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Intracellular interactions shape antiviral resistance outcomes in poliovirus via eco-evolutionary feedback 细胞内相互作用通过生态进化反馈形成脊髓灰质炎病毒的抗病毒耐药性结果
IF 16.8 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-05 DOI: 10.1038/s41559-025-02926-x
Alexander J. Robertson, Benjamin Kerr, Alison F. Feder
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引用次数: 0
Impacts of an industrial deep-sea mining trial on macrofaunal biodiversity 深海工业采矿试验对大型动物生物多样性的影响
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-05 DOI: 10.1038/s41559-025-02911-4
Eva C. D. Stewart, Helena Wiklund, Lenka Neal, Guadalupe Bribiesca-Contreras, Regan Drennan, Corie M. B. Boolukos, Lucas D. King, Muriel Rabone, Georgina Valls Domedel, Amanda Serpell-Stevens, Maria B. Arias, Thomas G. Dahlgren, Tammy Horton, Adrian G. Glover
In 2022 a large-scale test of a commercial deep-sea mining machine was undertaken on the abyssal plain of the eastern Pacific Ocean at a depth of 4,280 m, recovering over 3,000 t of polymetallic nodules. Here, using a quantitative species-level sediment-dwelling macrofaunal dataset, we investigated spatio-temporal variation in faunal abundance and biodiversity for 2 years before and 2 months after test mining. This allowed for the separation of direct mining impacts from natural background variation, which we found to be significant over the 2-year sampling period. Macrofaunal density decreased by 37% directly within the mining tracks, alongside a 32% reduction in species richness, and significantly increased community multivariate dispersion. While species richness and diversity indices within the tracks were reduced compared with controls, diversity was not impacted when measured by sample-size independent measures of accumulation. We found no evidence for change in faunal abundance in an area affected by sediment plumes from the test mining; however, species dominance relationships were altered in these communities reducing their overall biodiversity. These results provide critical data on the effective design of abyssal baseline and impact surveys and highlight the value of integrated species-level taxonomic work in assessing the risks of biodiversity loss. A species-level dataset of sediment-dwelling macrofauna, sampled 2 years before and 2 months after a test of a commercial deep-sea mining machine, reveals losses of macrofaunal density and species richness within the machine’s tracks and community-level effects in both the tracks and an area impacted by sediment plumes.
2022年,在东太平洋深达4280米的深海平原上对商用深海采矿机进行了大规模试验,回收了3000多吨多金属结核。在此基础上,利用定量的物种水平的沉积物栖息大型动物数据集,研究了试验采矿前2年和试验采矿后2个月的动物丰度和生物多样性的时空变化。这允许从自然背景变化中分离直接采矿影响,我们发现这在2年的采样期内是显著的。矿区内大型动物密度下降了37%,物种丰富度下降了32%,群落多元分散度显著增加。虽然物种丰富度和多样性指数与对照相比有所降低,但通过独立于样本量的积累测量,多样性没有受到影响。我们没有发现任何证据表明,在受试验采矿产生的沉积物羽流影响的地区,动物丰度发生了变化;然而,这些群落的物种优势关系发生了改变,降低了其整体生物多样性。这些结果为有效设计深海基线和影响调查提供了关键数据,并突出了综合物种水平分类工作在评估生物多样性丧失风险方面的价值。
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引用次数: 0
Global dependency of canopy height on vapour pressure deficit and its projections under climate change 气候变化下全球冠层高度对水汽压亏缺的依赖及其预估
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-05 DOI: 10.1038/s41559-025-02913-2
Wenmin Zhang, Martin Brandt, Chi Xu, Xiaowei Tong, Yanbiao Xi, Zhongxiang Fang, Rasmus Fensholt
Canopy height is an important aspect of forest structure and functioning. Although water availability is important for canopy height growth, the climatic niche for tall trees remains poorly understood. Here we use global spaceborne lidar-derived canopy height to study its dependence on climate variables. We find that vapour pressure deficit (VPD) strongly controls geographical patterns of canopy height, observing a negative association also in tropical regions where water limitations are modest. Taller trees are prevalent in humid tropical regions, but canopy height decreases sharply as mean annual VPD surpasses 0.68 kPa. By 2100, projected increases in VPD under a warming climate could enhance limitations to canopy height growth, resulting in height losses in 87% of the humid tropical regions. Conversely, we project a widespread increase in canopy height across drylands, linked primarily to changing precipitation regimes. These results suggest that limitations on height growth driven by shifts in atmospheric dryness could lead to reduced future forest carbon sequestration. Rising atmospheric aridity may be an important driver of tree growth. Here the authors present analyse the global relationship between tree canopy height and vapour pressure deficit, and its potential shifts under future climate change.
