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Ten new species of Leucoagaricus and Leucocoprinus from Beijing: Revealing rich diversity in temperate regions. 北京Leucoagaricus和Leucocoprinus十新种:显示温带地区丰富的多样性。
IF 4.4 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-02-18 eCollection Date: 2025-01-01 DOI: 10.1080/21501203.2025.2457330
Jia-Xin Li, Bin Cao, Mao-Qiang He, Xin-Yu Zhu, Dong-Mei Liu, Rui-Lin Zhao

Leucoagaricus and Leucocoprinus (Agaricaceae) exhibit global distribution, with notable abundance and diversity in tropical and subtropical regions and play as decomposers in the ecosystem. However, a recent survey of macrofungi in the urban area of Beijing resulted in the discovery of a rich diversity of these fungi. In this study, 88 Leucoagaricus and Leucocoprinus specimens have been collected from Beijing. The following morphological examination and phylogenetic analysis based on ITS and nrLSU sequence data, complemented by a four-gene dataset (ITS, nrLSU, rpb2, and tef1-α) identified them into 22 species, including eight new species in Leucoagaricus: La. bulbosus, La. centrobrunneolus, La. cinereibisporus, La. luteocanus, La. subcandidus, La. subnivalis, La. testaceumbonatus, and La. xantholepis, and two new species of Leucocoprinus: Lc. beijingensis and Lc. digitatocystis. Detailed descriptions of all proposed new species are provided. Additionally, three new combinations in Leucocoprinus were proposed, and four Leucocoprinus names were reinstated. This research expands the understanding of Leucoagaricus and Leucocoprinus species diversity, especially the distribution in temperate regions. The rich species diversity of those mushrooms also indicated urban habitats specially urban green land, despite being heavily influenced by human activity, may serve as unexpected hotspots of biodiversity because they can provide a favourable ecological environment.

锦鸡科锦鸡属(Leucoagaricus)和锦鸡属(Leucocoprinus)分布全球,在热带和亚热带地区具有显著的丰度和多样性,在生态系统中起着分解者的作用。然而,最近对北京市区大型真菌的调查发现了这些真菌的丰富多样性。本研究在北京采集了88种白松鸡和白松鸡标本。基于ITS、nrLSU、rpb2和tef1-α 4个基因数据集的形态学检查和系统发育分析将其鉴定为22个种,其中8个为Leucoagaricus: La的新种。bulbosus拉。centrobrunneolus拉。cinereibisporus拉。luteocanus拉。subcandidus拉。subnivalis拉。testaceumbonatus和La。黄耳蝶属和二新种:Lc。北京和Lc。digitatocystis。所有提出的新物种的详细描述都提供了。此外,还提出了3个新组合,并恢复了4个白鳍鲨的名称。本研究扩大了对Leucoagaricus和Leucocoprinus物种多样性的认识,特别是在温带地区的分布。这些蘑菇丰富的物种多样性也表明,尽管受到人类活动的严重影响,但城市栖息地特别是城市绿地可能成为意想不到的生物多样性热点,因为它们可以提供良好的生态环境。
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引用次数: 0
Dermatophytes adaptation to the human host exemplified by Microsporum canis. 皮肤真菌对人类宿主的适应,以犬小孢子菌为例。
IF 4.4 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-02-16 eCollection Date: 2025-01-01 DOI: 10.1080/21501203.2025.2461720
Xin Zhou, Ricardo Belmonte, Chao Tang, Vania Aparecida Vicente, Sybren de Hoog, Peiying Feng

Dermatophytes are a taxonomic group of keratinophilic fungi that engender cutaneous infections across human and animal populations. The zoophilic species Microsporum canis, which exhibits a widespread distribution, predominantly affects domesticated felines and canines and has recently been associated with an increased risk of human adaptation. This study conducted a comparative genome analysis, validating the adaptive expression of 12 relevant genes through neutrality tests and selection pressure analyses, with a particular focus on the evolutionary mechanisms underlying the transition from zoophilic to anthropophilic Microsporum. The results demonstrated a high degree of consistency in the nuclear and mitochondrial genomes among the three Microsporum species, while significant differences were observed in protein domains. Notably, the anthropophilic species M. audouinii and M. ferrugineum exhibited more gene duplication events and expansions in domains such as MFS and Zn2Cys6 transcription factors. Among the 138 identified genes, specific protease subfamilies (e.g. S08A, M77, S53) and CAZy subfamilies (e.g. GH18, AA1, AA3) showed strong ecological correlations with either zoophilic or anthropophilic lifestyles. The key functions of these genes from these subfamilies focus on modulating sporulation, endoproteases, lipolysis, pH regulatory adaptability, chitinase, and conidial pigment biosynthesis. Microenvironmental factors such as pH, lipid concentration, and osmolarity significantly influenced the expression of these key genes. Anthropophilic strains demonstrated higher tolerance to acidic pH and enhanced keratinase activity in lipid-rich environments, with M. ferrugineum exhibiting the strongest osmotic tolerance. These findings highlight the inherent evolutionary dynamics and adaptive mechanisms of dermatophytes, providing valuable insights into the pathogenicity of Microsporum.

