Controlling protein solubility is critical yet challenging for food and pharmaceutical applications. This review dissects the molecular and environmental determinants governing solubility behavior. It integrates traditional modification strategies with emerging artificial intelligence-driven approaches, emphasizing the transition from empirical trial-and-error to data-driven rational design. This work provides a systematic framework to advance protein engineering solutions across diverse industrial sectors.
{"title":"Strategies for enhancing protein solubility: methods, applications, and prospects.","authors":"Ruiqi Cao, Weihao Wang, Zhiyan Zhang, Chuan Wang, Qingjing Huang, Lixiu Yan, Jiamin Zhang, Jie Cheng","doi":"10.1038/s41538-026-00743-5","DOIUrl":"https://doi.org/10.1038/s41538-026-00743-5","url":null,"abstract":"<p><p>Controlling protein solubility is critical yet challenging for food and pharmaceutical applications. This review dissects the molecular and environmental determinants governing solubility behavior. It integrates traditional modification strategies with emerging artificial intelligence-driven approaches, emphasizing the transition from empirical trial-and-error to data-driven rational design. This work provides a systematic framework to advance protein engineering solutions across diverse industrial sectors.</p>","PeriodicalId":19367,"journal":{"name":"NPJ Science of Food","volume":" ","pages":""},"PeriodicalIF":7.8,"publicationDate":"2026-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146125232","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-05DOI: 10.1038/s41538-026-00731-9
Yuxuan Xie, Jun Wu, Dan Zhang, Cai Zhao, Jihua Yu, Yuan Zhong
This study examined the growth-stage-dependent metabolic variations in tatsoi microgreens (TM) and baby greens (TBG) through the application of flavoromics, metabolomics, and network pharmacology. The HS-SPME-GC/MS analysis identified 526 volatile organic compounds, with TM predominantly exhibiting green, cucumber, melon, and nutty aromas, whereas TBG developed more complex fruity, floral, and creamy notes attributed to esters and ketones. The UPLC-QqQ-MS analysis detected 1475 non-volatile metabolites, revealing that TBG had elevated levels of phenolic acids, lignans, coumarins, and specific glucosinolates, while TM contained higher concentrations of flavonoids. Network pharmacology analysis identified 113 metabolites with potential multi-target mechanisms effective against metabolic disorders, such as obesity, type 2 diabetes mellitus, and non-alcoholic fatty liver disease, as well as cardiovascular diseases, including hypertension, atherosclerosis, and myocardial infarction. This comprehensive approach underscores the potential of tatsoi, particularly at various growth stages, as a valuable source of flavor compounds and bioactive ingredients for functional foods.
{"title":"Integrated foodomics and network pharmacology reveal functional food potential in tatsoi microgreens and baby greens.","authors":"Yuxuan Xie, Jun Wu, Dan Zhang, Cai Zhao, Jihua Yu, Yuan Zhong","doi":"10.1038/s41538-026-00731-9","DOIUrl":"https://doi.org/10.1038/s41538-026-00731-9","url":null,"abstract":"<p><p>This study examined the growth-stage-dependent metabolic variations in tatsoi microgreens (TM) and baby greens (TBG) through the application of flavoromics, metabolomics, and network pharmacology. The HS-SPME-GC/MS analysis identified 526 volatile organic compounds, with TM predominantly exhibiting green, cucumber, melon, and nutty aromas, whereas TBG developed more complex fruity, floral, and creamy notes attributed to esters and ketones. The UPLC-QqQ-MS analysis detected 1475 non-volatile metabolites, revealing that TBG had elevated levels of phenolic acids, lignans, coumarins, and specific glucosinolates, while TM contained higher concentrations of flavonoids. Network pharmacology analysis identified 113 metabolites with potential multi-target mechanisms effective against metabolic disorders, such as obesity, type 2 diabetes mellitus, and non-alcoholic fatty liver disease, as well as cardiovascular diseases, including hypertension, atherosclerosis, and myocardial infarction. This comprehensive approach underscores the potential of tatsoi, particularly at various growth stages, as a valuable source of flavor compounds and bioactive ingredients for functional foods.</p>","PeriodicalId":19367,"journal":{"name":"NPJ Science of Food","volume":" ","pages":""},"PeriodicalIF":7.8,"publicationDate":"2026-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146126028","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-04DOI: 10.1038/s41538-026-00729-3
Qiangbao Xu, Qiuyue Lv, Zhu Yang, Yiping Yang, Zihan Li, Yingying Zhang, Lingzhi Chen, Sumiao Zhan, Hui Che, Guodong Wang, Jiangping Wu, Jun Han
