Pub Date : 2024-06-06eCollection Date: 2024-07-01DOI: 10.1093/nsr/nwae192
Zhi Wang, Yuchen Wang, Chengkai Zhang, Yan-Jie Zhu, Ke-Peng Song, Christine M Aikens, Chen-Ho Tung, Di Sun
Despite the discovery of a series of fullerenes and a handful of noncarbon clusters with the typical topology of Ih-C60, the smallest fullerene with a large degree of curvature, C20, and its other-element counterparts are difficult to isolate experimentally. In coinage metal nanoclusters (NCs), the first all-gold fullerene, Au32, was discovered after a long-lasting pursuit, but the isolation of similar silvery fullerene structures is still challenging. Herein, we report a flying saucer-shaped 102-nuclei silver NC (Ag102) with a silvery fullerene kernel of Ag32, which is embraced by a robust cyclic anionic passivation layer of (KPO4)10. This Ag32 kernel can be viewed as a non-centered icosahedron Ag12 encaged into a dodecahedron Ag20, forming the silvery fullerene of Ag12@Ag20. The anionic layer (KPO4)10 is located at the interlayer between the Ag32 kernel and Ag70 shell, passivating the Ag32 silvery fullerene and templating the Ag70 shell. The t BuPhS- and CF3COO- ligands on the silver shell show a regioselective arrangement with the 60 t BuPhS- ligands as expanders covering the upper and lower of the flying saucer and 10 CF3COO- as terminators neatly encircling the edges of the structure. In addition, Ag102 shows excellent photothermal conversion efficiency (η) from the visible to near-infrared region (η = 67.1% ± 0.9% at 450 nm, 60.9% ± 0.9% at 660 nm and 50.2% ± 0.5% at 808 nm), rendering it a promising material for photothermal converters and potential application in remote laser ignition. This work not only captures silver kernels with the topology of the smallest fullerene C20, but also provides a pathway for incorporating alkali metal (M) into coinage metal NCs via M-oxoanions.
{"title":"Silvery fullerene in Ag<sub>102</sub> nanosaucer.","authors":"Zhi Wang, Yuchen Wang, Chengkai Zhang, Yan-Jie Zhu, Ke-Peng Song, Christine M Aikens, Chen-Ho Tung, Di Sun","doi":"10.1093/nsr/nwae192","DOIUrl":"10.1093/nsr/nwae192","url":null,"abstract":"<p><p>Despite the discovery of a series of fullerenes and a handful of noncarbon clusters with the typical topology of <i>I</i> <sub>h</sub>-C<sub>60</sub>, the smallest fullerene with a large degree of curvature, C<sub>20</sub>, and its other-element counterparts are difficult to isolate experimentally. In coinage metal nanoclusters (NCs), the first all-gold fullerene, Au<sub>32</sub>, was discovered after a long-lasting pursuit, but the isolation of similar silvery fullerene structures is still challenging. Herein, we report a flying saucer-shaped 102-nuclei silver NC (<b>Ag102</b>) with a silvery fullerene kernel of Ag<sub>32</sub>, which is embraced by a robust cyclic anionic passivation layer of (KPO<sub>4</sub>)<sub>10</sub>. This Ag<sub>32</sub> kernel can be viewed as a non-centered icosahedron Ag<sub>12</sub> encaged into a dodecahedron Ag<sub>20</sub>, forming the silvery fullerene of Ag<sub>12</sub>@Ag<sub>20</sub>. The anionic layer (KPO<sub>4</sub>)<sub>10</sub> is located at the interlayer between the Ag<sub>32</sub> kernel and Ag<sub>70</sub> shell, passivating the Ag<sub>32</sub> silvery fullerene and templating the Ag<sub>70</sub> shell. The <i><sup>t</sup></i> BuPhS<sup>-</sup> and CF<sub>3</sub>COO<sup>-</sup> ligands on the silver shell show a regioselective arrangement with the 60 <i><sup>t</sup></i> BuPhS<sup>-</sup> ligands as expanders covering the upper and lower of the flying saucer and 10 CF<sub>3</sub>COO<sup>-</sup> as terminators neatly encircling the edges of the structure. In addition, <b>Ag102</b> shows excellent photothermal conversion efficiency (<i>η</i>) from the visible to near-infrared region (<i>η</i> = 67.1% ± 0.9% at 450 nm, 60.9% ± 0.9% at 660 nm and 50.2% ± 0.5% at 808 nm), rendering it a promising material for photothermal converters and potential application in remote laser ignition. This work not only captures silver kernels with the topology of the smallest fullerene C<sub>20</sub>, but also provides a pathway for incorporating alkali metal (M) into coinage metal NCs via M-oxoanions.