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SamplingDesign: RNA design via continuous optimization with coupled variables and Monte-Carlo sampling SamplingDesign:通过耦合变量和蒙特卡罗采样的连续优化来设计RNA
IF 16.6 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-20 DOI: 10.1038/s41467-025-67901-3
Wei Yu Tang, Ning Dai, Tianshuo Zhou, David H. Mathews, Liang Huang
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引用次数: 0
Regulating perovskite crystallization kinetics at laser scribe lines for efficient and stable perovskite modules 调节钙钛矿结晶动力学在激光划线线高效和稳定的钙钛矿模块
IF 16.6 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-20 DOI: 10.1038/s41467-026-69685-6
Yihuan Xie, Baojin Fan, Hongxiang Li, Chenxiang Gong, Zhaoyang Chu, Shaohua Zhang, Yong Zhang, Xiaotian Hu, Yiwang Chen
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引用次数: 0
Stress pinch points from glacial loading modulate magma ascent and storage in continental arcs 冰川负荷产生的应力掐点调节了大陆弧中岩浆的上升和储存
IF 16.6 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-20 DOI: 10.1038/s41467-026-69485-y
Meredith Townsend, Pablo Moreno-Yaeger, Andrew Harp, Christian Huber, Brad S. Singer
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引用次数: 0
A nutrient bottleneck controls antibiotic efficacy in structured bacterial populations. 营养瓶颈控制着抗生素在结构菌群中的疗效。
IF 15.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-20 DOI: 10.1038/s41467-026-69625-4
Anna M Hancock, Arabella S Dill-Macky, Jenna A Moore, Catherine Day, Mohamed S Donia, Sujit S Datta

Antibiotic resistance is a growing global health threat. Although antibiotic activity is well studied in homogeneous liquid cultures, many infections are caused by spatially structured multicellular populations where consumption of scarce nutrients establishes strong spatial variations in their abundance. These nutrient variations have long been hypothesized to help bacterial populations tolerate antibiotics, since liquid culture studies link antibiotic tolerance to metabolic activity, and thus, local nutrient availability. Here, we test this hypothesis by visualizing cell death in structured Escherichia coli populations exposed to select nutrients and antibiotics. We find that nutrient availability acts as a bottleneck to antibiotic killing, causing death to propagate through the population as a traveling front. By integrating our measurements with biophysical theory and simulations, we establish quantitative principles that explain how collective nutrient consumption can limit the progression of this "death front," protecting a population from a nominally deadly antibiotic dose. While increasing nutrient supply can overcome this bottleneck, in some cases, excess nutrient unexpectedly promotes the regrowth of resistant cells. Altogether, this work provides a key step toward predicting and controlling antibiotic treatment of spatially structured bacterial populations, yielding biophysical insights into collective behavior and guiding strategies for effective antibiotic stewardship.

