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Chromosome-scale genome of Dioscorea nipponica and functional diversification of the DnUGT73 subfamily in steroidal saponin glycosylation. 日本薯蓣染色体尺度基因组及DnUGT73亚家族在甾体皂苷糖基化中的功能多样化。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-18 DOI: 10.1111/jipb.70089
Xiaotong Wang, Ziyan Xie, Jing Wang, Li Xu, Wei Song, Maolun Gao, Shanshan Chen, Mofan Zhang, Xiaowei Du, Yan Liu, Chunbo Teng, Chengwei Liu, Shilin Chen, Zhichao Xu

The UGT73 subfamily in Dioscorea nipponica exhibits remarkable catalytic diversity in glycosylation of steroidal saponins. Notably, DnU26 from the UGT73 subfamily and members of the phylogenetically distant UGT91 family independently evolved identical catalytic functions, revealing convergent evolution and the remarkable flexibility of plant glycosyltransferases in generating metabolic diversity.

薯蓣UGT73亚家族在甾体皂苷糖基化方面表现出显著的催化多样性。值得注意的是,来自UGT73亚家族的DnU26和系统发育上较远的UGT91家族成员独立进化出相同的催化功能,揭示了植物糖基转移酶在产生代谢多样性方面的趋同进化和显著的灵活性。
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引用次数: 0
Unlocking the potential of DULL NITROGEN RESPONSE 1 for climate-smart crop breeding under elevated CO2. 在二氧化碳浓度升高的情况下,释放钝氮响应1在气候智能型作物育种中的潜力。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-18 DOI: 10.1111/jipb.70084
Muhammad Imran, Ming Xu

This commentary highlights the role of DULL NITROGEN RESPONSE 1 (DNR1) in improving crops under changing climates. By understanding how DNR1 affects rice growth, the study paves the way for developing climate-resilient crop varieties (e.g., rice, wheat, and maize), potentially boosting yields and ensuring food security under elevated CO2 levels.

这篇评论强调了暗氮响应1 (DNR1)在气候变化下改善作物的作用。通过了解DNR1如何影响水稻生长,该研究为开发适应气候变化的作物品种(如水稻、小麦和玉米)铺平了道路,有可能提高产量并确保二氧化碳水平升高下的粮食安全。
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引用次数: 0
Rice blast pathogen effector AvrPib compromises disease resistance by targeting Raf-like protein kinase OsMAPKKK72 to inhibit MAPK signaling. 稻瘟病病原体效应剂AvrPib通过靶向raf样蛋白激酶OsMAPKKK72来抑制MAPK信号传导从而降低抗病性。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-18 DOI: 10.1111/jipb.70072
Zhanchun Wang, Guitao Zhong, Beibei Zhang, Yilin Xie, Yufan Gan, Dingzhong Tang, Wei Wang

Phytopathogens, such as the rice blast fungus Magnaporthe oryzae, suppress plant immunity for reproduction by secreting effectors into plant cells. The M. oryzae effector AvrPib is known to be recognized by Pib, an intracellular nucleotide-binding, leucine-rich repeat receptor (NLR), in rice. However, how AvrPib manipulates blast resistance and its potential targets in rice remains unclear. In this study, we showed that AvrPib interacts with the rice MAP KINASE KINASE KINASE 72 (OsMAPKKK72), a previously uncharacterized Raf-like MAPKKK. The osmapkkk72 mutant shows enhanced susceptibility to the M. oryzae strain Guy11 and reduced mitogen-activated protein kinase (MAPK) activation after treatment with chitin. Furthermore, OsMAPKKK72 interacts with MAP KINASE KINASE 9 (OsMKK9) and increases the interaction between OsMKK9 and OsMPK3/6. Accordingly, OsMKK9 positively regulates rice blast resistance and increases MAPK activation in an OsMAPKKK72-dependent manner following chitin treatment in rice, suggesting that OsMAPKKK72 may serve as a scaffold in the MAPK cascade. AvrPib inhibits the interaction between OsMAPKKK72 and OsMKK9, leading to reduced MAPK activation, which is mediated by OsMKK9. Taken together, our results reveal the critical roles of OsMAPKKK72 in blast resistance and uncover a mechanism wherein AvrPib suppresses rice blast resistance by interference with MAPK activation by targeting a key component in the MAPK cascade.

