首页 > 最新文献

Journal of Integrative Plant Biology最新文献

英文 中文
Assembly mechanism of PSII-LHCII array from higher plants 高等植物PSII-LHCII阵列的组装机理。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-15 DOI: 10.1111/jipb.70045
Jianghao Wu, Cang Wu, Shuaijiabin Chen, Chao Huang, Quan Wen, Weijun Lin, Chao Wang, Dexian Han, Dandan Lu, Xiumei Xu, Jun Gao, Sen-Fang Sui, Lixin Zhang

Photosystem II (PSII) comprises reaction centers and light-harvesting complexes of the major and minor antennas, forming diverse supercomplexes with varying antenna sizes and are organized as PSII arrays in grana thylakoids to respond to fluctuating light. However, the assembly mechanism of PSII arrays, excitation energy transfer and its regulation mechanisms in vascular plants remain poorly understood. Here, we report the cryo-electron microscopy structures of a 1.4-MDa PSII-LHCII (light-harvesting complex II) dimer and a 2.8-MDa tetramer, and present an initial model of hexamer from Arabidopsis. Structural and genetic analyses reveals that the tetramer is formed by two C2S2M2 dimers arranged side by side through interactions between CP26/PsbZ and moderate (M)-LHCII within PSII arrays in the grana thylakoid. Furthermore, conformational changes of M-LHCII and CP24 facilitate the assembly transition from dimer to tetramer/hexamer. Chlorophyll rearrangement, supported by computational calculations and spectral analysis, suggests enhanced energy transfer efficiency in the tetramer compared to the dimer. Therefore, our findings provide new insights into the dynamic assembly and excitation energy redistribution within PSII arrays in higher plants.

光系统II (PSII)由主要和次要天线的反应中心和光收集配合物组成,形成不同天线尺寸的超配合物,并在颗粒类囊体中组织成PSII阵列,以响应波动的光。然而,对PSII阵列的组装机制、激发能转移及其在维管植物中的调控机制仍知之甚少。在这里,我们报道了1.4 mda PSII-LHCII(光捕获复合物II)二聚体和2.8 mda四聚体的低温电镜结构,并提出了一个来自拟南芥的六聚体的初始模型。结构和遗传分析表明,该四聚体是由两个C2S2M2二聚体通过CP26/PsbZ与PSII阵列中的moderate (M)-LHCII相互作用并排排列而成的。此外,M-LHCII和CP24的构象变化促进了组装从二聚体到四聚体/六聚体的转变。计算计算和光谱分析支持叶绿素重排,表明与二聚体相比,四聚体的能量传递效率更高。因此,我们的研究结果为高等植物PSII阵列的动态组装和激励能量重新分配提供了新的见解。
{"title":"Assembly mechanism of PSII-LHCII array from higher plants","authors":"Jianghao Wu,&nbsp;Cang Wu,&nbsp;Shuaijiabin Chen,&nbsp;Chao Huang,&nbsp;Quan Wen,&nbsp;Weijun Lin,&nbsp;Chao Wang,&nbsp;Dexian Han,&nbsp;Dandan Lu,&nbsp;Xiumei Xu,&nbsp;Jun Gao,&nbsp;Sen-Fang Sui,&nbsp;Lixin Zhang","doi":"10.1111/jipb.70045","DOIUrl":"10.1111/jipb.70045","url":null,"abstract":"<div>\u0000 \u0000 <p>Photosystem II (PSII) comprises reaction centers and light-harvesting complexes of the major and minor antennas, forming diverse supercomplexes with varying antenna sizes and are organized as PSII arrays in grana thylakoids to respond to fluctuating light. However, the assembly mechanism of PSII arrays, excitation energy transfer and its regulation mechanisms in vascular plants remain poorly understood. Here, we report the cryo-electron microscopy structures of a 1.4-MDa PSII-LHCII (light-harvesting complex II) dimer and a 2.8-MDa tetramer, and present an initial model of hexamer from Arabidopsis. Structural and genetic analyses reveals that the tetramer is formed by two C<sub>2</sub>S<sub>2</sub>M<sub>2</sub> dimers arranged side by side through interactions between CP26/PsbZ and moderate (M)-LHCII within PSII arrays in the grana thylakoid. Furthermore, conformational changes of M-LHCII and CP24 facilitate the assembly transition from dimer to tetramer/hexamer. Chlorophyll rearrangement, supported by computational calculations and spectral analysis, suggests enhanced energy transfer efficiency in the tetramer compared to the dimer. Therefore, our findings provide new insights into the dynamic assembly and excitation energy redistribution within PSII arrays in higher plants.</p></div>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"67 12","pages":"3152-3166"},"PeriodicalIF":9.3,"publicationDate":"2025-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145290413","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Polar-localized EXO70G1 regulates root development in Arabidopsis thaliana 极地定位的EXO70G1调控拟南芥根系发育。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-15 DOI: 10.1111/jipb.70053
Juan Li, Zhendong Liu, Lixue Gong, Shuju Zhao, Qing Lu, Shan Gao, Su Jiang, Xiaonan Liu, Long Ma, Guangyou Duan, Dayong Cui, Shipeng Li

