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TgRAV1–TgWRKY74–TgACS13 module fine-tunes ethylene biosynthesis to modulate waterlogging-induced root vitality in the gymnosperm Torreya grandis TgRAV1-TgWRKY74-TgACS13模块微调乙烯生物合成以调节裸子植物香榧的根系活力。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-25 DOI: 10.1111/jipb.70100
Jiawen Yan, Zhihui Liu, Tongtong Wang, Ruoman Wang, Shuya Wang, Xiao Liu, Ya Liu, Jingwei Yan, Jiasheng Wu

Waterlogging stress is a major abiotic stress that severely limits plant growth and development. However, little is known about the effects of waterlogging stress on the growth and development of gymnosperms. In this study, we demonstrated that the TgRAV1–TgWRKY74–TgACS13 module regulates ethylene-enhanced root vitality during waterlogging stress in the gymnosperm Torreya grandis. Root vitality, the physiological status of root tissues, reflects their metabolic activity and cell viability of roots. Waterlogging stress induces ethylene accumulation in T. grandis roots, thereby enhancing root vitality. The ethylene biosynthesis gene TgACS13 positively regulates root vitality under waterlogging stress by increasing ethylene levels. The transcription factors TgWRKY74 and TgRAV1 directly regulate TgACS13 expression by binding to its promoter. Furthermore, waterlogging stress activates TgWRKY74 to promote TgACS13 transcription and alleviates the inhibitory effect of TgRAV1 on its expression, resulting in ethylene-enhanced root vitality during waterlogging stress. In addition, TgRAV1 interacts with TgWRKY74 both in vivo and in vitro, reducing the transcriptional activity of TgWRKY74 by inhibiting its DNA-binding ability without affecting the transcriptional activity of TgRAV1. Therefore, the TgRAV1–TgWRKY74 module finely tunes TgACS13 expression to regulate ethylene accumulation through multiple mechanisms, thereby maintaining the vitality of T. grandis roots exposed to waterlogging stress.

涝渍胁迫是严重制约植物生长发育的主要非生物胁迫。然而,涝渍胁迫对裸子植物生长发育的影响尚不清楚。在本研究中,我们证明了TgRAV1-TgWRKY74-TgACS13模块在涝渍胁迫下调控乙烯增强的裸子植物香榧根活力。根活力是根组织的生理状态,反映了根的代谢活性和细胞活力。涝渍胁迫诱导巨叶松根系乙烯积累,从而增强根系活力。乙烯合成基因TgACS13通过提高乙烯水平正向调节涝渍胁迫下根系活力。转录因子TgWRKY74和TgRAV1通过结合TgACS13的启动子直接调控其表达。此外,涝渍胁迫激活TgWRKY74,促进TgACS13转录,减轻TgRAV1对其表达的抑制作用,导致乙烯增强了涝渍胁迫下的根活力。此外,TgRAV1在体内和体外均与TgWRKY74相互作用,通过抑制TgWRKY74的dna结合能力,降低TgWRKY74的转录活性,但不影响TgRAV1的转录活性。因此,TgRAV1-TgWRKY74模块通过多种机制精细调控TgACS13的表达,调控乙烯的积累,从而维持涝渍胁迫下大叶参根系的活力。
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引用次数: 0
Methionine oxidation-regulated MaERF95L controls starch and sucrose metabolism in postharvest banana during ripening 蛋氨酸氧化调控MaERF95L控制采后香蕉成熟过程中淀粉和蔗糖的代谢。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-25 DOI: 10.1111/jipb.70075
Wan-shan Xie, Yun-yi Xiao, Wei Wei, Wei Shan, Jian-fei Kuang, Wang-jin Lu, Jian-ye Chen, Ying-ying Yang

