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Identification and pathogenicity of Colletotrichum species associated with twig dieback of citrus in Western Australia 西澳大利亚柑橘枝干枯萎病相关 Colletotrichum 菌种的鉴定和致病性
IF 2.7 3区 农林科学 Q1 AGRONOMY Pub Date : 2024-03-04 DOI: 10.1111/ppa.13888
Weixia Wang, Andrew S. Taylor, Eden Tongson, Jacqueline Edwards, Niloofar Vaghefi, Peter K. Ades, Pedro W. Crous, Paul W. J. Taylor
Up to 32 Colletotrichum species have been reported to be associated with pre‐ or postharvest diseases of citrus globally, while in Australia, six species have been reported to cause citrus leaf and fruit disease. Twig or shoot dieback has recently been observed as an emerging disease in citrus orchards in Western Australia. Colletotrichum species were isolated from diseased twigs showing dieback (withertip) or lesions, with or without gummosis, collected from 12 varieties of orange, mandarin and lemon. Colletotrichum gloeosporioides sensu stricto, Colletotrichum karstii and Colletotrichum novae‐zelandiae were identified using a polyphasic approach that included multigene phylogenetic analysis using sequences of internal transcribed spacer and intervening 5.8S nrDNA (ITS), glyceraldehyde‐3‐phosphate dehydrogenase (gapdh), β‐tubulin (tub2), actin (act) and histone (his3) for isolates in the boninense species complex, and Apn2–Mat1–2 intergenic spacer and partial mating type (Mat1–2) (ApMat) and glutamine synthetase (gs) for isolates in the gloeosporioides species complex, as well as morphological characteristics. C. gloeosporioides was the most prevalent species associated with twig dieback in Western Australia, while C. novae‐zelandiae was reported for the first time in Australia. Pathogenicity tests on shoot twigs from lemon and orange trees confirmed C. gloeosporioides, C. karstii and C. novae‐zelandiae as the cause of twig dieback, with C. gloeosporioides being the most aggressive species. Knowledge of the species causing twig dieback and their lifestyle will assist the development of integrated control methods.
据报道,全球有多达 32 种 Colletotrichum 与柑橘采前或采后病害有关,而在澳大利亚,据报道有 6 种 Colletotrichum 可导致柑橘叶片和果实病害。最近,在西澳大利亚的柑橘果园中发现了一种新出现的病害--枝干或嫩枝枯萎病。从 12 个橙子、柑橘和柠檬品种中采集到的出现枯枝(枯梢)或病变的病枝上分离出了 Colletotrichum 菌种,这些病枝或病变伴有或不伴有牙龈病。采用多相方法,包括利用内部转录间隔序列和中间的 5.8S nrDNA(IRNA)进行多基因系统发生分析,确定了严格意义上的球孢子菌、喀斯特球孢子菌和新泽兰球孢子菌。通过多基因系统发育分析,确定了鲣节孢属种群中的分离物的 8S nrDNA(ITS)、甘油醛-3-磷酸脱氢酶(gapdh)、β-微管蛋白(tub2)、肌动蛋白(act)和组蛋白(his3)序列,以及球孢属种群中的分离物的 Apn2-Mat1-2 基因间距和部分交配型(Mat1-2)(ApMat)和谷氨酰胺合成酶(gs)序列,以及形态特征。C. gloeosporioides 是西澳大利亚州与树枝枯萎病相关的最常见物种,而 C. novae-zelandiae 则是首次在澳大利亚报道。对柠檬树和橘子树的嫩枝进行的致病性试验证实,C. gloeosporioides、C. karstii 和 C. novae-zelandiae 是枝枯病的病原菌,其中 C. gloeosporioides 的侵袭性最强。了解导致枝干枯萎的物种及其生活方式将有助于开发综合防治方法。
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引用次数: 0
Pre‐infection efficacy of resistance inducers against grapevine powdery mildew 抗性诱导剂对葡萄白粉病的感染前功效
IF 2.7 3区 农林科学 Q1 AGRONOMY Pub Date : 2024-02-29 DOI: 10.1111/ppa.13886
Othmane Taibi, Giorgia Fedele, Vittorio Rossi
