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Rapid On-Site Histology of Lung and Pleural Biopsies Using Higher Harmonic Generation Microscopy and Artificial Intelligence Analysis 利用高次谐波显微镜和人工智能分析对肺和胸膜活检组织进行快速现场组织学分析。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-10-16 DOI: 10.1016/j.modpat.2024.100633
Laura M.G. van Huizen , Max Blokker , Johannes M.A. Daniels , Teodora Radonic , Jan H. von der Thüsen , Mitko Veta , Jouke T. Annema , Marie Louise Groot
Lung cancer is one of the most prevalent and lethal cancers. To improve health outcomes while reducing health care burden, it becomes crucial to move toward early detection and cost-effective workflows. Currently, there is no method for the on-site rapid histologic feedback on biopsies taken in diagnostic, endoscopic, or surgical procedures. Higher harmonic generation (HHG) microscopy is a laser-based technique that provides images of unprocessed tissue. In this study, we report the feasibility of an HHG portable microscope in the clinical workflow in terms of acquisition time, image quality, and diagnostic accuracy in suspected pulmonary and pleural malignancy. One hundred nine biopsies of 47 patients were imaged and a biopsy overview image was provided within a median acquisition time of 6 minutes after excision. The assessment by pathologists and an artificial intelligence algorithm showed that image quality was sufficient for a malignancy or nonmalignancy diagnosis in 97% of the biopsies, and 87% of the HHG images were correctly scored by the pathologists. HHG is therefore an excellent candidate to provide a rapid pathology outcome on biopsy samples, enabling immediate diagnosis and (local) treatment.
肺癌是发病率和致死率最高的癌症之一。为了改善健康状况,同时减轻医疗负担,实现早期检测和具有成本效益的工作流程至关重要。目前,还没有一种方法能对内窥镜诊断或外科手术中的活组织切片进行现场快速组织学反馈。高次谐波发生(HHG)显微镜是一种基于激光的技术,可提供未经处理的组织图像。在此,我们报告了便携式高次谐波显微镜在临床工作流程中的可行性,包括采集时间、图像质量以及对疑似肺部和胸膜恶性肿瘤的诊断准确性。我们对 47 名患者的 109 例活检组织进行了成像,并在切除后 6 分钟内提供了活检组织概览图像。病理学家和人工智能(AI)算法的评估结果显示,97%的活检图像质量足以做出恶性或非恶性诊断,87%的 HHG 图像得到了病理学家的正确评分。因此,HHG 是为活检样本提供快速病理结果的绝佳候选方案,可实现即时诊断和(局部)治疗。
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引用次数: 0
Digital and Computational Pathology Applications in Bladder Cancer: Novel Tools Addressing Clinically Pressing Needs 数字和计算病理学在膀胱癌中的应用:解决临床迫切需求的新工具。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-10-12 DOI: 10.1016/j.modpat.2024.100631
João Lobo , Bassel Zein-Sabatto , Priti Lal , George J. Netto
Bladder cancer (BC) remains a major disease burden in terms of incidence, morbidity, mortality, and economic cost. Deciphering the intrinsic molecular subtypes and identification of key drivers of BC has yielded successful novel therapeutic strategies. Advances in computational and digital pathology are reshaping the field of anatomical pathology. This review offers an update on the most relevant computational algorithms in digital pathology that have been proposed to enhance BC management. These tools promise to enhance diagnostics, staging, and grading accuracy and streamline efficiency while advancing practice consistency. Computational applications that enable intrinsic molecular classification, predict response to neoadjuvant therapy, and identify targets of therapy are also reviewed.