冠层高度是森林结构和功能的一个重要方面。尽管水的可用性对树冠高度的增长很重要,但对高大树木的气候生态位仍然知之甚少。本文利用星载激光雷达反演的全球冠层高度,研究其对气候变量的依赖关系。我们发现水汽压亏缺(VPD)强烈地控制着冠层高度的地理格局,在水分限制适度的热带地区也观察到负相关。高乔木在热带湿润地区普遍存在,但当年平均VPD超过0.68 kPa时,冠层高度急剧下降。到2100年,在气候变暖的情况下,预估的VPD增加可能会加强对冠层高度增长的限制,导致87%的潮湿热带地区的高度损失。相反,我们预计旱地的冠层高度将普遍增加,这主要与降水制度的变化有关。这些结果表明,由大气干燥变化驱动的高度增长限制可能导致未来森林碳固存减少。不断上升的大气干旱可能是树木生长的一个重要驱动力。在此,作者分析了树冠高度与水汽压亏缺之间的全球关系,以及在未来气候变化下其潜在变化。
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引用次数: 0
Arthropod species loss underpins biomass declines 节肢动物物种的减少是生物量下降的基础。
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-02 DOI: 10.1038/s41559-025-02909-y
Benjamin Wildermuth, Maximilian Bröcher, Emma Ladouceur, Sebastian T. Meyer, Holger Schielzeth, Michael Staab, Rafael Achury, Nico Blüthgen, Lionel Hertzog, Jes Hines, Christiane Roscher, Oliver Schweiger, Wolfgang W. Weisser, Anne Ebeling
Recent declines in arthropod diversity, abundance and biomass are central to the global biodiversity crisis. Yet, we lack a mechanistic understanding of the respective contributions of species richness, species identity and abundance to overall biomass change, and how the environment filters these processes. Synthesizing 11 years of data from a biodiversity experiment and from farmed grasslands in central Europe across a gradient of plant species richness and land-use intensity, we show that local arthropod biomass declines were predominantly (>90%) linked to species richness losses. Abundance declines among persisting species accounted for only 5–8% of lost biomass. The role of species identity depended on the environment and diminished over time: especially under high plant diversity and low land-use intensity, arthropod species with both below-average total biomass and above-average individual biomass (large, rare species) contributed disproportionately to species turnover—but this was only detectable in early years when the communities were still relatively abundant. We conclude that arthropod communities are currently homogenizing towards few common species of similar biomass, probably reducing their adaptability to future environmental change. Increasing the diversity and reducing the land-use intensity of grasslands may mitigate ongoing community simplification and loss of arthropod diversity and functioning. Insects are declining in many regions. Here the authors show that arthropod biomass losses in Jena Experiment and Biodiversity Exploratories time series are driven more by species loss than by species identity and abundance declines, and are mitigated by high plant diversity and low land-use intensity.