The conversion of starch into sugar during postharvest banana (Musa acuminata, AAA group) ripening significantly influences fruit quality. Ethylene response factors (ERFs) regulate fruit ripening through ethylene signaling, while redox modifications affect their activity by post-translational changes. This study identifies MaERF95L, an EDLL-domain ERF in banana, as a central regulator of starch-to-sugar metabolism during postharvest ripening. Using electrophoretic mobility shift and dual-luciferase reporter assays, we demonstrate that MaERF95L directly binds to and activates the expression of six genes related to starch degradation and sucrose synthesis (MaGWD1, MaAMY3, MaBAM1, MaHK5, MaPGI1, and MaUPG3). MaERF95L overexpression accelerates starch degradation and sugar accumulation in both banana and tomato fruits during ripening. Notably, methionine (Met, M)-based oxidation modifications (e.g., Met-16 and Met-77) suppress MaERF95L's transcriptional regulatory function. Simulating oxidation by Met→glutamine (Gln, Q) substitutions (MaERF95LM16Q/M77Q) alters its subcellular localization and also impairs its DNA-binding and transcriptional activation capabilities. In contrast, blocking oxidation by Met→Valine (Val, V) substitutions (MaERF95LM16V/M77V) maintains its transcriptional activation activity. Furthermore, transient overexpression of MaERF95LM16Q/M77Q in bananas reduced MaERF95L's activation of genes related to starch degradation and sucrose synthesis, and starch-to-sugar conversion. However, the overexpression of MaERF95LM16V/M77V showed no effect on MaERF95L's activation function. These findings reveal a Met oxidation-sensitive regulatory mechanism connecting reactive oxygen species signaling to carbohydrate metabolism, providing molecular insights into quality formation regulation during ripening and potential strategies for reducing postharvest losses in climacteric fruits.

采后香蕉(Musa acuminata, AAA组)成熟过程中淀粉转化为糖对果实品质有显著影响。乙烯响应因子(ERFs)通过乙烯信号调控果实成熟,而氧化还原修饰通过翻译后变化影响其活性。本研究确定了香蕉中edll结构域ERF MaERF95L作为采后成熟过程中淀粉-糖代谢的中心调节因子。通过电泳迁移率转移和双荧光素酶报告基因检测,我们发现MaERF95L直接结合并激活了与淀粉降解和蔗糖合成相关的6个基因(MaGWD1、MaAMY3、MaBAM1、MaHK5、MaPGI1和MaUPG3)的表达。MaERF95L过表达加速了香蕉和番茄果实成熟过程中淀粉的降解和糖的积累。值得注意的是,基于蛋氨酸(Met, M)的氧化修饰(例如Met-16和Met-77)抑制了MaERF95L的转录调节功能。通过Met→谷氨酰胺(Gln, Q)取代(MaERF95LM16Q/M77Q)模拟氧化改变了其亚细胞定位,也损害了其dna结合和转录激活能力。相反,通过Met→缬氨酸(Val, V)取代(MaERF95LM16V/M77V)阻断氧化可维持其转录激活活性。此外,香蕉中MaERF95LM16Q/M77Q的短暂过表达降低了MaERF95L对淀粉降解和蔗糖合成以及淀粉-糖转化相关基因的激活。而过表达MaERF95LM16V/M77V对MaERF95L的激活功能没有影响。这些发现揭示了Met氧化敏感的调节机制,将活性氧信号与碳水化合物代谢联系起来,为成熟过程中品质形成的调控提供了分子见解,并为减少更年期果实采后损失提供了潜在的策略。
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引用次数: 0
Climate-driven biomass allocation patterns in herbaceous plants of Northern China's drylands. 气候驱动的中国北方旱地草本植物生物量分配格局
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-25 DOI: 10.1111/jipb.70092
Ya Hu, Zhaobin Song, Xiangyun Li, Min Chen, Ping Yue, Shaokun Wang, Xujun Ma, Liangxu Liu, Xiaoan Zuo

Biomass allocation is crucial for predicting ecosystem responses to global change, and yet, whether patterns follow the plastic optimal partitioning theory (OPT) or the constrained allometric partitioning theory (APT) remains contentious across different biomes. A key uncertainty is whether vast, functionally distinct ecosystems, such as temperate and alpine drylands, show different allocation strategies. Here, we investigated root:shoot ratio (R/S) patterns across 120 sites spanning temperate and alpine drylands in northern China. Significant differences in allocation were observed, with temperate drylands showing lower R/S than alpine regions. In temperate drylands, R/S scaled allometrically with plant community size, consistent with APT, with key soil factors exerting only an indirect influence through their effects on plant community size. Conversely, in alpine drylands, R/S was insensitive to plant community size and instead responded directly to the mean annual temperature, a pattern indicative of OPT. We propose that this strategic divergence is linked to their underlying community functional structures. Communities with greater functional dissimilarity may achieve higher niche complementarity, providing the necessary capacity to optimize allocation in response to environmental constraints. Our findings demonstrate that climatic regimes drive alternative biomass allocation strategies, providing both a predictive framework for vegetation responses and a theoretical basis for dryland ecosystem restoration under climate change.