</p>","PeriodicalId":18842,"journal":{"name":"National Science Review","volume":"11 7","pages":"nwae192"},"PeriodicalIF":16.3,"publicationDate":"2024-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11282957/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141788691","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ultrasensitive protein identification is of paramount importance in basic research and clinical diagnostics but remains extremely challenging. A key bottleneck in preventing single-molecule protein sequencing is that, unlike the revolutionary nucleic acid sequencing methods that rely on the polymerase chain reaction (PCR) to amplify DNA and RNA molecules, protein molecules cannot be directly amplified. Decoding the proteins via amplification of certain fingerprints rather than the intact protein sequence thus represents an appealing alternative choice to address this formidable challenge. Herein, we report a proof-of-concept method that relies on residue-resolved DNA barcoding and composition code counting for amplifiable protein fingerprinting (AmproCode). In AmproCode, selective types of residues on peptides or proteins are chemically labeled with a DNA barcode, which can be amplified and quantified via quantitative PCR. The operation generates a relative ratio as the residue-resolved 'composition code' for each target protein that can be utilized as the fingerprint to determine its identity from the proteome database. We developed a database searching algorithm and applied it to assess the coverage of the whole proteome and secretome via computational simulations, proving the theoretical feasibility of AmproCode. We then designed the residue-specific DNA barcoding and amplification workflow, and identified different synthetic model peptides found in the secretome at as low as the fmol/L level for demonstration. These results build the foundation for an unprecedented amplifiable protein fingerprinting method. We believe that, in the future, AmproCode could ultimately realize single-molecule amplifiable identification of trace complex samples without further purification, and it may open a new avenue in the development of next-generation protein sequencing techniques.
超灵敏蛋白质鉴定在基础研究和临床诊断中至关重要,但仍然极具挑战性。阻碍单分子蛋白质测序的一个关键瓶颈是,与依赖聚合酶链反应(PCR)扩增 DNA 和 RNA 分子的革命性核酸测序方法不同,蛋白质分子无法直接扩增。因此,通过扩增某些指纹而不是完整的蛋白质序列来解码蛋白质是解决这一艰巨挑战的另一种有吸引力的选择。在此,我们报告了一种概念验证方法,该方法依赖于残留解析 DNA 条形码和组成代码计数,用于可扩增蛋白质指纹(AmproCode)。在 AmproCode 中,肽或蛋白质上的选择性残基类型被化学标记为 DNA 条形码,可通过定量 PCR 进行扩增和量化。该操作会生成一个相对比率,作为每个目标蛋白质的残基解析 "组成代码",该代码可用作指纹,从蛋白质组数据库中确定其身份。我们开发了一种数据库搜索算法,并应用该算法通过计算模拟评估了整个蛋白质组和分泌组的覆盖范围,证明了 AmproCode 在理论上的可行性。然后,我们设计了残基特异性 DNA 条形码和扩增工作流程,并鉴定了分泌组中低至 fmol/L 水平的不同合成模型肽,以进行演示。这些成果为前所未有的可扩增蛋白质指纹识别方法奠定了基础。我们相信,在未来,AmproCode 最终可以实现对痕量复杂样本的单分子可扩增鉴定,而无需进一步纯化,它可能会为下一代蛋白质测序技术的发展开辟一条新途径。
{"title":"Amplifiable protein identification via residue-resolved barcoding and composition code counting.","authors":"Weiming Guo, Yuan Liu, Yu Han, Huan Tang, Xinyuan Fan, Chu Wang, Peng R Chen","doi":"10.1093/nsr/nwae183","DOIUrl":"10.1093/nsr/nwae183","url":null,"abstract":"<p><p>Ultrasensitive protein identification is of paramount importance in basic research and clinical diagnostics but remains extremely challenging. A key bottleneck in preventing single-molecule protein sequencing is that, unlike the revolutionary nucleic acid sequencing methods that rely on the polymerase chain reaction (PCR) to amplify DNA and RNA molecules, protein molecules cannot be directly amplified. Decoding the proteins via amplification of certain fingerprints rather than the intact protein sequence thus represents an appealing alternative choice to address this formidable challenge. Herein, we report a proof-of-concept method that relies on residue-resolved DNA barcoding and composition code counting for amplifiable protein fingerprinting (AmproCode). In AmproCode, selective types of residues on peptides or proteins are chemically labeled with a DNA barcode, which can be amplified and quantified via quantitative PCR. The operation generates a relative ratio as the residue-resolved 'composition code' for each target protein that can be utilized as the fingerprint to determine its identity from the proteome database. We developed a database searching algorithm and applied it to assess the coverage of the whole proteome and secretome via computational simulations, proving the theoretical feasibility of AmproCode. We then designed the residue-specific DNA barcoding and amplification workflow, and identified different synthetic model peptides found in the secretome at as low as the fmol/L level for demonstration. These results build the foundation for an unprecedented amplifiable protein fingerprinting method. We believe that, in the future, AmproCode could ultimately realize single-molecule amplifiable identification of trace complex samples without further purification, and it may open a new avenue in the development of next-generation protein sequencing techniques.