Pub Date : 2026-01-20DOI: 10.1038/s41467-026-68641-8
Phillip M Mackie, Joanne M Koshy, Mauli H Bhogade, Tristan Hammoor, William Hachmeister, Grace M Lloyd, Giavanna Paterno, Mackenzie L Bolen, Andrea Merchak, Malu Gamez-Tansey, Benoit I Giasson, Habibeh Khoshbouei
Deposition of misfolded α-synuclein (αsyn) in the enteric nervous system (ENS) is found in multiple neurodegenerative diseases. It is hypothesized that ENS synucleinopathy contributes to both the pathogenesis and non-motor morbidity in Parkinson's Disease (PD), but the cellular and molecular mechanisms that shape enteric histopathology and dysfunction are poorly understood. Here, we employ a fibrillar injection model of enteric synucleinopathy in male mice and demonstrate that ENS-resident macrophages, which play a critical role in maintaining ENS homeostasis, initially respond to enteric neuronal αsyn pathology by upregulating machinery for complement-mediated engulfment. Pharmacologic depletion of ENS-macrophages or genetic deletion of C1q enhanced enteric neuropathology. Conversely, C1q deletion ameliorated gut dysfunction, indicating that complement partially mediates αsyn-induced gut dysfunction. However, this C1q-dependent clearance mechanism diminished over time and its failure temporally correlated with the further increase in ENS pathology. These findings highlight the importance of enteric neuron-macrophage interactions in removing toxic protein aggregates that putatively shape the gastrointestinal manifestations of PD.
{"title":"C1q-dependent clearance of alpha-synuclein allows macrophages to transiently limit enteric synucleinopathy in male mice.","authors":"Phillip M Mackie, Joanne M Koshy, Mauli H Bhogade, Tristan Hammoor, William Hachmeister, Grace M Lloyd, Giavanna Paterno, Mackenzie L Bolen, Andrea Merchak, Malu Gamez-Tansey, Benoit I Giasson, Habibeh Khoshbouei","doi":"10.1038/s41467-026-68641-8","DOIUrl":"https://doi.org/10.1038/s41467-026-68641-8","url":null,"abstract":"<p><p>Deposition of misfolded α-synuclein (αsyn) in the enteric nervous system (ENS) is found in multiple neurodegenerative diseases. It is hypothesized that ENS synucleinopathy contributes to both the pathogenesis and non-motor morbidity in Parkinson's Disease (PD), but the cellular and molecular mechanisms that shape enteric histopathology and dysfunction are poorly understood. Here, we employ a fibrillar injection model of enteric synucleinopathy in male mice and demonstrate that ENS-resident macrophages, which play a critical role in maintaining ENS homeostasis, initially respond to enteric neuronal αsyn pathology by upregulating machinery for complement-mediated engulfment. Pharmacologic depletion of ENS-macrophages or genetic deletion of C1q enhanced enteric neuropathology. Conversely, C1q deletion ameliorated gut dysfunction, indicating that complement partially mediates αsyn-induced gut dysfunction. However, this C1q-dependent clearance mechanism diminished over time and its failure temporally correlated with the further increase in ENS pathology. These findings highlight the importance of enteric neuron-macrophage interactions in removing toxic protein aggregates that putatively shape the gastrointestinal manifestations of PD.</p>","PeriodicalId":19066,"journal":{"name":"Nature Communications","volume":" ","pages":""},"PeriodicalIF":15.7,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146003931","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-20DOI: 10.1038/s41467-025-65569-3
K Tsoukalas, U von Lüpke, A Orekhov, B Hetényi, I Seidler, L Sommer, E G Kelly, L Massai, M Aldeghi, M Pita-Vidal, N W Hendrickx, S W Bedell, S Paredes, F J Schupp, M Mergenthaler, G Salis, A Fuhrer, P Harvey-Collard
In semiconductor hole spin qubits, low magnetic field (B) operation extends the coherence time ( ) but proportionally reduces the gate speed. In contrast, singlet-triplet (ST) qubits are primarily controlled by the exchange interaction ( J) and can thus maintain high gate speeds even at low B. However, a large J introduces a significant charge component to the qubit, rendering ST qubits more vulnerable to charge noise when driven. Here, we demonstrate a highly coherent ST hole spin qubit in germanium, operating at both low B and low J. By modulating J, we achieve resonant driving of the ST qubit, obtaining an average gate fidelity of 99.68% and a coherence time of . Moreover, by applying the resonant drive continuously, we realize a dressed ST qubit with a tenfold increase in coherence time ( ). Frequency modulation of the driving signal enables universal control, with an average gate fidelity of 99.63%. Our results demonstrate the potential for extending coherence times while preserving high-fidelity control of germanium-based ST qubits, paving the way for more efficient operations in semiconductor-based quantum processors.