Ulcerative colitis (UC) is a chronic inflammatory bowel disease with persistent colonic inflammation and inadequate therapeutic options. The medicinal and edible plant Polygonatum cyrtonema Hua from Jiuhua Mountain contains polysaccharides with potent anti-inflammatory activities. In this study, a low-molecular-weight fructan (Mw = 2087 Da), designated PCP2, was isolated and purified from its rhizome. Biologically, PCP2 administration markedly alleviated disease severity in dextran sulfate sodium (DSS)-induced colitis mice, as shown by the improvement in multiple indicators of colon injury and inflammation. Fecal microbiota transplantation and antibiotic depletion experiments revealed that the protective effects of PCP2 are mediated through both modulation of the gut microbiota and additional microbiota-independent pathways. Importantly, through molecular dynamics simulations, microscale thermophoresis, and surface plasmon resonance assays, follistatin (Fst) is identified as a direct binding target of PCP2. Functional validation using siRNA-mediated Fst knockdown in Caco-2 cells, combined with adenovirus-mediated knockdown in the murine colon, confirmed that PCP2 exerts its therapeutic effect by directly interacting with Fst and suppressing the BMP4/Smad1/ID1 signaling axis. In summary, PCP2 ameliorates ulcerative colitis via dual mechanisms involving restoration of gut microbiota homeostasis and direct targeting of Fst. These findings establish a novel therapeutic strategy and support the clinical development of P. cyrtonema Hua from Jiuhua Mountain as a functional food for intestinal health.
{"title":"Polygonatum cyrtonema Hua fructan ameliorates ulcerative colitis via gut microbiota modulation and follistatin targeting.","authors":"Qiangbao Xu, Qiuyue Lv, Zhu Yang, Yiping Yang, Zihan Li, Yingying Zhang, Lingzhi Chen, Sumiao Zhan, Hui Che, Guodong Wang, Jiangping Wu, Jun Han","doi":"10.1038/s41538-026-00729-3","DOIUrl":"https://doi.org/10.1038/s41538-026-00729-3","url":null,"abstract":"<p><p>Ulcerative colitis (UC) is a chronic inflammatory bowel disease with persistent colonic inflammation and inadequate therapeutic options. The medicinal and edible plant Polygonatum cyrtonema Hua from Jiuhua Mountain contains polysaccharides with potent anti-inflammatory activities. In this study, a low-molecular-weight fructan (Mw = 2087 Da), designated PCP2, was isolated and purified from its rhizome. Biologically, PCP2 administration markedly alleviated disease severity in dextran sulfate sodium (DSS)-induced colitis mice, as shown by the improvement in multiple indicators of colon injury and inflammation. Fecal microbiota transplantation and antibiotic depletion experiments revealed that the protective effects of PCP2 are mediated through both modulation of the gut microbiota and additional microbiota-independent pathways. Importantly, through molecular dynamics simulations, microscale thermophoresis, and surface plasmon resonance assays, follistatin (Fst) is identified as a direct binding target of PCP2. Functional validation using siRNA-mediated Fst knockdown in Caco-2 cells, combined with adenovirus-mediated knockdown in the murine colon, confirmed that PCP2 exerts its therapeutic effect by directly interacting with Fst and suppressing the BMP4/Smad1/ID1 signaling axis. In summary, PCP2 ameliorates ulcerative colitis via dual mechanisms involving restoration of gut microbiota homeostasis and direct targeting of Fst. These findings establish a novel therapeutic strategy and support the clinical development of P. cyrtonema Hua from Jiuhua Mountain as a functional food for intestinal health.</p>","PeriodicalId":19367,"journal":{"name":"NPJ Science of Food","volume":" ","pages":""},"PeriodicalIF":7.8,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146119593","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mutton is valued for its rich nutritional content and distinctive flavor. Cyanidin 3-O-galactoside (C3Gal), a natural anthocyanin, exhibits multiple biological activities and benefits production animals. This study systematically evaluated the effects of dietary C3Gal supplementation on growth performance, meat quality, flavor, and health attributes in Small-Tailed Han sheep. Conventional meat quality analyses were integrated with electronic nose technology, transcriptomics, and untargeted metabolomics to elucidate the mechanisms underlying C3Gal-mediated improvements. C3Gal significantly increased intramuscular fat content, improved meat color and muscle structure, and enhanced tenderness and juiciness, while optimizing the composition of volatile flavor compounds and overall flavor profiles. Multi-omics analyses revealed that C3Gal promoted the accumulation of beneficial fatty acids and optimized fatty acid composition through regulation of the peroxisome proliferator-activated receptor (PPAR) signaling pathway and fatty acid biosynthesis pathways, thereby enhancing health attributes. These findings provide mechanistic evidence supporting C3Gal as a natural feed additive derived from crabapple by-products.