生物量分配对于预测生态系统对全球变化的响应至关重要,然而,在不同的生物群系中,生物量分配模式是遵循塑性最优分配理论(OPT)还是约束异速分配理论(APT)仍然存在争议。一个关键的不确定性是,巨大的、功能独特的生态系统,如温带和高山旱地,是否表现出不同的分配策略。本文研究了中国北方温带和高寒旱地120个样地的根冠比(R/S)格局。在分配上存在显著差异,温带旱地的R/S低于高寒地区。在温带旱地,R/S与植物群落大小呈异比例变化,与APT一致,关键土壤因子仅通过其对植物群落大小的影响产生间接影响。相反,在高山旱地,R/S对植物群落规模不敏感,而是直接响应年平均温度,这一模式表明了OPT。我们认为这种战略差异与它们潜在的群落功能结构有关。功能差异较大的群落可能具有较高的生态位互补性,从而提供了响应环境约束优化配置的必要能力。研究结果表明,气候机制驱动了不同的生物量分配策略,为植被响应提供了预测框架,并为气候变化下的旱地生态系统恢复提供了理论基础。
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引用次数: 0
A microbiome–epigenome axis: SRB-derived H2S suppresses OsHDA710 to activate drought responses in rice 微生物组-表观基因组轴:srb衍生的H2S抑制OsHDA710激活水稻的干旱响应。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-25 DOI: 10.1111/jipb.70104
Jing Zhang, Mingjian Zhou, Yanjie Xie

这篇评论强调了最近外源施用丁酸钠作为一种组蛋白去乙酰化酶抑制剂的发现,丁酸钠通过丰富硫酸盐还原细菌来提高根际来源的H2S产量,从而提高水稻抗旱性,从而抑制OsHDA710的表达和活性,激活干旱反应。
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引用次数: 0
Arabidopsis homologs of gp78 modulate the HRD1 complex component AtOS9 by ERAD tuning gp78的拟南芥同源物通过ERAD调控HRD1复合物组分AtOS9。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-25 DOI: 10.1111/jipb.70088
Ruijun Liu, Kangxu Zhao, Fengyong Ge, Qian Chen, Qingzhen Zhao, Qian Wang, Yaqiong Li, Feifei Yu, Ran Xia, Qi Xie, Yaorong Wu

Endoplasmic reticulum-associated degradation (ERAD) is an important mechanism for degrading misfolded proteins, and is mediated by different complexes containing several conserved ER-localized ubiquitin ligases, such as Hrd1, Doa10, and gp78. Recent studies have shown that the ERAD machinery is conserved in eukaryotes. However, it remains unknown whether plants have gp78 homologs. We report a functional study of Arabidopsis homologs of gp78 and their involvement in ERAD. T-DNA insertion mutations in Arabidopsis gp78 genes, AtGP78A and AtGP78B, increased degradation of mutated brassinosteroid (BR) receptors, bri1-5 and bri1-9, leading to lower activation of the signaling protein BES1, and thereby enhancing the dwarf phenotypes of bri1-5/9. This is different from the effects of knockout in known ERAD components, which suppress the dwarf phenotypes of bri1-5/9. AtGP78s interacted with and affected the stability of AtOS9, but not other components in the AtHRD1 complex. AtOS9 accumulated in atgp78a-1 atgp78b bri1-5/9, and knockout of AtOS9 rescued the enhanced-dwarf phenotypes of atgp78a-1 atgp78b bri1-5/9. We determined that AtGP78s were involved in plant ERAD by modulating the stability of AtOS9. Taken together, our results not only reveal AtGP78s as new ERAD components but also reveal a relationship between AtGP78s and the AtHRD1 complex in plants.