Plant resistance inducers (PRIs) are of increasing interest for disease control in sustainable viticulture, but their efficacy in vineyards is still under investigation. We studied the effects of four commercial PRIs, of natural and microbial origin, on the development of powdery mildew (PM) on grapevine leaves over a 3‐year period. Disease and sporulation severity were evaluated following the artificial inoculation of PRI‐treated leaves with Erysiphe necator conidia at 1, 3, 7 and 12 days after treatment (DAT). Laminarin (LAM) and cos‐oga (COS) were the most effective in reducing both disease (57.1% and 49.5%, respectively) and sporulation (85.3% and 90.2%, respectively) severity; the reduction in PM severity provided by cerevisane (CER) was lower (27%), and that of Pythium oligandrum (PYT) was intermediate (44.9%). LAM was effective from 1 DAT, while COS and PYT were more effective when E. necator was inoculated at 7 to 12 DAT. These results open new perspectives on how PRIs are used as single, preventative interventions performed 1 to 3 days before E. necator infection, depending on the product used. The effect of PRIs on the sporulation of E. necator colonies also suggests a broader and longer effect on PM epidemics.
植物抗性诱导剂(PRIs)在可持续葡萄栽培的病害控制中越来越受到关注,但其在葡萄园中的功效仍在研究之中。我们研究了四种天然和微生物来源的商业 PRI 对葡萄叶片白粉病(PM)发展的影响,为期 3 年。在处理后 1、3、7 和 12 天(DAT),在 PRI 处理过的叶片上人工接种新白粉病菌分生孢子后,对病害和孢子的严重程度进行了评估。在降低病害(分别为 57.1% 和 49.5%)和孢子化(分别为 85.3% 和 90.2%)严重程度方面,氨基甲酸乙酯(LAM)和复方阿糖胞苷(COS)的效果最好;谷维素(CER)对 PM 严重程度的降低率较低(27%),而寡糖百菌清(PYT)的降低率介于两者之间(44.9%)。LAM 从 1 DAT 开始有效,而 COS 和PYT 在 7 至 12 DAT 接种 E. necator 时更有效。这些结果为如何将 PRIs 用作坏死杆菌感染前 1 到 3 天的单一预防性干预措施提供了新的视角,具体取决于所使用的产品。PRIs 对坏死杆菌菌落孢子化的影响还表明,它对 PM 流行病的影响范围更广、时间更长。
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引用次数: 0
Comparative genomics identifies genetic markers linked to structural variations that differentiate Puccinia graminis tritici and secalis formae speciales 比较基因组学确定了与结构变异有关的遗传标记,这些结构变异可区分三联禾谷粉虱和特异禾谷粉虱
IF 2.7 3区 农林科学 Q1 AGRONOMY Pub Date : 2024-02-29 DOI: 10.1111/ppa.13890
Anthony Bryan, Andrey Korolev, Susan Bergmann, Willem H. P. Boshoff, Kerstin Flath, Annemarie F. Justesen, Philipp Schulz, Botma Visser, Diane G. O. Saunders
Stem rust is a serious disease of many gramineous plants including small grain staples such as wheat, barley, rye and triticale. Separate formae speciales (ff. spp.) of the causal fungus, Puccinia graminis, predominantly infect certain host plant genera. However, despite these taxonomic subdivisions, many P. graminis ff. spp. are genetically too similar to distinguish using existing genetic markers. For those infecting cereals, this is particularly challenging for P. graminis f. sp. tritici (Pgt) and P. graminis f. sp. secalis (Pgs). Herein we harnessed newly available genomic data for 39 Pgt and Pgs isolates and identified four regions of structural variation that were used to design four simple PCR‐based assays to distinguish the aforementioned formae speciales. These genomic regions display large presence/absence variation between Pgt and Pgs isolates, and yet a high degree of sequence conservation within shared neighbouring regions, facilitating primer design. We also confirmed lack of amplification in host plant genera analysed, which included assessment of the shared alternate host of Pgt and Pgs, Berberis vulgaris. Accurate classification of P. graminis ff. spp. infections on B. vulgaris is exceptionally valuable to rapidly define plants harbouring P. graminis inoculum when adjacent to cereal crops. Finally, we demonstrated utility of these four genetic markers to correctly distinguish a genetically diverse array of Pgt and Pgs isolates. This strategy could now be readily applied to other pathogens of interest, which will be of increasing value as genomic resources continue to rapidly expand for many key biotic threats to agricultural productivity.