{"title":"A dressed singlet-triplet qubit in germanium.","authors":"K Tsoukalas, U von Lüpke, A Orekhov, B Hetényi, I Seidler, L Sommer, E G Kelly, L Massai, M Aldeghi, M Pita-Vidal, N W Hendrickx, S W Bedell, S Paredes, F J Schupp, M Mergenthaler, G Salis, A Fuhrer, P Harvey-Collard","doi":"10.1038/s41467-025-65569-3","DOIUrl":"https://doi.org/10.1038/s41467-025-65569-3","url":null,"abstract":"<p><p>In semiconductor hole spin qubits, low magnetic field (B) operation extends the coherence time ( <math> <msubsup><mrow><mi>T</mi></mrow> <mrow><mn>2</mn></mrow> <mrow><mo>*</mo></mrow> </msubsup> </math> ) but proportionally reduces the gate speed. In contrast, singlet-triplet (ST) qubits are primarily controlled by the exchange interaction ( J) and can thus maintain high gate speeds even at low B. However, a large J introduces a significant charge component to the qubit, rendering ST qubits more vulnerable to charge noise when driven. Here, we demonstrate a highly coherent ST hole spin qubit in germanium, operating at both low B and low J. By modulating J, we achieve resonant driving of the ST qubit, obtaining an average gate fidelity of 99.68% and a coherence time of <math> <msubsup><mrow><mi>T</mi></mrow> <mrow><mn>2</mn></mrow> <mrow><mo>*</mo></mrow> </msubsup> <mo>=</mo> <mn>1.9</mn> <mspace></mspace> <mi>μ</mi> <mi>s</mi></math> . Moreover, by applying the resonant drive continuously, we realize a dressed ST qubit with a tenfold increase in coherence time ( <math> <msubsup><mrow><mi>T</mi></mrow> <mrow><mn>2</mn> <mi>ρ</mi></mrow> <mrow><mo>*</mo></mrow> </msubsup> <mo>=</mo> <mn>20.3</mn> <mspace></mspace> <mi>μ</mi> <mi>s</mi></math> ). Frequency modulation of the driving signal enables universal control, with an average gate fidelity of 99.63%. Our results demonstrate the potential for extending coherence times while preserving high-fidelity control of germanium-based ST qubits, paving the way for more efficient operations in semiconductor-based quantum processors.</p>","PeriodicalId":19066,"journal":{"name":"Nature Communications","volume":"17 1","pages":"699"},"PeriodicalIF":15.7,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146011339","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-20DOI: 10.1038/s41467-025-67507-9
Aoba Yoshioka, Yoshiki Y Shimada, Toshihiro Omori, Naoki A Uemura, Kazutaka Takeshita, Kota Ishigami, Hiroyuki Morimura, Maiko Furubayashi, Tetsuo Kan, Hirofumi Wada, Yoshitomo Kikuchi, Daisuke Nakane
Confined spaces are omnipresent in the micro-environments, including soil aggregates and intestinal crypts, yet little is known about how bacteria behave under such conditions where movement is challenging due to spatial confinement that limited effective diffusion. Stinkbug symbiont Caballeronia insecticola navigates a narrow gut passage about one micrometer in diameter to reach the stinkbug's symbiotic organ. Here, we developed a microfluidic device mimicking the host's sorting organ, wherein bacterial cells are confined in a quasi-one-dimensional fashion, and revealed that this bacterium wraps flagellar filaments around its cell body like a screw thread to control fluid flow and generate propulsion for smooth and directional movement in narrow passages. Physical simulations and genetic experiments revealed that hook flexibility is essential for this wrapping; increasing hook rigidity impaired both wrapping motility and infectivity. Thus, flagellar wrapping likely represents an evolutionary innovation, enabling bacteria to break through confined environments using their motility machinery.