抗生素耐药性是一个日益严重的全球健康威胁。虽然抗生素活性在均质液体培养物中得到了很好的研究,但许多感染是由空间结构的多细胞群体引起的,在这些群体中,稀缺营养物质的消耗在其丰度上形成了强烈的空间差异。长期以来,人们一直假设这些营养物质的变化有助于细菌种群耐受抗生素,因为液体培养研究将抗生素耐受性与代谢活动联系起来,从而与局部营养物质的可用性联系起来。在这里,我们通过可视化暴露于特定营养物质和抗生素的结构大肠杆菌群体中的细胞死亡来验证这一假设。我们发现,营养物质的可用性是抗生素杀灭的瓶颈,导致死亡在种群中传播。通过将我们的测量与生物物理理论和模拟相结合,我们建立了定量原则,解释了集体营养消耗如何限制这种“死亡前线”的发展,保护人群免受名义上致命的抗生素剂量的影响。虽然增加营养供应可以克服这一瓶颈,但在某些情况下,过量的营养会意外地促进抗性细胞的再生。总之,这项工作为预测和控制空间结构细菌种群的抗生素治疗提供了关键的一步,为集体行为提供了生物物理学的见解,并为有效的抗生素管理提供了指导策略。
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引用次数: 0
Competing hydrogen-bond orders drive water’s anomalous surface tension 相互竞争的氢键顺序驱动了水的异常表面张力
IF 16.6 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-20 DOI: 10.1038/s41467-026-69356-6
Jiaxing Yuan, Kun Qiu, Gang Sun, Hajime Tanaka
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引用次数: 0
Q4ddPCR: a flexible, 4-target assay for high-resolution HIV reservoir profiling Q4ddPCR:一种灵活的高分辨率HIV病毒库分析的4靶点检测方法
IF 16.6 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-20 DOI: 10.1038/s41467-026-69413-0
Rachel Scheck, Mark Melzer, Gregory Gladkov, Louise Leyre, Adam R. Ward, Daniel B. Reeves, Naomi Perkins, T. Thinh Huynh, Deborah K. McMahon, Ronald J. Bosch, Bernard J. Macatangay, Joshua C. Cyktor, Joseph J. Eron, John W. Mellors, Rajesh T. Gandhi, Lisa Buchauer, R. Brad Jones, Christian Gaebler
Precise and scalable quantification of the intact HIV reservoir is critical for advancing curative strategies. Current reservoir assays, such as the intact proviral DNA assay (IPDA), are limited by quantification failures or misclassification of defective proviruses due to HIV sequence heterogeneity. Q4ddPCR is a modular, droplet digital PCR simultaneously targeting four conserved regions in the HIV genome to improve specificity, reduce quantification gaps, and provide multi-layered readouts. It comprises two configurations: one fully based on Q4PCR primer/probes and one combining IPDA with gag and pol primer/probes from Q4PCR. We benchmark Q4ddPCR against 3650 near full-length proviral sequences from 13 virally suppressed people with HIV (PWH) generated by Q4PCR. Q4ddPCR closely matches sequence-confirmed reservoir measurements, and multi-probe readouts reveal clonal reservoir dynamics not detectable by IPDA. Q4ddPCR enables intact reservoir quantification in 95% of samples across four independent cohorts and in 16 PWH, strongly correlates with viral outgrowth. In longitudinal samples from 42 participants over the first 4.5 years on antiretroviral therapy (ART), Q4ddPCR reports lower proviral frequencies and a steeper decline in intact proviral DNA compared to IPDA. Collectively, our findings confirm key predictions from mathematical modeling, demonstrating that multi-target assays improve specificity and more accurately capture intact reservoir dynamics.
完整的HIV病毒库的精确和可扩展的量化对于推进治疗策略至关重要。目前的储存库分析,如完整原病毒DNA测定(IPDA),由于HIV序列异质性导致的定量失败或缺陷原病毒的错误分类而受到限制。Q4ddPCR是一种模块化的液滴数字PCR,同时靶向HIV基因组中的四个保守区域,以提高特异性,减少定量空白,并提供多层读数。它包括两种结构:一种完全基于Q4PCR引物/探针,另一种结合IPDA与Q4PCR的gag和pol引物/探针。我们将Q4ddPCR与由Q4PCR产生的13例HIV病毒抑制患者(PWH)的3650个近全长原序列进行比较。Q4ddPCR与序列确认的储层测量结果密切匹配,多探针读数揭示了IPDA无法检测到的克隆储层动态。Q4ddPCR能够在四个独立队列和16个PWH中95%的样本中进行完整的库定量,与病毒的生长密切相关。在接受抗逆转录病毒治疗(ART)的前4.5年的42名参与者的纵向样本中,与IPDA相比,Q4ddPCR报告了更低的前病毒频率和更急剧的完整前病毒DNA下降。总的来说,我们的研究结果证实了数学模型的关键预测,表明多靶点分析提高了特异性,更准确地捕获了完整的油藏动态。
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引用次数: 0
A red/blue optoswitch for temporal control of chloroplast transcription and biogenesis in Arabidopsis. 红/蓝光开关对拟南芥叶绿体转录和生物发生的时间控制。
IF 15.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-20 DOI: 10.1038/s41467-026-69626-3
Finia Uecker, Frederik M Ahrens, Tim Ruder, Thomas Pfannschmidt