羊肉因其丰富的营养成分和独特的风味而受到重视。花青素3- o -半乳糖苷(C3Gal)是一种天然花青素,具有多种生物活性,对生产动物有益。本研究系统评价了饲粮中添加C3Gal对小尾寒羊生长性能、肉质、风味和健康属性的影响。传统的肉质分析与电子鼻技术、转录组学和非靶向代谢组学相结合,以阐明c3gal介导的肉质改善的机制。C3Gal显著提高了肌内脂肪含量,改善了肉色和肌肉结构,增强了嫩度和多汁性,同时优化了挥发性风味化合物的组成和整体风味特征。多组学分析显示,C3Gal通过调控过氧化物酶体增殖物激活受体(PPAR)信号通路和脂肪酸生物合成途径,促进有益脂肪酸的积累,优化脂肪酸组成,从而增强健康属性。这些发现为支持C3Gal作为海棠副产品的天然饲料添加剂提供了机理证据。
{"title":"Cyanidin-3-O-galactoside improves meat quality, flavor and health attributes in small-tailed han lambs.","authors":"Hao Yang, Jieqiong Cai, Junjian Yu, Rui Feng, Weibin Wu, Sanjun Jin, Jiayi Chen","doi":"10.1038/s41538-026-00734-6","DOIUrl":"https://doi.org/10.1038/s41538-026-00734-6","url":null,"abstract":"<p><p>Mutton is valued for its rich nutritional content and distinctive flavor. Cyanidin 3-O-galactoside (C3Gal), a natural anthocyanin, exhibits multiple biological activities and benefits production animals. This study systematically evaluated the effects of dietary C3Gal supplementation on growth performance, meat quality, flavor, and health attributes in Small-Tailed Han sheep. Conventional meat quality analyses were integrated with electronic nose technology, transcriptomics, and untargeted metabolomics to elucidate the mechanisms underlying C3Gal-mediated improvements. C3Gal significantly increased intramuscular fat content, improved meat color and muscle structure, and enhanced tenderness and juiciness, while optimizing the composition of volatile flavor compounds and overall flavor profiles. Multi-omics analyses revealed that C3Gal promoted the accumulation of beneficial fatty acids and optimized fatty acid composition through regulation of the peroxisome proliferator-activated receptor (PPAR) signaling pathway and fatty acid biosynthesis pathways, thereby enhancing health attributes. These findings provide mechanistic evidence supporting C3Gal as a natural feed additive derived from crabapple by-products.</p>","PeriodicalId":19367,"journal":{"name":"NPJ Science of Food","volume":" ","pages":""},"PeriodicalIF":7.8,"publicationDate":"2026-02-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146106383","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-02DOI: 10.1038/s41538-026-00735-5
J Mauricio Peñarrieta, Erick Loayza, Javier A Linares-Pastén
Quinoa is globally recognised for its nutritional value, and its production has recently expanded worldwide. However, Quinoa Real (Royal Quinoa), a landrace group grown exclusively in the Intersalar zone of Bolivia, stands out for its grain quality and adaptation to extreme environments, such as high altitude, high salinity, intense UV radiation, aridity, and temperature fluctuations. This study compares the nutritional composition of 13 well-established commercial quinoa samples from 9 countries, including Quinoa Real white, red, and black. Analyses covered granulometry, proximate composition, fatty acid and amino acid profiles, vitamins, and minerals. Multivariate analyses (PCA and nMDS) revealed clear compositional distinctions for Quinoa Real, including higher levels of dietary fibre, ash, phytosterols, and essential minerals. It also exhibits a more favourable fatty-acid profile, higher levels of several vitamins, and a well-balanced essential amino acid profile. These results show that Quinoa Real is not only a nutritional outlier but also a valuable agrobiodiversity resource with implications for food security, functional foods, and sustainable production in the face of global dietary and environmental challenges.