皮肤真菌是一组嗜角真菌,在人类和动物种群中引起皮肤感染。嗜兽物种犬小孢子虫分布广泛,主要影响家养猫科动物和犬科动物,最近与人类适应风险增加有关。本研究进行了基因组比较分析,通过中性测试和选择压力分析验证了12个相关基因的适应性表达,并特别关注了从嗜兽性到嗜人性小孢子虫过渡的进化机制。结果表明,三种小孢子菌的核基因组和线粒体基因组高度一致,而蛋白质结构域存在显著差异。值得注意的是,亲人类物种M. audouinii和M. ferrugineum在MFS和Zn2Cys6转录因子等结构域上表现出更多的基因复制事件和扩增。在138个已鉴定的基因中,特定蛋白酶亚家族(如S08A、M77、S53)和CAZy亚家族(如GH18、AA1、AA3)与嗜动物或嗜人的生活方式表现出很强的生态相关性。这些亚家族基因的主要功能是调控孢子形成、内源性蛋白酶、脂肪分解、pH调节适应性、几丁质酶和分生孢子色素的生物合成。微环境因素如pH、脂质浓度和渗透压显著影响这些关键基因的表达。嗜人菌株对酸性pH值的耐受性更高,在富含脂质的环境中角化酶活性增强,其中M. ferrugineum表现出最强的渗透耐受性。这些发现突出了皮肤真菌固有的进化动力学和适应机制,为小孢子菌的致病性提供了有价值的见解。
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引用次数: 0
Correction. 修正。
IF 4.4 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-02-06 eCollection Date: 2025-01-01 DOI: 10.1080/21501203.2025.2461914

[This corrects the article DOI: 10.1080/21501203.2024.2354273.].

[这更正了文章DOI: 10.1080/21501203.2024.2354273.]。
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引用次数: 0
Correction. 修正。
IF 4.4 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-02-06 eCollection Date: 2025-01-01 DOI: 10.1080/21501203.2025.2461915

[This corrects the article DOI: 10.1080/21501203.2024.2342519.].

[这更正了文章DOI: 10.1080/21501203.2024.2342519.]。
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引用次数: 0
Correction. 修正。
IF 4.4 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-02-06 eCollection Date: 2025-01-01 DOI: 10.1080/21501203.2025.2461912

[This corrects the article DOI: 10.1080/21501203.2024.2342521.].

[这更正了文章DOI: 10.1080/21501203.2024.2342521.]。
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引用次数: 0
The genus Thaxterogaster (Cortinariaceae): phylogeny and species diversity in Western China. 标题中国西部山菖蒲属植物的系统发育与物种多样性。
IF 4.4 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-02-03 eCollection Date: 2025-01-01 DOI: 10.1080/21501203.2024.2441178
Zi-Rui Wang, Song-Yan Zhou, Fei-Fei Liu, Zhu L Yang

Thaxterogaster is the second largest genus within the family Cortinariaceae, comprising nearly two hundred species worldwide. However, the diversity of the genus in China remains largely unknown. Based on morphological evidence and phylogenetic inference of a five-locus dataset, one hundred twelve species belonging to seven subgenera and 23 sections of Thaxterogaster were analysed. We here describe 15 of those present in China, including 8 species new to science, namely T. crassimultiformis, T. lavendulaceus, T. flavocapitatus, T. pallidopurpurascens, T. atricapitatus, T. cupreus, T. sordidus, T. alboparvus, and 1 species new to China, viz. T. indopurpurascens. Two new combinations, Thaxterogaster subgenus Vibratiles and Thaxterogaster tenuipes, are further introduced. Taxonomic descriptions and a key to the species of Thaxterogaster in Western China are provided.