茎锈病是许多禾本科植物的一种严重病害,包括小麦、大麦、黑麦和三粒小麦等主粮。病原真菌禾谷粉孢菌(Puccinia graminis)的特化型(ff. spp.)主要感染某些寄主植物属。然而,尽管有这些分类学上的细分,许多禾谷类真菌ff.属在遗传学上过于相似,无法用现有的遗传标记加以区分。对于感染谷物的禾谷镰刀菌(P. graminis f. sp. tritici,Pgt)和矛孢禾谷镰刀菌(P. graminis f. sp. secalis,Pgs)来说,这尤其具有挑战性。在此,我们利用新近获得的 39 株 Pgt 和 Pgs 分离物的基因组数据,确定了四个结构变异区域,并利用这些区域设计了四种基于 PCR 的简单检测方法来区分上述特殊形态。这些基因组区域在 Pgt 和 Pgs 分离物之间显示出较大的存在/不存在差异,但在共享的邻近区域内序列保存程度较高,有利于引物设计。我们还证实在所分析的寄主植物属中缺乏扩增,其中包括对 Pgt 和 Pgs 的共同交替寄主小檗的评估。对小檗上的禾谷粉虱 ff. spp.感染进行准确分类,对于快速确定邻近谷类作物的禾谷粉虱接种体携带植物非常有价值。最后,我们证明了这四种遗传标记在正确区分基因多样的 Pgt 和 Pgs 分离物方面的效用。这一策略现在可随时应用于其他感兴趣的病原体,随着基因组资源的不断迅速扩大,这一策略的价值也将与日俱增。
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引用次数: 0
The Ralstonia solanacearum effector RipV1 acts as a novel E3 ubiquitin ligase to suppress plant PAMP‐triggered immunity responses and promote susceptibility in potato Ralstonia solanacearum效应子RipV1作为一种新型E3泛素连接酶抑制植物PAMP触发的免疫反应并促进马铃薯的易感性
IF 2.7 3区 农林科学 Q1 AGRONOMY Pub Date : 2024-02-27 DOI: 10.1111/ppa.13885
Dong Cheng, Dan Zhou, Yuqi Wang, Yudan Wang, Huishan Qiu, Xiaodan Tan, Bingsen Wang, Mengshu Huang, Botao Song, Huilan Chen
Bacterial wilt caused by Ralstonia solanacearum is a destructive plant disease, particularly in potato (Solanum tuberosum). R. solanacearum deploys a diverse and potent arsenal of type III effectors to inhibit the plant immune system. However, the understanding of individual effectors promoting susceptibility in host plants and interfering with plant immunity responses is still limited. Here, we demonstrated that the type III effector RipV1 functioned as a novel E3 ubiquitin ligase (NEL) effector and exhibited E3 ubiquitin ligase activity in vitro. Transient expression of RipV1 suppressed plant pathogen‐associated molecular pattern (PAMP)‐triggered immunity (PTI) responses in Nicotiana benthamiana, such as the expression of PTI‐related genes and the reactive oxygen species (ROS) burst. Prolonged expression of RipV1 induced cell death in N. benthamiana leaves. Notably, mutating the conserved cysteine residue of RipV1 abolished its E3 ligase activity and its ability to suppress plant PTI responses. This study also revealed the indispensability of RipV1 for R. solanacearum's full virulence in potato. Transgenic potato plants overexpressing ripV1 but not the catalytic mutant ripV1‐C444A displayed enhanced susceptibility to R. solanacearum. RipV1 was observed to localize specifically to the plant plasma membrane, with its N‐terminus being pivotal in determining this localization. These findings showcase that RipV1 acts as a NEL effector and contributes to R. solanacearum virulence by suppressing plant PTI responses through its E3 activity.
