Nature ecology & evolution最新文献

Genome-wide premortem DNA methylation patterns can be computationally reconstructed from high-coverage DNA sequences of ancient samples. Because DNA methylation is more conserved across species than across tissues, and ancient DNA is typically extracted from bones and teeth, previous works utilizing ancient DNA methylation maps focused on studying evolutionary changes in the skeletal system. Here we suggest that DNA methylation patterns in one tissue may, under certain conditions, be informative on DNA methylation patterns in other tissues of the same individual. Using the fact that tissue-specific DNA methylation builds up during embryonic development, we identified the conditions that allow for such cross-tissue inference and devised an algorithm that carries it out. We trained the algorithm on methylation data from extant species and reached high precisions of up to 0.92 for validation datasets. We then used the algorithm on archaic humans, and identified more than 1,850 positions for which we were able to observe differential DNA methylation in prefrontal cortex neurons. These positions are linked to hundreds of genes, many of which are involved in neural functions such as structural and developmental processes. Six positions are located in the neuroblastoma breaking point family (NBPF) gene family, which probably played a role in human brain evolution. The algorithm we present here allows for the examination of epigenetic changes in tissues and cell types that are absent from the palaeontological record, and therefore provides new ways to study the evolutionary impacts of epigenetic changes.

Anthropogenic land-use change is an important driver of global biodiversity loss and threatens public health through biological interactions. Understanding these landscape–ecological effects at local scales will help achieve the United Nations Sustainable Development Goals by balancing urbanization, biodiversity and the spread of infectious diseases. Here, we address this knowledge gap by analysing a 43-year-long monthly dataset (1980–2022) of synanthropic rodents in Central China during intensive land-use change. We observed a notable increase in the mean patch size, coinciding with a substantial change in rodent community composition and a marked decline in rodent diversity; eight of the nine local rodent species experienced near-extirpation. Our analysis reveals that these irregular species replacements can be attributed to the effect of land consolidation on species competition among rodents, favouring striped field mice, a critical reservoir host of Hantaan virus (HTNV). Consequently, land consolidation has facilitated the proliferation of striped field mice and increased the prevalence of HTNV among them. This study highlights the importance of considering both direct and indirect effects of anthropogenic activities in the management of biodiversity and public health.

Australia has proposed a legislated market for biodiversity based on an existing carbon credits scheme which generates Australian carbon credit units (ACCU) from land-based projects. This provides a unique opportunity to assess the potential for markets to benefit biodiversity. We assessed the extent to which projects under the ACCU scheme overlap potential threatened species habitat, compared that to overlap afforded by protected areas, and compared the ability of different project types to deliver potential benefits to species most impacted by habitat loss. Projects are primarily located in low-cost, marginal arid lands, a pattern that reflects that of the protected area estate. Projects are smaller and fewer in number in more productive lands close to human populations. These lands also overlap most threatened species habitat, hence those species most in need of habitat restoration are the least likely to have their habitat restored under the ACCU scheme. Projects, however, do overlap the geographic range of 32% of the 1,660 threatened species assessed, including for 275 species with <17% of their range in protected areas. Biodiversity markets must incentivize actions in areas of high biodiversity value underpinned by regulations that align with national priorities for biodiversity conservation.