就发病率、发病率、死亡率和经济成本而言,膀胱癌(BC)仍然是一种主要的疾病负担。破译膀胱癌的内在分子亚型和识别膀胱癌的关键驱动因素已成功地产生了新的治疗策略。计算和数字病理学的进步正在重塑解剖病理学领域。本综述介绍了数字病理学中最相关的计算算法的最新进展,这些算法已被提出用于加强膀胱癌的管理。这些工具有望提高诊断、分期和分级的准确性,并在提高实践一致性的同时简化效率。此外,还对能够进行内在分子分类、预测对新辅助治疗的反应以及确定治疗靶点的计算应用进行了综述。
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引用次数: 0
Spatial Profiling of Ovarian Clear Cell Carcinoma Reveals Immune-Hot Features 卵巢透明细胞癌的空间谱分析揭示了免疫热点特征。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-10-10 DOI: 10.1016/j.modpat.2024.100630
Ya-Ting Tai , Wei-Chou Lin , Jieru Ye , Denis T.-H. Chen , Ko-Chen Chen , Duncan Y.-T. Wang , Tuan Z. Tan , Lin-Hung Wei , Ruby Y.-J. Huang
Ovarian clear cell carcinoma (OCCC) has a high incidence in Asia, with a frequent occurrence at an early stage, but without sufficient data on molecular stratification for high-risk patients. Recently, immune-hot features have been proposed as indicators of poor prognosis in early stage OCCC. Specific patterns of intratumoral heterogeneity associated with immune-hot features must be defined. NanoString Digital Spatial Profiling technology (Cold spring biotech corp.) was used to decipher the spatial distribution of the 18-plex protein panel. Regions of interest (ROIs) were collected based on the reference hematoxylin and eosin–stained morphology. Areas of illumination (AOIs) were defined according to the ROI segmentation using the fluorescence signals of the visualization markers pan-cytokeratin (PanCK), CD45, or DNA. Unsupervised hierarchical clustering of 595 AOIs from 407 ROIs showed that the PanCK segments expressed different combinations of immune markers, suggestive of immune mimicry. The following 3 immune-hot clusters were identified: granzyme B–high, immune signal-high , and immune-like cells; the following 2 immune-cold clusters were identified: fibronectin-high and immune checkpoint–high cells. In tumor samples at the International Federation of Gynecology and Obstetrics stage IC1/2 experiencing recurrence, there was an increased occurrence of PanCK+ AOIs with immune signal-high and immune-like cell groups in the papillary morphology surrounded by macrophage lineage tumor-infiltrating immune cells (TIIs). In contrast, for tumor samples at the International Federation of Gynecology and Obstetrics stage IC3/II with recurrence, PanCK+ AOIs were prevalent in the fibronectin-high group, particularly in those with a tubulocystic morphology surrounded by lymphoid lineage non-TIIs. Our study on the spatial profiling of early stage OCCC tumors revealed that the immune mimicry of tumor cells, presence of TIIs, and morphologic patterns were associated with recurrence, which switched during tumor progression.
卵巢透明细胞癌(OCCC)在亚洲的发病率很高,常发生在早期阶段,但没有足够的数据对高危患者进行分子分层。最近,免疫热特征被认为是早期卵巢透明细胞癌预后不良的指标。必须明确与免疫热特征相关的瘤内异质性的具体模式。NanoString Digital Spatial Profiling技术用于解读18复合物蛋白质面板的空间分布。根据参考苏木精和伊红(H&E)染色形态收集 ROI。利用可视化标记泛角蛋白(PanCK)、CD45或DNA的荧光信号,根据ROI分割定义照明区域(AOI)。对来自 407 个 ROI 的 595 个 AOI 进行无监督分层聚类显示,PanCK 区段表达了不同的免疫标记物组合,表明存在免疫拟态。确定了三个免疫热簇:颗粒酶 B 高(GZMB)、免疫信号高(IH)和免疫样细胞(IL);确定了两个免疫冷簇:纤连蛋白高(FN)和免疫检查点高细胞(IC)。在复发的 FIGO IC1/2 期肿瘤样本中,PanCK+ AOIs 的发生率增加,IH 和 IL 组呈乳头状形态,周围有巨噬细胞系肿瘤浸润免疫细胞(TIIs)。相反,对于 FIGO IC3/II 期复发的肿瘤样本,PanCK + AOIs 在 FN 组中很普遍,尤其是那些形态为管状囊肿、周围有淋巴系非 TIIs 的样本。我们对早期 OCCC 肿瘤进行的空间图谱分析表明,肿瘤细胞的免疫拟态、TIIs 的存在和形态模式与复发有关,这些因素在肿瘤进展过程中会发生转换。
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引用次数: 0
Validation of Metallothionein Immunohistochemistry as a Highly Sensitive Screening Test for Wilson Disease 验证金属硫蛋白免疫组织化学作为威尔逊氏病高灵敏度筛查试验的效果
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-10-09 DOI: 10.1016/j.modpat.2024.100628
Nadarra L. Stokes , Ameya Patil , Oyedele Adeyi , Amarpreet Bhalla , Ian Brown , Kathleen Byrnes , Julien Calderaro , Diane Chen , Wei Chen , Caroline Cooper , Deepti Dhall , Wendy Frankel , Gretchen Galliano Gooch , Raul S. Gonzalez , Suntrea Hammer , Gillian Hale , Stephen Lagana , Catriona McKenzie , Daniela S. Allende , Roger K. Moreira , Rondell P. Graham
Wilson disease (WD) is a rare autosomal recessive condition with protean clinical manifestations that result from biallelic ATP7B mutations. However, nondestructive tissue tests to be applied clinically to tissue specimens are not widely available to effectively assess patients for possible WD. Previously, we showed that metallothionein (MTH) immunohistochemistry (IHC) has a high sensitivity and specificity for WD diagnosis and, thus, represents a potentially powerful diagnostic tool that can be used in routine histologic sections. This study aimed to validate this finding in a large cohort of bona fide patients with WD and to correlate metallothionein expression with other histologic features. We identified 91 cases of WD, which included 28 needle biopsies and 64 explants from 14 centers worldwide. Histologic features were evaluated, and a histopathological pattern was assigned to each case. All cases were evaluated with Masson trichrome and MTH IHC (clone UC1MT, Abcam) using a previously published technique. Liver tissues from chronic cholestatic diseases (n = 42) were used as controls. The median age of the cohort was 28.5 years. Of the 91 total cases, 83 were positive for MTH immunostain. In the controls, all 42 cases were negative for MTH immunostain. The sensitivity and specificity of MTH immunostain for WD were 91.20% and 100%, respectively. MTH IHC is a highly sensitive and specific cost-effective screening tool for WD. It can be used for patients across age groups, varied histologic patterns, and fibrosis stages. This marker could prove to be a valuable tool in the evaluation of patients with possible WD.