{"title":"Nutritional distinction of Bolivian Quinoa Real compared to global varieties.","authors":"J Mauricio Peñarrieta, Erick Loayza, Javier A Linares-Pastén","doi":"10.1038/s41538-026-00735-5","DOIUrl":"https://doi.org/10.1038/s41538-026-00735-5","url":null,"abstract":"<p><p>Quinoa is globally recognised for its nutritional value, and its production has recently expanded worldwide. However, Quinoa Real (Royal Quinoa), a landrace group grown exclusively in the Intersalar zone of Bolivia, stands out for its grain quality and adaptation to extreme environments, such as high altitude, high salinity, intense UV radiation, aridity, and temperature fluctuations. This study compares the nutritional composition of 13 well-established commercial quinoa samples from 9 countries, including Quinoa Real white, red, and black. Analyses covered granulometry, proximate composition, fatty acid and amino acid profiles, vitamins, and minerals. Multivariate analyses (PCA and nMDS) revealed clear compositional distinctions for Quinoa Real, including higher levels of dietary fibre, ash, phytosterols, and essential minerals. It also exhibits a more favourable fatty-acid profile, higher levels of several vitamins, and a well-balanced essential amino acid profile. These results show that Quinoa Real is not only a nutritional outlier but also a valuable agrobiodiversity resource with implications for food security, functional foods, and sustainable production in the face of global dietary and environmental challenges.</p>","PeriodicalId":19367,"journal":{"name":"NPJ Science of Food","volume":" ","pages":""},"PeriodicalIF":7.8,"publicationDate":"2026-02-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146106493","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-02DOI: 10.1038/s41538-026-00737-3
Jingyi Xu, Mingji Xie, Xinyao Yang, Chuhan Zhang, Mingjia Li, Peida Luo, Jinlin Bian, Lei Guo, Yao Zou, Bo Sun, Qian Tang
Mengding Bud Yellow Tea (MDBYT) is distinguished by its characteristic sweet and umami aroma. This study integrated quantitative descriptive analysis, HS-SPME-GC-MS, and UPLC-QQQ-MS to systematically elucidate, for the first time, the dynamic evolution of MDBYT aroma and its formation mechanisms. Sensory evaluation revealed that, among the 13 aroma descriptors, sweetness, umami, and mellowness were the primary attributes positively correlated with overall aroma quality. The yellowing process was the pivotal stage driving the aroma transition from grassy to sweet and umami notes. A total of 38 differential metabolites were identified, of which β-ionone, linalool, n-pentanal, n-heptanal, n-octanal, and 1-octen-3-ol, emerged as key contributors. These metabolites were primarily involved in modulating the sweetness, umami, and mellowness attributes of MDBYT. Quantitative profiling of 10 classes of GBVs demonstrated significant accumulation of linalyl and geranyl glycosides during the fixing and yellowing stages, providing strong evidence that glycoside hydrolysis constitutes a major release pathway for aroma-active compounds. Collectively, these findings demonstrate that the unique aroma of MDBYT is established through a coordinated, processing-driven biochemical network involving carotenoid degradation, glycoside hydrolysis, and lipid oxidation. This study provides a robust scientific foundation for the targeted regulation of flavor quality and the optimization of yellow tea processing strategies.
