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Comparative population genomics reveals convergent adaptation across independent origins of avian obligate brood parasitism 比较种群基因组学揭示了鸟类专性雏鸟寄生的趋同适应。
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-12 DOI: 10.1038/s41559-025-02919-w
Ekaterina Osipova, Christopher N. Balakrishnan, Claire N. Spottiswoode, Jess Lund, Jeffrey M. DaCosta, Mark E. Hauber, Wesley C. Warren, Michael D. Sorenson, Timothy B. Sackton
Parental care evolved as a strategy to enhance offspring survival at the cost of reduced adult survival and fecundity. While 99% of bird species provide parental care, obligate brood parasites circumvent this trade-off by exploiting the parental behaviours of other species. This radical life-history shift occurred independently seven times in birds, offering an outstanding opportunity to test for convergent adaptation. To investigate genomic adaptations underlying this transition, we analyse population resequencing data from five brood-parasitic species across three independent origins of brood parasitism—three parasitic finches, a honeyguide and a cowbird—alongside related non-parasitic outgroups. Using the McDonald–Kreitman framework, we find evidence for adaptation in genes involved in sperm function in multiple parasitic clades, but not in the matched, non-parasitic outgroups, consistent with evidence for increased male–male competition in parasitic lineages following the loss of parental care. We also detect selective sweeps near genes associated with nervous system development in parasitic lineages, perhaps associated with improved spatial cognition that aids brood parasites in locating and monitoring host nests. Finally, we detect more selective sweeps in the genomes of host specialist brood parasites as compared to non-parasitic outgroups, perhaps reflecting ongoing host–parasite coevolutionary arms races. Population genetics analysis in a phylogenetic framework shows convergent evolution in the genomes of five brood-parasitic species, including selection on genes involved in spermatogenesis, sperm function and nervous system development.
亲代抚育是一种以降低成虫存活率和繁殖力为代价来提高后代存活率的策略。虽然99%的鸟类提供亲代照顾,但专性寄主通过利用其他物种的亲代行为来规避这种权衡。这种激进的生活史转变在鸟类中独立发生了七次,为测试趋同适应提供了绝佳的机会。为了研究这种转变背后的基因组适应性,我们分析了来自三种独立的幼虫寄生起源的五种幼虫寄生物种的种群重测序数据——三种寄生雀、一种蜜䴕和一种牛鹂,以及相关的非寄生外群。利用McDonald-Kreitman框架,我们在多个寄生分支中发现了与精子功能相关的基因适应的证据,但在匹配的非寄生外群中却没有,这与在失去亲代照顾后寄生谱系中雄性-雄性竞争增加的证据一致。我们还在寄生谱系中发现了与神经系统发育相关的基因附近的选择性扫描,这可能与提高空间认知能力有关,这有助于幼虫寄生虫定位和监测宿主巢穴。最后,与非寄生外群相比,我们在宿主专业幼虫寄生虫的基因组中发现了更多的选择性扫描,这可能反映了正在进行的宿主-寄生虫共同进化军备竞赛。
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引用次数: 0
Pesticides and habitat loss additively reduce wild bees in crop fields 杀虫剂和栖息地的丧失使农田里的野蜂数量减少
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-10 DOI: 10.1038/s41559-025-02924-z
