are interpretable for the human eye and (2) develop a deep learning model for multiclass segmentation as a support tool to reduce diagnostic variability. Our findings confirmed that nuclei in NIFTP and PTC share multiple characteristics, setting them apart from hyperplastic nodules (HP). The morphometric analysis identified 15 features that can be translated into nuclear alterations readily understandable by pathologists, such as a remarkable internuclear homogeneity for HP in contrast to a major complexity in the chromatin texture of NIFTP and to the peculiar pattern of nuclear texture variability of PTC. A few NIFTP cases with available next-generation sequencing data were also analyzed to initially explore the impact of RAS-related mutations on nuclear morphometry. Finally, a pixel-based deep learning model was trained and tested on whole-slide images of NIFTP, PTC, and HP cases. The model, named NUTSHELL (NUclei from Thyroid tumors Segmentation to Highlight Encapsulated Low-malignant Lesions), successfully detected and classified the majority of nuclei in all whole-slide image tiles, showing comparable results with already well-established pathology nuclear scores. NUTSHELL provides an immediate overview of NIFTP areas and can be used to detect microfoci of PTC within extensive glandular samples or identify lymph node metastases. NUTSHELL can be run inside WSInfer with an easy rendering in QuPath, thus facilitating the democratization of digital pathology.
对甲状腺结节的诊断评估因边界病例中持续存在的不确定性而受阻,并因具有乳头状核特征的非侵袭性滤泡性肿瘤(NIFTP)作为甲状腺乳头状癌(PTC)的一种侵袭性较低的替代物而进一步复杂化。在这种情况下,计算方法可以通过揭示 NIFTP 的关键核特征来促进诊断过程。这项工作的主要目的是:(1)识别人眼可解读的 NIFTP 和 PTC 形态特征;(2)开发一种用于多类分割的深度学习模型,作为减少诊断变异性的辅助工具。我们的研究结果证实,NIFTP 和 PTC 中的细胞核具有多种特征,使它们有别于增生性结节(HP)。形态计量分析确定了 15 个特征,这些特征可转化为病理学家易于理解的核改变,例如 HP 的核间同质性显著,而 NIFTP 的染色质纹理则非常复杂,PTC 的核纹理变异模式也很特别。此外,还分析了一些有 NGS 数据的 NIFTP 病例,以初步探索 RAS 相关突变对核形态学的影响。最后,在 NIFTP、PTC 和 HP 病例的整张切片图像(WSI)上训练和测试了基于像素的深度学习模型。该模型被命名为NUTSHELL(NUclei from Thyroid tumors Segmentation to Highlight Encapsulated Low-malignant Lesions),它成功地检测并分类了所有WSIs瓦片中的大多数细胞核,显示出与已经成熟的病理学核评分相当的结果。NUTSHELL 可提供 NIFTP 区域的即时概览,可用于检测大面积腺体样本中的 PTC 微小病灶或识别淋巴结转移。NUTSHELL可在WSInfer中运行,并可在QuPath中轻松渲染,从而促进数字病理学的民主化。
{"title":"Machine Learning Streamlines the Morphometric Characterization and Multiclass Segmentation of Nuclei in Different Follicular Thyroid Lesions: Everything in a NUTSHELL","authors":"Vincenzo L’Imperio ,&nbsp;Vasco Coelho ,&nbsp;Giorgio Cazzaniga ,&nbsp;Daniele M. Papetti ,&nbsp;Fabio Del Carro ,&nbsp;Giulia Capitoli ,&nbsp;Mario Marino ,&nbsp;Joranda Ceku ,&nbsp;Nicola Fusco ,&nbsp;Mariia Ivanova ,&nbsp;Andrea Gianatti ,&nbsp;Marco S. Nobile ,&nbsp;Stefania Galimberti ,&nbsp;Daniela Besozzi ,&nbsp;Fabio Pagni","doi":"10.1016/j.modpat.2024.100608","DOIUrl":"10.1016/j.modpat.2024.100608","url":null,"abstract":"<div><div>The diagnostic assessment of thyroid nodules is hampered by the persistence of uncertainty in borderline cases and further complicated by the inclusion of noninvasive follicular tumor with papillary-like nuclear features (NIFTP) as a less aggressive alternative to papillary thyroid carcinoma (PTC). In this setting, computational methods might facilitate the diagnostic process by unmasking key nuclear characteristics of NIFTP. The main aims of this work were to (1) identify morphometric features of NIFTP and PTC that are interpretable for the human eye and (2) develop a deep learning model for multiclass segmentation as a support tool to reduce diagnostic variability. Our findings confirmed that nuclei in NIFTP and PTC share multiple characteristics, setting them apart from hyperplastic nodules (HP). The morphometric analysis identified 15 features that can be translated into