最近节肢动物多样性、丰度和生物量的下降是全球生物多样性危机的核心。然而,我们缺乏对物种丰富度、物种身份和丰度对总体生物量变化的各自贡献的机制理解,以及环境如何过滤这些过程。研究人员综合了中欧地区11年的生物多样性实验数据以及不同植物物种丰富度和土地利用强度梯度的人工草地数据,发现当地节肢动物生物量下降主要与物种丰富度损失有关(约90%)。持续物种的丰度下降仅占损失生物量的5-8%。物种身份的作用依赖于环境,并随着时间的推移而减弱:特别是在植物多样性高和土地利用强度低的情况下,总生物量低于平均水平和个体生物量高于平均水平的节肢动物物种(大型稀有物种)对物种更替的贡献不成比例,但这仅在群落相对丰富的早期才可检测到。我们得出结论,节肢动物群落目前正在向少数相似生物量的常见物种同质化,这可能降低了它们对未来环境变化的适应能力。增加草地的生物多样性和降低草地的土地利用强度可以缓解正在进行的群落简化和节肢动物多样性和功能的丧失。
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引用次数: 0
Spatial patterns and future potential of tree species richness and structural diversity in China’s forests 中国森林树种丰富度和结构多样性的空间格局及未来潜力
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-02 DOI: 10.1038/s41559-025-02922-1
Changjin Cheng, Guoyi Zhou, Xuli Tang, Shaopeng Wang, Yanjun Su, Jin Wu, Xiangtao Xu, Wenfang Xu, Fangmei Lin, Yongshi Zhou, Genxu Wang, Junhua Yan, Keping Ma, Sheng Du, Shenggong Li, Shijie Han, Youxin Ma, Juxiu Liu, Donghai Wu
Two fundamental aspects that characterize the diversity of natural forests are species richness and structural diversity. Our understanding of the fine-grained patterns and drivers of tree species richness and structural diversity in many regions has been limited by lack of spatially representative vegetation-plot data. Here we use data on 314,613 trees from 3,396 plots to elucidate spatial patterns, determinants and future potential of tree species richness and structural diversity in natural forests across China. We find that the patterns and their dominant drivers differed between tree species richness and structural diversity. Precipitation seasonality is the foremost predictor of species richness, whereas forest age is the leading predictor of structural diversity. Projections based on future climate scenarios SSP126 and SSP245 highlight the potential for substantial increases in fine-grained species richness (~36%) and structural diversity (~27%) by 2100. While this increase in diversity could enhance carbon sequestration, it may also pose threats to endangered species due to intensified competition for limited ecological niches. Multiple diversity facets contribute to forest ecosystem functioning. Here the authors investigate spatial patterns and predictors of forest tree species richness and structural diversity across China and project potential trends under future climate scenarios.
天然林多样性的两个基本特征是物种丰富度和结构多样性。由于缺乏具有空间代表性的植被样地数据,我们对许多地区树种丰富度和结构多样性的细粒度格局和驱动因素的理解受到限制。本文利用3396个样地的314613棵树的数据,分析了中国天然林树种丰富度和结构多样性的空间格局、决定因素和未来潜力。研究发现,树种丰富度和结构多样性之间的格局及其主导驱动因素存在差异。降水季节性是物种丰富度的主要预测因子,而林龄是结构多样性的主要预测因子。基于未来气候情景SSP126和SSP245的预测强调,到2100年,细粒物种丰富度(~36%)和结构多样性(~27%)可能大幅增加。虽然这种多样性的增加可以加强碳固存,但由于对有限生态位的激烈竞争,它也可能对濒危物种构成威胁。
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引用次数: 0
Core rumen microbes are functional generalists that sustain host metabolism and gut ecosystem function 核心瘤胃微生物是维持宿主代谢和肠道生态系统功能的功能多面手
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-01 DOI: 10.1038/s41559-025-02904-3
Omar E. Tovar-Herrera, Ido Grinshpan, Gil Sorek, Ido Lybovits, Liron Levin, Sarah Moraïs, Itzhak Mizrahi
Some microbes persist across diverse gut microbiomes, raising the question of what features define these core taxa and allow them to persist across hosts. Using the rumen microbiome as a model system, we show that core microbes exhibit distinct attributes of ecological generalists, including greater strain variability and broader functional capacity, linked to larger genome sizes. By analysing ~3,000 genomes of core and non-core microbes and metabolically measuring their functional attributes with both biochemical assays and untargeted/targeted metabolomics, we find that these traits enable core microbes to be metabolically independent while also supporting non-core microbes and the host. Core taxa produce essential metabolites, such as amino acids and vitamins, and encode fibre-degrading enzymes crucial for host nutrition. Additionally, they engage in cross-feeding, providing non-core microbes with vital nutrients. This independence positions core microbes as foundational pillars of gut ecosystem stability, and influencing these microbes could modulate microbiome functionality and ruminant host metabolism, with possible downstream consequences for food security and environmental sustainability. This study uses the rumen gut microbiome to show that core microbes exhibit attributes of ecological generalists with broad functional capacity and traits that enable them to be metabolically independent while also supporting non-core microbes and the host.