{"title":"Key sweet-aroma compounds and formation mechanisms in Mengding bud yellow tea using HS-SPME-GC-MS and sensomics.","authors":"Jingyi Xu, Mingji Xie, Xinyao Yang, Chuhan Zhang, Mingjia Li, Peida Luo, Jinlin Bian, Lei Guo, Yao Zou, Bo Sun, Qian Tang","doi":"10.1038/s41538-026-00737-3","DOIUrl":"https://doi.org/10.1038/s41538-026-00737-3","url":null,"abstract":"<p><p>Mengding Bud Yellow Tea (MDBYT) is distinguished by its characteristic sweet and umami aroma. This study integrated quantitative descriptive analysis, HS-SPME-GC-MS, and UPLC-QQQ-MS to systematically elucidate, for the first time, the dynamic evolution of MDBYT aroma and its formation mechanisms. Sensory evaluation revealed that, among the 13 aroma descriptors, sweetness, umami, and mellowness were the primary attributes positively correlated with overall aroma quality. The yellowing process was the pivotal stage driving the aroma transition from grassy to sweet and umami notes. A total of 38 differential metabolites were identified, of which β-ionone, linalool, n-pentanal, n-heptanal, n-octanal, and 1-octen-3-ol, emerged as key contributors. These metabolites were primarily involved in modulating the sweetness, umami, and mellowness attributes of MDBYT. Quantitative profiling of 10 classes of GBVs demonstrated significant accumulation of linalyl and geranyl glycosides during the fixing and yellowing stages, providing strong evidence that glycoside hydrolysis constitutes a major release pathway for aroma-active compounds. Collectively, these findings demonstrate that the unique aroma of MDBYT is established through a coordinated, processing-driven biochemical network involving carotenoid degradation, glycoside hydrolysis, and lipid oxidation. This study provides a robust scientific foundation for the targeted regulation of flavor quality and the optimization of yellow tea processing strategies.</p>","PeriodicalId":19367,"journal":{"name":"NPJ Science of Food","volume":" ","pages":""},"PeriodicalIF":7.8,"publicationDate":"2026-02-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146106367","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Cultured meat represents a promising sustainable food source, yet the development of efficient serum-free media remains a key bottleneck. Small molecules offer a cost-effective approach to system optimization. Through a functional screening of proliferation activators in bovine muscle stem cells (bMuSCs), we identified forskolin and formulated the serum-free "Beefy-F" medium. Over six passages, Beefy-F yielded 1.9 times more bMuSCs than the basal serum-free control (Beefy-9), matching serum-controlled levels while maintaining bMuSC morphology, myogenic gene expression, and differentiation potential. Subsequent synergistic screening revealed that the p38 inhibitor SB202190 enhanced forskolin's effects. The optimized "Beefy-F + S" medium significantly outperformed both the basal serum-free control and single-supplemented formulations after three passages, upregulated the stemness marker PAX7, and preserved differentiation capacity. Transcriptomic analysis revealed that the Beefy-F + S medium broadly altered the bMuSC transcriptome to maintain myogenic identity, upregulate cell cycle genes, and reshape extracellular matrix (ECM) pathways, with forskolin sustaining myogenic factors and the p38 inhibitor promoting proliferation and modulating ECM interactions. Overall, this study establishes a cost-effective, small molecule-based strategy for the robust serum-free expansion of bMuSCs.
{"title":"A small molecule strategy with forskolin and p38 inhibitor for serum-free muscle stem cell expansion.","authors":"Hao Lu, Zheng Liu, Xiaoyu Liu, Yijia Pan, Dan Yan, Xinpei Cheng, Longfei Zhang, Shijie Ding, Chunbao Li, Guanghong Zhou, Renpeng Guo","doi":"10.1038/s41538-026-00732-8","DOIUrl":"https://doi.org/10.1038/s41538-026-00732-8","url":null,"abstract":"<p><p>Cultured meat represents a promising sustainable food source, yet the development of efficient serum-free media remains a key bottleneck. Small molecules offer a cost-effective approach to system optimization. Through a functional screening of proliferation activators in bovine muscle stem cells (bMuSCs), we identified forskolin and formulated the serum-free \"Beefy-F\" medium. Over six passages, Beefy-F yielded 1.9 times more bMuSCs than the basal serum-free control (Beefy-9), matching serum-controlled levels while maintaining bMuSC morphology, myogenic gene expression, and differentiation potential. Subsequent synergistic screening revealed that the p38 inhibitor SB202190 enhanced forskolin's effects. The optimized \"Beefy-F + S\" medium significantly outperformed both the basal serum-free control and single-supplemented formulations after three passages, upregulated the stemness marker PAX7, and preserved differentiation capacity. Transcriptomic analysis revealed that the Beefy-F + S medium broadly altered the bMuSC transcriptome to maintain myogenic identity, upregulate cell cycle genes, and reshape extracellular matrix (ECM) pathways, with forskolin sustaining myogenic factors and the p38 inhibitor promoting proliferation and modulating ECM interactions. Overall, this study establishes a cost-effective, small molecule-based strategy for the robust serum-free expansion of bMuSCs.</p>","PeriodicalId":19367,"journal":{"name":"NPJ Science of Food","volume":" ","pages":""},"PeriodicalIF":7.8,"publicationDate":"2026-02-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146106369","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-02DOI: 10.1038/s41538-026-00728-4
Han Wang, Haosong Li, Dexin Zeng, Yansong Li, Xiaofeng Yu, Chunyi Shangguan, Xilin Liu, Xi Yang, Honglin Ren, Pan Hu, Qiang Lu, Shiying Lu
Conventional detection methods for Listeria monocytogenes suffer from limitations including lengthy procedures, equipment dependency, and operational complexity, making them unsuitable for rapid on-site detection. Therefore, this study developed an LM-RPA-Cas12a-LFA detection method. Target bacteria were enriched using aptamer magnetic beads, followed by RPA amplification of a 196 bp fragment of the hly gene to activate the Cas12a system, with results displayed on lateral flow strips. The method including bacterial enrichment, DNA extraction, LM-RPA-Cas12a-LFA procedure required 2 h with detection limit of 1 × 10-10 ng/µL and 1.35 CFU/mL in complex food matrices, demonstrating excellent reproducibility and stability. Detection of 16 real food samples showed complete concordance with qPCR validation, accurately identifying 4 positive and 12 negative samples. This method provides a reliable, rapid, and sensitive tool for on-site qualitative detection of Listeria monocytogenes.