{"title":"Bacteria break through one-micrometer-square passages by flagellar wrapping.","authors":"Aoba Yoshioka, Yoshiki Y Shimada, Toshihiro Omori, Naoki A Uemura, Kazutaka Takeshita, Kota Ishigami, Hiroyuki Morimura, Maiko Furubayashi, Tetsuo Kan, Hirofumi Wada, Yoshitomo Kikuchi, Daisuke Nakane","doi":"10.1038/s41467-025-67507-9","DOIUrl":"https://doi.org/10.1038/s41467-025-67507-9","url":null,"abstract":"<p><p>Confined spaces are omnipresent in the micro-environments, including soil aggregates and intestinal crypts, yet little is known about how bacteria behave under such conditions where movement is challenging due to spatial confinement that limited effective diffusion. Stinkbug symbiont Caballeronia insecticola navigates a narrow gut passage about one micrometer in diameter to reach the stinkbug's symbiotic organ. Here, we developed a microfluidic device mimicking the host's sorting organ, wherein bacterial cells are confined in a quasi-one-dimensional fashion, and revealed that this bacterium wraps flagellar filaments around its cell body like a screw thread to control fluid flow and generate propulsion for smooth and directional movement in narrow passages. Physical simulations and genetic experiments revealed that hook flexibility is essential for this wrapping; increasing hook rigidity impaired both wrapping motility and infectivity. Thus, flagellar wrapping likely represents an evolutionary innovation, enabling bacteria to break through confined environments using their motility machinery.</p>","PeriodicalId":19066,"journal":{"name":"Nature Communications","volume":"17 1","pages":"713"},"PeriodicalIF":15.7,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146011408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-20DOI: 10.1038/s41467-026-68664-1
Luis G B Campos,Francois-Marie Allioux,Gustavo Fimbres Weihs,Sarina Sarina,Anthony P O'Mullane,Torben Daeneke,Richard B Kaner,Kourosh Kalantar-Zadeh
Hydrogen is a clean energy carrier with significant promises for a sustainable future, yet many established production routes operate under undesirable conditions or constraints, motivating the search for alternative production pathways. Here, our approach uses photothermal oxidation of liquid gallium to generate hydrogen from both freshwater and seawater. The exposure to light thermally heats up liquid gallium droplets to a temperature suitable for fast gallium-water interaction, producing gallium oxyhydroxide and hydrogen. The light exposure also boosts the reaction by breaking the oxide layer on the surface of liquid gallium immersed in water, allowing continuous interactions between the water molecules and the surface of liquid gallium droplets. The gallium oxyhydroxide that is produced can be electrochemically reduced, allowing metal regeneration, thereby enabling circular hydrogen production. In this work, we show that photothermal activation of liquid gallium provides a rapid and circular route for generating hydrogen from diverse water sources.
{"title":"Low temperature and rapid photothermal oxidation of liquid gallium for circular hydrogen production.","authors":"Luis G B Campos,Francois-Marie Allioux,Gustavo Fimbres Weihs,Sarina Sarina,Anthony P O'Mullane,Torben Daeneke,Richard B Kaner,Kourosh Kalantar-Zadeh","doi":"10.1038/s41467-026-68664-1","DOIUrl":"https://doi.org/10.1038/s41467-026-68664-1","url":null,"abstract":"Hydrogen is a clean energy carrier with significant promises for a sustainable future, yet many established production routes operate under undesirable conditions or constraints, motivating the search for alternative production pathways. Here, our approach uses photothermal oxidation of liquid gallium to generate hydrogen from both freshwater and seawater. The exposure to light thermally heats up liquid gallium droplets to a temperature suitable for fast gallium-water interaction, producing gallium oxyhydroxide and hydrogen. The light exposure also boosts the reaction by breaking the oxide layer on the surface of liquid gallium immersed in water, allowing continuous interactions between the water molecules and the surface of liquid gallium droplets. The gallium oxyhydroxide that is produced can be electrochemically reduced, allowing metal regeneration, thereby enabling circular hydrogen production. In this work, we show that photothermal activation of liquid gallium provides a rapid and circular route for generating hydrogen from diverse water sources.","PeriodicalId":19066,"journal":{"name":"Nature Communications","volume":"31 1","pages":""},"PeriodicalIF":16.6,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146005280","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Aliphatic amines, such as N,N-dialkyl secondary amines, represent important scaffolds in bioactive molecules, driving significant interest in their regio- and stereoselective C-H functionalisation. While hydrogen atom transfer (HAT) provides a powerful radical-based approach to elaborate such amines, achieving controllable, regio-divergent, and enantioselective functionalisation across different N-alkyl groups remains challenging. Herein, we report a Cu-catalyzed α'/β-regiodivergent and β-enantioselective cyanation of secondary amine-derived ureas through tunable 1,4'/1,5-HAT. The utilization of a sterically demanding ligand L14 enables the excellent α'-selective C-H cyanation at the N-methyl position, while two developed ligands (L24 and L41) promote the β-chirality construction at the other N-alkyl group. The approach is demonstrated for a broad scope of ureas with wide functional group compatibility. Experimental and computational studies reveal two distinct reaction pathways regarding the different reactive sites (α'/β) and the choice of ligands could significantly influence the selectivity in HAT process.