威尔逊氏病(WD)是一种罕见的常染色体隐性遗传病,其临床表现多变,是由双侧ATP7B突变引起的。然而,临床上应用于组织标本的非破坏性组织检验并不广泛,无法有效评估患者是否可能患有威尔森氏病。此前,我们发现金属硫蛋白(MTH)免疫组化对 WD 诊断具有很高的灵敏度和特异性,因此是一种可用于常规组织切片的潜在强大诊断工具。我们试图在一大批真正的 WD 患者中验证这一发现,并将金属硫蛋白的表达与其他组织学特征相关联。我们确定了 91 例 WD 病例,其中包括来自全球 14 个中心的 28 例针活检和 64 例组织切片。我们对组织学特征进行了评估,并为每个病例指定了一种组织病理学模式。所有病例均采用马森三色染色法和 MTH 免疫组织化学法(克隆 UC1MT,Abcam 公司)进行评估,采用的是之前已发表的技术。慢性胆汁淤积性疾病的肝组织(42 例)作为对照。组群的中位年龄为 28.5 岁。在 91 个病例中,83 个病例的 MTH 免疫印迹呈阳性。在对照组中,42 个病例的 MTH 免疫印迹均为阴性。MTH免疫印迹对WD的敏感性和特异性分别为91.20%和100%。MTH免疫组化是一种高度灵敏、特异且经济有效的WD筛查工具。它可用于不同年龄组、不同组织学形态和不同纤维化阶段的患者。在评估可能患有 WD 的患者时,该标记物可能被证明是一种有价值的工具。
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引用次数: 0
Early Genetic Divergence of High-Grade Carcinomas Originating from Low-Grade Serous Ovarian Neoplasms 源自低级别卵巢浆液性肿瘤的高级别癌的早期基因分化。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-10-09 DOI: 10.1016/j.modpat.2024.100629
M. Herman Chui , Qianqian Song , Jiarun Zhu , Yuchen Jiao , Brant Wang , Yeh Wang , Tian-Li Wang , Russell Vang , Ie-Ming Shih
The current paradigm implicates a fallopian tube precursor as the origin of most ovarian high-grade serous carcinomas (HGSCs). However, a rare subset of HGSCs develop via a distinct pathway from low-grade serous ovarian neoplasms (namely, serous borderline tumors and low-grade serous carcinoma). This alternate pathway for the development of HGSC and other poorly differentiated carcinomas of the ovary is not well understood. To elucidate the molecular pathogenesis and evolutionary trajectory of histologic transformation of low-grade serous neoplasms, we performed whole exome sequencing on microdissected low-grade and higher-grade components from 7 cases of serous borderline tumor or low-grade serous carcinoma associated with a synchronous or metachronous indeterminate/high-grade carcinoma. In most cases, there were relatively few somatic mutations shared between matched low-grade and higher-grade tumors compared with private mutations specific to each component (ie, phylogenetic trees with short trunks and long branches). Truncal mutations, present across all tumor samples from a given patient, included known drivers of low-grade serous neoplasms: KRAS (G12D, n = 4), BRAF (G469A, n = 1), NF2 (n = 1), and USP9X (n = 1). Transformation to HGSC was associated with a TP53 mutation with bi-allelic inactivation in 3 cases, all with severe nuclear atypia, and associated with genome-wide copy number alterations and allelic imbalances. TP53-wildtype tumors comprised a morphologic spectrum, which included indeterminate-grade serous carcinomas with moderate nuclear atypia and high mitotic activity, although lacking extensive chromosomal instability (n = 2) and poorly differentiated carcinomas (n = 2, including a high-grade Mullerian carcinoma and an undifferentiated carcinoma with sarcomatoid features). In summary, synchronous and metachronous low-grade serous neoplasms and higher-grade carcinomas are clonally related. Early genetic divergence, most evident in cases with TP53 mutations, suggests that high-grade transformation may be a relatively early molecular event.