{"title":"Listeria monocytogenes detection assay via aptamer-functionalized magnetic bead enrichment coupled with RPA-CRISPR/Cas12a lateral flow strips.","authors":"Han Wang, Haosong Li, Dexin Zeng, Yansong Li, Xiaofeng Yu, Chunyi Shangguan, Xilin Liu, Xi Yang, Honglin Ren, Pan Hu, Qiang Lu, Shiying Lu","doi":"10.1038/s41538-026-00728-4","DOIUrl":"https://doi.org/10.1038/s41538-026-00728-4","url":null,"abstract":"<p><p>Conventional detection methods for Listeria monocytogenes suffer from limitations including lengthy procedures, equipment dependency, and operational complexity, making them unsuitable for rapid on-site detection. Therefore, this study developed an LM-RPA-Cas12a-LFA detection method. Target bacteria were enriched using aptamer magnetic beads, followed by RPA amplification of a 196 bp fragment of the hly gene to activate the Cas12a system, with results displayed on lateral flow strips. The method including bacterial enrichment, DNA extraction, LM-RPA-Cas12a-LFA procedure required 2 h with detection limit of 1 × 10<sup>-10</sup> ng/µL and 1.35 CFU/mL in complex food matrices, demonstrating excellent reproducibility and stability. Detection of 16 real food samples showed complete concordance with qPCR validation, accurately identifying 4 positive and 12 negative samples. This method provides a reliable, rapid, and sensitive tool for on-site qualitative detection of Listeria monocytogenes.</p>","PeriodicalId":19367,"journal":{"name":"NPJ Science of Food","volume":" ","pages":""},"PeriodicalIF":7.8,"publicationDate":"2026-02-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146106480","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-30DOI: 10.1038/s41538-025-00644-z
Wenwen Yang, Zhixian Bao, Yuhua Chen, Jie Gao, Rui Ji
Cholelithiasis affects 10-20% of adults globally, and while cheese consumption may influence risk, underlying biological pathways remain unclear. In this prospective cohort study of 399,467 UK Biobank participants without prior cholelithiasis, we examined cheese intake frequency (never to ≥1/day) via baseline food-frequency questionnaires and identified incident cholelithiasis through hospital records, primary care data, and self-reports. Multivariable COX regression and causal mediation analyses assessed risk associations and mediation by cholesterol subtypes. Over follow-up, 15,897 participants developed cholelithiasis. Higher cheese intake showed a dose-dependent inverse association, with daily consumers having 26.3% lower odds (adjusted OR = 0.737, 95% CI: 0.653-0.832) versus non-consumers. HDL-C significantly mediated this association (proportion mediated: 4.03-6.98%). Frequent cheese consumption was associated with significantly lower cholelithiasis risk, partially mediated by HDL-C, suggesting a potential dietary strategy for prevention, though residual confounding and mechanisms require further investigation.