Anina Knauer, Subodh Adhikari, Georg K. S. Andersson, Emilie Andrieu, András Báldi, Péter Batáry, Jordi Bosch, Sara L. Bushmann, Domingo Cano, Romain Carrié, Bryan N. Danforth, Francis A. Drummond, Diane Esquerré, Daniel García, Claudio Gratton, Peter A. Hambäck, Anne-Kathrin Happe, Veronica Hederström, Andrea Holzschuh, Philippe Jeanneret, Riina Kaasik, Temitope Kehinde, Jessica Knapp, Anikó Kovács-Hostyánszki, Claire Kremen, Ilona Leyer, Gisela Lüscher, Rachel Mallinger, Riho Marja, Carlos Martínez-Núñez, Fabian D. Menalled, Leithen K. M’Gonigle, Marcos Miñarro, Anne-Christine Mupepele, Charlie C. Nicholson, Mark Otieno, Annie Ouin, Mia G. Park, Maria-Helena Pereira-Peixoto, Antonio J. Pérez, Simon G. Potts, Annette Reineke, Pedro J. Rey, Taylor H. Ricketts, Justine Rivers-Moore, Stuart Roberts, Laura Roquer-Beni, Maj Rundlöf, Ulrika Samnegård, Michael J. Samways, Janine M. Schwarz, Oliver Schweiger, Henrik G. Smith, Ingolf Steffan-Dewenter, Louis Sutter, Giovanni Tamburini, Deniz Uzman, Eve Veromann, Aude Vialatte, Eneli Viik, Mark J. F. Brown, Alexandra-Maria Klein, Matthias Albrecht
Pesticide use and habitat loss are major anthropogenic drivers of bee decline, raising global concerns about impaired crop pollination. However, the relative importance of these stressors and their combined impact on bee assemblages comprising species with different traits, such as body size or nesting strategy, remains unknown. Here we addressed these key knowledge gaps in a global quantitative synthesis analysing bee assemblage data from 681 crop fields across three continents. We found that both local pesticide hazards and decreasing proportions of semi-natural habitats in surrounding landscapes negatively affected wild bee abundance and species richness in crop fields, while pesticides additionally reduced functional and phylogenetic diversity. Semi-natural habitat availability did not buffer against these negative pesticide effects, nor did we identify any specific traits rending bees more vulnerable to one of the two drivers. Our findings highlight the pressing need to reduce non-target effects of pesticide use and emphasize that conservation and restoration of semi-natural habitats successfully promote wild bees, but are insufficient strategies to mitigate pesticide-driven losses of wild bee pollinators from crop fields. The authors synthesize bee assemblage data from 681 crop fields across three continents, finding that local pesticide hazards and decreasing adjacent semi-natural habitats both negatively affected wild bee abundance and species richness in crop fields, while pesticides also reduced functional diversity.
农药的使用和栖息地的丧失是蜜蜂数量减少的主要人为驱动因素,引起了全球对作物授粉受损的关注。然而,这些压力源的相对重要性及其对具有不同特征(如体型或筑巢策略)的蜜蜂组合的综合影响仍然未知。在这里,我们通过全球定量综合分析了来自三大洲681个农田的蜜蜂组合数据,解决了这些关键的知识空白。研究发现,当地农药危害和周边景观半自然生境比例的减少对农田野生蜜蜂的丰度和物种丰富度产生了负面影响,同时农药还降低了功能和系统发育多样性。半自然栖息地的可用性并没有缓冲这些负面的农药影响,我们也没有发现任何特定的特征使蜜蜂更容易受到这两个驱动因素之一的影响。我们的研究结果强调了减少农药使用的非目标效应的迫切需要,并强调了半自然栖息地的保护和恢复成功地促进了野生蜜蜂的发展,但目前还没有足够的策略来减轻农药导致的农田野生蜜蜂传粉者的损失。
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引用次数: 0
The responsible use of global remote-sensing datasets 负责任地使用全球遥感数据集。
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-10 DOI: 10.1038/s41559-025-02939-6
Matthew E. Fagan, Naomi B. Schwartz, Ruth S. DeFries
In this age of abundant remote-sensing data, global datasets are increasingly relied upon to analyse the planet at unprecedented scale and resolution. We offer three considerations on uncertainties and potential misapplications of global datasets, to ensure results appropriate for decision making.