目前的研究范式认为,输卵管前体是大多数卵巢高级别浆液性癌(HGSC)的起源。然而,有一种罕见的 HGSC 子集是通过与低级别浆液性卵巢肿瘤(即浆液性边界瘤和低级别浆液性癌)不同的途径发展而来的。人们对 HGSC 和其他分化不良的卵巢癌的另一种发展途径还不甚了解。为了阐明低分化浆液性肿瘤组织学转化的分子发病机制和进化轨迹,我们对 7 例浆液性边界瘤或低分化浆液性癌伴有同步或间期不确定/高级别癌的低分化和高级别成分进行了显微解剖全外显子组测序。在大多数病例中,与每种成分特有的体细胞突变相比,匹配的低分级和高分级肿瘤之间共享的体细胞突变相对较少(即系统发生树的树干短、树枝长)。在特定患者的所有肿瘤样本中都存在的干突变包括已知的低分化浆液性肿瘤的驱动因子:KRAS(G12D,n=4)、BRAF(G469A,n=1)、NF2(n=1)和 USP9X(n=1)。3例患者的HGSC转化与双等位基因失活的TP53突变有关,所有病例均伴有严重的核不典型性,并与全基因组拷贝数改变和等位基因失衡有关。TP53野生型肿瘤具有不同的形态学特征,包括具有中度核不典型性和高有丝分裂活性的未定级浆液性癌,但缺乏广泛的染色体不稳定性(2例),以及低分化癌(2例,包括1例高级别穆勒氏癌和1例具有肉瘤特征的未分化癌)。总之,同步和近同步的低级别浆液性肿瘤和高级别癌是克隆相关的。早期遗传分化在 TP53 突变的病例中最为明显,这表明高级别转化可能是一个相对较早的分子事件。
{"title":"Early Genetic Divergence of High-Grade Carcinomas Originating from Low-Grade Serous Ovarian Neoplasms","authors":"M. Herman Chui ,&nbsp;Qianqian Song ,&nbsp;Jiarun Zhu ,&nbsp;Yuchen Jiao ,&nbsp;Brant Wang ,&nbsp;Yeh Wang ,&nbsp;Tian-Li Wang ,&nbsp;Russell Vang ,&nbsp;Ie-Ming Shih","doi":"10.1016/j.modpat.2024.100629","DOIUrl":"10.1016/j.modpat.2024.100629","url":null,"abstract":"<div><div>The current paradigm implicates a fallopian tube precursor as the origin of most ovarian high-grade serous carcinomas (HGSCs). However, a rare subset of HGSCs develop via a distinct pathway from low-grade serous ovarian neoplasms (namely, serous borderline tumors and low-grade serous carcinoma). This alternate pathway for the development of HGSC and other poorly differentiated carcinomas of the ovary is not well understood. To elucidate the molecular pathogenesis and evolutionary trajectory of histologic transformation of low-grade serous neoplasms, we performed whole exome sequencing on microdissected low-grade and higher-grade components from 7 cases of serous borderline tumor or low-grade serous carcinoma associated with a synchronous or metachronous indeterminate/high-grade carcinoma. In most cases, there were relatively few somatic mutations shared between matched low-grade and higher-grade tumors compared with private mutations specific to each component (ie, phylogenetic trees with short trunks and long branches). Truncal mutations, present across all tumor samples from a given patient, included known drivers of low-grade serous neoplasms: <em>KRAS</em> (G12D, n = 4), <em>BRAF</em> (G469A, n = 1), <em>NF2</em> (n = 1), and <em>USP9X</em> (n = 1). Transformation to HGSC was associated with a <em>TP53</em> mutation with bi-allelic inactivation in 3 cases, all with severe nuclear atypia, and associated with genome-wide copy number alterations and allelic imbalances. <em>TP53</em>-wildtype tumors comprised a morphologic spectrum, which included indeterminate-grade serous carcinomas with moderate nuclear atypia and high mitotic activity, although lacking extensive chromosomal instability (n = 2) and poorly differentiated carcinomas (n = 2, including a high-grade Mullerian carcinoma and an undifferentiated carcinoma with sarcomatoid features). In summary, synchronous and metachronous low-grade serous neoplasms and higher-grade carcinomas are clonally related. Early genetic divergence, most evident in cases with <em>TP53</em> mutations, suggests that high-grade transformation may be a relatively early molecular event.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"38 1","pages":"Article 100629"},"PeriodicalIF":7.1,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142400755","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
POU4F3 Is a Sensitive and Specific Marker of Merkel Cell Carcinoma POU4F3 是梅克尔细胞癌敏感而特异的标记物
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-09-26 DOI: 10.1016/j.modpat.2024.100627
Paweł Karpinski , Javier E. Mendez-Pena , Cheng-Lin Wu , Ali Akalin , Kristine M. Cornejo , Yin P. Hung , Mai P. Hoang
Although of therapeutic importance, a single sensitive and specific immunostain to distinguish Merkel cell carcinoma (MCC) from mimics is not currently available. In addition, single tumor cells are difficult to detect in sentinel lymph node biopsy. Leveraging publicly available data sets of 9264 solid tumors and >600,000 single-cell transcriptomes, we identified POU4F3 to be a specific marker of MCC. Analyses of Pan-Cancer RNA bulk sequencing data of 24 tumor types from Tumor Cancer Genomic Atlas data sets as well as non-Tumor Cancer Genomic Atlas small cell lung carcinoma and MCC data sets confirmed POU4F3 specificity for MCC. Single-cell RNA-sequencing analyses also confirmed the lack of POU4F3 expression in lung small cell carcinoma as well as a variety of normal tissues. Nuclear POU4F3 immunohistochemical expression was noted in 98.7% of 153 MCCs and in only 1.7% of mimics (3 of 180 cases, including 95 small cell carcinomas, of which 55 were from lungs and the remainder from other sites). Three POU4F3-positive non-MCC cases were from lungs (2 cases) and vagina (1 case). All 153 tested MCC cases were negative for ASCL1, a key transcriptional regulator highly expressed in small cell lung carcinoma. NeuroD1 was seen in a subset of MCC cases (20.9%, 32/153). POU4F3 immunostain was performed on 29 sentinel lymph nodes, and strong POU4F3 nuclear expression facilitated the ease of metastasis detection, even single tumor cells. Our study built on prior works shows that POU4F3 is a sensitive and specific clinical marker of MCC.