nuclear alterations readily understandable by pathologists, such as a remarkable internuclear homogeneity for HP in contrast to a major complexity in the chromatin texture of NIFTP and to the peculiar pattern of nuclear texture variability of PTC. A few NIFTP cases with available next-generation sequencing data were also analyzed to initially explore the impact of RAS-related mutations on nuclear morphometry. Finally, a pixel-based deep learning model was trained and tested on whole-slide images of NIFTP, PTC, and HP cases. The model, named NUTSHELL (NUclei from Thyroid tumors Segmentation to Highlight Encapsulated Low-malignant Lesions), successfully detected and classified the majority of nuclei in all whole-slide image tiles, showing comparable results with already well-established pathology nuclear scores. NUTSHELL provides an immediate overview of NIFTP areas and can be used to detect microfoci of PTC within extensive glandular samples or identify lymph node metastases. NUTSHELL can be run inside WSInfer with an easy rendering in QuPath, thus facilitating the democratization of digital pathology.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"37 12","pages":"Article 100608"},"PeriodicalIF":7.1,"publicationDate":"2024-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142145971","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Conflicting Prognostic Role of the Stroma–Tumor Ratio in Breast Cancer Molecular Subtypes 乳腺癌分子亚型中基质比率的预后作用相互矛盾。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-08-30 DOI: 10.1016/j.modpat.2024.100607
Suzan F. Ghannam , Shorouk Makhlouf , Mansour Alsaleem , Catrin Sian Rutland , Cinzia Allegrucci , Nigel P. Mongan , Emad A. Rakha
The tumor microenvironment plays a key role in tumor progression. The proportion of the stroma-to-tumor cells (stroma-tumor ratio [STR]) has a variable prognostic significance in breast cancer (BC) molecular classes. In this study, we evaluated the mechanisms of stroma formation and composition in different molecular subtypes, which could explain the different prognostic values. This study interrogated 2 large well-characterized BC cohorts. Firstly, an in-house BC cohort (n = 822) encompassing all BC molecular subtypes from the Nottingham series was used. In each subtype, stromal assessment was carried out, and tumors were assigned to 2 groups: high and low STR, and further correlation with tumor characteristics and patient outcomes was investigated. The contribution of tumor-infiltrating lymphocytes (TILs) to the stroma has also been studied. Secondly, the public domain data set (The Cancer Genome Atlas data [TCGA], n = 978) was used as a validation cohort and for differential gene expression (DGE) analysis. DGE was performed to identify a set of genes associated with high STR in the 3 main molecular subtypes. High STR was associated with favorable patient outcomes in the whole cohort and in the luminal subtype, whereas high STR showed an association with poor outcomes in triple-negative BC (TNBC). No association with outcome was found in the HER2 enriched BC. DGE analysis identified various pathways in luminal and TNBC subtypes, with immune upregulation and hypoxia pathways enriched in TNBC, and pathways related to fibrosis and stromal remodeling enriched in the luminal group instead. Low STR accompanied by high TILs was shown to carry the most favorable prognosis in TNBC. In line with the DGE results, TILs played a major prognostic role in the stroma of TNBC but not in the luminal or HER2-enriched subtypes. The underlying molecular mechanisms and composition of the stroma in BC are variable in the molecular subtypes and explain the difference in its prognostic significance.