Cellular asymmetry, which represents a fundamental characteristic of cell polarity, is prominently illustrated by the apical-basal localization of PIN-FORMED (PIN) auxin efflux carriers in Arabidopsis thaliana. Although the maintenance of PIN polarity at the plasma membrane (PM) relies on endomembrane trafficking, the pivotal factors responsible for recruiting PIN proteins to the PM remain largely unknown. In this study, we discover that EXO70G1 displays a polarized distribution at the PM in root cells. Acting as a putative subunit of the exocyst complex, which mediates the tethering of exocytic vesicles to the PM, EXO70G1 exhibits continuous recycling foci at the PM, and its dynamic behavior is akin to that of SEC6 and SEC8. Disruption of EXO70G1 and its homolog EXO70G2 in Arabidopsis reduces auxin accumulation and primary root length. Importantly, the recycling of PIN2 from the brefeldin A (BFA) compartment to the PM is compromised, and the abundance of PIN2 at the PM is reduced in the exo70G1 exo70G2 backgrounds. Interestingly, live-cell imaging reveals that the polarity of EXO70G1 is established during cytokinesis, prior to that of PIN2, and is maintained throughout the subsequent phases of cell elongation and differentiation. When the lipid raft was disturbed, the accumulation of EXO70G1 at the PM decreased. Our findings highlight the crucial role of EXO70G1 in root development by providing positional cues that facilitate the recycling efficiency of PIN2 to the PM.