梅克尔细胞癌(Merkel cell carcinoma,MCC)虽然具有重要的治疗意义,但目前还没有一种灵敏而特异的免疫印迹可用于区分梅克尔细胞癌(MCC)和拟态梅克尔细胞癌(MCC)。此外,前哨淋巴结活检也很难检测到单个肿瘤细胞。利用公开的 9264 个实体瘤数据集和超过 60 万个单细胞转录组,我们发现 POU4F3 是 MCC 的特异性标记物。对来自肿瘤癌症基因组图谱(TCGA)数据集以及非TCGA SCLC和MCC数据集的24种肿瘤类型的泛癌症RNA批量测序数据的分析证实了POU4F3对MCC的特异性。单细胞 RNA 测序分析也证实肺小细胞癌和各种正常组织中缺乏 POU4F3 表达。在153例MCC中,98.7%有核POU4F3免疫组化表达,只有1.7%的拟态MCC(180例中有3例,包括95例小细胞癌,其中55例来自肺部,其余来自其他部位)有核POU4F3免疫组化表达。3例POU4F3阳性的非MCC病例分别来自肺部(2例)和阴道(1例)。所有153例接受检测的MCC病例的ASCL1均为阴性,而ASCL1是一种在SCLC中高度表达的关键转录调节因子。NeuroD1可见于一部分MCC病例(20.9%,32/153)。对29个前哨淋巴结进行了POU4F3免疫染色,即使是单个肿瘤细胞,POU4F3的强核表达也有助于转移瘤的检测。我们的研究在先前研究的基础上表明,POU4F3是MCC的一个敏感而特异的临床标记物。
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引用次数: 0
A Comparative Genomic Study of Conventional and Undifferentiated Melanoma 传统和未分化黑色素瘤基因组对比研究
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-09-25 DOI: 10.1016/j.modpat.2024.100626
Grant M. Fischer, Navin R. Mahadevan, Jason L. Hornick, Christopher D.M. Fletcher, Eleanor Russell-Goldman
Undifferentiated melanoma, defined as melanoma that has lost all usual phenotypic and immunohistochemical characteristics of conventional melanoma, can pose significant diagnostic challenges. Molecular studies have advanced our understanding of undifferentiated melanoma by demonstrating that a subset of these tumors harbors known melanoma driver alterations in genes such as BRAF, NRAS, and NF1. However, there is a paucity of data describing genetic alterations that may distinguish undifferentiated melanoma from conventional melanoma. In this study, we directly compared the genomic profiles of undifferentiated melanoma to a cohort of conventional melanomas, including 14 undifferentiated melanoma cases (comprised of 2 primary cases, 2 cutaneous recurrences, and 10 metastases) and a cohort of 127 conventional melanomas including primary, recurrent, and metastatic cases. Targeted sequencing of 447 cancer-associated genes was performed, including identification of mutations and copy number alterations. NRAS was the most frequent melanoma driver in undifferentiated melanoma (8/14 cases, 57%), although notably, only 1 undifferentiated melanoma harbored an NRAS Q61R mutation. Compared with the conventional melanoma cohort, undifferentiated melanoma demonstrated statistically significant enrichment of pathogenic activating RAC1 mutations (6/14 total cases, 43%), including P29S (4/6 cases), P29L (1/6 cases), and D11E (1/6 cases). In addition to providing insight into the molecular pathogenesis of undifferentiated melanoma, these findings also suggest that RAS Q61R immunohistochemistry may have limited utility for its diagnosis. The presence of recurrent RAC1 mutations in undifferentiated melanoma is also notable as these alterations may contribute to mitogen-activated protein kinase pathway–targeted therapy resistance. Furthermore, the RAC1 alterations identified in this cohort have been shown to drive a melanocytic to mesenchymal switch in melanocytes, offering a possible explanation for the undifferentiated phenotype of these melanomas.
