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Integrative proteogenomic profiling of high-risk prostate cancer samples from Chinese patients indicates metabolic vulnerabilities and diagnostic biomarkers 对中国高危前列腺癌样本的综合蛋白质基因组分析表明了代谢脆弱性和诊断生物标志物。
IF 23.5 1区 医学 Q1 ONCOLOGY Pub Date : 2024-09-06 DOI: 10.1038/s43018-024-00820-2
Baijun Dong, Jun-Yu Xu, Yuqi Huang, Jiacheng Guo, Qun Dong, Yanqing Wang, Ni Li, Qiuli Liu, Mingya Zhang, Qiang Pan, Hanling Wang, Jun Jiang, Bairun Chen, Danqing Shen, Yiming Ma, Linhui Zhai, Jian Zhang, Jing Li, Wei Xue, Minjia Tan, Jun Qin
Prostate cancer (PCa) exhibits significant geoethnic disparities as reflected by distinct variations in the cancer genome and disease progression. Here, we perform a comprehensive proteogenomic characterization of localized high-risk PCa utilizing paired tumors and nearby tissues from 125 Chinese male patients, with the primary objectives of identifying potential biomarkers, unraveling critical oncogenic events and delineating molecular subtypes with poor prognosis. Our integrated analysis highlights the utility of GOLM1 as a noninvasive serum biomarker. Phosphoproteomics analysis reveals the crucial role of Ser331 phosphorylation on FOXA1 in regulating FOXA1-AR-dependent cistrome. Notably, our proteomic profiling identifies three distinct subtypes, with metabolic immune-desert tumors (S-III) emerging as a particularly aggressive subtype linked to poor prognosis and BCAT2 catabolism-driven PCa progression. In summary, our study provides a comprehensive resource detailing the unique proteomic and phosphoproteomic characteristics of PCa molecular pathogenesis and offering valuable insights for the development of diagnostic and therapeutic strategies. Dong et al. present an integrative proteogenomic analysis of high-risk prostate cancer samples from a cohort of Chinese patients and highlight potential therapeutic vulnerabilities and diagnostic markers.
前列腺癌(PCa)表现出明显的地缘种族差异,这反映在癌症基因组和疾病进展的不同变化上。在这里,我们利用来自 125 名中国男性患者的配对肿瘤和邻近组织,对局部高危 PCa 进行了全面的蛋白质基因组学鉴定,主要目的是确定潜在的生物标志物、揭示关键的致癌事件以及划分预后不良的分子亚型。我们的综合分析凸显了 GOLM1 作为非侵入性血清生物标记物的实用性。磷酸化蛋白质组学分析揭示了 FOXA1 上 Ser331 磷酸化在调控 FOXA1-AR 依赖性细胞色素中的关键作用。值得注意的是,我们的蛋白质组学分析确定了三种不同的亚型,其中代谢免疫凋亡肿瘤(S-III)是一种侵袭性特别强的亚型,与预后不良和 BCAT2 分解代谢驱动的 PCa 进展有关。总之,我们的研究提供了一个全面的资源,详细说明了 PCa 分子发病机制的独特蛋白质组和磷酸化蛋白质组特征,为诊断和治疗策略的开发提供了宝贵的见解。
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引用次数: 0
A protein expression atlas on tissue samples and cell lines from cancer patients provides insights into tumor heterogeneity and dependencies 癌症患者组织样本和细胞系的蛋白质表达图谱有助于深入了解肿瘤的异质性和依赖性。
IF 23.5 1区 医学 Q1 ONCOLOGY Pub Date : 2024-09-03 DOI: 10.1038/s43018-024-00817-x