由 Ralstonia solanacearum 引起的细菌枯萎病是一种破坏性植物病害,尤其是马铃薯(Solanum tuberosum)。R. solanacearum 部署了多种有效的 III 型效应物来抑制植物免疫系统。然而,人们对促进寄主植物易感性和干扰植物免疫反应的单个效应因子的了解仍然有限。在这里,我们证明了 III 型效应物 RipV1 作为一种新型 E3 泛素连接酶(NEL)效应物,在体外表现出 E3 泛素连接酶活性。RipV1 的瞬时表达抑制了烟曲霉中植物病原体相关分子模式(PAMP)触发的免疫(PTI)反应,如 PTI 相关基因的表达和活性氧(ROS)猝灭。RipV1 的长期表达会诱导 N. benthamiana 叶子中的细胞死亡。值得注意的是,突变 RipV1 的保守半胱氨酸残基会削弱其 E3 连接酶活性及其抑制植物 PTI 反应的能力。这项研究还揭示了 R. solanacearum 在马铃薯中的全面毒力离不开 RipV1。过表达 ripV1 而非催化突变体 ripV1-C444A 的转基因马铃薯植株对 R. solanacearum 的易感性增强。据观察,RipV1 能特异性地定位在植物质膜上,其 N 端是决定这种定位的关键。这些研究结果表明,RipV1 是一种 NEL 效应子,通过其 E3 活性抑制植物 PTI 反应,从而增强了茄枯菌的毒力。
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引用次数: 0
A new genus and species of Cryphonectriaceae causing stem cankers on plantation eucalypts in South Africa 导致南非种植园桉树茎干溃疡病的 Cryphonectriaceae 新属和新种
IF 2.7 3区 农林科学 Q1 AGRONOMY Pub Date : 2024-02-25 DOI: 10.1111/ppa.13883
Hiroyuki Suzuki, Seonju Marincowitz, Jolanda Roux, Trudy Paap, Brenda D. Wingfield, Michael J. Wingfield
Fungi in the Cryphonectriaceae are important canker pathogens of woody shrubs and trees in the Melastomataceae and Myrtaceae (Myrtales). During 2021 disease surveys in KwaZulu-Natal (South Africa) plantations, a serious stem canker disease was discovered on species of Eucalyptus and Corymbia. The cankers had structures on their surfaces typical of fungi in the Cryphonectriaceae. The aims of the study were to identify the fungus associated with the disease and to test its pathogenicity. Morphological characteristics of both sexual and asexual structures and phylogenetic analyses based on partial sequences of the conserved nuclear large subunit (LSU) ribosomal DNA, the internal transcribed spacer (ITS) regions including the 5.8S gene of the ribosomal DNA operon, and two β-tubulin (BT1/BT2) regions were used for identification purposes. Phylogenetic analyses of the sequence data and morphological characteristics supported the establishment of a new genus in the Cryphonectriaceae, for which the name Xanthoporthe myrticola gen. et sp. nov. is provided. Pathogenicity trials showed that isolates were pathogenic on tested Eucalyptus grandis and hybrids as well as Corymbia henryi. The results suggest that this is an emerging pathogen that could influence the sustainability of plantation forestry in South Africa.