{"title":"Cheese consumption and lower cholelithiasis risk a prospective UK biobank study with HDL-C mediation.","authors":"Wenwen Yang, Zhixian Bao, Yuhua Chen, Jie Gao, Rui Ji","doi":"10.1038/s41538-025-00644-z","DOIUrl":"10.1038/s41538-025-00644-z","url":null,"abstract":"<p><p>Cholelithiasis affects 10-20% of adults globally, and while cheese consumption may influence risk, underlying biological pathways remain unclear. In this prospective cohort study of 399,467 UK Biobank participants without prior cholelithiasis, we examined cheese intake frequency (never to ≥1/day) via baseline food-frequency questionnaires and identified incident cholelithiasis through hospital records, primary care data, and self-reports. Multivariable COX regression and causal mediation analyses assessed risk associations and mediation by cholesterol subtypes. Over follow-up, 15,897 participants developed cholelithiasis. Higher cheese intake showed a dose-dependent inverse association, with daily consumers having 26.3% lower odds (adjusted OR = 0.737, 95% CI: 0.653-0.832) versus non-consumers. HDL-C significantly mediated this association (proportion mediated: 4.03-6.98%). Frequent cheese consumption was associated with significantly lower cholelithiasis risk, partially mediated by HDL-C, suggesting a potential dietary strategy for prevention, though residual confounding and mechanisms require further investigation.</p>","PeriodicalId":19367,"journal":{"name":"NPJ Science of Food","volume":" ","pages":"28"},"PeriodicalIF":7.8,"publicationDate":"2026-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12864970/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146093534","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-30DOI: 10.1038/s41538-026-00733-7
Xiaorong Tian, Zengfeng Zhang, Wanwan Hou, Jiahui Li, Shimo Kang, Zifeng Mai, Nan Zhong, Lu Lu, Chunlei Shi
Staphylococcus aureus can contaminate food products and persist in food-related environments, posing significant challenges to food safety and public health. However, the role of plasmids in mediating antimicrobial resistance (AMR) and facilitating host adaptation in S. aureus has been largely underestimated. We conducted a global plasmidome analysis of 1395 isolates (human: 88.2%, animal: 11.8%) spanning 90 years. Plasmids were detected in 66.8% of strains, typically one to two per genome. We identified 35 distinct plasmid-borne antimicrobial resistance genes (ARGs), with a significant temporal increase in their abundance. Over 85.5% of these plasmids were predicted to be mobilizable, indicating a high transmission potential. Notably, clonal complex 5 (CC5) carried the highest plasmid burden, particularly subclade CC5.6, which exhibited high prevalence of conjugative pSK41 plasmids and ARGs. Although this lineage has not been reported elsewhere, its emergence raises concerns about ARG dissemination through conjugative plasmids. These findings emphasize the role of plasmids in the global spread of AMR and have important implications for food safety and resistance control strategies in food production.
{"title":"Plasmidomic landscape of Staphylococcus aureus and the emergence of a CC5 subclade harboring the conjugative plasmid pSK41: implications for food safety and antimicrobial resistance.","authors":"Xiaorong Tian, Zengfeng Zhang, Wanwan Hou, Jiahui Li, Shimo Kang, Zifeng Mai, Nan Zhong, Lu Lu, Chunlei Shi","doi":"10.1038/s41538-026-00733-7","DOIUrl":"https://doi.org/10.1038/s41538-026-00733-7","url":null,"abstract":"<p><p>Staphylococcus aureus can contaminate food products and persist in food-related environments, posing significant challenges to food safety and public health. However, the role of plasmids in mediating antimicrobial resistance (AMR) and facilitating host adaptation in S. aureus has been largely underestimated. We conducted a global plasmidome analysis of 1395 isolates (human: 88.2%, animal: 11.8%) spanning 90 years. Plasmids were detected in 66.8% of strains, typically one to two per genome. We identified 35 distinct plasmid-borne antimicrobial resistance genes (ARGs), with a significant temporal increase in their abundance. Over 85.5% of these plasmids were predicted to be mobilizable, indicating a high transmission potential. Notably, clonal complex 5 (CC5) carried the highest plasmid burden, particularly subclade CC5.6, which exhibited high prevalence of conjugative pSK41 plasmids and ARGs. Although this lineage has not been reported elsewhere, its emergence raises concerns about ARG dissemination through conjugative plasmids. These findings emphasize the role of plasmids in the global spread of AMR and have important implications for food safety and resistance control strategies in food production.</p>","PeriodicalId":19367,"journal":{"name":"NPJ Science of Food","volume":" ","pages":""},"PeriodicalIF":7.8,"publicationDate":"2026-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146093494","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}