Photosynthesis genes in plant chloroplasts are transcribed by the plastid-encoded RNA polymerase called PEP. Consequently, PEP-deficient mutants cannot generate a photosynthetic apparatus and develop non-viable albino seedlings. Inducible complementation of such mutants thus could provide interesting insights in PEP action and chloroplast biogenesis. Here we show the effects of photo-inducible complementation in the albino Arabidopsis mutant pap7-1 using a red/blue optoswitch with monochromatic LEDs. Expression of a blue-light-induced PAP7 construct that is silent under red light reconstitutes PEP at any time point of pap7-1 development resulting in proper chloroplast biogenesis that rescues the non-viable mutant. Induction of chloroplast biogenesis, however, can only occur in very young leaf tissues indicating the existence of a cell-autonomous, biogenic coupling between cell and organelle development. We further uncover that initial PEP formation and function is independent of photosynthesis. The optoswitch termed blue-light valved biogenesis opens experimental avenues to study non-viable plant mutants.

植物叶绿体中的光合作用基因通过被称为PEP的质体编码RNA聚合酶进行转录。因此,缺乏pep的突变体不能产生光合作用装置,也不能发育出无法存活的白化病幼苗。因此,这些突变体的诱导互补可以为PEP作用和叶绿体生物发生提供有趣的见解。在这里,我们展示了利用单色led的红/蓝光开关对白化拟南芥突变体pap7-1的光诱导互补效应。在红光下沉默的蓝光诱导的PAP7构建体的表达在PAP7 -1发育的任何时间点重建PEP,导致适当的叶绿体生物发生,从而挽救了不存活的突变体。然而,叶绿体生物发生的诱导只能发生在非常年轻的叶片组织中,这表明细胞和细胞器发育之间存在细胞自主的生物发生偶联。我们进一步发现初始PEP的形成和功能与光合作用无关。这种被称为蓝光阀生物发生的光开关为研究非活的植物突变体开辟了实验途径。
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引用次数: 0
Antibody waning and Bordetella pertussis resurgence after the COVID-19 pandemic in the Netherlands. 荷兰新冠肺炎疫情后,抗体减弱,百日咳杆菌死灰复燃。
IF 15.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-20 DOI: 10.1038/s41467-026-69885-0
Channah M Gaasbeek, Eric R A Vos, Annika M van Roon, Dimphey van Meijeren, Gaby Smits, Marjan Kuijer, Marion Koopmans, Hester de Melker, Fiona R M van der Klis, Rob van Binnendijk, Gerco den Hartog

After relative absence of Bordetella pertussis during the COVID-19 pandemic, notifications in the Netherlands were increased from May 2023 till September 2024. We monitored the largest pertussis outbreak in decades and investigated underlying immunological dynamics based on IgG and IgA antibodies against pertussis antigens (Ptx, FHA & Prn). We analyzed serum from 418 participants (2-87 years) at five timepoints (November 2022-October 2024) from a nationwide prospective serosurveillance study (PIENTER-Corona). Weighted incidence over two years was 6.3% (95% CI: 4.4-8.2) in the Dutch population, and 35% (95% CI: 26.2-44.6) in 6-18y-olds. Children aged 6-12 years, who received a booster vaccination at 4 years, showed lowest anti-Ptx IgG concentrations after the period of reduced circulation. Infected individuals had lower pre-infection anti-FHA IgG and IgA concentrations than matched uninfected individuals. Prolonged coughing was reported by 16% of the infected individuals. Our findings highlight the B. pertussis outbreak was preceded by waning immunity, particularly after acellular pertussis booster vaccination. The small proportion of symptomatic infections implies sufficient protection by the vaccine against disease but not transmission.