在这个遥感数据丰富的时代,越来越多地依赖全球数据集以前所未有的规模和分辨率分析地球。我们对全球数据集的不确定性和潜在的误用提供了三个考虑,以确保结果适合决策。
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引用次数: 0
A potential turning point for Bolivia’s biodiversity conservation 玻利维亚生物多样性保护的潜在转折点。
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-09 DOI: 10.1038/s41559-025-02937-8
Mónica Moraes R, Álvaro Fernández-Llamazares, Luis F. Aguirre, Oswaldo Maillard, Alfredo Romero-Muñoz
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引用次数: 0
Sodium constraints on megaherbivore communities in Africa 钠对非洲大型食草动物群落的限制
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-09 DOI: 10.1038/s41559-025-02917-y
Andrew J. Abraham, Gareth P. Hempson, Elizabeth le Roux, Celesté Maré, Lyla L. Taylor, Andrea B. Webster, Ethan S. Duvall, Tomos Prys-Jones, John Coppock, Chase Ridenour, Pieter de Jager, David Augustine, Colin A. Chapman, Peter J. Fashing, Michael B. J. Harfoot, Ricardo M. Holdo, J. Grant C. Hopcraft, Caley Johnson, Frank van Langevelde, Yadvinder Malhi, Alexandra Morel, Nga Nguyen, Norman Owen-Smith, Arjun B. Potter, Herbert H. T. Prins, Jessica M. Rothman, Larissa Swedell, Jens-Christian Svenning, Eleanor R. Thomson, Fons van der Plas, Michiel P. Veldhuis, Robert M. Pringle, Marcus Clauss, Christopher E. Doughty
Sodium (Na) is an essential nutrient for animals, but not for most plants. Consequently, herbivores may confront a mismatch between forage availability and metabolic requirement. Recent work suggests that larger-bodied mammals may be particularly susceptible to Na deficits, yet it is unknown whether Na availability constrains the density or distribution of large herbivores at broad scales. Here we show that plant-Na availability varies >1,000-fold across sub-Saharan Africa and helps explain continent-scale patterns of large-herbivore abundance. We combined field data with machine-learning approaches to generate high-resolution maps of plant Na, which revealed multi-scale gradients arising from sea-salt deposition, hydrology, soil chemistry and plant traits. Faecal Na concentration was positively correlated with modelled dietary Na, supporting the prediction that variation in plant Na is a major determinant of herbivore Na intake. Incorporating plant-Na availability improved model predictions of large-herbivore population density, especially for megaherbivore species, which are depressed in very-low-Na regions (<100 mg kg−1), consistent with Na limitation. Our study offers an explanation for the scarcity of megaherbivores in parts of Central and West Africa, which has major ecological ramifications given the strong influence of large herbivores on ecosystem functioning and the profound human-induced changes to Na availability in Africa and beyond. Combining high-resolution mapping of foliar and herbivore faecal sodium concentrations across Africa, the authors show that plant-derived sodium availability constrains megaherbivore densities at a continental scale.
钠(Na)是动物必需的营养物质,但对大多数植物却不是。因此,草食动物可能面临饲料供应和代谢需求之间的不匹配。最近的研究表明,体型较大的哺乳动物可能特别容易受到钠缺乏的影响,但目前尚不清楚钠的可用性是否会在大范围内限制大型食草动物的密度或分布。在撒哈拉以南非洲地区,植物na的可用性变化了1000倍,这有助于解释大型食草动物丰度的大陆尺度模式。我们将野外数据与机器学习方法相结合,生成了植物Na的高分辨率地图,揭示了由海盐沉积、水文、土壤化学和植物性状引起的多尺度梯度。粪便中Na浓度与模拟的饲粮Na呈正相关,支持植物Na变化是草食性Na摄入量主要决定因素的预测。结合植物钠的有效性,改进了大型食草动物种群密度的模型预测,特别是对于大型食草动物物种,它们在极低钠区域(<100 mg kg - 1)受到抑制,符合钠的限制。我们的研究为中非和西非部分地区大型食草动物的稀缺提供了一个解释,鉴于大型食草动物对生态系统功能的强烈影响以及非洲及其他地区人类引起的Na可用性的深刻变化,这一现象具有重大的生态后果。
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引用次数: 0
A pinch of salt works for megaherbivores 一撮盐对大型食草动物有用。
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-09 DOI: 10.1038/s41559-025-02946-7
Ellen A. R. Welti
A high-resolution map of plant sodium concentrations across sub-Saharan Africa reveals that the distribution of large mammalian herbivores aligns with a diet of modest salt intake, with higher herbivore densities in habitats with intermediate concentrations of foliar sodium.