Cryphonectriaceae 真菌是 Melastomataceae 和 Myrtaceae(桃金娘科)木本灌木和树木的重要腐烂病病原体。2021 年在夸祖鲁-纳塔尔(南非)种植园进行病害调查时,在桉树和堇菜树种上发现了一种严重的茎腐病。茎腐病的表面具有典型的 Cryphonectriaceae 真菌的结构。研究的目的是确定与该病有关的真菌并测试其致病性。研究人员利用有性和无性结构的形态学特征,以及基于核大亚基(LSU)核糖体 DNA、内部转录间隔区(ITS)(包括核糖体 DNA 操作子的 5.8S 基因)和两个 β-管蛋白(BT1/BT2)区域的部分序列的系统发生学分析,来进行鉴定。序列数据和形态特征的系统发育分析支持在 Cryphonectriaceae 中建立一个新属,并将其命名为 Xanthoporthe myrticola gen.致病性试验表明,分离物对测试的大叶桉和杂交种以及鸡冠花具有致病性。结果表明,这是一种新出现的病原体,可能会影响南非人工林的可持续性。
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引用次数: 0
Passionfruit severe leaf distortion virus: Expanded host range, response of Passiflora spp. plants to infection and transmission by Bemisia tabaciMEAM1 西番莲严重花叶扭曲病毒:扩大寄主范围、西番莲属植物对 Bemisia tabaciMEAM1 感染和传播的反应
IF 2.7 3区 农林科学 Q1 AGRONOMY Pub Date : 2024-02-23 DOI: 10.1111/ppa.13881
Gressa Amanda Chinelato, Gabriel Madoglio Favara, Camila Geovana Ferro, Vinicius Henrique Bello, Felipe Franco de Oliveira, Heron Delgado Kraide, David Marques de Almeida Spadotti, Nilton Tadeu Vilela Junqueira, Jorge Alberto Marques Rezende
Passionfruit severe leaf distortion virus (PSLDV) is a begomovirus transmitted by Bemisia tabaci Middle East‐Asia Minor 1 (MEAM1), associated with severe disease in passion flowers. This study aimed to evaluate the reaction of plants of different species of Passiflora to infection with PSLDV, expand the known host range of the virus and determine the minimum virus acquisition and inoculation access periods and the time of virus retention by B. tabaci MEAM1. Plants of Passiflora cincinnata, P. mucronata and P. malacophylla were not infected with PSLDV through transmission with B. tabaci MEAM1. When healthy plants of these species were fork grafted onto PSLDV‐infected plants of P. edulis, only plants of P. malacophylla remained uninfected and the virus was not detected by PCR, suggesting immunity to this begomovirus. Plants of Datura stramonium, Nicotiana benthamiana, N. clevelandii, N. tabacum ‘Xanthi’, Solanum lycopersicum (tomato cv. Compack) and several varieties of Manihot esculenta (cassava cvs IAC 118‐96, IAC 6‐01, Paranavaí, IAC 576, IAC 90 and IAC 14) were susceptible to infection with PSLDV through transmission with B. tabaci MEAM1. Adults of B. tabaci MEAM1 acquired PSLDV after 1 h of feeding on PSLDV‐infected plants of D. stramonium. They transmitted the virus to healthy plants after feeding on these plants for 1 h, although with low transmission rates. The retention time of PSLDV in the vector was 14 days.