在2019冠状病毒病大流行期间相对缺乏百日咳博德泰拉之后,荷兰的通报从2023年5月到2024年9月有所增加。我们监测了几十年来最大的百日咳爆发,并研究了基于针对百日咳抗原(Ptx, FHA和Prn)的IgG和IgA抗体的潜在免疫动力学。我们分析了418名参与者(2-87岁)在5个时间点(2022年11月至2024年10月)的血清,这些参与者来自一项全国前瞻性血清监测研究(pientert - corona)。荷兰人群两年加权发病率为6.3% (95% CI: 4.4-8.2), 6-18岁人群为35% (95% CI: 26.2-44.6)。6-12岁的儿童,在4岁时接受加强疫苗接种,在循环减少期后显示出最低的抗ptx IgG浓度。感染个体感染前抗fha IgG和IgA浓度低于匹配的未感染个体。16%的感染者报告长时间咳嗽。我们的研究结果强调百日咳爆发之前,免疫力下降,特别是在无细胞百日咳加强疫苗接种后。有症状感染的比例很小,意味着疫苗对疾病有足够的保护,但对传播没有足够的保护。
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引用次数: 0
Oriented ion migration in dielectric Sb4O5Cl2 single crystals for multifunctional two-dimensional electronics. 面向离子迁移的电介质Sb4O5Cl2单晶多功能二维电子学。
IF 15.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-20 DOI: 10.1038/s41467-026-69869-0
Zexin Li, Genchang Gou, Xiang Xu, Haoyun Wang, Teng Liu, Hao Luo, Jinsong Wu, Kailang Liu, Liang Gao, Tianyou Zhai, Xing Zhou

Exploring dielectrics with high gate capacitance and artificial tailoring of electronic states is highly desirable for the development of 2D electronics. Here, we report the synthesis of a single-crystalline ionic dielectric Sb4O5Cl2 with aligned ionic channels, achieving a dielectric constant of 23.3 (at a thickness of ~ 25 nm) and non-volatile programmable regulation of the ionic migration. The fabricated 2D MoS2 transistors display on/off ratios up to 109, leakage currents down to 10-14 A, and mobility of 33.4 cm2 V-1 s-1. Oriented ionic channels facilitate efficient and controllable migration of Cl- ions, thus realizing a non-structural-damage and reconfigurable transition between a quasi-metallic and semiconducting state in MoS2, with a retention time exceeding 3000 s. During 100 cycles of state transitions, the quasi-metallic state exhibits a conductivity of 10-5 S, which is 103 times that of the semiconducting state. Bio-inspired ionic channel further allows neuromorphic devices to integrate image storage, processing, and recognition capabilities, achieving a recognition accuracy improvement from 80.7% to 90.9% within just 5 training epochs through non-volatile preprocessing lasting over 300 s. Our study highlights the significant potential of this single-crystal ionic dielectric as a promising platform for fundamental research on electronic state modulation and advanced electronics.

探索具有高栅极电容和电子态人工裁剪的介电体是二维电子学发展的迫切需要。在这里,我们报道了一种具有排列离子通道的单晶离子电介质Sb4O5Cl2的合成,实现了23.3的介电常数(约25 nm的厚度)和非易失性的可编程离子迁移调节。所制备的2D MoS2晶体管的通/关比高达109,漏电流低至10-14 A,迁移率为33.4 cm2 V-1 s-1。定向离子通道促进了Cl-离子高效可控的迁移,从而实现了二硫化钼在准金属态和半导体态之间的非结构损伤和可重构转变,保留时间超过3000 s。在100个周期的状态转变中,准金属态的电导率为10-5 S,是半导体态的103倍。仿生离子通道进一步允许神经形态设备集成图像存储,处理和识别功能,通过持续超过300秒的非易失性预处理,在短短5个训练周期内实现识别精度从80.7%提高到90.9%。我们的研究强调了这种单晶离子电介质作为电子状态调制和先进电子学基础研究的有前途的平台的巨大潜力。
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引用次数: 0
Phosphoglycerate dehydrogenase-mediated serine reprogramming aggravates macrophage hyperinflammation in murine Pseudomonas aeruginosa pneumonia 磷酸甘油酸脱氢酶介导的丝氨酸重编程加重小鼠铜绿假单胞菌肺炎的巨噬细胞过度炎症
IF 16.6 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-20 DOI: 10.1038/s41467-026-69539-1
Rong Chen, Ran Zeng, Mengmeng Shi, Guoliang Zhang, Feiyang Wang, Qingyuan Yang, Yanshan Jiang, Yuxuan Zhang, Yanan Li, Jieming Qu
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引用次数: 0
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