细胞不对称是细胞极性的一个基本特征,在拟南芥中PIN- formed (PIN)生长素外流载体的顶基定位中得到了突出的体现。尽管在质膜(PM)上PIN极性的维持依赖于膜内运输,但负责将PIN蛋白招募到PM的关键因素在很大程度上仍然未知。在本研究中,我们发现EXO70G1在根细胞的PM处呈现极化分布。EXO70G1被认为是胞囊复合物的亚基,介导胞囊囊与PM的黏附,在PM处表现出连续的循环焦点,其动态行为与SEC6和SEC8相似。在拟南芥中,破坏EXO70G1及其同源物EXO70G2会减少生长素的积累和初生根的长度。重要的是,从brefeldin A (BFA)室到PM的PIN2的再循环受到损害,并且在exo70G1和exo70G2背景下,PM处PIN2的丰度减少。有趣的是,活细胞成像显示,EXO70G1的极性在细胞质分裂期间建立,在PIN2之前,并在细胞延伸和分化的后续阶段保持。当脂筏受到干扰时,PM时EXO70G1的积累减少。我们的研究结果强调了EXO70G1在根发育中的关键作用,它提供了促进PIN2再循环效率的位置线索。
{"title":"Polar-localized EXO70G1 regulates root development in Arabidopsis thaliana","authors":"Juan Li,&nbsp;Zhendong Liu,&nbsp;Lixue Gong,&nbsp;Shuju Zhao,&nbsp;Qing Lu,&nbsp;Shan Gao,&nbsp;Su Jiang,&nbsp;Xiaonan Liu,&nbsp;Long Ma,&nbsp;Guangyou Duan,&nbsp;Dayong Cui,&nbsp;Shipeng Li","doi":"10.1111/jipb.70053","DOIUrl":"10.1111/jipb.70053","url":null,"abstract":"<p>Cellular asymmetry, which represents a fundamental characteristic of cell polarity, is prominently illustrated by the apical-basal localization of PIN-FORMED (PIN) auxin efflux carriers in <i>Arabidopsis thaliana</i>. Although the maintenance of PIN polarity at the plasma membrane (PM) relies on endomembrane trafficking, the pivotal factors responsible for recruiting PIN proteins to the PM remain largely unknown. In this study, we discover that EXO70G1 displays a polarized distribution at the PM in root cells. Acting as a putative subunit of the exocyst complex, which mediates the tethering of exocytic vesicles to the PM, EXO70G1 exhibits continuous recycling foci at the PM, and its dynamic behavior is akin to that of SEC6 and SEC8. Disruption of <i>EXO70G1</i> and its homolog <i>EXO70G2</i> in <i>Arabidopsis</i> reduces auxin accumulation and primary root length. Importantly, the recycling of PIN2 from the brefeldin A (BFA) compartment to the PM is compromised, and the abundance of PIN2 at the PM is reduced in the <i>exo70G1 exo70G2</i> backgrounds. Interestingly, live-cell imaging reveals that the polarity of EXO70G1 is established during cytokinesis, prior to that of PIN2, and is maintained throughout the subsequent phases of cell elongation and differentiation. When the lipid raft was disturbed, the accumulation of EXO70G1 at the PM decreased. Our findings highlight the crucial role of EXO70G1 in root development by providing positional cues that facilitate the recycling efficiency of PIN2 to the PM.</p>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"68 1","pages":"96-112"},"PeriodicalIF":9.3,"publicationDate":"2025-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.70053","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145290443","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Methylation of isopentenyl pyrophosphate by C-methyltransferase and optimizing irregular β-elemene yield using UniKP, an enzyme kinetic parameter prediction tool. c -甲基转移酶甲基化焦磷酸异戊烯基并利用酶动力学参数预测工具UniKP优化不规则β-榄香烯产率。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-13 DOI: 10.1111/jipb.70048
Tangli Li, Ming Wang, Huilin Ren, Han Yu, Xiaozhou Luo, Lifei Lv, Huanan Jin, Xiaopu Yin, Rong Chen

Although terpenoids display chemical and structural diversities as well as important biological activities, they are biosynthesized through polymerization of C5 isoprene units according to the "biogenetic isoprene rule." However, recent observations have identified irregular terpenes, such as C11, C12, C16, and C17, in some microbial species. These irregular terpenes have garnered research interest due to the "Magic Methyl Effect." These compounds are biosynthesized from the methyl modification of terpene skeletons at a detectable level in Escherichia coli. To explore key factors in the biosynthesis of irregular terpenes, we conducted a screening of C-methyltransferases by UniKP, synthesized methyl-isopentenyl pyrophosphate as a precursor building unit, and polymerized it with C5 isoprene units to generate methyl β-elemene via farnesyl pyrophosphate synthase and germacrene A synthase. Finally, the yield of methyl β-elemene reached 6.98 mg/L, representing a 2.46-fold increase, with a ratio of methylated to native β-elemene increasing by 0.21 through the introduction S-adenosyl-L-homocysteine hydrolase and the optimization of germacrene A synthase. These findings not only expand the chemical diversity of terpenoids but also highlight the evolutionary plasticity of terpene synthases in generating structural novelty.