未分化黑色素瘤是指失去了传统黑色素瘤所有常见表型和免疫组化特征的黑色素瘤,它可能给诊断带来重大挑战。分子研究表明,未分化黑色素瘤中的一部分存在已知的黑色素瘤驱动基因改变,如 BRAF、NRAS 和 NF1,从而加深了我们对未分化黑色素瘤的了解。然而,描述可将未分化黑色素瘤与传统黑色素瘤区分开来的基因改变的数据还很少。在这项研究中,我们直接比较了未分化黑色素瘤与传统黑色素瘤的基因组图谱,包括14例未分化黑色素瘤(包括2例原发病例、2例皮肤复发病例和10例转移病例)和127例传统黑色素瘤(包括原发、复发和转移病例)。研究人员对 447 个癌症相关基因进行了靶向测序,包括突变和拷贝数改变(CNA)的鉴定。在未分化黑色素瘤中,NRAS是最常见的黑色素瘤驱动基因(8/14例,57%),但值得注意的是,只有一个未分化黑色素瘤携带NRAS Q61R突变。与常规黑色素瘤队列相比,未分化黑色素瘤在统计学上明显富含致病性活化RAC1突变(共6/14例,43%),包括P29S(4/6例)、P29L(1/6例)和D11E(1/6例)。这些发现不仅有助于深入了解未分化黑色素瘤的分子发病机制,而且还表明,RAS Q61R 免疫组化在诊断未分化黑色素瘤方面的作用可能有限。未分化黑色素瘤中反复出现的RAC1突变也值得注意,因为这些改变可能会导致丝裂原活化蛋白(MAP)激酶通路靶向治疗耐药。此外,在这组患者中发现的RAC1基因突变已被证明能促使黑色素细胞向间质细胞转变,从而为这些黑色素瘤的未分化表型提供了可能的解释。
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引用次数: 0
DNA Methylation Profiling of Salivary Gland Tumors Supports and Expands Conventional Classification 唾液腺肿瘤的 DNA 甲基化分析支持并扩展了传统分类。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-09-25 DOI: 10.1016/j.modpat.2024.100625
Philipp Jurmeister , Maximilian Leitheiser , Alexander Arnold , Emma Payá Capilla , Liliana H. Mochmann , Yauheniya Zhdanovic , Konstanze Schleich , Nina Jung , Edgar Calderon Chimal , Andreas Jung , Jörg Kumbrink , Patrick Harter , Niklas Prenißl , Sefer Elezkurtaj , Luka Brcic , Nikolaus Deigendesch , Stephan Frank , Jürgen Hench , Sebastian Försch , Gerben Breimer , Stephan Ihrler
Tumors of the major and minor salivary glands histologically encompass a diverse and partly overlapping spectrum of frequent diagnostically challenging neoplasms. Despite recent advances in molecular testing and the identification of tumor-specific mutations or gene fusions, there is an unmet need to identify additional diagnostic biomarkers for entities lacking specific alterations. In this study, we collected a comprehensive cohort of 363 cases encompassing 20 different salivary gland tumor entities and explored the potential of DNA methylation to classify these tumors. We were able to show that most entities show specific epigenetic signatures and present a machine learning algorithm that achieved a mean balanced accuracy of 0.991. Of note, we showed that cribriform adenocarcinoma is epigenetically distinct from classical polymorphous adenocarcinoma, which could support risk stratification of these tumors. Myoepithelioma and pleomorphic adenoma form a uniform epigenetic class, supporting the theory of a single entity with a broad but continuous morphologic spectrum. Furthermore, we identified a histomorphologically heterogeneous but epigenetically distinct class that could represent a novel tumor entity. In conclusion, our study provides a comprehensive resource of the DNA methylation landscape of salivary gland tumors. Our data provide novel insight into disputed entities and show the potential of DNA methylation to identify new tumor classes. Furthermore, in future, our machine learning classifier could support the histopathologic diagnosis of salivary gland tumors.