植物病原体,如稻瘟病菌Magnaporthe oryzae,通过向植物细胞分泌效应物来抑制植物的生殖免疫。已知M. oryzae效应物AvrPib可被Pib识别,Pib是水稻细胞内核苷酸结合,富含亮氨酸的重复受体(NLR)。然而,AvrPib如何操纵稻瘟病抗性及其潜在靶点仍不清楚。在这项研究中,我们发现AvrPib与水稻MAP激酶激酶激酶72 (OsMAPKKK72)相互作用,这是一种以前未被表征的raf样MAPKKK。osmapkkk72突变体对M. oryzae菌株Guy11的敏感性增强,并在几丁质处理后降低了丝裂原活化蛋白激酶(MAPK)的激活。此外,OsMAPKKK72与MAP激酶激酶9 (OsMKK9)相互作用,并增加OsMKK9与OsMPK3/6之间的相互作用。因此,在水稻几丁质处理后,OsMKK9正调控水稻稻瘟病抗性,并以依赖于OsMAPKKK72的方式增加MAPK的激活,这表明OsMAPKKK72可能在MAPK级联中起支架作用。AvrPib抑制OsMAPKKK72和OsMKK9之间的相互作用,导致由OsMKK9介导的MAPK活化降低。综上所述,我们的研究结果揭示了OsMAPKKK72在稻瘟病抗性中的关键作用,并揭示了AvrPib通过靶向MAPK级联中的一个关键成分干扰MAPK激活来抑制稻瘟病抗性的机制。
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引用次数: 0
Dissecting the biosynthesis, regulation, and metabolic engineering of steroidal glycoalkaloids in tomato. 解析番茄中甾体糖生物碱的生物合成、调控及代谢工程。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-17 DOI: 10.1111/jipb.70077
Jiayi Chen, Mingchun Liu, Yang Zhang, Feng Bai

Steroidal glycoalkaloids (SGAs) are predominantly found in Solanaceous plants, including tomato (Solanum lycopersicum). In addition to their roles in resistance to herbivores, pathogens, and environmental stresses, SGAs exert antifungal, antibacterial, and anticancer effects. Over the past 15 years, the biosynthesis pathway of SGAs in tomato has been progressively investigated. A growing number of intermediate compounds and novel biosynthetic enzymes have been identified. In addition, various regulatory factors and their underlying regulatory mechanisms governing SGAs biosynthesis have been increasingly elucidated. Building upon these advances in understanding the SGAs biosynthetic pathway and its regulatory network, metabolic engineering of the SGAs pathway in tomato has been achieved using techniques such as gene editing. This mini review summarizes the current understanding of SGAs biosynthesis and regulatory mechanisms in tomato, and provides an overview of recent progress and future perspectives in metabolic engineering applications targeting this pathway.

甾体糖生物碱(SGAs)主要存在于茄科植物中,包括番茄(Solanum lycopersicum)。除了在抵抗食草动物、病原体和环境压力方面的作用外,SGAs还具有抗真菌、抗菌和抗癌作用。近15年来,人们对番茄中SGAs的生物合成途径进行了深入的研究。越来越多的中间化合物和新的生物合成酶被发现。此外,调控SGAs生物合成的各种调控因子及其潜在的调控机制已被越来越多地阐明。在了解SGAs生物合成途径及其调控网络的基础上,利用基因编辑等技术实现了番茄SGAs途径的代谢工程。本文综述了目前对番茄SGAs生物合成及其调控机制的认识,并对其在代谢工程中的应用前景进行了展望。
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引用次数: 0
Auxin reimagined: Transport and signaling patterns. 生长素的重新构想:运输和信号模式。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-17 DOI: 10.1111/jipb.70078
Xiaoyan Cang, Qi Wang, Lanxin Li, Han Han, Ming Chang

This commentary explores recent advances that reveal how auxin transport and signaling precisely regulate its function in plant growth and development and offer new tools for precise plant engineering. These advances include a high-resolution structures of AUX1 and insights into TIR1-generated cyclic AMP signaling and the bi-layer ARF/cis-element code.

本文探讨了植物生长发育过程中生长素运输和信号传导如何精确调控其功能的最新进展,并为植物精密工程提供了新的工具。这些进展包括AUX1的高分辨率结构和对tir1产生的循环AMP信号和双层ARF/顺式元件代码的见解。
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引用次数: 0
Engineered peptides bolster plant plasticity. 工程肽增强了植物的可塑性。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-16 DOI: 10.1111/jipb.70093
Ziyao Hu, Langrang Zhang, Huibin Han, Guodong Wang

This review examines signaling peptides, which function in plant growth, development, and environmental adaptation, making them promising tools for crop improvement. Their gene-encoded nature and synthetic plasticity facilitate functional engineering. Engineered peptides offer superior binding affinity, functional specificity, and ligand stability, providing a multifaceted strategy to improve crop performance.

