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Optimising the detection of Trichophyton indotineae and its prevalence in a large Australian laboratory 优化印尼毛癣菌的检测及其在澳大利亚一个大型实验室的流行。
IF 3 3区 医学 Q1 PATHOLOGY Pub Date : 2025-05-18 DOI: 10.1016/j.pathol.2025.03.008
Kyra Y.L. Chua , Catriona L. Halliday , Amber Mason , Sara Vogrin , James Knox , Sharon C-A. Chen
The aim of this study was to estimate the prevalence of Trichophyton indotineae, an emerging drug-resistant fungus, in specimens submitted for dermatophyte examination at a large laboratory in Melbourne, Australia, from January to June 2024, and to examine approaches for best laboratory practice for detection of this species. T. indotineae has not been previously isolated at our laboratory. We examined all skin and hair specimens (nail specimens were excluded) ​for dermatophyte presence by microscopy and culture; species identification was performed by routine phenotypic methods. Trichophyton interdigitale, Trichophyton mentagrophytes and Trichophyton isolates identified to genus level only, which were urease-negative or urease-indeterminate after 7 days, underwent internal transcribed spacer (ITS) region sequencing for definitive identification. A total of 202 Trichophyton isolates from 202 specimens (196 patients) were studied. The most common site of infection was the foot (tinea pedis, 39.3%) followed by, collectively, sites not specified (27.6%) ​and the groin (tinea cruris, 13.8%). Final identification revealed Trichophyton rubrum (n=128, 63.4%) as the most frequent species, followed by T. interdigitale (n=38, 18.8%) and T. indotineae (n=13, 6.4%). All T. indotineae isolates were initially phenotypically identified as T. interdigitale (n=7) or as Trichophyton species (n=6). T. indotineae caused tinea corporis (n=4, 30.8%), tinea cruris (n=3, 23.1%), tinea manuum (n=2, 15.4%), tinea pedis (n=1, 7.7%), tinea capitis (n=1, 7.7%) ​and tinea in an unspecified site (n=2, 15.4%). The estimated prevalence of T. indotineae was 0.6% [95% confidence interval (CI) 0.3–1.0]. T. indotineae cannot be identified using phenotypic methods, and identification requires ITS sequencing. Whilst apparently uncommon herein, further studies are warranted to more accurately determine the likelihood of encountering this important species in different populations.
本研究的目的是估计2024年1月至6月在澳大利亚墨尔本的一个大型实验室提交的皮肤真菌检查标本中出现的新型耐药真菌印多毛癣菌的流行率,并研究检测该物种的最佳实验室实践方法。本实验室以前未分离到印支睾酮。我们通过显微镜和培养检查了所有皮肤和头发标本(指甲标本除外)是否存在皮癣菌;物种鉴定采用常规表型方法进行。对7 d后脲酶阴性或脲酶不确定的毛癣菌(Trichophyton interdigitale)、毛癣菌(Trichophyton mentagrophytes)和仅鉴定到属水平的毛癣菌(Trichophyton)进行内部转录间隔区(ITS)测序以确定鉴定。从202份标本(196例患者)中分离出202株毛癣菌。最常见的感染部位是足部(足癣,39.3%),其次是未指定部位(27.6%)和腹股沟(股癣,13.8%)。最终鉴定结果显示,红毛蝗(Trichophyton rubrum, n=128,占63.4%)是最常见的物种,其次是指间蝗(T. interdigitale, n=38,占18.8%)和趾间蝗(T. indotineae, n=13,占6.4%)。所有的indodoineae分离株最初表型鉴定为趾间T. (n=7)或毛癣T. (n=6)。indotineae引起体癣(n=4, 30.8%)、股癣(n=3, 23.1%)、手癣(n=2, 15.4%)、足癣(n=1, 7.7%)、头癣(n=1, 7.7%)和未指明部位的癣(n=2, 15.4%)。估计indottineae的患病率为0.6%[95%置信区间(CI) 0.3-1.0]。indottineae不能用表型方法鉴定,鉴定需要ITS测序。虽然在这里显然不常见,但需要进一步的研究来更准确地确定在不同种群中遇到这种重要物种的可能性。
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引用次数: 0
Next-generation karyotyping using optical genome mapping: a comparative study of genomic changes in haematological malignancies 使用光学基因组作图的下一代核型:血液恶性肿瘤基因组变化的比较研究。
IF 3 3区 医学 Q1 PATHOLOGY Pub Date : 2025-05-17 DOI: 10.1016/j.pathol.2025.03.009
Anoop K. Enjeti , Katie Ashton , Nadine Berry , Eva Chan , Ashleigh Fodeades , Andrew Ziolkowski , Rodney J. Scott
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引用次数: 0
Diluting high lipoprotein(a) concentration samples to determine high results by molar immunoassay is challenging and likely matrix dependent 通过摩尔免疫分析法稀释高脂蛋白(a)浓度样品以确定高结果是具有挑战性的,并且可能依赖于基质。
IF 3 3区 医学 Q1 PATHOLOGY Pub Date : 2025-05-17 DOI: 10.1016/j.pathol.2025.03.010
Caroline A.E. Bachmeier , Alex C. Dechavez , Chantelle Ebersohn , Ben Teis , Greg Ward , Lee Price
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引用次数: 0
Oncogenic mutations of clinical significance in colorectal cancer 结直肠癌致瘤突变的临床意义。
IF 3.6 3区 医学 Q1 PATHOLOGY Pub Date : 2025-05-13 DOI: 10.1016/j.pathol.2025.05.001
Vivienne Lea , Stephanie Hui-Su Lim , Cheok Soon Lee
Colorectal cancer (CRC) is associated with significant morbidity and mortality. Three molecular carcinogenesis pathways have been identified in CRC: chromosomal instability, microsatellite instability (MSI), and CpG island methylator phenotype. Next-generation sequencing is increasingly used in standard clinical practice to identify patients with potentially actionable mutations. Tumour biomarker expression is driving therapeutic decision-making in the treatment of metastatic CRC, with implications for both initial systemic therapy as well as subsequent treatments. Pathologists are playing an increasing role in the identification of mutations with prognostic and predictive value. Currently, testing for deficient mismatch repair/MSI, extended RAS testing, and BRAF status is recommended in all patients at the time of metastatic CRC diagnosis. This review discusses the molecular pathology of CRC including emerging potential therapeutic targets based on molecular testing.