大唾液腺和小唾液腺肿瘤在组织学上包括多种多样且部分重叠的肿瘤,在诊断上经常具有挑战性。尽管最近在分子检测和肿瘤特异性突变或基因融合的鉴定方面取得了进展,但对于缺乏特异性改变的实体来说,鉴定其他诊断生物标志物的需求仍未得到满足。在这项研究中,我们收集了一个包含 20 种不同唾液腺肿瘤实体的 363 个病例的综合队列,并探索了 DNA 甲基化对这些肿瘤进行分类的潜力。我们能够证明大多数实体都显示出特定的表观遗传特征,并提出了一种机器学习算法,其平均平衡准确率达到了 0.991。值得注意的是,我们发现楔形腺癌在表观遗传学上有别于经典的多形性腺癌,这有助于对这些肿瘤进行风险分层。肌上皮瘤和多形性腺瘤形成了一个统一的表观遗传学类别,支持了具有广泛但连续形态谱的单一实体的理论。此外,我们还发现了一个组织形态异质但表观遗传学上不同的类别,它可能代表了一个新的肿瘤实体。总之,我们的研究提供了唾液腺肿瘤 DNA 甲基化图谱的全面资源。我们的数据提供了对有争议实体的新见解,并显示了 DNA 甲基化在识别新肿瘤类别方面的潜力。此外,我们的机器学习分类器将来还能支持涎腺肿瘤的组织病理学诊断。
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引用次数: 0
Spatial Cancer-Immune Phenotypes Predict Shorter Recurrence-Free Survival in the No Specific Molecular Profile Molecular Subtype of Endometrial Carcinoma 空间癌症--免疫表型预测了NSMP分子亚型子宫内膜癌较短的无复发生存期。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-09-24 DOI: 10.1016/j.modpat.2024.100624
Dario de Biase , Jacopo Lenzi , Claudio Ceccarelli , Thais Maloberti , Marco Grillini , Camelia Alexandra Coadǎ , Claudio Zamagni , Pierandrea De Iaco , Anna Myriam Perrone , Donatella Santini , Martin Köbel , Cheng-Han Lee , Giovanni Tallini , Antonio De Leo
Compartmentation of the immune response into 3 main spatial cancer-immune phenotypes (SCIs) – inflamed, excluded, and desert – has been proposed as the main predictor of response to immune checkpoint inhibitors in solid tumors. The objective of the study was to define and characterize the SCI in a consecutive series of 213 endometrial carcinomas (ECs) by correlating it with molecular subtypes, clinicopathologic features, and prognosis. Immunohistochemistry (IHC) and next-generation sequencing were used to assign surrogate molecular EC subtypes: POLE mutant (POLE), mismatch repair deficient (MMRd), TP53 mutant (p53abn), and no specific molecular profile (NSMP). Immune cell markers (CD20, CD3, CD8, CD68, PD-L1) were assessed by IHC on whole sections and quantified by digital image analysis to define the 3 SCIs. ECs were stratified into 4 molecular subtypes: 17 (8.0%) POLE, 68 (31.9%) MMRd, 42 (19.7%) p53abn, and 86 (40.4%) NSMP. SCI determination showed 105 (49.3%) inflamed, 62 (29.1%) desert, and 46 (25.6%) excluded tumors. The inflamed phenotype was more prevalent in MMRd (64.7%) and POLE (76.5%) subtypes compared with NSMP (45.3%) and p53abn (21.4%). SCI revealed a strong correlation with disease-free survival in NSMP tumors: inflamed 96.2%, desert 83.2%, and excluded 40.5%. The SCI prognostic impact was also maintained in NSMP cases treated with adjuvant therapy resulting in a significant difference in recurrence between the inflamed and excluded phenotypes. To simplify SCI determination, a subset of immune cell markers was selected as appropriate to define the 3 SCI patterns: high intraepithelial CD8 for the inflamed phenotype; CD68, CD20, and PD-L1 to discriminate between desert and excluded tumors. The integration of SCI into molecular classification could be a promising opportunity to improve the prognostic risk stratification of patients and may guide the therapeutic approach, particularly in the NSMP subtype. Thus, the different patterns of immune response are a new prognostic parameter in the NSMP subtype.
免疫反应分为三大空间癌症免疫表型(SCI)--炎症型、排斥型和荒漠型--已被认为是预测实体瘤对免疫检查点抑制剂反应的主要指标。本研究的目的是通过将SCI与分子亚型、临床病理特征和预后相关联来定义和描述连续213例子宫内膜癌(EC)的SCI。免疫组化(IHC)和下一代测序(NGS)被用来确定代用的分子亚型:POLE突变型(POLE)、错配修复缺陷型(MMRd)、TP53突变型(p53abn)和无特异性分子特征型(NSMP)。通过全切片 IHC 评估免疫细胞标记物(CD20、CD3、CD8、CD68、PD-L1),并通过数字图像分析进行量化,以确定三种 SCI。心肌细胞被分为四种分子亚型:17个(8.0%)POLE亚型、68个(31.9%)MMRd亚型、42个(19.7%)p53abn亚型和86个(40.4%)NSMP亚型。SCI 测定结果显示,105 例(49.3%)为炎性肿瘤,62 例(29.1%)为荒漠性肿瘤,46 例(25.6%)为排除性肿瘤。与NSMP(45.3%)和p53abn(21.4%)相比,炎症表型在MMRd(64.7%)和POLE(76.5%)亚型中更为普遍。SCI与NSMP肿瘤的DFS密切相关:炎症96.2%,荒漠83.2%,除外40.5%。在接受辅助治疗的NSMP病例中,SCI对预后的影响也保持不变,这导致炎性表型和除外表型之间的复发率存在显著差异。为了简化SCI的判定,研究人员选择了合适的免疫细胞标记物子集来定义三种SCI模式:上皮内CD8高的为炎症表型;CD68、CD20和PD-L1用于区分荒漠型和排除型肿瘤。将 SCI 纳入分子分类可能是改善患者预后风险分层的大好机会,并可指导治疗方法,尤其是在 NSMP 亚型中。因此,不同的免疫反应模式是NSMP亚型的一个新的预后参数。