</p>","PeriodicalId":18842,"journal":{"name":"National Science Review","volume":"11 7","pages":"nwae183"},"PeriodicalIF":16.3,"publicationDate":"2024-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11272068/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141759833","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-27eCollection Date: 2024-07-01DOI: 10.1093/nsr/nwae184
Eric O Potma
{"title":"Sensing nanoscale electromagnetic forces when the heat is on.","authors":"Eric O Potma","doi":"10.1093/nsr/nwae184","DOIUrl":"10.1093/nsr/nwae184","url":null,"abstract":"","PeriodicalId":18842,"journal":{"name":"National Science Review","volume":"11 7","pages":"nwae184"},"PeriodicalIF":16.3,"publicationDate":"2024-05-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11229425/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141560905","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-20eCollection Date: 2024-06-01DOI: 10.1093/nsr/nwae156
Guangxiang Si, Yue Du, Peng Tang, Gao Ma, Zhaochen Jia, Xiaoyue Zhou, Dan Mu, Yan Shen, Yi Lu, Yu Mao, Chuan Chen, Yan Li, Ning Gu
[This corrects the article DOI: 10.1093/nsr/nwae057.].
[此处更正了文章 DOI:10.1093/nsr/nwae057]。
{"title":"Correction to: Unveiling the next generation of MRI contrast agents: current insights and perspectives on ferumoxytol-enhanced MRI.","authors":"Guangxiang Si, Yue Du, Peng Tang, Gao Ma, Zhaochen Jia, Xiaoyue Zhou, Dan Mu, Yan Shen, Yi Lu, Yu Mao, Chuan Chen, Yan Li, Ning Gu","doi":"10.1093/nsr/nwae156","DOIUrl":"https://doi.org/10.1093/nsr/nwae156","url":null,"abstract":"<p><p>[This corrects the article DOI: 10.1093/nsr/nwae057.].</p>","PeriodicalId":18842,"journal":{"name":"National Science Review","volume":"11 6","pages":"nwae156"},"PeriodicalIF":20.6,"publicationDate":"2024-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177880/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141331461","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-10eCollection Date: 2024-04-01DOI: 10.1093/nsr/nwae154
Mu-Ming Poo
{"title":"China's new ethical guidelines for the use of brain-computer interfaces.","authors":"Mu-Ming Poo","doi":"10.1093/nsr/nwae154","DOIUrl":"https://doi.org/10.1093/nsr/nwae154","url":null,"abstract":"","PeriodicalId":18842,"journal":{"name":"National Science Review","volume":"11 4","pages":"nwae154"},"PeriodicalIF":20.6,"publicationDate":"2024-05-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11085839/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140912464","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-29eCollection Date: 2024-06-01DOI: 10.1093/nsr/nwae151
Hejiu Hui, Ziyan Han, Kang Shuai
{"title":"Origin of water in the Moon.","authors":"Hejiu Hui, Ziyan Han, Kang Shuai","doi":"10.1093/nsr/nwae151","DOIUrl":"10.1093/nsr/nwae151","url":null,"abstract":"","PeriodicalId":18842,"journal":{"name":"National Science Review","volume":"11 6","pages":"nwae151"},"PeriodicalIF":16.3,"publicationDate":"2024-04-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11226723/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141555194","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-03eCollection Date: 2024-03-01DOI: 10.1093/nsr/nwae071
Roger Castells-Graells, Todd O Yeates
{"title":"Making topological protein links using enzymatic reactions.","authors":"Roger Castells-Graells, Todd O Yeates","doi":"10.1093/nsr/nwae071","DOIUrl":"https://doi.org/10.1093/nsr/nwae071","url":null,"abstract":"","PeriodicalId":18842,"journal":{"name":"National Science Review","volume":"11 3","pages":"nwae071"},"PeriodicalIF":20.6,"publicationDate":"2024-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10990160/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140858998","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}