虽然萜类化合物具有化学和结构的多样性以及重要的生物活性,但它们是根据“生物成因异戊二烯规则”通过C5异戊二烯单元聚合而成的。然而,最近的观察已经在一些微生物物种中发现了不规则萜烯,如C11、C12、C16和C17。由于“神奇甲基效应”,这些不规则萜烯引起了人们的研究兴趣。这些化合物是由大肠杆菌中可检测水平的萜烯骨架的甲基修饰生物合成的。为探索影响不规则萜类生物合成的关键因素,我们利用UniKP对c -甲基转移酶进行筛选,合成焦磷酸甲基异戊烯基作为前体构建单元,并通过焦磷酸法尼酯合成酶和焦磷酸格烯a合成酶与C5异戊二烯单元聚合生成甲基β-烯烯。最终,通过引入s -腺苷-L-同型半胱氨酸水解酶和优化germacrene a合成酶,甲基β-榄香烯的产率达到6.98 mg/L,提高了2.46倍,甲基化与天然β-榄香烯的比值提高了0.21。这些发现不仅扩大了萜类化合物的化学多样性,而且突出了萜类合成酶在产生结构新颖性方面的进化可塑性。
{"title":"Methylation of isopentenyl pyrophosphate by C-methyltransferase and optimizing irregular β-elemene yield using UniKP, an enzyme kinetic parameter prediction tool.","authors":"Tangli Li, Ming Wang, Huilin Ren, Han Yu, Xiaozhou Luo, Lifei Lv, Huanan Jin, Xiaopu Yin, Rong Chen","doi":"10.1111/jipb.70048","DOIUrl":"https://doi.org/10.1111/jipb.70048","url":null,"abstract":"<p><p>Although terpenoids display chemical and structural diversities as well as important biological activities, they are biosynthesized through polymerization of C5 isoprene units according to the \"biogenetic isoprene rule.\" However, recent observations have identified irregular terpenes, such as C11, C12, C16, and C17, in some microbial species. These irregular terpenes have garnered research interest due to the \"Magic Methyl Effect.\" These compounds are biosynthesized from the methyl modification of terpene skeletons at a detectable level in Escherichia coli. To explore key factors in the biosynthesis of irregular terpenes, we conducted a screening of C-methyltransferases by UniKP, synthesized methyl-isopentenyl pyrophosphate as a precursor building unit, and polymerized it with C5 isoprene units to generate methyl β-elemene via farnesyl pyrophosphate synthase and germacrene A synthase. Finally, the yield of methyl β-elemene reached 6.98 mg/L, representing a 2.46-fold increase, with a ratio of methylated to native β-elemene increasing by 0.21 through the introduction S-adenosyl-L-homocysteine hydrolase and the optimization of germacrene A synthase. These findings not only expand the chemical diversity of terpenoids but also highlight the evolutionary plasticity of terpene synthases in generating structural novelty.</p>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":" ","pages":""},"PeriodicalIF":9.3,"publicationDate":"2025-10-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145278578","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction to “The involvement of wheat U-box E3 ubiquitin ligase TaPUB1 in salt stress tolerance” 更正“小麦U-box E3泛素连接酶TaPUB1参与盐胁迫耐受性”。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-13 DOI: 10.1111/jipb.70034

Wang, W., Wang, W., Wu, Y., Li, Q., Zhang, G., Shi, R., Yang, J., Wang, Y., and Wang, W. (2020). The involvement of wheat U-box E3 ubiquitin ligase TaPUB1 in salt stress tolerance. J. Integr. Plant Biol. 62: 631–651. https://doi.org/10.1111/jipb.12842

In Figure 4B, the fluorescence images for TaPUB1-RNAi 5 were incorrect. The error occurred due to misplacement of images during assembly of the composite figure. The authors reviewed the original photographs and prepared corrected images. Both the original and revised versions of Figure 4B are shown below. The correction does not affect the description of the data, or conclusions drawn in the text.

We apologize for this error.

引用本文王伟,王伟,吴毅,李强,张刚,施如,杨军,王勇,王伟(2020)。小麦U-box E3泛素连接酶TaPUB1在盐胁迫耐受中的作用。j .中国。植物学报,32(2):631-651。https://doi.org/10.1111/jipb.12842In图4B, TaPUB1-RNAi 5的荧光图像不正确。在合成图的组装过程中,由于图像错位而发生错误。作者对原始照片进行了复核,并进行了校正。图4B的原始版本和修订版本如下所示。更正不影响对数据的描述,也不影响文中得出的结论。我们为这个错误道歉。
{"title":"Correction to “The involvement of wheat U-box E3 ubiquitin ligase TaPUB1 in salt stress tolerance”","authors":"","doi":"10.1111/jipb.70034","DOIUrl":"10.1111/jipb.70034","url":null,"abstract":"<p><b>Wang, W., Wang, W., Wu, Y., Li, Q., Zhang, G., Shi, R., Yang, J., Wang, Y., and Wang, W.</b> (2020). The involvement of wheat U-box E3 ubiquitin ligase TaPUB1 in salt stress tolerance. J. Integr. Plant Biol. <b>62:</b> 631–651. https://doi.org/10.1111/jipb.12842</p><p>In Figure 4B, the fluorescence images for TaPUB1-RNAi 5 were incorrect. The error occurred due to misplacement of images during assembly of the composite figure. The authors reviewed the original photographs and prepared corrected images. Both the original and revised versions of Figure 4B are shown below. The correction does not affect the description of the data, or conclusions drawn in the text.</p><p>We apologize for this error.</p>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"67 12","pages":""},"PeriodicalIF":9.3,"publicationDate":"2025-10-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.70034","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145278521","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Issue information page 发行信息页面
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-06 DOI: 10.1111/jipb.13702
{"title":"Issue information page","authors":"","doi":"10.1111/jipb.13702","DOIUrl":"https://doi.org/10.1111/jipb.13702","url":null,"abstract":"","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"67 10","pages":"2527-2528"},"PeriodicalIF":9.3,"publicationDate":"2025-10-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.13702","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145228199","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cover Image: 封面图片:
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-06 DOI: 10.1111/jipb.13703