肿瘤微环境在肿瘤进展中起着关键作用。基质与肿瘤细胞的比例(基质-肿瘤比值(STR))在乳腺癌(BC)分子分型中具有不同的预后意义。在本研究中,我们评估了不同分子亚型的基质形成和组成机制,这可以解释不同的预后价值。本研究调查了两个大型的特征明确的BC队列。首先,研究人员使用了诺丁汉大学的内部 BC 队列(n=822),其中包括所有 BC 分子亚型。在每个亚型中,都进行了基质评估,并将肿瘤分为两组:高STR组和低STR组,进一步研究了肿瘤特征和患者预后的相关性。此外,还研究了肿瘤浸润淋巴细胞(TILs)对基质的贡献。其次,将公共数据集(癌症基因组图谱数据(TCGA),n=978)用作验证队列和差异基因表达(DGE)分析。通过 DGE 分析,确定了三个主要分子亚型中与高 STR 相关的一组基因。在整个队列和管腔亚型中,高STR与患者的良好预后相关,而在TNBC中,高STR与不良预后相关。在HER2富集的BC中没有发现与预后相关的因素。DGE分析确定了管腔亚型和TNBC亚型中的各种通路,TNBC中富含免疫上调和缺氧通路,而管腔组则富含与纤维化和基质重塑相关的通路。在 TNBC 中,低 STR 伴有高 TILs 的预后最为有利。与DGE结果一致,TILs在TNBC的基质中起着重要的预后作用,但在管腔型或HER2富集亚型中则不起作用。在不同的分子亚型中,BC基质的潜在分子机制和组成各不相同,这也是其预后意义不同的原因。
{"title":"The Conflicting Prognostic Role of the Stroma–Tumor Ratio in Breast Cancer Molecular Subtypes","authors":"Suzan F. Ghannam ,&nbsp;Shorouk Makhlouf ,&nbsp;Mansour Alsaleem ,&nbsp;Catrin Sian Rutland ,&nbsp;Cinzia Allegrucci ,&nbsp;Nigel P. Mongan ,&nbsp;Emad A. Rakha","doi":"10.1016/j.modpat.2024.100607","DOIUrl":"10.1016/j.modpat.2024.100607","url":null,"abstract":"<div><div>The tumor microenvironment plays a key role in tumor progression. The proportion of the stroma-to-tumor cells (stroma-tumor ratio [STR]) has a variable prognostic significance in breast cancer (BC) molecular classes. In this study, we evaluated the mechanisms of stroma formation and composition in different molecular subtypes, which could explain the different prognostic values. This study interrogated 2 large well-characterized BC cohorts. Firstly, an in-house BC cohort (n = 822) encompassing all BC molecular subtypes from the Nottingham series was used. In each subtype, stromal assessment was carried out, and tumors were assigned to 2 groups: high and low STR, and further correlation with tumor characteristics and patient outcomes was investigated. The contribution of tumor-infiltrating lymphocytes (TILs) to the stroma has also been studied. Secondly, the public domain data set (The Cancer Genome Atlas data [TCGA], n = 978) was used as a validation cohort and for differential gene expression (DGE) analysis. DGE was performed to identify a set of genes associated with high STR in the 3 main molecular subtypes. High STR was associated with favorable patient outcomes in the whole cohort and in the luminal subtype, whereas high STR showed an association with poor outcomes in triple-negative BC (TNBC). No association with outcome was found in the HER2 enriched BC. DGE analysis identified various pathways in luminal and TNBC subtypes, with immune upregulation and hypoxia pathways enriched in TNBC, and pathways related to fibrosis and stromal remodeling enriched in the luminal group instead. Low STR accompanied by high TILs was shown to carry the most favorable prognosis in TNBC. In line with the DGE results, TILs played a major prognostic role in the stroma of TNBC but not in the luminal or HER2-enriched subtypes. The underlying molecular mechanisms and composition of the stroma in BC are variable in the molecular subtypes and explain the difference in its prognostic significance.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"37 12","pages":"Article 100607"},"PeriodicalIF":7.1,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142109569","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Chondroid Synoviocytic Neoplasm: A Clinicopathologic, Immunohistochemical, and Molecular Genetic Study of a Distinctive Tumor of Synoviocytes 软骨滑膜细胞肿瘤:滑膜细胞独特肿瘤的临床病理学、免疫组织化学和分子遗传学研究。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-08-23 DOI: 10.1016/j.modpat.2024.100598
Erica Y. Kao , Fisun Ardic , Numrah Fadra , Jessica D. Hohenstein , Rohini Mopuri , Doris E. Wenger , Lukas Streich , Lisa M. Hines , Andrew L. Folpe