{"title":"Ligand-controlled regiodivergent and enantioselective C-H cyanation of secondary amines.","authors":"Yang-Jie Mao,Xiahe Chen,Huan-Le Li,Qi Pan,Kun Zhou,Zhen-Yuan Xu,Yun-Fang Yang,Shao-Jie Lou,Dan-Qian Xu","doi":"10.1038/s41467-026-68598-8","DOIUrl":"https://doi.org/10.1038/s41467-026-68598-8","url":null,"abstract":"Aliphatic amines, such as N,N-dialkyl secondary amines, represent important scaffolds in bioactive molecules, driving significant interest in their regio- and stereoselective C-H functionalisation. While hydrogen atom transfer (HAT) provides a powerful radical-based approach to elaborate such amines, achieving controllable, regio-divergent, and enantioselective functionalisation across different N-alkyl groups remains challenging. Herein, we report a Cu-catalyzed α'/β-regiodivergent and β-enantioselective cyanation of secondary amine-derived ureas through tunable 1,4'/1,5-HAT. The utilization of a sterically demanding ligand L14 enables the excellent α'-selective C-H cyanation at the N-methyl position, while two developed ligands (L24 and L41) promote the β-chirality construction at the other N-alkyl group. The approach is demonstrated for a broad scope of ureas with wide functional group compatibility. Experimental and computational studies reveal two distinct reaction pathways regarding the different reactive sites (α'/β) and the choice of ligands could significantly influence the selectivity in HAT process.","PeriodicalId":19066,"journal":{"name":"Nature Communications","volume":"88 1","pages":""},"PeriodicalIF":16.6,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146005186","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
UFMylation, a ubiquitin-like modification, is crucial for cellular processes and is linked to human diseases, including cancer. However, its role in cancer remains unclear. Here, we report that UFL1 promotes breast tumor growth by remodeling lipid metabolism. Mechanistically, UFL1 interacts with and UFMylates AKT, enhancing its localization at the endoplasmic reticulum and phosphorylation by PDK1 and mTORC2, thereby increasing AKT-mediated lipid synthesis. Moreover, AKT phosphorylates UFL1, boosting its activity. Thus, UFL1 and AKT form a positive feedback loop, accelerating lipid synthesis and breast tumor growth. Clinically, UFL1 levels are increased in human breast tumors and are associated with poor clinical outcomes in breast cancer patients. Importantly, UFMylation inhibitors sensitize breast cancer cells to AKT inhibitors and anticancer drugs. Our findings reveal a critical role for UFMylation in lipid metabolism and identify the UFL1-AKT axis as a potential therapeutic target in breast cancer.