Grapes have been a part of human civilization throughout our history. Cultivated grapes were domesticated from wild grapes and the cover illustrates the domestication process: wild grapes on the left contrast with cultivated grapes on the right, mitochondria symbolize the cytoplasmic component, a DNA double helix bridges genetic information exchange, and the nucleus within the grape fruits represents the nuclear genome. Together, these images highlight the continuous cytonuclear interactions that have shaped grape domestication. This cover features the study by Hou et al. (page: 2686–2703), who uncovered the potential role of cytoplasmic genomes in domestication, offering new insights into grape evolution and crop improvement.

纵观人类历史,葡萄一直是人类文明的一部分。栽培葡萄是由野生葡萄驯化而来的,封面说明了驯化过程:左边的野生葡萄与右边的栽培葡萄形成对比,线粒体象征着细胞质成分,DNA双螺旋桥接遗传信息交换,葡萄果实内的细胞核代表核基因组。总之,这些图像突出了连续的细胞核相互作用,形成了葡萄驯化。本封面刊登了侯等人的研究(页:2686€2703),他们发现了细胞质基因组在驯化中的潜在作用,为葡萄进化和作物改良提供了新的见解。
{"title":"Cover Image:","authors":"","doi":"10.1111/jipb.13703","DOIUrl":"https://doi.org/10.1111/jipb.13703","url":null,"abstract":"<p>Grapes have been a part of human civilization throughout our history. Cultivated grapes were domesticated from wild grapes and the cover illustrates the domestication process: wild grapes on the left contrast with cultivated grapes on the right, mitochondria symbolize the cytoplasmic component, a DNA double helix bridges genetic information exchange, and the nucleus within the grape fruits represents the nuclear genome. Together, these images highlight the continuous cytonuclear interactions that have shaped grape domestication. This cover features the study by Hou et al. (page: 2686–2703), who uncovered the potential role of cytoplasmic genomes in domestication, offering new insights into grape evolution and crop improvement.</p>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"67 10","pages":""},"PeriodicalIF":9.3,"publicationDate":"2025-10-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.13703","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145228198","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A GmNRF5a–GmCERK1–GmCAK1 module mediates chitin/chitosan-triggered immune response in soybean GmNRF5a-GmCERK1-GmCAK1模块介导大豆几丁质/壳聚糖引发的免疫反应。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-06 DOI: 10.1111/jipb.70042
Guangzheng Sun, Jun Chen, Tang Li, Qinsheng Zhu, Xinrui Li, Xuan Mi, Wenxia Wang, Zhichao Zhang, Keyi Huang, Ruoting Yao, Bo Yang, Wenwu Ye, Kaixuan Duan, Zhenchuan Ma, Ke Yu, Yiming Wang, Suomeng Dong, Yan Wang, Heng Yin, Yuanchao Wang

Chitin and its deacetylated derivative chitosan are the major components of fungal cell walls and are recognized by plant pattern-recognition receptors (PRRs) as pathogen-associated molecular patterns that induce innate immunity. Recognition of chitin oligosaccharide (CTOS) in Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa) requires the membrane-localized lysin-motif (LysM)-domain-containing receptors AtLYK5 and OsCEBiP, respectively. However, the mechanism underlying chitosan oligosaccharide (CSOS)-induced plant immunity remains unclear. In this study, we determined that CTOS and CSOS trigger immune responses and boost disease resistance in soybean (Glycine max) through the LysM-domain-containing protein GmNRF5a and its co-receptor GmCERK1. Surprisingly, both GmNFR5a and GmCERK1 bind directly to CTOS and CSOS, with distinct binding sites. The receptor-like kinase GmCAK1 acts downstream of GmCERK1 and is essential for CTOS/CSOS-mediated immune activation. Overall, these findings uncovered how soybean plants respond to CSOS and initiate immune signaling, demonstrating that soybean exploits shared immune sectors to transduce immune signals triggered by CTOS/CSOS, paving the way for the development of disease-resistant crops with broad-spectrum resistance.