Jun Li, Wei Liu, Kamalika Mojumdar, Hong Kim, Zhicheng Zhou, Zhenlin Ju, Shwetha V. Kumar, Patrick Kwok-Shing Ng, Han Chen, Michael A. Davies, Yiling Lu, Rehan Akbani, Gordon B. Mills, Han Liang
The Cancer Genome Atlas (TCGA) and the Cancer Cell Line Encyclopedia (CCLE) are foundational resources in cancer research, providing extensive molecular and phenotypic data. However, large-scale proteomic data across various cancer types for these cohorts remain limited. Here, we expand upon our previous work to generate high-quality protein expression data for approximately 8,000 TCGA patient samples and around 900 CCLE cell line samples, covering 447 clinically relevant proteins, using reverse-phase protein arrays. These protein expression profiles offer profound insights into intertumor heterogeneity and cancer dependency and serve as sensitive functional readouts for somatic alterations. We develop a systematic protein-centered strategy for identifying synthetic lethality pairs and experimentally validate an interaction between protein kinase A subunit α and epidermal growth factor receptor. We also identify metastasis-related protein markers with clinical relevance. This dataset represents a valuable resource for advancing our understanding of cancer mechanisms, discovering protein biomarkers and developing innovative therapeutic strategies. Liang and colleagues establish a high-quality protein expression resource for 8,000 The Cancer Genome Atlas patient samples and 900 Cancer Cell Line Encyclopedia cell lines for approximately 450 proteins, which they use to identify synthetic lethality pairs and metastasis markers.
癌症基因组图谱(TCGA)和癌症细胞系百科全书(CCLE)是癌症研究的基础资源,提供了大量的分子和表型数据。然而,这些队列中不同癌症类型的大规模蛋白质组数据仍然有限。在此,我们在先前工作的基础上,利用反相蛋白质阵列生成了约 8,000 份 TCGA 患者样本和约 900 份 CCLE 细胞系样本的高质量蛋白质表达数据,涵盖 447 种临床相关蛋白质。这些蛋白质表达谱为了解肿瘤间异质性和癌症依赖性提供了深刻的见解,并可作为体细胞改变的灵敏功能读数。我们开发了一种以蛋白质为中心的系统化策略,用于鉴定合成致死对,并通过实验验证了蛋白激酶 A 亚基 α 与表皮生长因子受体之间的相互作用。我们还鉴定了具有临床意义的转移相关蛋白标记物。这个数据集是我们了解癌症机制、发现蛋白质生物标记物和开发创新治疗策略的宝贵资源。
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引用次数: 0
Targeting IL-17A to combat immune-related adverse events 以 IL-17A 为靶点,应对免疫相关不良事件。
IF 23.5 1区 医学 Q1 ONCOLOGY Pub Date : 2024-08-29 DOI: 10.1038/s43018-024-00804-2
Kailan Sierra-Davidson, Genevieve M. Boland
The clinical utility of immune checkpoint inhibitors is limited by immune-related adverse events (irAEs); understanding the mechanisms of irAE development is thus crucial. A study reports that IL-17A-expressing CD4+ T cells were elevated at irAE onset and provides proof of concept for using IL-17A blockade to improve irAEs in two patients.