{"title":"The UFL1-AKT positive feedback loop promotes breast cancer progression by enhancing lipid synthesis.","authors":"Fei Meng,Yating Du,Junjie Liang,Huiyan Li,Jingjing Wang,Kexin Tang,Ruixue Kong,Huanran Sun,Tingting Yin,Junru Qin,Xiaomeng Yang,Changliang Shan,Min Liu,Guiwen Yang,Jichun Zhang,Yijie Wang,Jun Zhou,Yan Chen","doi":"10.1038/s41467-026-68492-3","DOIUrl":"https://doi.org/10.1038/s41467-026-68492-3","url":null,"abstract":"UFMylation, a ubiquitin-like modification, is crucial for cellular processes and is linked to human diseases, including cancer. However, its role in cancer remains unclear. Here, we report that UFL1 promotes breast tumor growth by remodeling lipid metabolism. Mechanistically, UFL1 interacts with and UFMylates AKT, enhancing its localization at the endoplasmic reticulum and phosphorylation by PDK1 and mTORC2, thereby increasing AKT-mediated lipid synthesis. Moreover, AKT phosphorylates UFL1, boosting its activity. Thus, UFL1 and AKT form a positive feedback loop, accelerating lipid synthesis and breast tumor growth. Clinically, UFL1 levels are increased in human breast tumors and are associated with poor clinical outcomes in breast cancer patients. Importantly, UFMylation inhibitors sensitize breast cancer cells to AKT inhibitors and anticancer drugs. Our findings reveal a critical role for UFMylation in lipid metabolism and identify the UFL1-AKT axis as a potential therapeutic target in breast cancer.","PeriodicalId":19066,"journal":{"name":"Nature Communications","volume":"183 1","pages":"614"},"PeriodicalIF":16.6,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146005243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-20DOI: 10.1038/s41467-026-68662-3
Chun Wan,Jingyi Wu,Yan Ouyang,Harrison Puscher,Yuan Tian,Suzhao Li,Qian Yin,Jingshi Shen
Bidirectional trafficking between the trans-Golgi network (TGN) and endolysosomal compartments lies at the intersection of biosynthetic and degradative pathways. At the center of this trafficking route is the adaptor protein complex 1 (AP1), a heterotetramer essential for cargo recognition and vesicle budding. Here, we identified Male-Enhanced Antigen 1 (MEA1), a previously uncharacterized protein, as a critical AP1 regulator. Loss of MEA1 resulted in depletion of AP1 subunits and impaired trafficking of AP1-dependent cargoes. Mechanistically, MEA1 acts as a bi-handed chaperone, simultaneously engaging and stabilizing the μ1 and β1 subunits of AP1. The MEA1-stabilized μ1 and β1 collide with the γ and σ1 subunits stabilized by Alpha- and Gamma-Adaptin Binding Protein (AAGAB), another bi-handed chaperone, leading to formation of the tetrameric AP1 adaptor and release of both chaperones. These findings identify MEA1 as a key AP1 regulator and uncover a dual chaperone collision mechanism potentially generalizable to multiprotein complex assembly.
{"title":"Regulation of AP1 adaptor assembly by the bi-handed chaperone MEA1.","authors":"Chun Wan,Jingyi Wu,Yan Ouyang,Harrison Puscher,Yuan Tian,Suzhao Li,Qian Yin,Jingshi Shen","doi":"10.1038/s41467-026-68662-3","DOIUrl":"https://doi.org/10.1038/s41467-026-68662-3","url":null,"abstract":"Bidirectional trafficking between the trans-Golgi network (TGN) and endolysosomal compartments lies at the intersection of biosynthetic and degradative pathways. At the center of this trafficking route is the adaptor protein complex 1 (AP1), a heterotetramer essential for cargo recognition and vesicle budding. Here, we identified Male-Enhanced Antigen 1 (MEA1), a previously uncharacterized protein, as a critical AP1 regulator. Loss of MEA1 resulted in depletion of AP1 subunits and impaired trafficking of AP1-dependent cargoes. Mechanistically, MEA1 acts as a bi-handed chaperone, simultaneously engaging and stabilizing the μ1 and β1 subunits of AP1. The MEA1-stabilized μ1 and β1 collide with the γ and σ1 subunits stabilized by Alpha- and Gamma-Adaptin Binding Protein (AAGAB), another bi-handed chaperone, leading to formation of the tetrameric AP1 adaptor and release of both chaperones. These findings identify MEA1 as a key AP1 regulator and uncover a dual chaperone collision mechanism potentially generalizable to multiprotein complex assembly.","PeriodicalId":19066,"journal":{"name":"Nature Communications","volume":"5 1","pages":""},"PeriodicalIF":16.6,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146005573","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-20DOI: 10.1038/s41467-026-68360-0
Joel Vega-Badillo, Phillip D Zamore, Karina Jouravleva
MicroRNAs direct Argonaute proteins to repress complementary target mRNAs via mRNA degradation or translational inhibition. While mammalian miRNA targeting has been well studied, the principles by which Drosophila miRNAs bind their target RNAs remain to be fully characterized. Here, we use RNA Bind-n-Seq to systematically identify binding sites and measure their affinities for five highly expressed Drosophila miRNAs. Our results reveal a narrower range of binding site diversity in flies compared to mammals, with fly miRNAs favoring canonical seed-matched sites and exhibiting limited tolerance for imperfections within these sites. We also identified non-canonical site types, including nucleation-bulged and 3'-only sites, whose binding affinities are comparable to canonical sites. These findings establish a foundation for future computational models of Drosophila miRNA targeting, enabling predictions of regulatory outcomes in response to cellular signals, and advancing our understanding of miRNA-mediated regulation in flies.