内质网相关降解(ERAD)是降解错误折叠蛋白的重要机制,它是由不同的复合物介导的,这些复合物含有几种保守的内质网定位的泛素连接酶,如Hrd1、Doa10和gp78。最近的研究表明,ERAD机制在真核生物中是保守的。然而,植物是否有gp78同源物尚不清楚。我们报道了一项关于gp78的拟南芥同源物及其参与ERAD的功能研究。拟南芥gp78基因AtGP78A和AtGP78B的T-DNA插入突变增加了突变的油菜素内酯受体bri1-5和bri1-9的降解,导致信号蛋白BES1的激活降低,从而增强了bri1-5/9的矮化表型。这与敲除已知的ERAD成分的作用不同,敲除会抑制bri1-5/9的矮化表型。AtGP78s与AtOS9相互作用并影响其稳定性,但不影响AtHRD1复合物中的其他组分。AtOS9在atgp78a-1 atgp78b bri1-5/9中积累,敲除AtOS9挽救了atgp78a-1 atgp78b bri1-5/9的增强矮化表型。我们确定atgp78通过调节AtOS9的稳定性参与植物ERAD。综上所述,我们的研究结果不仅揭示了AtGP78s作为新的ERAD成分,而且揭示了AtGP78s与植物中AtHRD1复合物之间的关系。
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引用次数: 0
To grow or not to grow: NRT1.1B as a dual receptor for ABA and nitrate 生长或不生长:nrt11 b作为ABA和硝酸盐的双重受体。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-18 DOI: 10.1111/jipb.70095
Soichi Kojima, Makoto Matsuoka

This Commentary highlights research showing that NRT1.1B acts as a dual receptor for nitrate and abscisic acid, enabling plants to balance growth and stress responses. By integrating nutrient and hormone signals, this mechanism explains how plants decide whether to continue or stop growing under fluctuating environmental conditions.

这篇评论强调了nrt11 b作为硝酸盐和脱落酸的双重受体,使植物平衡生长和胁迫反应的研究。通过整合营养和激素信号,这一机制解释了植物如何在波动的环境条件下决定是否继续或停止生长。
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引用次数: 0
Chromosome-scale genome of Dioscorea nipponica and functional diversification of the DnUGT73 subfamily in steroidal saponin glycosylation. 日本薯蓣染色体尺度基因组及DnUGT73亚家族在甾体皂苷糖基化中的功能多样化。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-18 DOI: 10.1111/jipb.70089
Xiaotong Wang, Ziyan Xie, Jing Wang, Li Xu, Wei Song, Maolun Gao, Shanshan Chen, Mofan Zhang, Xiaowei Du, Yan Liu, Chunbo Teng, Chengwei Liu, Shilin Chen, Zhichao Xu

The UGT73 subfamily in Dioscorea nipponica exhibits remarkable catalytic diversity in glycosylation of steroidal saponins. Notably, DnU26 from the UGT73 subfamily and members of the phylogenetically distant UGT91 family independently evolved identical catalytic functions, revealing convergent evolution and the remarkable flexibility of plant glycosyltransferases in generating metabolic diversity.

薯蓣UGT73亚家族在甾体皂苷糖基化方面表现出显著的催化多样性。值得注意的是,来自UGT73亚家族的DnU26和系统发育上较远的UGT91家族成员独立进化出相同的催化功能,揭示了植物糖基转移酶在产生代谢多样性方面的趋同进化和显著的灵活性。
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引用次数: 0
Traits improvement of wild rice O. rufipogon via multiplex genome editing 利用多重基因组编辑技术改良野生稻稻稻的性状。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-18 DOI: 10.1111/jipb.70087
Chang Tian, Xu Tang, Guangzhong Zhang, Rui Zhang, Xinruolan Yang, Lei Ding, Caiyun Yin, Hongfei Lin, Fenglin Su, Suikang Wang, Xiaoxia Li, Lianguang Shang, Yong Zhang, Quan Wang

Multiplex genome editing of seven genes for the rapid improvement of target traits in wild rice Oryza rufipogon produced lines with enhanced agronomic traits, including erect plant architecture, shortened awns, yellowish hull color, reduced seed shattering, white-colored pericarps, and other improvements.

对7个基因进行多重基因组编辑,快速改善野生稻稻的目标性状,使其具有增强的农艺性状,包括直立的植株结构、缩短的杂草、淡黄色的外壳、减少的种子破碎、白色的果皮等。
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引用次数: 0
Unlocking the potential of DULL NITROGEN RESPONSE 1 for climate-smart crop breeding under elevated CO2 在二氧化碳浓度升高的情况下,释放钝氮响应1在气候智能型作物育种中的潜力。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-18 DOI: 10.1111/jipb.70084
Muhammad Imran, Ming Xu

This commentary highlights the role of DULL NITROGEN RESPONSE 1 (DNR1) in improving crops under changing climates. By understanding how DNR1 affects rice growth, the study paves the way for developing climate-resilient crop varieties (e.g., rice, wheat, and maize), potentially boosting yields and ensuring food security under elevated CO2 levels.