免疫检查点抑制剂的临床应用受到免疫相关不良事件(irAEs)的限制;因此,了解irAE的发生机制至关重要。一项研究报告称,IL-17A表达的CD4+ T细胞在irAE发生时升高,并提供了使用IL-17A阻断改善两名患者irAEs的概念证明。
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引用次数: 0
A targetable type III immune response with increase of IL-17A expressing CD4+ T cells is associated with immunotherapy-induced toxicity in melanoma 表达 IL-17A 的 CD4+ T 细胞增多的可靶向 III 型免疫反应与免疫疗法诱导的黑色素瘤毒性有关。
IF 23.5 1区 医学 Q1 ONCOLOGY Pub Date : 2024-08-29 DOI: 10.1038/s43018-024-00810-4
Florentia Dimitriou, Phil F. Cheng, Annalisa Saltari, Katrin Schaper-Gerhardt, Ramon Staeger, Veronika Haunerdinger, Federica Sella, Aizhan Tastanova, Christian Urban, Susanne Dettwiler, Daniela Mihic-Probst, Christian M. Matter, Olivier Michielin, Ralf Gutzmer, Georgina V. Long, Burkhard Becher, Mitchell P. Levesque, Reinhard Dummer
Immune checkpoint inhibitors are standard-of-care for the treatment of advanced melanoma, but their use is limited by immune-related adverse events. Proteomic analyses and multiplex cytokine and chemokine assays from serum at baseline and at the adverse event onset indicated aberrant T cell activity with differential expression of type I and III immune signatures. This was in line with the finding of an increase in the proportion of CD4+ T cells with IL-17A expression at the adverse event onset in the peripheral blood using flow cytometry. Multiplex immunohistochemistry and spatial transcriptomics on immunotherapy-induced skin rash and colitis showed an increase in the proportion of CD4+ T cells with IL-17A expression. Anti-IL-17A was administered in two patients with mild myocarditis, colitis and skin rash with resolution of the adverse events. This study highlights the potential role of type III CD4+ T cells in adverse event development and provides proof-of-principle evidence for a clinical trial using anti-IL-17A for treating adverse events. Dimitriou et al. perform multiomic profiling of patients with melanoma experiencing immunotherapy-associated toxicity and identify a targetable role for type III-associated immune responses with an increase in CD4+ T cells expressing IL-17A.
免疫检查点抑制剂是治疗晚期黑色素瘤的标准药物,但其使用受到免疫相关不良事件的限制。对基线和不良事件发生时的血清进行蛋白质组分析以及多重细胞因子和趋化因子检测表明,T细胞活性异常,I型和III型免疫特征的表达存在差异。这与流式细胞术发现的不良事件发生时外周血中表达 IL-17A 的 CD4+ T 细胞比例增加的结果一致。免疫疗法诱发的皮疹和结肠炎的多重免疫组化和空间转录组学显示,表达 IL-17A 的 CD4+ T 细胞比例增加。两名患有轻度心肌炎、结肠炎和皮疹的患者接受了抗IL-17A治疗,不良反应得到缓解。这项研究强调了 III 型 CD4+ T 细胞在不良事件发生中的潜在作用,并为使用抗 IL-17A 治疗不良事件的临床试验提供了原则性证据。
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引用次数: 0
Phase separation of phospho-HDAC6 drives aberrant chromatin architecture in triple-negative breast cancer 磷酸化 HDAC6 的相分离驱动三阴性乳腺癌染色质结构异常。
IF 23.5 1区 医学 Q1 ONCOLOGY Pub Date : 2024-08-28 DOI: 10.1038/s43018-024-00816-y
Bing Lu, Ru Qiu, Jiatian Wei, Li Wang, Qinkai Zhang, Mingsen Li, Xiudan Zhan, Jian Chen, I-Yun Hsieh, Ciqiu Yang, Jing Zhang, Zicheng Sun, Yifan Zhu, Tao Jiang, Han Zhu, Jie Li, Wei Zhao
How dysregulated liquid–liquid phase separation (LLPS) contributes to the oncogenesis of female triple-negative breast cancer (TNBC) remains unknown. Here we demonstrate that phosphorylated histone deacetylase 6 (phospho-HDAC6) forms LLPS condensates in the nuclei of TNBC cells that are essential for establishing aberrant chromatin architecture. The disordered N-terminal domain and phosphorylated residue of HDAC6 facilitate effective LLPS, whereas nuclear export regions exert a negative dominant effect. Through phase-separation-based screening, we identified Nexturastat A as a specific disruptor of phospho-HDAC6 condensates, which effectively suppresses tumor growth. Mechanistically, importin-β interacts with phospho-HDAC6, promoting its translocation to the nucleus, where 14-3-3θ mediates the condensate formation. Disruption of phospho-HDAC6 LLPS re-established chromatin compartments and topologically associating domain boundaries, leading to disturbed chromatin loops. The phospho-HDAC6-induced aberrant chromatin architecture affects chromatin accessibility, histone acetylation, RNA polymerase II elongation and transcriptional profiles in TNBC. This study demonstrates phospho-HDAC6 LLPS as an emerging mechanism underlying the dysregulation of chromatin architecture in TNBC. Lu et al. investigate the involvement of liquid–liquid phase separation in the progression of triple-negative breast cancer and find that phosphorylated histone deacetylase 6 forms condensates that affect chromatin accessibility and oncogenic transcriptional programs.