Tumors resembling tenosynovial giant cell tumor (TGCT) but additionally forming chondroid matrix are rare and most often involve the temporomandibular joint (TMJ). We studied 21 tumors consisting of synoviocytes (large, eosinophilic mononuclear cells containing hemosiderin) and chondroid matrix to better understand these unusual neoplasms. The tumors occurred in 10 males and 11 females, in the age group of 31 to 80 years (median, 50 years) and involved the TMJ region (16), extremities (4), and spine (1). As in conventional TGCT, all were composed of synoviocytes, small histiocytes, foamy macrophages, siderophages, and osteoclast-like giant cells in variably hyalinized background. Expansile nodules of large, moderately atypical synoviocytes were present, in addition to “chondroblastoma-like,” “chondroma-like,” or “phosphaturic mesenchymal tumor-like” calcified matrix. The synoviocytes expressed clusterin (17/19) and less often desmin (3/15). The tumors were frequently CSF1 positive by chromogenic in situ hybridization (8/13) but at best weakly positive for CSF1 by immunohistochemistry (0/3). Background small histiocytes were CD163 positive (12/12). All were FGF23 negative (0/10). Cells within lacunae showed a synoviocytic phenotype (clusterin positive; S100 protein and ERG negative). RNA-Seq was successful in 13 cases; fusions were present in 7 tumors, including FN1::TEK (5 cases); FN1::PRG4 (2 cases); and MALAT1::FN1, PDGFRA::USP35, and TIMP3::ZCCHC7 (1 case each). Three tumors contained more than 1 fusion (FN1::PRG4 with TIMP3::ZCCHC7, FN1::TEK with FN1::PRG4, and FN1::TEK with MALAT1::FN1). Clinical follow-up (17 patients; median follow-up duration 38 months; range 4-173 months) showed 13 (76%) to be alive without evidence of disease and 4 (24%) to be alive with persistent/recurrent local disease. No metastases or deaths from disease were observed. We conclude that these unusual tumors represent a distinct category of synoviocytic neoplasia, which we term “chondroid synoviocytic neoplasm,” rather than simply ordinary TGCT with cartilage. Despite potentially worrisome morphologic features, they appear to behave in at most a locally aggressive fashion.

与腱鞘巨细胞瘤(TGCT)相似但同时形成软骨基质的肿瘤(C-TGCT)非常罕见,且最常累及颞下颌关节(TMJ)。我们研究了 21 例由滑膜细胞(含有血色素的大型嗜酸性单核细胞)和软骨基质组成的肿瘤,以更好地了解这些不常见的肿瘤。这些肿瘤发生在 10 名男性和 11 名女性身上,年龄在 31-80 岁之间(中位数为 50 岁),涉及颞下颌关节区域(16 例)、四肢(4 例)和脊柱(1 例)。与传统的 TGCT 一样,所有病例均由滑膜细胞、小组织细胞、泡沫巨噬细胞、嗜酸粒细胞和破骨细胞样巨细胞组成,背景呈不同程度的透明化。除了 "软骨母细胞瘤样"、"软骨瘤样 "或 "磷脂间质瘤样 "钙化基质外,还存在大的、中度不典型滑膜细胞的扩张性结节。滑膜细胞表达群集素(17/19),较少表达 desmin(3/15)。通过 CISH 检测,肿瘤经常呈 CSF1 阳性(8/13),但通过 IHC 检测,CSF1 最多呈弱阳性(0/3)。背景小组织细胞 CD163 阳性(12/12)。FGF23全部阴性(0/10)。裂隙内的细胞表现为滑膜细胞表型(集束素阳性;S100 蛋白和 ERG 阴性)。13例肿瘤成功进行了RNA-seq分析;7例肿瘤存在融合,包括FN1::TEK(5例)、FN1::PRG4(2例)、MALAT1::FN1、PDGFRA::USP35和TIMP3::ZCCHC7(各1例)。三个肿瘤包含一个以上的融合(FN1::PRG4 与 TIMP3::ZCCHC7、FN1::TEK 与 FN1::PRG4、FN1::TEK 与 MALAT1::FN1)。临床随访(17 名患者;中位随访时间为 38 个月;范围为 4-173 个月)显示,13 名患者(76%)存活且无疾病迹象,4 名患者(24%)存活且局部疾病持续/复发。没有发现转移或死亡病例。我们的结论是,这些不寻常的肿瘤代表了一种独特的滑膜细胞肿瘤,我们称之为 "软骨滑膜细胞肿瘤",而不仅仅是普通的软骨TGCT。尽管这些肿瘤具有潜在的令人担忧的形态特征,但它们的表现似乎最多只是局部侵袭性的。
{"title":"Chondroid Synoviocytic Neoplasm: A Clinicopathologic, Immunohistochemical, and Molecular Genetic Study of a Distinctive Tumor of Synoviocytes","authors":"Erica Y. Kao ,&nbsp;Fisun Ardic ,&nbsp;Numrah Fadra ,&nbsp;Jessica D. Hohenstein ,&nbsp;Rohini Mopuri ,&nbsp;Doris E. Wenger ,&nbsp;Lukas Streich ,&nbsp;Lisa M. Hines ,&nbsp;Andrew L. Folpe","doi":"10.1016/j.modpat.2024.100598","DOIUrl":"10.1016/j.modpat.2024.100598","url":null,"abstract":"<div><p>Tumors resembling tenosynovial giant cell tumor (TGCT) but additionally forming chondroid matrix are rare and most often involve the temporomandibular joint (TMJ). We studied 21 tumors consisting of synoviocytes (large, eosinophilic mononuclear cells containing hemosiderin) and chondroid matrix to better understand these unusual neoplasms. The tumors occurred in 10 males and 11 females, in the age group of 31 to 80 years (median, 50 years) and involved the TMJ region (16), extremities (4), and spine (1). As in