{"title":"Biochemical principles of miRNA targeting in flies.","authors":"Joel Vega-Badillo, Phillip D Zamore, Karina Jouravleva","doi":"10.1038/s41467-026-68360-0","DOIUrl":"https://doi.org/10.1038/s41467-026-68360-0","url":null,"abstract":"<p><p>MicroRNAs direct Argonaute proteins to repress complementary target mRNAs via mRNA degradation or translational inhibition. While mammalian miRNA targeting has been well studied, the principles by which Drosophila miRNAs bind their target RNAs remain to be fully characterized. Here, we use RNA Bind-n-Seq to systematically identify binding sites and measure their affinities for five highly expressed Drosophila miRNAs. Our results reveal a narrower range of binding site diversity in flies compared to mammals, with fly miRNAs favoring canonical seed-matched sites and exhibiting limited tolerance for imperfections within these sites. We also identified non-canonical site types, including nucleation-bulged and 3'-only sites, whose binding affinities are comparable to canonical sites. These findings establish a foundation for future computational models of Drosophila miRNA targeting, enabling predictions of regulatory outcomes in response to cellular signals, and advancing our understanding of miRNA-mediated regulation in flies.</p>","PeriodicalId":19066,"journal":{"name":"Nature Communications","volume":" ","pages":""},"PeriodicalIF":15.7,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146011310","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-20DOI: 10.1038/s41467-025-67868-1
Tao Zheng, Keerthana Ramanathan, Maria Ormhøj, Mikkel Rasmus Hansen, Hólmfridur Rósa Halldórsdóttir, Hanxi Li, Kamilla Kjærgaard Munk, Carlos Rodriguez-Pardo, Rasmus Ulslev Wegener Friis, Islam Seder, Peter M H Heegaard, Klaus Qvortrup, Hinrich Abken, Yi Sun, Sine Reker Hadrup
Adoptive T cell therapy using chimeric antigen receptor (CAR) engineered T cells is currently being explored in multiple cancer types beyond leukemia/lymphoma. A key step in CAR-T cell manufacturing is the activation and expansion of T cells, which facilitates viral transduction, however, may hamper T cell fitness and reduce in vivo persistence. "T-Expand" is developed for T cell activation and expansion, comprising dextran-based nanoparticles conjugated with anti-CD3 and anti-CD28 antibodies. The nanoparticles trigger robust polyclonal expansion of human T cells with efficiency in the range of commercial microbeads (Dynabeads™). Engineered in the presence of T-Expand, CD19 CAR T cells display enhanced proliferative capacity, cytotoxicity and persistence in vitro, and furthermore, exhibit potent anti-lymphoma activity in mouse models, resulting in complete tumor clearance at one fourth of the CAR T cell dose. Importantly, T-Expand is biocompatible with no observed toxicity, circumventing removal steps after T cell expansion compared to DynabeadsTM. As a biocompatible T cell expansion platform, T-Expand simplifies the manufacturing process while enhancing T cell persistence and functionality, and thereby holds promise for increasing clinical efficacy of CAR T cell therapy.