液-液相分离(LLPS)失调如何导致女性三阴性乳腺癌(TNBC)的肿瘤发生仍是一个未知数。在这里,我们证明了磷酸化组蛋白去乙酰化酶6(phospho-HDAC6)在TNBC细胞核中形成LLPS凝聚物,这对建立异常染色质结构至关重要。HDAC6 紊乱的 N 端结构域和磷酸化残基促进了有效的 LLPS,而核输出区域则产生了负面的主导作用。通过基于相分离的筛选,我们发现Nexturastat A是磷酸化HDAC6凝集物的特异性破坏者,它能有效抑制肿瘤生长。从机理上讲,导入素-β与磷酸化-HDAC6相互作用,促进其转位到细胞核,14-3-3θ介导凝集物的形成。磷酸-HDAC6 LLPS的破坏重建了染色质区室和拓扑关联域边界,导致染色质环路紊乱。磷酸化-HDAC6诱导的染色质结构异常会影响TNBC的染色质可及性、组蛋白乙酰化、RNA聚合酶II伸长和转录谱。这项研究表明,磷酸化 HDAC6 LLPS 是 TNBC 染色质结构失调的一种新机制。
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引用次数: 0
Clinical response and pathway-specific correlates following TIGIT–LAG3 blockade in myeloma: the MyCheckpoint randomized clinical trial TIGIT-LAG3阻断治疗骨髓瘤后的临床反应和通路特异性相关性:MyCheckpoint随机临床试验。
IF 23.5 1区 医学 Q1 ONCOLOGY Pub Date : 2024-08-26 DOI: 10.1038/s43018-024-00818-w
Shambavi Richard, Alexander M. Lesokhin, Barry Paul, Jonathan L. Kaufman, Matthew Pianko, Noa Biran, Ravi Vij, Deon B. Doxie, Maryam I. Azeem, Mercedes Martillo, Katie Wozniak, Hearn J. Cho, Kavita M. Dhodapkar, Madhav V. Dhodapkar
Persons with myeloma were randomized to receive an anti-TIGIT (T cell immunoreceptor) or anti-LAG3 (lymphocyte activation gene) antibody followed by combination with pomalidomide and dexamethasone ( NCT04150965 ). Primary and secondary endpoints were safety and efficacy, respectively. Therapy was well tolerated without dose-limiting toxicity. Durable clinical responses were observed in both the anti-TIGIT(three of six participants) and the anti-LAG3 (two of six participants) arms. Anti-LAG3 responders had higher naive cluster of differentiation 4 (CD4)-positive T cells and lower programmed cell death protein 1-positive effector T cells. Anti-TIGIT responders had higher CD226 expression, natural killer cell activation and lower CD112 expression. These data demonstrate the clinical activity of TIGIT–LAG3 blockade and identify pathway-specific response correlates in myeloma. Richard et al. perform a clinical trial of anti-TIGIT (T cell immunoreceptor) or anti-LAG3 (lymphocyte activation gene) antibody in combination with pomalidomide and dexamethasone in persons with multiple myeloma and define correlates of response using mass cytometry.
