Journal of Computational Chemistry最新文献

Low-dimensional nanomaterials show great potential for developing semiconducting materials due to their distinct electronic, optical, and mechanical properties. In this study, we constructed various one-dimensional ZnSe nanotubes and investigated their transport and photoresponse properties by using the density functional theory (DFT) and non-equilibrium Green's function (NEGF) method. Under bias regulation, one-dimensional tetragonal ZnSe nanotube curled along the diagonal can reach a current of 111.3 μA at a bias of 4.0 eV. It is worth noting that for all considered photon energies, the photocurrent exhibits a cosine dependence on the polarization angle, which is consistent with the photogalvanic effect. The results show that our constructed ZnSe nanotubes have potential for applications in electronic and optoelectronic devices.

In this study, we investigated the potential energy surface of BXY₃ (X = B, Al, Ga; Y = C, Si, Ge) clusters employing a few global optimization techniques. Remarkably, the global minimum structure obtained for most of the cases revealed a planar tetracoordinate boron atom, shedding light on the inherent stability of this motif. A comparative analysis of the performance of the different global optimization techniques employed is presented, offering insights into their efficacy. Additionally, the overall stability of the obtained global minimum structures is thoroughly examined through Atom-centered Density Matrix Propagation (ADMP) simulations spanning 20 ps at temperatures 300 and 500 K. The aromaticity of the respective clusters is also assessed via Nucleus Independent Chemical Shift (NICS) and Isochemical Shielding Surface (ICSS) calculations, providing valuable information regarding their electronic structure and stability. This comprehensive theoretical investigation contributes to our understanding of the structural properties of these clusters, with implications for their potential applications in various fields of chemistry.

The BCR-ABL tyrosine kinase which is responsible for the pathogenesis of chronic myeloid leukemia (CML), has emerged as a promising therapeutic target. To address this issue, we employed a comprehensive computational approach integrating virtual screening, molecular dynamics (MD) simulations, and MM-GBSA (Molecular Mechanics/Generalized Born Surface Area) analysis to identify potential inhibitors and elucidate their binding mechanisms. Initially, virtual screening was conducted on 994 compounds from the ZINC database and, these compounds were docked against wildtype and T315I mutant ABL1 for the Type I and Type II ABL1 kinase inhibition mechanisms. In our molecular docking analysis for Type I inhibition, compound 911 demonstrated notable affinity towards the wildtype ABL1, with a binding energy of −14.91 kcal/mol, while compound 972 showed significant binding affinity towards the mutant ABL1, with a binding energy of −14.27 kcal/mol. In the Type II inhibition mechanism, the compounds with the highest binding affinity were compound 261 in wildtype ABL1 with −17.05 kcal/mol binding energy and compound 966 to the mutant ABL1 with a binding energy of −16.29 kcal/mol. Furthermore, analyses of MD simulations and MM/GBSA binding free energy (ΔG) were performed for target proteins with compounds, that exhibited the most favorable binding affinities with target proteins. The selected hit compounds showed ΔG scores ranging from −118.09 to −74.85 kJ/mol in both wildtype and mutant ABL1. Considering all in silico studies performed, it can be inferred that the identified molecules hold promise as potential candidates for drug design aimed at targeting CML.

In this work, we present a density functional calculation of the structural, electronic, and mechanical properties of cubic double halide perovskites Rb₂OsX₆ (X = Cl, Br, and I). Our results show that these compounds are stable in the ferromagnetic phase with lattice parameters, bulk modulus, and their first-pressure derivatives in good agreement with other available theoretical data. The negative values of cohesive energy and formation energy, along with the absence of negative or imaginary frequencies in the phonon spectrum, confirm the mechanical stability of all the compounds. The Curie temperature (Tc) is determined using a Heisenberg model in the mean-field approximation. We obtained a half-metallic character for all compounds, making them promising materials for spintronic applications. The magnetic properties indicate that the Os atoms in all compounds are responsible for the magnetism, while the positive exchange constants suggest a strong preference for ferromagnetic alignment. This indicates a stable ferromagnetic phase and potential applications in spintronics. The mechanical properties demonstrate that the compounds studied are isotropic and ductile.

Ethanethiol, also known as ethyl mercaptan, is an organosulfur compound that appears as a colorless liquid with a distinctive odor. It has been detected in the interstellar medium, and its self-association has been the subject of a few known experimental studies, where the SH vibrational mode was used. However, unlike the analogous ethanol dimer, the ethanethiol dimer has not been thoroughly explored theoretically. In this study, ethanethiol and dimers were investigated using the MP2 method with various basis sets to determine the properties and stability of these structures. For the monomer, both trans and gauche structures were computed, with the gauche conformer being more stable, consistent with the available data in the literature. Local mode decomposition analysis of monomers showed that the CH₂ rocking mode, associated with the CSH bending, is present only for the gauche isomer aligning with the experimental assignments. Furthermore, eight stable dimer configurations were identified and categorized into three groups: trans–trans, gauche–gauche, and trans–gauche isomers. Among these, the trans–gauche isomer was found to be the most stable. Dispersion is the dominant term for the ethanethiol dimer.

Assembling antiferromagnetic (AFM) clusters is perhaps an effective way to construct AFM materials to meet the increasing demand for micro/nano spintronic devices, which promotes the exploration of AFM clusters. Herein, we unveil the structural evolution, electronic, and AFM properties of Cr₂Pb_n (n = 3–20) clusters based on density functional theory (DFT) calculations. It is found that the Cr impurities prefer the central axis positions of the skeleton in these Cr₂Pb_n (n = 3–20) clusters. For sizes n ≤ 6, their structures are exohedral structures with the two Cr atoms exposed outside, endohedral Cr@Pb_n configuration with one Cr atom interior appears at size 7, and the resulting endohedral structure is then gradually covered by the additional Pb atoms to form endohedral Cr₂@Pb_n structures for n = 15–20. All Cr₂Pb_n clusters are antiferromagnets, except for the ferrimagnetic Cr₂Pb₁₁ with a net magnetic moment of 2 μ_B. The discovered stable Cr₂Pb₁₇ cluster can assemble into dimers and trimers while maintaining its geometric structure and AFM properties, indicating the potential of becoming structural units for cluster-assembled AFM materials.