一些微生物在不同的肠道微生物群中持续存在,这就提出了一个问题:是什么特征定义了这些核心分类群,并允许它们在宿主中持续存在。使用瘤胃微生物组作为模型系统,我们发现核心微生物表现出生态通才的独特属性,包括更大的菌株可变性和更广泛的功能能力,与更大的基因组大小有关。通过分析核心和非核心微生物的约3000个基因组,并通过生化分析和非靶向/靶向代谢组学对其功能属性进行代谢测量,我们发现这些特征使核心微生物在代谢独立的同时也支持非核心微生物和宿主。核心类群产生必需的代谢物,如氨基酸和维生素,并编码对宿主营养至关重要的纤维降解酶。此外,它们参与交叉喂养,为非核心微生物提供重要的营养物质。这种独立性使核心微生物成为肠道生态系统稳定的基础支柱,影响这些微生物可以调节微生物组功能和反刍动物宿主代谢,可能对粮食安全和环境可持续性产生下游影响。本研究利用瘤胃肠道微生物组表明,核心微生物表现出具有广泛功能能力和特性的生态通才属性,使它们能够在代谢独立的同时支持非核心微生物和宿主。
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引用次数: 0
Pleiotropic mutational effects on function and stability constrain the antigenic evolution of influenza haemagglutinin 对流感血凝素功能和稳定性的多效突变影响制约了其抗原性进化
IF 16.8 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-01 DOI: 10.1038/s41559-025-02895-1
Timothy C. Yu, Caroline Kikawa, Bernadeta Dadonaite, Andrea N. Loes, Janet A. Englund, Jesse D. Bloom
The evolution of human influenza virus haemagglutinin (HA) involves simultaneous selection to acquire antigenic mutations that escape population immunity while preserving protein function and stability. Epistasis shapes this evolution, as an antigenic mutation that is deleterious in one genetic background may become tolerated in another. However, the extent to which epistasis can alleviate pleiotropic conflicts between immune escape and protein function/stability is unclear. Here we measure how all amino acid mutations in the HA of a recent human H3N2 influenza strain affect its cell entry function, acid stability and neutralization by human serum antibodies. We find that epistasis has entrenched certain mutations so that reverting to the ancestral amino acid identity in earlier strains is no longer tolerated. Epistasis has also enabled the emergence of antigenic mutations that were detrimental to the cell entry function of HA in earlier strains. However, epistasis appears insufficient to overcome the pleiotropic costs of antigenic mutations that impair the stability of HA, explaining why some mutations that strongly escape human antibodies never fix in nature. Our results refine our understanding of the mutational constraints that shape recent H3N2 influenza evolution: epistasis can enable antigenic change, but pleiotropic effects can restrict its trajectory.
人类流感病毒血凝素(HA)的进化涉及同时选择获得抗原突变,以逃避群体免疫,同时保持蛋白质功能和稳定性。上位性塑造了这种进化,因为在一种遗传背景中有害的抗原突变可能在另一种遗传背景中被容忍。然而,上位在多大程度上可以缓解免疫逃逸和蛋白质功能/稳定性之间的多效性冲突尚不清楚。在这里,我们测量了最近人类H3N2流感毒株的血凝素中所有氨基酸突变如何影响其细胞进入功能、酸稳定性和被人血清抗体中和。我们发现上位性已经确立了某些突变,因此在早期菌株中恢复到祖先的氨基酸身份不再被容忍。上位性也使抗原突变的出现对早期HA的细胞进入功能有害。然而,显存似乎不足以克服抗原突变的多效性成本,这些突变会损害血凝素的稳定性,这就解释了为什么一些强烈逃避人类抗体的突变在自然界中永远不会固定。我们的研究结果完善了我们对形成最近H3N2流感进化的突变约束的理解:上位性可以使抗原改变,但多效性效应可以限制其轨迹。
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引用次数: 0
Learning a viral protein’s vocabulary
IF 16.8 1区 生物学 Q1 ECOLOGY Pub Date : 2025-12-01 DOI: 10.1038/s41559-025-02928-9
Seth J. Zost
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引用次数: 0
Protection of coral reef fish delivers ecosystem-critical biocontrol of coral-eating starfish across the Great Barrier Reef 对珊瑚礁鱼类的保护对整个大堡礁的吃珊瑚海星提供了对生态系统至关重要的生物控制
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-11-28 DOI: 10.1038/s41559-025-02916-z
Scott A. Condie, Diego R. Barneche, Leanne M. Currey-Randall, Frederieke J. Kroon, Javier Porobic, Daniela M. Ceccarelli