骨髓瘤患者被随机分配接受抗TIGIT(T细胞免疫受体)或抗LAG3(淋巴细胞活化基因)抗体,然后联合使用泊马度胺和地塞米松(NCT04150965)。主要和次要终点分别为安全性和有效性。治疗耐受性良好,无剂量限制性毒性。抗TIGIT治疗组(6名参与者中的3名)和抗LAG3治疗组(6名参与者中的2名)都观察到了持久的临床反应。抗LAG3应答者的幼稚分化4群(CD4)阳性T细胞较高,而程序性细胞死亡蛋白1阳性效应T细胞较低。抗TIGIT应答者的CD226表达和自然杀伤细胞活化程度较高,CD112表达较低。这些数据证明了TIGIT-LAG3阻断剂的临床活性,并确定了骨髓瘤中特异性反应途径的相关性。
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引用次数: 0
A comeback for checkpoint inhibition in multiple myeloma 检查点抑制剂在多发性骨髓瘤中卷土重来。
IF 23.5 1区 医学 Q1 ONCOLOGY Pub Date : 2024-08-26 DOI: 10.1038/s43018-024-00803-3
Maximilian Merz
Early trials of immune checkpoint inhibitors (ICIs) in multiple myeloma (MM) showed increased mortality, halting their development. A study now reports promising results and distinct changes in the immune microenvironment after TIGIT and LAG3 blockade in heavily pre-treated patients with MM, marking a potential revival for ICIs in MM therapy.
免疫检查点抑制剂(ICIs)在多发性骨髓瘤(MM)中的早期试验显示死亡率增加,从而停止了其开发。现在,一项研究报告了在重度预处理 MM 患者中阻断 TIGIT 和 LAG3 后取得的可喜成果和免疫微环境的明显变化,这标志着 ICIs 在 MM 治疗中的潜在复兴。
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引用次数: 0
BRD-810 is a highly selective MCL1 inhibitor with optimized in vivo clearance and robust efficacy in solid and hematological tumor models BRD-810 是一种高选择性 MCL1 抑制剂,具有优化的体内清除率,在实体瘤和血液肿瘤模型中疗效显著。
IF 23.5 1区 医学 Q1 ONCOLOGY Pub Date : 2024-08-23 DOI: 10.1038/s43018-024-00814-0
Ulrike Rauh, Guo Wei, Michael Serrano-Wu, Georgios Kosmidis, Stefan Kaulfuss, Franziska Siegel, Kai Thede, James McFarland, Christopher T. Lemke, Nicolas Werbeck, Katrin Nowak-Reppel, Sabine Pilari, Stephan Menz, Matthias Ocker, Weiqun Zhang, Kyle Davis, Guillaume Poncet-Montange, Jennifer Roth, Douglas Daniels, Virendar K. Kaushik, Brian Hubbard, Karl Ziegelbauer, Todd R. Golub
The MCL1 gene is frequently amplified in cancer and codes for the antiapoptotic protein myeloid cell leukemia 1 (MCL1), which confers resistance to the current standard of care. Therefore, MCL1 is an attractive anticancer target. Here we describe BRD-810 as a potent and selective MCL1 inhibitor and its key design principle of rapid systemic clearance to potentially minimize area under the curve-driven toxicities associated with MCL1 inhibition. BRD-810 induced rapid cell killing within 4 h in vitro but, in the same 4-h window, had no impact on cell viability or troponin I release in human induced pluripotent stem cell-derived cardiomyocytes, even at suprapharmacologic concentrations. In vivo BRD-810 induced efficacy in xenograft hematological and solid tumor models despite the short residence time of BRD-810 in plasma. In totality, our data support the hypothesis that short-term inhibition of MCL1 with BRD-810 can induce apoptosis in tumor cells while maintaining an acceptable safety profile. We, therefore, intend to advance BRD-810 to clinical trials. Rauh et al. developed a selective MCL1 inhibitor that is efficacious in hematological and solid tumors and has the advantage of limited cardiotoxicity because of more rapid clearance of the drug in vivo.