本文综述了在植物生长、发育和环境适应中起作用的信号肽,使其成为作物改良的有希望的工具。它们的基因编码性质和合成可塑性为功能工程提供了便利。工程肽具有优异的结合亲和力、功能特异性和配体稳定性,为提高作物生产性能提供了多方面的策略。
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引用次数: 0
Arabidopsis MAPKKK18-MAPKK3-MAPK1/2/7/14 cascade positively regulates flowering by phosphorylating NF-YB2. 拟南芥MAPKKK18-MAPKK3-MAPK1/2/7/14级联通过磷酸化NF-YB2正向调控开花。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-16 DOI: 10.1111/jipb.70073
Huixian Cai, Shuo Wang, Yingfang Shao, Changai Wu, Guodong Yang, Kang Yan, Shizhong Zhang, Chengchao Zheng, Jinguang Huang

Mitogen-activated protein kinase (MAPK) cascades play vital roles in regulating plant growth, development, and stress responses. Nevertheless, the complete MAPK cascade that regulates the flowering time of Arabidopsis thaliana has not been established. A MAPK module comprising MAPKKK18, MAPKK3, and MAPK1/2/7/14 accelerates flowering in Arabidopsis. Through direct interaction, MAPK1/2/7/14 phosphorylates the S24 residue of NF-YB2. Phosphorylated NF-YB2 enhances the stability of the heterotrimeric CO ~ NF-YB2 ~ NF-YC3/C9 complex and the expression of FT. Accumulation of NF-YB2 significantly promotes flowering, whereas the role of NF-YB2S24A in this process is less pronounced. Compared with the transgenic plants overexpressing MAPKKK18 in the wild-type (WT) background, the nf-yb2 plants overexpressing MAPKKK18 bolt considerably later. Taken together, the MAPKKK18-mediated signaling cascade exerts tight control over the flowering time of Arabidopsis by modulating the phosphorylation status of NF-YB2, unveiling a flexible regulatory pathway to fine-tune plant development.

丝裂原活化蛋白激酶(MAPK)级联在调节植物生长、发育和逆境反应中起着重要作用。然而,调控拟南芥开花时间的完整MAPK级联尚未建立。由MAPKKK18、MAPKK3和MAPK1/2/7/14组成的MAPK模块加速了拟南芥的开花。MAPK1/2/7/14通过直接相互作用磷酸化NF-YB2的S24残基。磷酸化的NF-YB2增强了CO ~ NF-YB2 ~ NF-YC3/C9异三聚体复合物的稳定性和FT的表达。NF-YB2的积累显著促进开花,而NF-YB2S24A在这一过程中的作用不明显。与野生型(WT)背景下过表达MAPKKK18的转基因植株相比,nf-yb2过表达MAPKKK18的植株的启动时间要晚得多。综上所述,mapkkk18介导的信号级联通过调节NF-YB2的磷酸化状态,对拟南芥的开花时间进行严格控制,揭示了一种灵活的调控途径,以微调植物的发育。
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引用次数: 0
The artificial chemical Y21 serves as a GA-signaling agonist and an auxin analog to promote seed germination and root development. 人工化学物质Y21作为ga信号激动剂和生长素类似物,促进种子萌发和根系发育。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-16 DOI: 10.1111/jipb.70068
Jiahui Xu, Xiaofeng Luo, Shaowei Wei, Yueni Fan, Zhikun Yang, Xiaoting Zhao, Mingyu Xia, Baoshan Xian, Xiaojing Xu, Yali Liu, Yiping Shi, Mengyuan Ren, Juan He, Lei Wang, Wenguan Zhou, Weiming Tan, Kai Shu

Gibberellins (GAs) and auxin play central regulatory roles in seed germination and root system development, respectively, so that the application of these phytohormones to crops would be worthwhile, with an increasing potential demand in agriculture. However, there are few effective chemicals that simultaneously enhance both GA and auxin signaling. Here, we report on an artificial thiourea derivative chemical, Y21, that serves as both a GA-signaling agonist and an auxin analog, promoting seed germination and root development, as well as low-phosphorus tolerance. Phenotypic, biochemical, and genetic evidence demonstrated that Y21 enhances the interaction between GA and its receptor GID1C via the Val239 amino acid residue and consequently promotes degradation of the DELLA proteins REPRESSOR OF ga1-3 (RGA) and RGA-LIKE 2. Furthermore, we found that Y21 interacts with the auxin receptor TIR1 via the Cys405 residue and thus promotes the turnover of the auxin-responsive Aux/IAA proteins. Consequently, Y21 significantly increases low-phosphorus tolerance of treated plants by positively regulating lateral root development. To our knowledge, Y21 is the first GA-signaling agonist to be identified, and our results also demonstrate that this potent synthetic chemical, identified by chemical genetic screening, is effective at modulating plant development and stress tolerance.