龙舌兰属是龙舌兰科的第二大属,在世界范围内有近200种。然而,该属在中国的多样性在很大程度上仍然未知。基于5个基因座数据的形态学证据和系统发育推断,对大腹蛇属7个亚属、23个断面的112个种进行了分析。本文介绍了中国现有的15种,其中8种为新种,分别为:粗多形T.、薰衣草T.、黄头T.、苍白T.、无毛T.、铜头T.、sordidus、白纹T.,以及1种为中国新种,即indopurpurascens。进一步介绍了两个新的组合,即振动蛇腹蛇亚属(Thaxterogaster亚属)和蛇腹蛇(Thaxterogaster tenupes)。本文给出了中国西部大腹蛇属植物的分类描述和物种检索表。
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引用次数: 0
Phylogeny of Geoglossomycetes with species diversity in China. 标题中国地舌菌的系统发育与物种多样性。
IF 4.4 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-02-03 eCollection Date: 2025-01-01 DOI: 10.1080/21501203.2024.2436000
Hongli Su, Kevin D Hyde, Qing Cai, Wenyan Chen, Fatimah Al-Otibi, K W Thilini Chethana, Zhu L Yang, Qi Zhao

Geoglossomycetes is a class within the phylum Ascomycota that accommodates a single order and a single family, comprising nine genera. Geoglossomycetes is traditionally referred to as "earth tongues". The class is characterised by tongue-shaped to clavate, stipitate, black ascomata covered with or without black setae, a swollen ascigerous portion, a cylindric stipe, filiform, septate paraphyses, cylindrical-clavate, 4-8-spored asci, and filiform or falciform, multi-septate, dark brown to hyaline ascospores. In this study, we examined 34 samples from four genera in China. Based on ecological comparisons, morphological studies, and phylogenetic analyses inferred from the combined internal transcribed spacer (ITS) regions and the large subunit of the ribosomal RNA gene (LSU), we introduce ten new species of Geoglossomycetes, and identify four known species. In addition, we summarise the sexual morph characters of all species within the two largest genera, Geoglossum and Trichoglossum.

子囊菌是子囊菌门内的一个纲,它包含一个目和一个科,包括九个属。Geoglossomycetes传统上被称为“地球舌头”。本纲的特点是舌形到棍棒状,具柄,黑色的子囊孢子被黑色或无黑色刚毛覆盖,肿胀的有刚毛的部分,圆柱形的柱柄,丝状的,隔的,圆柱状的,4-8孢子的子囊孢子,丝状或镰状的,多隔的,深棕色到透明的子囊孢子。在这项研究中,我们检测了中国4个属的34个样本。基于生态比较、形态学研究以及从ITS区域和核糖体RNA基因大亚基推断的系统发育分析,我们引入了10个新物种,并鉴定了4个已知物种。此外,我们还总结了两个最大属——毛舌草和毛舌草的两性形态特征。
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引用次数: 0
Deubiquitinase Ubp5 is essential for pulmonary immune evasion and hematogenous dissemination of Cryptococcus neoformans. 去泛素酶Ubp5对新型隐球菌的肺免疫逃避和血液传播至关重要。
IF 4.4 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-02-03 eCollection Date: 2025-01-01 DOI: 10.1080/21501203.2025.2453739
Guizhen Wang, Yan Liu, Qianyu Li, Changhui Wang, Wei Fang

The dynamic interplay between pathogens and host immune system determines the outcome of fungal infections. This study investigates the role of Ubp5 in modulating host defenses during Cryptococcus neoformans H99 infections. Ubp5 deletion significantly reduces both pulmonary invasion and extrapulmonary dissemination, resulting in prolonged survival and decreased fungal burdens in mice. Attenuated virulence is closely associated with enhanced host immune responses, rather than diminished pathogen fitness alone. Histopathological and leukocyte analyses revealed a shift towards protective adaptive immune responses in ubp5Δ-infected lungs, characterized by lymphocyte-dominated inflammatory infiltration and an increased Th1/Th17 cytokine response. Under host-associated conditions, ubp5Δ mutants exhibited morphological changes, including distorted shapes and cell wall heterogeneity, alongside defects in key virulence factors such as the polysaccharide capsule and melanin. These changes likely promote exposure of immunostimulatory cell wall components, enhancing host immunity. Additionally, Ubp5 deletion resulted in a significant reduction in intracellular ribosomal particles in C. neoformans, which likely impairs protein synthesis, contributing to reduced growth and pathogenic fitness in vivo. These findings underscore the pivotal role of Ubp5 in maintaining cryptococcal virulence and suggest that targeting Ubp5 could enhance host immunity against cryptococcosis by promoting protective immune responses and limiting fungal dissemination.