几丁质及其去乙酰化衍生物壳聚糖是真菌细胞壁的主要成分,被植物模式识别受体(PRRs)识别为诱发先天免疫的病原体相关分子模式。拟南芥(Arabidopsis thaliana)和水稻(Oryza sativa)对几丁质寡糖(CTOS)的识别分别需要膜定位的lysin-motif (LysM)结构域受体AtLYK5和OsCEBiP。然而,壳寡糖(CSOS)诱导植物免疫的机制尚不清楚。在本研究中,我们确定CTOS和CSOS通过含有lysm结构域的蛋白GmNRF5a及其共受体GmCERK1触发免疫反应并增强大豆(Glycine max)的抗病能力。令人惊讶的是,GmNFR5a和GmCERK1都直接结合CTOS和CSOS,具有不同的结合位点。受体样激酶GmCAK1作用于GmCERK1的下游,是CTOS/ csos介导的免疫激活所必需的。总的来说,这些发现揭示了大豆植物如何响应CSOS并启动免疫信号,表明大豆利用共享免疫部门转导CTOS/CSOS触发的免疫信号,为开发具有广谱抗性的抗病作物铺平了道路。
{"title":"A GmNRF5a–GmCERK1–GmCAK1 module mediates chitin/chitosan-triggered immune response in soybean","authors":"Guangzheng Sun,&nbsp;Jun Chen,&nbsp;Tang Li,&nbsp;Qinsheng Zhu,&nbsp;Xinrui Li,&nbsp;Xuan Mi,&nbsp;Wenxia Wang,&nbsp;Zhichao Zhang,&nbsp;Keyi Huang,&nbsp;Ruoting Yao,&nbsp;Bo Yang,&nbsp;Wenwu Ye,&nbsp;Kaixuan Duan,&nbsp;Zhenchuan Ma,&nbsp;Ke Yu,&nbsp;Yiming Wang,&nbsp;Suomeng Dong,&nbsp;Yan Wang,&nbsp;Heng Yin,&nbsp;Yuanchao Wang","doi":"10.1111/jipb.70042","DOIUrl":"10.1111/jipb.70042","url":null,"abstract":"<p>Chitin and its deacetylated derivative chitosan are the major components of fungal cell walls and are recognized by plant pattern-recognition receptors (PRRs) as pathogen-associated molecular patterns that induce innate immunity. Recognition of chitin oligosaccharide (CTOS) in Arabidopsis (<i>Arabidopsis thaliana</i>) and rice (<i>Oryza sativa</i>) requires the membrane-localized lysin-motif (LysM)-domain-containing receptors AtLYK5 and OsCEBiP, respectively. However, the mechanism underlying chitosan oligosaccharide (CSOS)-induced plant immunity remains unclear. In this study, we determined that CTOS and CSOS trigger immune responses and boost disease resistance in soybean (<i>Glycine max</i>) through the LysM-domain-containing protein GmNRF5a and its co-receptor GmCERK1. Surprisingly, both GmNFR5a and GmCERK1 bind directly to CTOS and CSOS, with distinct binding sites. The receptor-like kinase GmCAK1 acts downstream of GmCERK1 and is essential for CTOS/CSOS-mediated immune activation. Overall, these findings uncovered how soybean plants respond to CSOS and initiate immune signaling, demonstrating that soybean exploits shared immune sectors to transduce immune signals triggered by CTOS/CSOS, paving the way for the development of disease-resistant crops with broad-spectrum resistance.</p>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"68 1","pages":"257-277"},"PeriodicalIF":9.3,"publicationDate":"2025-10-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.70042","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145231264","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Engineer the eukaryotic OMEGA-Fanzor systems for genome editing in plants. 设计真核OMEGA-Fanzor系统,用于植物基因组编辑。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-06 DOI: 10.1111/jipb.70049
Yuan Ji, Yan Sun, Hejie Zhou, Zimeng Liu, Ziran Sun, Gencheng Xu, Hongzhi Wen, Zerong Zheng, Lixiang Tu, Zitong Yang, Yuanyan Zhang, Xi Liu, Shirong Zhou, Xiaoou Dong, Yanpeng Wang, Chao Li, Jianmin Wan
{"title":"Engineer the eukaryotic OMEGA-Fanzor systems for genome editing in plants.","authors":"Yuan Ji, Yan Sun, Hejie Zhou, Zimeng Liu, Ziran Sun, Gencheng Xu, Hongzhi Wen, Zerong Zheng, Lixiang Tu, Zitong Yang, Yuanyan Zhang, Xi Liu, Shirong Zhou, Xiaoou Dong, Yanpeng Wang, Chao Li, Jianmin Wan","doi":"10.1111/jipb.70049","DOIUrl":"https://doi.org/10.1111/jipb.70049","url":null,"abstract":"","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":" ","pages":""},"PeriodicalIF":9.3,"publicationDate":"2025-10-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145231247","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Natural variations in MdBPM2/MdRGLG3-MdNAC83 network controlling the quantitative segregation of apple fruit storability 控制苹果果实贮藏性定量分离的MdBPM2/MdRGLG3-MdNAC83网络的自然变异
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-01 DOI: 10.1111/jipb.70044
Bei Wu, Fei Shen, Ziying Zhou, Wenhui Ren, Yi Wang, Ting Wu, Zhenhai Han, Xinzhong Zhang