西番莲严重叶片畸形病毒(PSLDV)是一种乞巧病毒,由烟草小蜂中东-亚洲1号(MEAM1)传播,与西番莲的严重病害有关。本研究旨在评估不同品种西番莲植株对 PSLDV 感染的反应,扩大该病毒的已知宿主范围,并确定 B. tabaci MEAM1 获得病毒和接种的最短时间以及病毒滞留的时间。西番莲(Passiflora cincinnata)、西番莲(P. mucronata)和西番莲(P. malacophylla)的植株没有通过虎斑蝶 MEAM1 的传播感染 PSLDV。当把这些物种的健康植株叉嫁到受 PSLDV 感染的西番莲植株上时,只有 P. malacophylla 的植株未受感染,PCR 也未检测到病毒,这表明这些植株对这种begomovirus 病毒具有免疫力。曼陀罗(Datura stramonium)、烟草(Nicotiana benthamiana)、N. clevelandii、N. tabacum 'Xanthi'、番茄(Solanum lycopersicum)(番茄变种 Compack)和 Manihot esculenta 的几个变种(木薯变种 IAC 118-96、IAC 6-01、Paranavaí、IAC 576、IAC 90 和 IAC 14)的植株通过 B. tabaci MEAM1 的传播易受 PSLDV 感染。B. tabaci MEAM1 的成虫取食受 PSLDV 感染的 D. stramonium 植物 1 小时后就会感染 PSLDV。它们在健康植株上取食 1 小时后将病毒传播给这些植株,但传播率很低。PSLDV 在载体中的存留时间为 14 天。
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引用次数: 0
Phylogenetic, metabolic and pathogenic characteristics of Alternaria alternata strains from wheat in China 中国小麦交替孢霉菌株的系统发育、代谢和致病特征
IF 2.7 3区 农林科学 Q1 AGRONOMY Pub Date : 2024-02-23 DOI: 10.1111/ppa.13880
Shouning Qiao, Hui Gu, Guizhen Ma, Jianhong Xu, Jianrong Shi, Yin‐Won Lee, Jianbo Qiu
Alternaria is an important toxigenic fungal genus endangering the quality of cereal grains. No data are available in the literature regarding the composition of Alternaria species in wheat from the main wheat‐cultivating regions of China. In this study, a total of 282 strains were isolated from wheat kernels collected in various provinces. Phylogenetic characterization was performed using two informative loci, ASA10 and ASA19, demonstrating that all strains belonged to A. alternata. A low molecular diversity was observed, which did not appear to be influenced by geographic origin. The secondary metabolite profile of the strains was evaluated in rice culture. Altertoxin I was synthesized at a high concentration by the majority of the strains, while the accumulation of altenuene was lower in both frequency and level than that of alternariol and its derivative. A. alternata did not cause readily observable symptoms on wheat spikes after spraying of the conidia at anthesis, but a higher quantity of altertoxin I and Alternaria DNA were detected in inoculated grains. Artificial inoculations of apple fruit showed that all examined strains were capable of causing typical rot symptoms and producing all four toxins to a certain degree. The widespread occurrence of A. alternata on wheat grains and its ability to synthesize various toxic metabolites may pose a serious hazard for both growers and consumers.
交替孢属真菌是危害谷物品质的重要致毒真菌属。关于中国主要小麦种植区小麦中 Alternaria 菌种的组成,目前尚无相关文献数据。本研究从不同省份采集的小麦籽粒中分离出 282 株菌株。利用 ASA10 和 ASA19 这两个信息位点进行了系统发育鉴定,结果表明所有菌株均属于交替孢霉。分子多样性较低,似乎不受地理来源的影响。在水稻培养中对菌株的次生代谢物概况进行了评估。大多数菌株都合成了高浓度的变异毒素 I,而赤霉烯的积累频率和水平均低于交替二醇及其衍生物。在小麦花期喷洒分生孢子后,交替孢霉不会在麦穗上造成明显的症状,但在接种的麦粒中检测到了较多的交替毒素 I 和交替孢霉 DNA。苹果果实的人工接种表明,所有受检菌株都能引起典型的腐烂症状,并在一定程度上产生四种毒素。交替孢霉在麦粒上的广泛存在及其合成各种有毒代谢物的能力可能会对种植者和消费者造成严重危害。
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引用次数: 0
Barley powdery mildew control in Western Australia and beyond 西澳大利亚及其他地区的大麦白粉病防治工作
IF 2.7 3区 农林科学 Q1 AGRONOMY Pub Date : 2024-02-23 DOI: 10.1111/ppa.13884
Simon R. Ellwood, Francisco J. Lopez‐Ruiz, Kar‐Chun Tan
Australia is one of the largest barley exporters in the world, with Western Australia accounting for some 40% of national production. The crop is predominantly grown in the south and south‐west of the state in winter and spring, where temperate conditions and higher rainfall levels are more suited to barley than northern and eastern regions. Between 2007 and 2013, prolonged outbreaks of barley powdery mildew (BPM) occurred. This was brought about by a combination of the extensive use of susceptible cultivars and an over‐reliance on a small number of single mode‐of‐action demethylation inhibitor fungicides, which select for mutations in the C14α‐demethylase (Cyp51A) gene. This review highlights the steps taken to reduce losses to BPM, breeding efforts to introduce resistance into cultivars and the success of pre‐breeding research to find new and durable resistance genes. We also draw comparisons with powdery mildew in Australian wheat, where similar factors are leading to substantial outbreaks.