MCL1 基因在癌症中经常被扩增,它编码抗凋亡蛋白髓系细胞白血病 1(MCL1),该蛋白对目前的治疗标准具有抗药性。因此,MCL1 是一个极具吸引力的抗癌靶点。在此,我们介绍了作为一种强效、选择性 MCL1 抑制剂的 BRD-810,以及它的关键设计原则--快速全身清除,从而最大限度地降低与 MCL1 抑制相关的曲线下面积毒性。BRD-810能在体外4小时内快速杀死细胞,但在同一4小时窗口期内,即使在超药物浓度下,也不会影响细胞存活率或肌钙蛋白I在人诱导多能干细胞衍生心肌细胞中的释放。尽管BRD-810在血浆中的停留时间很短,但在体内BRD-810却能诱导异种移植血液肿瘤和实体肿瘤模型产生疗效。总之,我们的数据支持这样的假设,即用 BRD-810 短期抑制 MCL1 可以诱导肿瘤细胞凋亡,同时保持可接受的安全性。因此,我们打算将 BRD-810 推向临床试验。
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引用次数: 0
Single-cell atlas defines distinct immune escape mechanisms in colorectal cancer 单细胞图谱确定了结直肠癌中不同的免疫逃逸机制。
IF 23.5 1区 医学 Q1 ONCOLOGY Pub Date : 2024-08-23 DOI: 10.1038/s43018-024-00809-x
An integrative single-cell analysis of the human colorectum reveals tumor-associated cellular alterations and regulatory pathways. Patient stratification based on cellular composition of the tumor microenvironment suggests distinct immune evasion mechanisms in colorectal cancer.
对人类结直肠的单细胞综合分析揭示了与肿瘤相关的细胞改变和调节途径。根据肿瘤微环境的细胞组成对患者进行分层,表明结直肠癌具有不同的免疫逃避机制。
{"title":"Single-cell atlas defines distinct immune escape mechanisms in colorectal cancer","authors":"","doi":"10.1038/s43018-024-00809-x","DOIUrl":"10.1038/s43018-024-00809-x","url":null,"abstract":"An integrative single-cell analysis of the human colorectum reveals tumor-associated cellular alterations and regulatory pathways. Patient stratification based on cellular composition of the tumor microenvironment suggests distinct immune evasion mechanisms in colorectal cancer.","PeriodicalId":18885,"journal":{"name":"Nature cancer","volume":"5 9","pages":"1292-1293"},"PeriodicalIF":23.5,"publicationDate":"2024-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142046914","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dual inhibition of EGFR and PI3K with a single drug 用一种药物同时抑制表皮生长因子受体和 PI3K。
IF 23.5 1区 医学 Q1 ONCOLOGY Pub Date : 2024-08-16 DOI: 10.1038/s43018-024-00806-0
Meghri Katerji, Maxine R. Rubin, John Brognard
Precision medicine holds immense promise for treating individuals with cancer. A new study unveils MTX-531 — a drug that can inhibit two signaling proteins, EGFR and PI3K — which was developed through innovative computational drug design and offers new hope for more-effective and better-tolerated cancer treatments.
精准医疗为治疗癌症患者带来了巨大希望。一项新的研究揭示了 MTX-531--一种可以抑制表皮生长因子受体和 PI3K 这两种信号蛋白的药物--它是通过创新的计算药物设计开发出来的,为更有效、耐受性更好的癌症治疗带来了新的希望。
{"title":"Dual inhibition of EGFR and PI3K with a single drug","authors":"Meghri Katerji, Maxine R. Rubin, John Brognard","doi":"10.1038/s43018-024-00806-0","DOIUrl":"10.1038/s43018-024-00806-0","url":null,"abstract":"Precision medicine holds immense promise for treating individuals with cancer. A new study unveils MTX-531 — a drug that can inhibit two signaling proteins, EGFR and PI3K — which was developed through innovative computational drug design and offers new hope for more-effective and better-tolerated cancer treatments.","PeriodicalId":18885,"journal":{"name":"Nature cancer","volume":"5 8","pages":"1131-1133"},"PeriodicalIF":23.5,"publicationDate":"2024-08-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141996152","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Nature cancer
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