赤霉素(giberellins, GAs)和生长素分别在种子萌发和根系发育中起着重要的调节作用,因此这些植物激素在作物上的应用是值得的,在农业上的潜在需求越来越大。然而,很少有有效的化学物质同时增强GA和生长素信号。在这里,我们报道了一种人工硫脲衍生物Y21,它既是ga信号激动剂,也是生长素类似物,促进种子萌发和根系发育,以及低磷耐受性。表型、生化和遗传证据表明,Y21通过Val239氨基酸残基增强了GA与其受体GID1C之间的相互作用,从而促进了ga1-3 (RGA)和RGA- like 2的DELLA蛋白抑制因子的降解。此外,我们发现Y21通过Cys405残基与生长素受体TIR1相互作用,从而促进生长素响应的Aux/IAA蛋白的周转。因此,Y21通过正向调节侧根发育,显著提高了处理植株的低磷耐受性。据我们所知,Y21是第一个被鉴定出的ga信号激动剂,我们的研究结果还表明,通过化学遗传筛选鉴定出的这种有效的合成化学物质,在调节植物发育和抗逆性方面是有效的。
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引用次数: 0
Synergism between SCT1/SCT2 and DNA methylation regulates the expression of Copia2 retrotransposon in rice. SCT1/SCT2与DNA甲基化的协同作用调控水稻Copia2反转录转座子的表达。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-16 DOI: 10.1111/jipb.70070
Zhen-Kun Yang, Wen-Jing Li, Yu-Xiao Wang, Chao Li, Jun-Jie Zhuang, Zhen Liu, Cheng-Cheng Ruan, Yi-Qin He, Jie Yu, Jian-Hong Xu

Transposable elements (TEs) are essential constituents of plant genomes, promoting environmental adaptation and modulating gene expression through novel insertions. Although their activities can also trigger deleterious mutations, host mechanisms have evolved to repress them. Similarly, TEs have developed strategies to counteract silencing for their propagation. Here, the LTR retrotransposon Copia2 was identified as an active TE in japonica rice, with variations in 5-base-pair repeats within its 5'-LTR influencing promoter activity. The expression of Copia2 could be activated by drought conditions, with CG-1 motifs on LTR acting as cis-acting elements recognized by calmodulin-binding transcription activators. Under drought stress, the interaction of drought-induced proteins SCT1 and SCT2 with calmodulin OsCML4 and OsCML31 further activates Copia2 expression, enhancing its sensitivity to Ca2+ signaling. Additionally, decreased DNA methylation of Copia2 under drought conditions, regulated by Ca2+ signaling, facilitates the binding of SCT1 and SCT2 to the LTR. In summary, the drought-induced activity of Copia2 is regulated by the synergy of SCT1/SCT2 and DNA methylation mediated through Ca2+ signaling, potentially contributing to its recent activity in rice.

转座因子(te)是植物基因组的重要组成部分,通过新插入促进环境适应和调节基因表达。尽管它们的活动也可以引发有害的突变,但宿主机制已经进化到抑制它们。同样,te也开发了一些策略来抵消其传播过程中的沉默。在这里,LTR反转录转座子Copia2被鉴定为粳稻中的一个活性TE,其5'-LTR内5碱基对重复序列的变化影响启动子活性。干旱条件可激活Copia2的表达,LTR上的CG-1基序可作为钙调素结合转录激活因子识别的顺式作用元件。干旱胁迫下,干旱诱导蛋白SCT1和SCT2与钙调蛋白OsCML4和OsCML31的相互作用进一步激活Copia2的表达,增强其对Ca2+信号的敏感性。此外,干旱条件下,受Ca2+信号调节的Copia2 DNA甲基化降低,促进了SCT1和SCT2与LTR的结合。综上所述,干旱诱导的Copia2活性是由SCT1/SCT2和Ca2+信号介导的DNA甲基化协同调节的,可能有助于其近期在水稻中的活性。
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引用次数: 0
Breaking plant family barriers: Sensor-helper NLR pairs enable cross-kingdom immune defense. 打破植物家族壁垒:传感器辅助NLR对实现跨界免疫防御。
IF 9.3 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-16 DOI: 10.1111/jipb.70074
Manman Zhang, Cheng Li, Fengquan Liu

This commentary on Du et al. (2025) demonstrates that transferring paired sensor-helper NLRs from Solanaceae to non-asterid species (rice, soybean, and Arabidopsis) overcomes restricted taxonomic functionality, enabling resistance to bacterial leaf streak without fitness costs, and unlocking cross-kingdom immune potential for crop protection.

这篇对Du等人(2025)的评论表明,将成对的传感器辅助NLRs从茄科转移到非菊科物种(水稻、大豆和拟南芥),克服了有限的分类功能,在不耗费适应度成本的情况下,实现了对细菌性叶斑病的抗性,并释放了作物保护的跨界免疫潜力。
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引用次数: 0
期刊
Journal of Integrative Plant Biology
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