撒哈拉以南非洲地区植物钠浓度的高分辨率地图显示,大型食草哺乳动物的分布与适度盐摄入量的饮食相一致,在叶面钠浓度中等的栖息地,食草动物密度较高。
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引用次数: 0
Intracellular interactions shape antiviral resistance outcomes in poliovirus via eco-evolutionary feedback 细胞内相互作用通过生态进化反馈形成脊髓灰质炎病毒的抗病毒耐药性结果
IF 16.8 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-05 DOI: 10.1038/s41559-025-02926-x
Alexander J. Robertson, Benjamin Kerr, Alison F. Feder
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引用次数: 0
Impacts of an industrial deep-sea mining trial on macrofaunal biodiversity 深海工业采矿试验对大型动物生物多样性的影响
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-05 DOI: 10.1038/s41559-025-02911-4
Eva C. D. Stewart, Helena Wiklund, Lenka Neal, Guadalupe Bribiesca-Contreras, Regan Drennan, Corie M. B. Boolukos, Lucas D. King, Muriel Rabone, Georgina Valls Domedel, Amanda Serpell-Stevens, Maria B. Arias, Thomas G. Dahlgren, Tammy Horton, Adrian G. Glover
In 2022 a large-scale test of a commercial deep-sea mining machine was undertaken on the abyssal plain of the eastern Pacific Ocean at a depth of 4,280 m, recovering over 3,000 t of polymetallic nodules. Here, using a quantitative species-level sediment-dwelling macrofaunal dataset, we investigated spatio-temporal variation in faunal abundance and biodiversity for 2 years before and 2 months after test mining. This allowed for the separation of direct mining impacts from natural background variation, which we found to be significant over the 2-year sampling period. Macrofaunal density decreased by 37% directly within the mining tracks, alongside a 32% reduction in species richness, and significantly increased community multivariate dispersion. While species richness and diversity indices within the tracks were reduced compared with controls, diversity was not impacted when measured by sample-size independent measures of accumulation. We found no evidence for change in faunal abundance in an area affected by sediment plumes from the test mining; however, species dominance relationships were altered in these communities reducing their overall biodiversity. These results provide critical data on the effective design of abyssal baseline and impact surveys and highlight the value of integrated species-level taxonomic work in assessing the risks of biodiversity loss. A species-level dataset of sediment-dwelling macrofauna, sampled 2 years before and 2 months after a test of a commercial deep-sea mining machine, reveals losses of macrofaunal density and species richness within the machine’s tracks and community-level effects in both the tracks and an area impacted by sediment plumes.
2022年,在东太平洋深达4280米的深海平原上对商用深海采矿机进行了大规模试验,回收了3000多吨多金属结核。在此基础上,利用定量的物种水平的沉积物栖息大型动物数据集,研究了试验采矿前2年和试验采矿后2个月的动物丰度和生物多样性的时空变化。这允许从自然背景变化中分离直接采矿影响,我们发现这在2年的采样期内是显著的。矿区内大型动物密度下降了37%,物种丰富度下降了32%,群落多元分散度显著增加。虽然物种丰富度和多样性指数与对照相比有所降低,但通过独立于样本量的积累测量,多样性没有受到影响。我们没有发现任何证据表明,在受试验采矿产生的沉积物羽流影响的地区,动物丰度发生了变化;然而,这些群落的物种优势关系发生了改变,降低了其整体生物多样性。这些结果为有效设计深海基线和影响调查提供了关键数据,并突出了综合物种水平分类工作在评估生物多样性丧失风险方面的价值。
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引用次数: 0
Global dependency of canopy height on vapour pressure deficit and its projections under climate change 气候变化下全球冠层高度对水汽压亏缺的依赖及其预估
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-05 DOI: 10.1038/s41559-025-02913-2
Wenmin Zhang, Martin Brandt, Chi Xu, Xiaowei Tong, Yanbiao Xi, Zhongxiang Fang, Rasmus Fensholt
Canopy height is an important aspect of forest structure and functioning. Although water availability is important for canopy height growth, the climatic niche for tall trees remains poorly understood. Here we use global spaceborne lidar-derived canopy height to study its dependence on climate variables. We find that vapour pressure deficit (VPD) strongly controls geographical patterns of canopy height, observing a negative association also in tropical regions where water limitations are modest. Taller trees are prevalent in humid tropical regions, but canopy height decreases sharply as mean annual VPD surpasses 0.68 kPa. By 2100, projected increases in VPD under a warming climate could enhance limitations to canopy height growth, resulting in height losses in 87% of the humid tropical regions. Conversely, we project a widespread increase in canopy height across drylands, linked primarily to changing precipitation regimes. These results suggest that limitations on height growth driven by shifts in atmospheric dryness could lead to reduced future forest carbon sequestration. Rising atmospheric aridity may be an important driver of tree growth. Here the authors present analyse the global relationship between tree canopy height and vapour pressure deficit, and its potential shifts under future climate change.