澳大利亚是世界上最大的大麦出口国之一,其中西澳大利亚州的大麦产量约占全国产量的 40%。大麦主要种植在该州南部和西南部的冬季和春季,那里气候温和,降雨量较高,比北部和东部地区更适合大麦生长。2007 年至 2013 年期间,大麦白粉病 (BPM) 长期爆发。这是由于大量使用易感栽培品种和过度依赖少量单一作用方式的去甲基化抑制剂杀菌剂造成的,这些杀菌剂会选择C14α-去甲基化酶(Cyp51A)基因的突变。本综述重点介绍了为减少 BPM 损失而采取的措施、在栽培品种中引入抗性的育种工作,以及为寻找新的持久抗性基因而进行的育种前研究取得的成功。我们还将其与澳大利亚小麦白粉病进行了比较,澳大利亚小麦白粉病也是由类似因素导致大量爆发的。
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引用次数: 0
Optimization of concentration parameters for maximizing bacteriophage recovery value using response surface methodology: A case study on determining the optimal concentration parameters for Erwinia amylovoraEA1T1.B3 phage 利用响应面方法优化浓度参数,使噬菌体回收值最大化:确定 Erwinia amylovoraEA1T1.B3 噬菌体最佳浓度参数的案例研究
IF 2.7 3区 农林科学 Q1 AGRONOMY Pub Date : 2024-02-22 DOI: 10.1111/ppa.13882
Kubra Guven, Esra Ekiz, Eylul Evran, Emine Kubra Tayyarcan, Ismail Hakki Boyaci
Bacteriophages have emerged as effective antimicrobial agents in combating pathogenic bacteria. To successfully apply phages in real‐life scenarios, it is crucial to optimize their large‐scale production, concentration and purification processes. In this study, our objective was to optimize the phage concentration parameters with a high recovery rate within a shorter time and minimum chemical consumption. We isolated and characterized a specific Erwinia amylovora phage. Subsequently, we employed response surface methodology (RSM) combined with a three‐factor central composite design to optimize the phage recovery. The factors considered were polyethylene glycol (PEG) concentration, NaCl concentration and incubation time. The optimized values for PEG, NaCl and incubation time, which resulted in a maximum recovery rate of 85.37%, were determined as 18%, 2.38 M and 0 h, respectively. This finding indicates that the concentration step, which traditionally took up to 18 h with a recovery rate of 65%, can now be accomplished in a significantly shorter time with an improved recovery rate. Our study demonstrates the effectiveness of RSM to identify the optimum conditions for phage precipitation. This approach allows for the rapid and efficient design of precipitation protocols tailored to specific bacteriophages, resulting in shorter processing times and higher recovery rates.