While biological control (or biocontrol) is an established method for managing pest species in terrestrial systems, few successful applications have been reported for marine environments. Crown-of-thorns starfish (CoTS, Acanthaster ssp.) are regarded as a pest species across the Indo-Pacific, where they are voracious predators of corals and represent one of the largest causes of coral mortality on the Great Barrier Reef (GBR). The role of reef fish in moderating outbreaks of CoTS through biocontrol has recently become more widely recognized. Here we have incorporated reef fish into a meta-community model of the GBR to demonstrate the critical role that marine reserves and other fisheries regulations have had in limiting the prevalence of CoTS outbreaks and maintaining the resilience of the GBR ecosystem. Our results suggest that without these interventions, the GBR would have already passed a major tipping point to a new state characterized by few predatory fish, continuous CoTS outbreaks and substantially lower coral cover. Model projections to 2050 demonstrate the importance of maintaining protection into the future and suggest that additional gains can be made over the next decade by continuing to manually control CoTS numbers. However, beyond 2040, the escalating impacts of climate change and the underlying resilience of CoTS populations will limit the effectiveness of interventions based on biocontrol. Incorporating reef fish into a meta-community model of the Great Barrier Reef suggests that fish-protecting interventions, including marine protected areas, have prevented the reef from already passing a tipping-point transition to a state of continual outbreaks of crown-of-thorns starfish and reduced coral cover.
虽然生物防治(或生物防治)是陆地系统中管理害虫物种的既定方法,但很少有成功应用于海洋环境的报道。棘冠海星(CoTS, Acanthaster ssp.)被认为是整个印度太平洋地区的有害物种,它们是珊瑚的贪婪掠食者,是大堡礁(GBR)珊瑚死亡的最大原因之一。珊瑚鱼通过生物防治在缓和CoTS爆发中的作用最近得到了更广泛的认识。在这里,我们将珊瑚鱼纳入GBR的元群落模型,以证明海洋保护区和其他渔业法规在限制CoTS爆发的流行和维持GBR生态系统的复原力方面发挥的关键作用。我们的研究结果表明,如果没有这些干预措施,GBR可能已经越过了一个主要的临界点,进入一个新的状态,其特征是掠食性鱼类很少,CoTS持续爆发,珊瑚覆盖率大幅下降。到2050年的模式预测显示了在未来保持保护的重要性,并表明通过继续手动控制CoTS数量可以在未来十年取得额外的收益。然而,在2040年以后,气候变化的影响不断升级,以及CoTS种群潜在的复原力将限制基于生物防治的干预措施的有效性。
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引用次数: 0
Behavioural ecology in the twenty-first century 二十一世纪的行为生态学
IF 13.9 1区 生物学 Q1 ECOLOGY Pub Date : 2025-11-25 DOI: 10.1038/s41559-025-02912-3
Stuart A. West, Sasha R. X. Dall, J. Paul Cunningham, Suzanne H. Alonzo, Ashleigh S. Griffin
Behavioural ecology research has explained traits from foraging and cooperation to mating strategies and sex allocation. However, the size and interdisciplinary nature of this research can obscure the broader contributions that behavioural ecology has made and the major tasks for the future. We first assess the contributions of behavioural ecology to fundamental science, for both understanding nature and the scientific method. Second, we explore the application of behavioural ecology research to global challenges, from pests and pathogens to conservation and mitigating human impact. In all cases, progress has relied on a hypothesis-driven approach that combines mathematical modelling with empirical testing and the strategic choice of simplifying assumptions. This Perspective discusses how the field of behavioural ecology has contributed to fundamental science and tackling global challenges, ranging from understanding how natural selection leads to adaptation to optimizing the biocontrol of pest species.
行为生态学研究解释了从觅食和合作到交配策略和性别分配的特征。然而,这项研究的规模和跨学科性质可能会模糊行为生态学所做的更广泛的贡献和未来的主要任务。我们首先评估行为生态学对基础科学的贡献,包括理解自然和科学方法。其次,我们探讨了行为生态学研究在全球挑战中的应用,从害虫和病原体到保护和减轻人类影响。在所有情况下,进展都依赖于假设驱动的方法,这种方法将数学建模与经验检验和简化假设的战略选择相结合。本展望讨论了行为生态学领域如何为基础科学和解决全球挑战做出贡献,从了解自然选择如何导致适应到优化害虫物种的生物防治。
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引用次数: 0
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