结直肠癌(CRC)与显著的发病率和死亡率相关。在结直肠癌中已经确定了三种分子致癌途径:染色体不稳定性、微卫星不稳定性(MSI)和CpG岛甲基化表型。新一代测序越来越多地用于标准临床实践,以识别具有潜在可操作突变的患者。肿瘤生物标志物的表达正在推动转移性结直肠癌治疗的治疗决策,对初始全身治疗和后续治疗都有影响。病理学家在识别具有预后和预测价值的突变方面发挥着越来越大的作用。目前,在转移性结直肠癌诊断时,建议所有患者检测缺陷错配修复/MSI、扩展RAS检测和BRAF状态。本文综述了结直肠癌的分子病理学,包括基于分子检测的潜在治疗靶点。
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引用次数: 0
Trekking through the emergence of linezolid-resistant Enterococcus faecalis in Tasmania 徒步穿越塔斯马尼亚州出现的耐利奈唑胺粪肠球菌。
IF 3.6 3区 医学 Q1 PATHOLOGY Pub Date : 2025-05-06 DOI: 10.1016/j.pathol.2025.03.007
I-Ly Joanna Chua , Jia Qi Beh , Christopher H. Connor , Jessica Webb , Tara Anderson , Norelle Sherry , Louise Cooley , Benjamin Howden
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引用次数: 0
What to think about when it's not Helicobacter pylori 如果不是幽门螺杆菌,该怎么办?
IF 3.6 3区 医学 Q1 PATHOLOGY Pub Date : 2025-05-06 DOI: 10.1016/j.pathol.2025.03.006
Erika Hissong , Rhonda K. Yantiss
Gastric biopsies can be diagnostically challenging, particularly when evaluating inflammatory conditions beyond the settings of Helicobacter pylori gastritis and autoimmune gastritis. Recognition of specific morphological features associated with diagnostic entities can help identify less common causes of gastritis that might require different therapeutic interventions. Chemical (or reactive) gastropathy is another category of stomach injury that is associated with a broad differential, which may be narrowed, provided specific histological features are identified. Herein, we review features that may assist in identifying the culprit of gastric mucosal injury. Ultimately, pathologists must pay close attention to the composition of inflammation, distribution within the mucosa, and the severity and site of gastric injury.