Dissecting quantitative traits into Mendelian factors is a great challenge in genetics. Apple fruit storability is a complex trait controlled by multi-genes with unequal effects. We previously identified 62 quantitative trait loci (QTLs) associated with apple fruit storability and genomics-assisted prediction (GAP) models were trained using 56 QTL-based markers. Here, three candidate genes, MdNAC83, MdBPM2, and MdRGLG3, were screened from the regions of QTLs with large G’ value and large genetic effects. Both a 216-bp deletion and an SNP934 T/C at the promoter of MdNAC83 were associated with higher MdNAC83 expression but an SNP388 G/A at the coding region significantly reduced the activity to activate the expression of the target genes MdACO1, MdMANA3, and MdXTH28. MdBPM2 and MdRGLG3 participated in the ubiquitination of MdNAC83. SNP657 T/A of MdBPM2 and SNP167 C/G of MdRGLG3 caused a reduction in the activity to ubiquitinate MdNAC83. By the addition of functional markers to the GenoBaits SNP array, the prediction accuracy of the updated GAP models increased to 0.7723/0.6231 and 0.5639/0.5345 for flesh firmness/crispness at harvest and flesh firmness/crispness retainability, respectively. The variation network involving eight simple Mendelian variations in six genes helps to gain insight into the molecular quantitative genetics, to improve breeding strategy, and to provide targets for future genome editing.