病原体和宿主免疫系统之间的动态相互作用决定了真菌感染的结果。本研究探讨了Ubp5在新型隐球菌H99感染过程中调节宿主防御的作用。Ubp5缺失显著降低了肺侵袭和肺外传播,延长了小鼠的生存时间,降低了真菌负担。毒力的减弱与宿主免疫反应的增强密切相关,而不是病原体适应性的降低。组织病理学和白细胞分析显示ubp5Δ-infected肺向保护性适应性免疫反应转变,其特征是淋巴细胞主导的炎症浸润和Th1/Th17细胞因子反应增加。在宿主相关条件下,ubp5Δ突变体表现出形态变化,包括形状扭曲和细胞壁异质性,以及多糖胶囊和黑色素等关键毒力因子的缺陷。这些变化可能促进免疫刺激细胞壁成分的暴露,增强宿主免疫力。此外,Ubp5缺失导致新生C.细胞内核糖体颗粒显著减少,这可能会损害蛋白质合成,导致体内生长和致病适应性降低。这些发现强调了Ubp5在维持隐球菌毒力方面的关键作用,并表明靶向Ubp5可以通过促进保护性免疫反应和限制真菌传播来增强宿主对隐球菌病的免疫力。
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引用次数: 0
Diversity and functions of fungal VOCs with special reference to the multiple bioactivities of the mushroom alcohol. 真菌挥发性有机化合物的多样性和功能,特别是蘑菇醇的多种生物活性。
IF 4.4 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-02-02 eCollection Date: 2025-01-01 DOI: 10.1080/21501203.2025.2453717
Guohua Yin, Geromy G Moore, Joan Wennstrom Bennett

Different species of fungi usually share many common pathways but they also have some unique metabolic pathways (e.g. those for specialised metabolites). It is not clear how gene expression patterns significantly contribute to the creation of diverse volatile compounds. Based on the research of most VOCs, the functions of different fungal volatile compounds are mainly as follows: inhibitory or synergistic effects on other microorganisms, promoting growth in plants or inducing a defensive response in crops, and participating in the material cycle or affecting the interactions between organisms in the ecosystem. Approximately three hundred VOCs have been identified from fungi. According to their chemical properties, the major categories of fungal VOCs are terpenoids, aromatic compounds, alcohols, alkanes, esters, aldehydes, ketones, and heterocyclic compounds. The eight-carbon alcohol (1-octen-3-ol) is one of the most characteristic fungal VOC. This abundantly produced VOC results from the breakdown of linoleic acid and causes a distinctive mushroom-like odour. Consequently, its presence has been utilised as a signal of fungal growth. It is also produced by certain plants and functions as a semiochemical for numerous arthropods. The use of Drosophila melanogaster (fruit flies) as a model for testing the toxicity of fungal VOCs showed that some VOCs delayed metamorphosis and/or caused fly death at certain concentrations. When Drosophila was cultivated in an atmosphere shared with VOC mixtures released from growing cultures of several medically important fungi, including Aspergillus fumigatus, toxicity was observed. Additionally, we propose that components of the genetic immune system of D. melanogaster are engaged in the toxicity of fungal VOCs mainly via the elicitation of the Toll pathway. The presence of 1-octen-3-ol, for example, was associated with higher levels of toxicity in the fruit fly bioassay. In this review, we summarise (1) the diversity and functions of different fungal VOCs, (2) the biosynthesis and bioactive characteristics of 1-octen-3-ol, and (3) the use of D. melanogaster as a genetic model to assess the health impacts of fungal VOCs.