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引用次数: 0
Histopathologic and Molecular Characterization of IDH-Mutant Prostatic Adenocarcinoma IDH 突变前列腺腺癌的组织病理学和分子特征。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2024-09-24 DOI: 10.1016/j.modpat.2024.100616
Benzion Samueli, Hikmat Al-Ahmadie, Ying-Bei Chen, Anuradha Gopalan, Judy Sarungbam, Satish K. Tickoo, Victor E. Reuter, Samson W. Fine, Jie-Fu Chen
Gain-of-function isocitrate dehydrogenase (IDH) mutations are pathogenically significant in many tumor types and are actionable in cholangiocarcinoma, low-grade glioma, and acute myeloid leukemia. Rare IDH mutations have been described in prostatic adenocarcinoma (PCa). Recent publications have suggested that psammomatous calcifications in PCa are associated with IDH1 mutations. In this retrospective study, we queried our institutional clinical sequencing database (cohort 1), and previously published PCa data sets in cBioPortal (cohort 2). Samples were stratified based on oncogenic hotspot IDH mutations at IDH1 R132 and IDH2 R140/R172, and other nonhotspot IDH mutations. Seventeen (0.4%) cases were identified from 4033 PCa cases in cohort 1 harboring mutually exclusive oncogenic hotspot IDH1 (N = 15, 1 of which was subclonal) or IDH2 (N = 2) mutations, and 20 (0.5%) cases had nonhotspot IDH1/2 mutations. A histologic review of 13 cases with IDH1 hotspot mutations and available material showed grade group 3 or higher disease. Immunohistochemistry was performed on cases with IDH1 hotspot mutations when possible and showed AR, PSA, PSMA, and NKX3.1 positive in all the 4 cases stained. In cohort 2, 9 cases (0.3%) harboring IDH1 hotspot mutations were identified from 2749 patients, and 9 cases carried nonhotspot IDH1/2 mutations. The combined cohorts of 23 PCa cases with clonal IDH1 hotspot mutations had no ETS fusions, SPOP hotspot mutations, and somatic or germline alterations in BRCA1/2, ATM, RB1, or AR; 19 cases with successful microsatellite instability testing were all microsatellite stable. Conversely, among 29 cases with nonhotspot IDH mutations, there were 4 with TMPRSS2::ERG fusions, 6 with SPOP hotspot mutations, and 10 with AR amplifications/hotspot mutations; 8 were microsatellite instability high. Notably, two cases with IDH1 hotspot mutations had psammomatous calcifications. Our findings provide evidence that IDH1 hotspot mutations serve as driver alterations in this rare yet distinct molecular subset of PCa. Further studies are warranted to correlate response to androgen deprivation and IDH inhibitors.
功能增益型异柠檬酸脱氢酶(IDH)突变在许多肿瘤类型中都具有重要的致病性,在胆管癌、低级别胶质瘤和急性髓性白血病中具有可操作性。前列腺腺癌(PCa)中也出现了罕见的 IDH 突变。最近有文献指出,PCa 中的炎性钙化与 IDH1 突变有关。在这项回顾性研究中,我们查询了本机构的临床测序数据库(队列 1)和之前在 cBioPortal 上发表的 PCa 数据集(队列 2)。样本按IDH1 R132和IDH2 R140/R172的致癌热点IDH突变以及其他非热点IDH突变进行了分层。在队列1的4033例PCa中,发现17例(0.4%)携带相互排斥的致癌热点IDH1(15例,其中1例为亚克隆)或IDH2(2例)突变,20例(0.5%)携带非热点IDH1/2突变。对13例IDH1热点突变病例的组织学检查和现有材料显示,病变为3级或3级以上。在可能的情况下,对有IDH1热点突变的病例进行了免疫组化,结果显示所有4例染色病例的AR、PSA、PSMA和NKX3.1均为阳性。在队列 2 中,从 2749 例患者中发现了 9 例(0.3%)携带 IDH1 热点突变的病例,另有 9 例携带 IDH1/2 非热点突变。23例IDH1热点突变的PCa患者中没有ETS融合、SPOP热点突变、BRCA1/2、ATM、RB1或AR的体细胞或种系改变;19例成功通过微卫星不稳定性(MSI)检测的病例均为微卫星稳定型。相反,在29例非热点IDH突变病例中,4例有TMPRSS2::ERG融合,6例有SPOP热点突变,10例有AR扩增/热点突变;8例为MSI-高。值得注意的是,只有两例IDH1热点突变病例出现了炎性钙化。我们的研究结果提供了证据,证明IDH1热点突变是这种罕见但独特的PCa分子亚群的驱动性改变。还需要进一步研究雄激素剥夺和IDH抑制剂的相关反应。
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Modern Pathology
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