{"title":"Dextran-based T-cell expansion nanoparticles for manufacturing CAR T cells with augmented efficacy.","authors":"Tao Zheng, Keerthana Ramanathan, Maria Ormhøj, Mikkel Rasmus Hansen, Hólmfridur Rósa Halldórsdóttir, Hanxi Li, Kamilla Kjærgaard Munk, Carlos Rodriguez-Pardo, Rasmus Ulslev Wegener Friis, Islam Seder, Peter M H Heegaard, Klaus Qvortrup, Hinrich Abken, Yi Sun, Sine Reker Hadrup","doi":"10.1038/s41467-025-67868-1","DOIUrl":"https://doi.org/10.1038/s41467-025-67868-1","url":null,"abstract":"<p><p>Adoptive T cell therapy using chimeric antigen receptor (CAR) engineered T cells is currently being explored in multiple cancer types beyond leukemia/lymphoma. A key step in CAR-T cell manufacturing is the activation and expansion of T cells, which facilitates viral transduction, however, may hamper T cell fitness and reduce in vivo persistence. \"T-Expand\" is developed for T cell activation and expansion, comprising dextran-based nanoparticles conjugated with anti-CD3 and anti-CD28 antibodies. The nanoparticles trigger robust polyclonal expansion of human T cells with efficiency in the range of commercial microbeads (Dynabeads™). Engineered in the presence of T-Expand, CD19 CAR T cells display enhanced proliferative capacity, cytotoxicity and persistence in vitro, and furthermore, exhibit potent anti-lymphoma activity in mouse models, resulting in complete tumor clearance at one fourth of the CAR T cell dose. Importantly, T-Expand is biocompatible with no observed toxicity, circumventing removal steps after T cell expansion compared to Dynabeads<sup>TM</sup>. As a biocompatible T cell expansion platform, T-Expand simplifies the manufacturing process while enhancing T cell persistence and functionality, and thereby holds promise for increasing clinical efficacy of CAR T cell therapy.</p>","PeriodicalId":19066,"journal":{"name":"Nature Communications","volume":" ","pages":""},"PeriodicalIF":15.7,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146011357","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Quantum metrology has emerged as a powerful tool for timekeeping, field sensing, and precision measurements in fundamental physics. With the advent of distributed quantum metrology, its capabilities have extended to probing spatially distributed parameters across networked quantum systems. However, scalable implementations of distributed quantum metrology with multiparameter estimation remain limited, particularly due to the challenges of generating and distributing entanglement across a quantum network and dealing with incompatibilities in multiparameter quantum metrology. Here we demonstrate distributed multiparameter quantum metrology on a modular superconducting quantum network with low-loss microwave interconnects, a platform that uniquely combines fast gate operations, adaptive control, and deterministic non-local entanglement generation. Using a control-enhanced sequential protocol, we estimate all three components of a remote vector field, achieving up to 13.72 dB improvement in precision over the individual strategy. We further perform direct estimation of vector field gradients along two directions across spatially separated nodes, realizing a 3.44 dB gain over local entanglement strategies. These results establish superconducting quantum networks as a competitive and reconfigurable platform for scalable multiparameter distributed quantum metrology.
{"title":"Distributed multi-parameter quantum metrology with a superconducting quantum network.","authors":"Jiajian Zhang, Lingna Wang, Yong-Ju Hai, Jiawei Zhang, Ji Chu, Ji Jiang, Wenhui Huang, Yongqi Liang, Jiawei Qiu, Xuandong Sun, Ziyu Tao, Libo Zhang, Yuxuan Zhou, Yuanzhen Chen, Weijie Guo, Xiayu Linpeng, Song Liu, Wenhui Ren, Youpeng Zhong, Jingjing Niu, Haidong Yuan, Dapeng Yu","doi":"10.1038/s41467-026-68535-9","DOIUrl":"https://doi.org/10.1038/s41467-026-68535-9","url":null,"abstract":"<p><p>Quantum metrology has emerged as a powerful tool for timekeeping, field sensing, and precision measurements in fundamental physics. With the advent of distributed quantum metrology, its capabilities have extended to probing spatially distributed parameters across networked quantum systems. However, scalable implementations of distributed quantum metrology with multiparameter estimation remain limited, particularly due to the challenges of generating and distributing entanglement across a quantum network and dealing with incompatibilities in multiparameter quantum metrology. Here we demonstrate distributed multiparameter quantum metrology on a modular superconducting quantum network with low-loss microwave interconnects, a platform that uniquely combines fast gate operations, adaptive control, and deterministic non-local entanglement generation. Using a control-enhanced sequential protocol, we estimate all three components of a remote vector field, achieving up to 13.72 dB improvement in precision over the individual strategy. We further perform direct estimation of vector field gradients along two directions across spatially separated nodes, realizing a 3.44 dB gain over local entanglement strategies. These results establish superconducting quantum networks as a competitive and reconfigurable platform for scalable multiparameter distributed quantum metrology.</p>","PeriodicalId":19066,"journal":{"name":"Nature Communications","volume":" ","pages":""},"PeriodicalIF":15.7,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146011369","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}