胃活检在诊断上具有挑战性,特别是在评估幽门螺杆菌胃炎和自身免疫性胃炎以外的炎症条件时。识别与诊断实体相关的特定形态学特征可以帮助识别不太常见的胃炎原因,这些原因可能需要不同的治疗干预。化学性(或反应性)胃病是另一类胃损伤,与广泛的鉴别相关,如果确定了特定的组织学特征,则可以缩小鉴别范围。在此,我们回顾可能有助于识别胃粘膜损伤的罪魁祸首的特征。最后,病理学家必须密切关注炎症的组成、粘膜内的分布、胃损伤的严重程度和部位。
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引用次数: 0
STAT3-mutated NK large granular lymphocytic leukaemia masquerading as myelodysplastic neoplasm stat3突变的NK大颗粒淋巴细胞白血病伪装成骨髓增生异常肿瘤。
IF 3.6 3区 医学 Q1 PATHOLOGY Pub Date : 2025-05-03 DOI: 10.1016/j.pathol.2025.03.004
Jun Yen Ng , Danielle Edwards , Melanie D'Souza , Philip Choi
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引用次数: 0
High proportion of clinically significant prostate adenocarcinomas in radical cystoprostatectomy specimens following complete prostate sampling 完全前列腺取样后根治性膀胱前列腺切除术标本中高比例的临床显著性前列腺腺癌。
IF 3 3区 医学 Q1 PATHOLOGY Pub Date : 2025-05-02 DOI: 10.1016/j.pathol.2025.03.005
Brett Delahunt , Shulammite Johannsen , Lars Egevad , John W. Yaxley , Ian K. Le Fevre , Joanna L. Perry-Keene , Geoffrey Coughlin , Hemamali Samaratunga
Clinically silent prostate adenocarcinoma may be detected as an incidental finding in radical cystoprostatectomy specimens. In previous studies, there have been major inconsistencies, both in the incidence of occult prostate adenocarcinoma, ranging from 2% to 60% of cases in reported series, and their significance in a clinical context. Much of the conflicting data in earlier studies relate ​to methodological issues such as small sample size, incomplete sampling of the prostate and lack of central review of pathological material. In this study, we have reviewed a series of 261 patients who underwent cystoprostatectomy for urothelial carcinoma, between the inclusive years 2010 and 2022, in order to determine the incidence and clinical significance of any prostate carcinomas discovered as part of the histological examination. All prostate glands in the series were fully embedded with sections taken from each block, and all cases were independently reviewed. The series contained 140 occult carcinomas, with the distribution according to patient age being 40–49 years (3 cases), 50–59 years (11 cases), 60–69 years (48 cases), 70–79 years (67 cases) ​and 80–89 years (11 cases). Within the age cohorts of 50–59 years, 60–69 years and 70–79 years, 34.1%, 53.9% and 57.7% of prostates, respectively, had prostate adenocarcinoma. Division of tumours according to Gleason score showed 3+3=6 (31.4%), 3+4=7 (47.9%), 4+3=7 (10%), 3+4=7 tertiary 5 (3.6%), 4+5=9 (5%) and 5+4=9 (2.1%). Clinically significant features were a Gleason score >6 in 68.8% of cases ​and a tumour volume >0.5 ​cm3 in 37.1% of cases. Both features were present in 37.1% of cases. Extension beyond the prostate was seen in nine cases. Our series shows that prostate adenocarcinoma is a common incidental finding in patients undergoing radical cystoprostatectomy, with many tumours having features associated with more aggressive disease. These results suggest that clinical assessment for prostate cancer and pre-operative multiparametric magnetic resonance imaging of the prostate should be undertaken, especially for patients in whom a more conservative surgical approach is planned.
临床无症状的前列腺癌可能在根治性膀胱前列腺切除术标本中偶然发现。在以往的研究中,无论是在隐蔽性前列腺癌的发病率(在报道的系列病例中占2%至60%),还是在临床背景下的意义上,都存在重大的不一致。早期研究中许多相互矛盾的数据与方法学问题有关,如样本量小、前列腺样本不完整以及缺乏病理材料的中心综述。在本研究中,我们回顾了2010年至2022年间261例因尿路上皮癌接受膀胱前列腺切除术的患者,以确定组织学检查中发现的任何前列腺癌的发病率和临床意义。该系列的所有前列腺都被从每个块上取下切片,并被完全嵌入,所有病例都被独立审查。本研究共发现隐蔽性癌140例,按患者年龄分布为40-49岁3例、50-59岁11例、60-69岁48例、70-79岁67例、80-89岁11例。在50-59岁、60-69岁和70-79岁年龄组中,前列腺癌发生率分别为34.1%、53.9%和57.7%。肿瘤按Gleason评分分为3+3=6(31.4%)、3+4=7(47.9%)、4+3=7(10%)、3+4=7(3.6%)、4+5=9(5%)、5+4=9(2.1%)。临床显著特征为68.8%的病例Gleason评分为bb0.6, 37.1%的病例肿瘤体积为>0.5 cm3。37.1%的病例同时存在这两种特征。前列腺外延伸9例。我们的研究表明,前列腺癌是根治性膀胱前列腺切除术患者常见的偶然发现,许多肿瘤具有与更具侵袭性疾病相关的特征。这些结果表明,对于前列腺癌的临床评估和术前前列腺多参数磁共振成像应该进行,特别是对于那些计划更保守的手术入路的患者。
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引用次数: 0
Low rate of follow-up testing for patients with hypophosphataemia 低磷血症患者随访检测率低。
IF 3.6 3区 医学 Q1 PATHOLOGY Pub Date : 2025-04-26 DOI: 10.1016/j.pathol.2025.02.013
Rachel J.M. Dennis , William M. McConnell , Paul Glendenning
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引用次数: 0
Clinicopathological characteristics of ALK-rearranged mesothelioma: a report of three cases alk重排间皮瘤的临床病理特征:附3例报告。
IF 3.6 3区 医学 Q1 PATHOLOGY Pub Date : 2025-04-26 DOI: 10.1016/j.pathol.2025.03.003
Yan Li , Yina Liu , Xue Chao , Yangfan He , Zhongsheng Chen , Yue Li , Lili Liu
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引用次数: 0
期刊
Pathology
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