在遗传学中,将数量性状分解为孟德尔因子是一个巨大的挑战。苹果果实的贮藏性是一种复杂的性状,受多基因控制,且作用不均衡。我们先前鉴定了62个与苹果果实贮藏性相关的数量性状位点(qtl),并使用56个基于qtl的标记训练了基因组学辅助预测(GAP)模型。本研究从具有较大G′值和较大遗传效应的qtl区域中筛选出3个候选基因MdNAC83、MdBPM2和MdRGLG3。MdNAC83启动子的216 bp缺失和SNP934 T/C均与MdNAC83的高表达相关,但编码区SNP388 G/ a显著降低了靶基因MdACO1、MdMANA3和MdXTH28的激活活性。MdBPM2和MdRGLG3参与了MdNAC83的泛素化。MdBPM2的SNP657 T/A和MdRGLG3的SNP167 C/G导致MdNAC83泛素化活性降低。通过在GenoBaits SNP序列中添加功能标记,更新后的GAP模型对收获时肉韧度/脆度和肉韧度/脆度保存性的预测精度分别提高到0.7723/0.6231和0.5639/0.5345。该变异网络涉及6个基因中的8个简单孟德尔变异,有助于深入了解分子定量遗传学,改进育种策略,并为未来的基因组编辑提供目标。
{"title":"Natural variations in MdBPM2/MdRGLG3-MdNAC83 network controlling the quantitative segregation of apple fruit storability","authors":"Bei Wu,&nbsp;Fei Shen,&nbsp;Ziying Zhou,&nbsp;Wenhui Ren,&nbsp;Yi Wang,&nbsp;Ting Wu,&nbsp;Zhenhai Han,&nbsp;Xinzhong Zhang","doi":"10.1111/jipb.70044","DOIUrl":"10.1111/jipb.70044","url":null,"abstract":"<p>Dissecting quantitative traits into Mendelian factors is a great challenge in genetics. Apple fruit storability is a complex trait controlled by multi-genes with unequal effects. We previously identified 62 quantitative trait loci (QTLs) associated with apple fruit storability and genomics-assisted prediction (GAP) models were trained using 56 QTL-based markers. Here, three candidate genes, <i>MdNAC83</i>, <i>MdBPM2</i>, and <i>MdRGLG3</i>, were screened from the regions of QTLs with large <i>G</i>’ value and large genetic effects. Both a 216-bp deletion and an SNP934 T/C at the promoter of <i>MdNAC83</i> were associated with higher <i>MdNAC83</i> expression but an SNP388 G/A at the coding region significantly reduced the activity to activate the expression of the target genes <i>MdACO1</i>, <i>MdMANA3</i>, and <i>MdXTH28</i>. MdBPM2 and MdRGLG3 participated in the ubiquitination of MdNAC83. SNP657 T/A of <i>MdBPM2</i> and SNP167 C/G of <i>MdRGLG3</i> caused a reduction in the activity to ubiquitinate MdNAC83. By the addition of functional markers to the GenoBaits SNP array, the prediction accuracy of the updated GAP models increased to 0.7723/0.6231 and 0.5639/0.5345 for flesh firmness/crispness at harvest and flesh firmness/crispness retainability, respectively. The variation network involving eight simple Mendelian variations in six genes helps to gain insight into the molecular quantitative genetics, to improve breeding strategy, and to provide targets for future genome editing.</p>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"68 1","pages":"169-190"},"PeriodicalIF":9.3,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.70044","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145197721","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
From uncontrolled to controllable: A novel approach for nucleotide-binding, leucine-rich repeat bioengineering 从不受控制到可控:核苷酸结合、富含亮氨酸的重复生物工程的新方法。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-01 DOI: 10.1111/jipb.70046
Yi Li, Chenhao Ma, Xinchen Wang, Chenchen Zhong, Savithramma P. Dinesh-Kumar, Yongliang Zhang

Gene scarcity and resistance breakdown limit the utility of plant NLRs. Findings in Nature by Wang et al. (2025) describe a bioengineering strategy using N-terminal blocking peptides to achieve tunable NLR activation, providing durable, broad-spectrum resistance to potyviruses in plants.

基因稀缺和抗性破坏限制了植物NLRs的利用。Wang等人(2025)在Nature上发表的研究结果描述了一种利用n端阻断肽实现可调NLR激活的生物工程策略,为植物提供持久的、广谱的多病毒抗性。
{"title":"From uncontrolled to controllable: A novel approach for nucleotide-binding, leucine-rich repeat bioengineering","authors":"Yi Li,&nbsp;Chenhao Ma,&nbsp;Xinchen Wang,&nbsp;Chenchen Zhong,&nbsp;Savithramma P. Dinesh-Kumar,&nbsp;Yongliang Zhang","doi":"10.1111/jipb.70046","DOIUrl":"10.1111/jipb.70046","url":null,"abstract":"<p>Gene scarcity and resistance breakdown limit the utility of plant NLRs. Findings in <i>Nature</i> by Wang <i>et al</i>. (2025) describe a bioengineering strategy using N-terminal blocking peptides to achieve tunable NLR activation, providing durable, broad-spectrum resistance to potyviruses in plants.\u0000\u0000 <figure>\u0000 <div><picture>\u0000 <source></source></picture><p></p>\u0000 </div>\u0000 </figure></p>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"67 12","pages":"3059-3061"},"PeriodicalIF":9.3,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.70046","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145197724","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Journal of Integrative Plant Biology
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1