这篇评论强调了暗氮响应1 (DNR1)在气候变化下改善作物的作用。通过了解DNR1如何影响水稻生长,该研究为开发适应气候变化的作物品种(如水稻、小麦和玉米)铺平了道路,有可能提高产量并确保二氧化碳水平升高下的粮食安全。
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引用次数: 0
Rice blast pathogen effector AvrPib compromises disease resistance by targeting Raf-like protein kinase OsMAPKKK72 to inhibit MAPK signaling 稻瘟病病原体效应剂AvrPib通过靶向raf样蛋白激酶OsMAPKKK72来抑制MAPK信号传导从而降低抗病性。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-18 DOI: 10.1111/jipb.70072
Zhanchun Wang, Guitao Zhong, Beibei Zhang, Yilin Xie, Yufan Gan, Dingzhong Tang, Wei Wang

Phytopathogens, such as the rice blast fungus Magnaporthe oryzae, suppress plant immunity for reproduction by secreting effectors into plant cells. The M. oryzae effector AvrPib is known to be recognized by Pib, an intracellular nucleotide-binding, leucine-rich repeat receptor (NLR), in rice. However, how AvrPib manipulates blast resistance and its potential targets in rice remains unclear. In this study, we showed that AvrPib interacts with the rice MAP KINASE KINASE KINASE 72 (OsMAPKKK72), a previously uncharacterized Raf-like MAPKKK. The osmapkkk72 mutant shows enhanced susceptibility to the M. oryzae strain Guy11 and reduced mitogen-activated protein kinase (MAPK) activation after treatment with chitin. Furthermore, OsMAPKKK72 interacts with MAP KINASE KINASE 9 (OsMKK9) and increases the interaction between OsMKK9 and OsMPK3/6. Accordingly, OsMKK9 positively regulates rice blast resistance and increases MAPK activation in an OsMAPKKK72-dependent manner following chitin treatment in rice, suggesting that OsMAPKKK72 may serve as a scaffold in the MAPK cascade. AvrPib inhibits the interaction between OsMAPKKK72 and OsMKK9, leading to reduced MAPK activation, which is mediated by OsMKK9. Taken together, our results reveal the critical roles of OsMAPKKK72 in blast resistance and uncover a mechanism wherein AvrPib suppresses rice blast resistance by interference with MAPK activation by targeting a key component in the MAPK cascade.

植物病原体,如稻瘟病菌Magnaporthe oryzae,通过向植物细胞分泌效应物来抑制植物的生殖免疫。已知M. oryzae效应物AvrPib可被Pib识别,Pib是水稻细胞内核苷酸结合,富含亮氨酸的重复受体(NLR)。然而,AvrPib如何操纵稻瘟病抗性及其潜在靶点仍不清楚。在这项研究中,我们发现AvrPib与水稻MAP激酶激酶激酶72 (OsMAPKKK72)相互作用,这是一种以前未被表征的raf样MAPKKK。osmapkkk72突变体对M. oryzae菌株Guy11的敏感性增强,并在几丁质处理后降低了丝裂原活化蛋白激酶(MAPK)的激活。此外,OsMAPKKK72与MAP激酶激酶9 (OsMKK9)相互作用,并增加OsMKK9与OsMPK3/6之间的相互作用。因此,在水稻几丁质处理后,OsMKK9正调控水稻稻瘟病抗性,并以依赖于OsMAPKKK72的方式增加MAPK的激活,这表明OsMAPKKK72可能在MAPK级联中起支架作用。AvrPib抑制OsMAPKKK72和OsMKK9之间的相互作用,导致由OsMKK9介导的MAPK活化降低。综上所述,我们的研究结果揭示了OsMAPKKK72在稻瘟病抗性中的关键作用,并揭示了AvrPib通过靶向MAPK级联中的一个关键成分干扰MAPK激活来抑制稻瘟病抗性的机制。
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引用次数: 0
期刊
Journal of Integrative Plant Biology
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