conventional TGCT, all were composed of synoviocytes, small histiocytes, foamy macrophages, siderophages, and osteoclast-like giant cells in variably hyalinized background. Expansile nodules of large, moderately atypical synoviocytes were present, in addition to “chondroblastoma-like,” “chondroma-like,” or “phosphaturic mesenchymal tumor-like” calcified matrix. The synoviocytes expressed clusterin (17/19) and less often desmin (3/15). The tumors were frequently CSF1 positive by chromogenic in situ hybridization (8/13) but at best weakly positive for CSF1 by immunohistochemistry (0/3). Background small histiocytes were CD163 positive (12/12). All were FGF23 negative (0/10). Cells within lacunae showed a synoviocytic phenotype (clusterin positive; S100 protein and ERG negative). RNA-Seq was successful in 13 cases; fusions were present in 7 tumors, including <em>FN1::TEK</em> (5 cases); <em>FN1::PRG4</em> (2 cases); and <em>MALAT1::FN1</em>, <em>PDGFRA::USP35</em>, and <em>TIMP3::ZCCHC7</em> (1 case each). Three tumors contained more than 1 fusion (<em>FN1::PRG4</em> with <em>TIMP3::ZCCHC7</em>, <em>FN1::TEK</em> with <em>FN1::PRG4</em>, and <em>FN1::TEK</em> with <em>MALAT1::FN1</em>). Clinical follow-up (17 patients; median follow-up duration 38 months; range 4-173 months) showed 13 (76%) to be alive without evidence of disease and 4 (24%) to be alive with persistent/recurrent local disease. No metastases or deaths from disease were observed. We conclude that these unusual tumors represent a distinct category of synoviocytic neoplasia, which we term “chondroid synoviocytic neoplasm,” rather than simply ordinary TGCT with cartilage. Despite potentially worrisome morphologic features, they appear to behave in at most a locally aggressive fashion.</p></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"37 11","pages":"Article 100598"},"PeriodicalIF":7.1,"publicationDate":"2024-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142056042","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Acral Fibrochondromyxoid Tumor: A Clinicopathologic and Molecular Genetic Study of 37 Cases 喙纤维软骨瘤:37 例临床病理学和分子遗传学研究。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-08-23 DOI: 10.1016/j.modpat.2024.100599
Carina A. Dehner , Hadley Pearson , Shahd S. Almohsen , Ying-Chun Lo , Judith Jebastin Thangaiah , Jorge Torres-Mora , Ruifeng (Ray) Guo , Jonathan C. Baker , Andrew L. Folpe , Ahmed K. Alomari , Brendan C. Dickson , Steven D. Billings , Michael Michal , Elizabeth G. Demicco , Karen J. Fritchie , John S.A. Chrisinger

Acral fibrochondromyxoid tumor (AFCMT) is a recently described likely benign mesenchymal neoplasm arising in the distal extremities with distinctive histologic features and a recurrent THBS1::ADGRF5 fusion. We studied an additional 37 cases of AFCMT and expanded on the so-far reported clinicopathologic and molecular findings. Tumors occurred in 21 females and 16 males, ranging in age from 17 to 78 years (median age: 47), and solely involved the hands (24/37, 65%) or feet (13/37, 35%). Histologic examination revealed well-delineated uni- or multinodular tumors with prominent vasculature-rich septa and bland, chondrocyte-like tumor cells set within abundant chondromyxoid stroma. Immunohistochemical studies showed that tumor cells were positive for CD34 (25/27; 93%) and ERG (27/27; 100%), whereas negative for S100 protein (0/31). Molecular analysis revealed evidence of a THBS1::ADGRF5 fusion in 17 of 19 (89%) successfully tested tumors. Clinical follow-up was available in 8 cases (median: 97 months), with multiple local recurrences in 1 case at 276, 312, and 360 months. We conclude that AFCMT is a distinct entity with reproducible morphologic, immunohistochemical, and molecular genetic features that should be differentiated from other similar appearing acral mesenchymal neoplasms.