冠层高度是森林结构和功能的一个重要方面。尽管水的可用性对树冠高度的增长很重要,但对高大树木的气候生态位仍然知之甚少。本文利用星载激光雷达反演的全球冠层高度,研究其对气候变量的依赖关系。我们发现水汽压亏缺(VPD)强烈地控制着冠层高度的地理格局,在水分限制适度的热带地区也观察到负相关。高乔木在热带湿润地区普遍存在,但当年平均VPD超过0.68 kPa时,冠层高度急剧下降。到2100年,在气候变暖的情况下,预估的VPD增加可能会加强对冠层高度增长的限制,导致87%的潮湿热带地区的高度损失。相反,我们预计旱地的冠层高度将普遍增加,这主要与降水制度的变化有关。这些结果表明,由大气干燥变化驱动的高度增长限制可能导致未来森林碳固存减少。不断上升的大气干旱可能是树木生长的一个重要驱动力。在此,作者分析了树冠高度与水汽压亏缺之间的全球关系,以及在未来气候变化下其潜在变化。
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引用次数: 0
Arthropod species loss underpins biomass declines 节肢动物物种的减少是生物量下降的基础。
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-02 DOI: 10.1038/s41559-025-02909-y
Benjamin Wildermuth, Maximilian Bröcher, Emma Ladouceur, Sebastian T. Meyer, Holger Schielzeth, Michael Staab, Rafael Achury, Nico Blüthgen, Lionel Hertzog, Jes Hines, Christiane Roscher, Oliver Schweiger, Wolfgang W. Weisser, Anne Ebeling
Recent declines in arthropod diversity, abundance and biomass are central to the global biodiversity crisis. Yet, we lack a mechanistic understanding of the respective contributions of species richness, species identity and abundance to overall biomass change, and how the environment filters these processes. Synthesizing 11 years of data from a biodiversity experiment and from farmed grasslands in central Europe across a gradient of plant species richness and land-use intensity, we show that local arthropod biomass declines were predominantly (>90%) linked to species richness losses. Abundance declines among persisting species accounted for only 5–8% of lost biomass. The role of species identity depended on the environment and diminished over time: especially under high plant diversity and low land-use intensity, arthropod species with both below-average total biomass and above-average individual biomass (large, rare species) contributed disproportionately to species turnover—but this was only detectable in early years when the communities were still relatively abundant. We conclude that arthropod communities are currently homogenizing towards few common species of similar biomass, probably reducing their adaptability to future environmental change. Increasing the diversity and reducing the land-use intensity of grasslands may mitigate ongoing community simplification and loss of arthropod diversity and functioning. Insects are declining in many regions. Here the authors show that arthropod biomass losses in Jena Experiment and Biodiversity Exploratories time series are driven more by species loss than by species identity and abundance declines, and are mitigated by high plant diversity and low land-use intensity.
最近节肢动物多样性、丰度和生物量的下降是全球生物多样性危机的核心。然而,我们缺乏对物种丰富度、物种身份和丰度对总体生物量变化的各自贡献的机制理解,以及环境如何过滤这些过程。研究人员综合了中欧地区11年的生物多样性实验数据以及不同植物物种丰富度和土地利用强度梯度的人工草地数据,发现当地节肢动物生物量下降主要与物种丰富度损失有关(约90%)。持续物种的丰度下降仅占损失生物量的5-8%。物种身份的作用依赖于环境,并随着时间的推移而减弱:特别是在植物多样性高和土地利用强度低的情况下,总生物量低于平均水平和个体生物量高于平均水平的节肢动物物种(大型稀有物种)对物种更替的贡献不成比例,但这仅在群落相对丰富的早期才可检测到。我们得出结论,节肢动物群落目前正在向少数相似生物量的常见物种同质化,这可能降低了它们对未来环境变化的适应能力。增加草地的生物多样性和降低草地的土地利用强度可以缓解正在进行的群落简化和节肢动物多样性和功能的丧失。
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引用次数: 0
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