不同种类的真菌通常有许多共同的代谢途径,但它们也有一些独特的代谢途径(例如专门代谢物的代谢途径)。目前尚不清楚基因表达模式如何显著促进各种挥发性化合物的产生。基于对大多数VOCs的研究,不同真菌挥发性化合物的功能主要有:对其他微生物的抑制或协同作用,促进植物生长或诱导作物防御反应,参与物质循环或影响生态系统中生物之间的相互作用。已经从真菌中鉴定出大约300种挥发性有机化合物。根据其化学性质,真菌挥发性有机化合物主要有萜类、芳香族化合物、醇类、烷烃、酯类、醛类、酮类和杂环化合物。八碳醇(1-辛烯-3-醇)是真菌中最具特征的挥发性有机化合物之一。这种大量产生的挥发性有机化合物是由亚油酸分解产生的,并引起一种独特的蘑菇味。因此,它的存在被用作真菌生长的信号。它也由某些植物产生,并作为许多节肢动物的符号化学物质。用果蝇作为测试真菌挥发性有机化合物毒性的模型表明,某些挥发性有机化合物在一定浓度下会延迟果蝇的蜕变和/或导致果蝇死亡。当果蝇在与几种医学上重要的真菌(包括烟曲霉)生长培养物释放的VOC混合物共享的气氛中培养时,观察了毒性。此外,我们提出黑胃d.m anogaster遗传免疫系统的成分主要通过诱导Toll通路参与真菌VOCs的毒性。例如,在果蝇生物测定中,1-辛烯-3-醇的存在与较高的毒性水平有关。本文综述了(1)真菌挥发性有机化合物的多样性和功能,(2)1-辛烯-3-醇的生物合成和生物活性特征,以及(3)利用黑胃霉作为遗传模型来评估真菌挥发性有机化合物对健康的影响。
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引用次数: 0
Global diversity and phylogeny of Incrustoporiaceae (Polyporales, Basidiomycota) with an emphasis on Skeletocutis. 壳菌科(多孢子目,担子菌科)的全球多样性和系统发育,重点研究了壳菌属。
IF 4.4 2区 生物学 Q1 MYCOLOGY Pub Date : 2025-01-26 eCollection Date: 2025-01-01 DOI: 10.1080/21501203.2024.2448145
Zhan-Bo Liu, Hong-Gao Liu, Josef Vlasák, Genevieve M Gates, Zhen-Hao Li, Yu-Cheng Dai, Yuan Yuan

This study presents the taxonomy and phylogeny of the family Incrustoporiaceae, based on comprehensive phylogenetic analyses utilising multi-gene data, including the internal transcribed spacer regions (ITS) and the large subunit of the nuclear ribosomal RNA gene (nLSU), for the accepted genera within Incrustoporiaceae. Additionally, a separate phylogenetic analysis focusing on the Skeletocutis nivea complex was performed using ITS sequences. A total of 20 new species within the genus Skeletocutis are described, namely Skeletocutis crystallina, S. cunninghamiae, S. cylindrica, S. ellipsoidea, S. flavipora, S. latemarginata, S. liangdongii, S. monocotyledona, S. montanus, S. neoalbomarginata, S. oceanica, S. ochraceocarpa, S. quercicola, S. sinica, S. sinoalbomarginata, S. sinochrysella, S. subamorpha, S. subdiluta, S. subkrawtzewii, and S. sublilacina. Detailed illustrated descriptions, voucher specimens, hosts, distribution, diagnoses, and remarks are provided for these 20 new species. Additionally, two new combinations are proposed: S. minutula and Tyromyces subodorus. Notably, our discoveries of S. oceanica and S. subdiluta in Australia underscore the significance of expanding research on Skeletocutis diversity in the Southern Hemisphere, where reports are scarce. Phylogenetic analyses also clarified the taxonomic positions of Skeletocutis and Tyromyces within the Incrustoporiaceae family, showing that Tyromyces is nested within the polyphyletic Skeletocutis clade. The morphological distinctions between Skeletocutis and Tyromyces, as well as between Skeletocutis and Sidera, are also discussed.

本研究利用多基因数据,包括内部转录间隔区(ITS)和核糖体RNA基因大亚基(nLSU),对inrustoporiaceae科的分类和系统发育进行了全面的系统发育分析。此外,利用ITS序列对nivea Skeletocutis复合体进行了单独的系统发育分析。本文共记录了20个新种,即晶体骨骨、cunninghamiae骨骨、圆柱骨、椭球骨、黄骨骨、latemarginata骨骨、梁东骨、单子叶骨、montanus骨骨、neoalbomarginata骨骨、oceanica骨骨、ochraceocarpa骨骨、quercicola骨骨、中国骨骨、sinonyalbomarginata骨骨、sinochrysella骨骨、subamorpha骨、subdiluta骨、subkrawtzewii骨骨和subblilacina骨骨。本文对这20种新种进行了详细的图解描述、凭证标本、寄主、分布、诊断和注释。此外,还提出了两个新的组合:S. minutula和Tyromyces subbodorus。值得注意的是,我们在澳大利亚发现了S. oceanica和S. subdiluta,这突出了在南半球扩大对骨裂菌多样性研究的重要性,在南半球,报告很少。系统发育分析还明确了骨裂菌属和酪霉菌属在蚁科中的分类位置,表明酪霉菌属嵌套在多系骨裂菌属分支中。本文还讨论了骨裂科和酪霉菌科以及骨裂科和Sidera的形态学差异。
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引用次数: 0
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