喙纤维软骨瘤(AFCMT)是最近描述的一种可能发生于四肢远端的良性间叶肿瘤,具有独特的组织学特征和复发性 THBS1::ADGRF5 融合。我们对另外 37 例 AFCMT 进行了研究,并对迄今为止报道的临床病理和分子研究结果进行了扩展。肿瘤发生于 21 名女性和 16 名男性,年龄在 17-78 岁之间(中位年龄:47 岁),仅累及手部(24/37,65%)或足部(13/37,35%)。组织学检查显示,单结节或多结节肿瘤界限清晰,有突出的富含血管的隔膜,平滑的软骨细胞样肿瘤细胞位于丰富的软骨基质中。免疫组化研究显示,肿瘤细胞的CD34(25/27;93%)和ERG(27/27;100%)阳性,而S100蛋白(0/31)阴性。分子分析显示,19 例成功检测的肿瘤中有 17 例(89%)存在 THBS1::ADGRF5 融合。对 8 例患者进行了临床随访(中位数:97 个月),其中 1 例患者在 276、312 和 360 个月时多次局部复发。我们的结论是,AFCMT 是一个独特的实体,具有可重现的形态学、免疫组化和分子遗传学特征,应与其他表现相似的尖锐湿疣间质瘤区分开来。
{"title":"Acral Fibrochondromyxoid Tumor: A Clinicopathologic and Molecular Genetic Study of 37 Cases","authors":"Carina A. Dehner ,&nbsp;Hadley Pearson ,&nbsp;Shahd S. Almohsen ,&nbsp;Ying-Chun Lo ,&nbsp;Judith Jebastin Thangaiah ,&nbsp;Jorge Torres-Mora ,&nbsp;Ruifeng (Ray) Guo ,&nbsp;Jonathan C. Baker ,&nbsp;Andrew L. Folpe ,&nbsp;Ahmed K. Alomari ,&nbsp;Brendan C. Dickson ,&nbsp;Steven D. Billings ,&nbsp;Michael Michal ,&nbsp;Elizabeth G. Demicco ,&nbsp;Karen J. Fritchie ,&nbsp;John S.A. Chrisinger","doi":"10.1016/j.modpat.2024.100599","DOIUrl":"10.1016/j.modpat.2024.100599","url":null,"abstract":"<div><p>Acral fibrochondromyxoid tumor (AFCMT) is a recently described likely benign mesenchymal neoplasm arising in the distal extremities with distinctive histologic features and a recurrent <em>THBS1::ADGRF5</em> fusion. We studied an additional 37 cases of AFCMT and expanded on the so-far reported clinicopathologic and molecular findings. Tumors occurred in 21 females and 16 males, ranging in age from 17 to 78 years (median age: 47), and solely involved the hands (24/37, 65%) or feet (13/37, 35%). Histologic examination revealed well-delineated uni- or multinodular tumors with prominent vasculature-rich septa and bland, chondrocyte-like tumor cells set within abundant chondromyxoid stroma. Immunohistochemical studies showed that tumor cells were positive for CD34 (25/27; 93%) and ERG (27/27; 100%), whereas negative for S100 protein (0/31). Molecular analysis revealed evidence of a <em>THBS1::ADGRF5</em> fusion in 17 of 19 (89%) successfully tested tumors. Clinical follow-up was available in 8 cases (median: 97 months), with multiple local recurrences in 1 case at 276, 312, and 360 months. We conclude that AFCMT is a distinct entity with reproducible morphologic, immunohistochemical, and molecular genetic features that should be differentiated from other similar appearing acral mesenchymal neoplasms.</p></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"37 12","pages":"Article 100599"},"PeriodicalIF":7.1,"publicationDate":"2024-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0893395224001790/pdfft?md5=ae76ad642139c78c0c55b0c2764e6472&pid=1-s2.0-S0893395224001790-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142056041","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Modern Pathology
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1