噬菌体已成为对抗致病细菌的有效抗菌剂。要在实际生活中成功应用噬菌体,优化其大规模生产、浓缩和纯化过程至关重要。在本研究中,我们的目标是优化噬菌体浓缩参数,在更短的时间内实现高回收率和最低化学消耗。我们分离并鉴定了一种特异性 Erwinia amylovora 噬菌体。随后,我们采用响应面方法(RSM)结合三因素中心复合设计来优化噬菌体的回收率。考虑的因素包括聚乙二醇(PEG)浓度、NaCl 浓度和培养时间。PEG 浓度、NaCl 浓度和培养时间的优化值分别为 18%、2.38 M 和 0 h,最大回收率为 85.37%。这一结果表明,传统上需要长达 18 小时的浓缩步骤(回收率为 65%)现在可以在更短的时间内完成,同时提高回收率。我们的研究证明了 RSM 在确定噬菌体沉淀最佳条件方面的有效性。这种方法可以快速有效地设计出适合特定噬菌体的沉淀方案,从而缩短处理时间,提高回收率。
{"title":"Optimization of concentration parameters for maximizing bacteriophage recovery value using response surface methodology: A case study on determining the optimal concentration parameters for Erwinia amylovoraEA1T1.B3 phage","authors":"Kubra Guven, Esra Ekiz, Eylul Evran, Emine Kubra Tayyarcan, Ismail Hakki Boyaci","doi":"10.1111/ppa.13882","DOIUrl":"https://doi.org/10.1111/ppa.13882","url":null,"abstract":"Bacteriophages have emerged as effective antimicrobial agents in combating pathogenic bacteria. To successfully apply phages in real‐life scenarios, it is crucial to optimize their large‐scale production, concentration and purification processes. In this study, our objective was to optimize the phage concentration parameters with a high recovery rate within a shorter time and minimum chemical consumption. We isolated and characterized a specific <jats:italic>Erwinia amylovora</jats:italic> phage. Subsequently, we employed response surface methodology (RSM) combined with a three‐factor central composite design to optimize the phage recovery. The factors considered were polyethylene glycol (PEG) concentration, NaCl concentration and incubation time. The optimized values for PEG, NaCl and incubation time, which resulted in a maximum recovery rate of 85.37%, were determined as 18%, 2.38 M and 0 h, respectively. This finding indicates that the concentration step, which traditionally took up to 18 h with a recovery rate of 65%, can now be accomplished in a significantly shorter time with an improved recovery rate. Our study demonstrates the effectiveness of RSM to identify the optimum conditions for phage precipitation. This approach allows for the rapid and efficient design of precipitation protocols tailored to specific bacteriophages, resulting in shorter processing times and higher recovery rates.","PeriodicalId":20075,"journal":{"name":"Plant Pathology","volume":"59 1","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139950413","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diversity of Colletotrichum causing anthracnose on Psidium guajava in varied Brazilian physiographic regions 巴西不同地貌区引起番石榴炭疽病的 Colletotrichum 的多样性
IF 2.7 3区 农林科学 Q1 AGRONOMY Pub Date : 2024-02-17 DOI: 10.1111/ppa.13879
William R. O. Soares, Willie A. S. Vieira, Ailton Reis, Robert N. G. Miller, Maria D. M. Santos, Érica de Castro Costa, Marcos P. S. Câmara, Adalberto C. Café-Filho
Anthracnose, caused by several Colletotrichum species, is a major restricting factor for guava production, but no comprehensive study of the causal agent has been conducted from the plant host centre of diversity. This work characterizes isolates from guava, mainly from the fruit, but also leaves and flowers, representing most Brazilian physiographies according to the partial sequences of the rDNA-ITS, ApMAT, TUB2, HIS3 and GAPDH gene regions. In addition, the pathogenicity and aggressiveness to fruits of two widely planted guava varieties (SLG and RM) are described. Guava-derived Colletotrichum isolates were found in five complexes: gloeosporioides, acutatum, boninense, gigasporum and orchidearum. The gloeosporioides complex was the most prevalent (81%), followed by the acutatum complex (14%). A total of 16 Colletotrichum species were naturally associated with guava anthracnose: C. aeschynomenes, C. asianum, C. chrysophilum, C. fructicola, C. gigasporum, C. gloeosporioides, C. karsti, C. melonis, C. musae, C. nymphaeae, C. paranaense, C. siamense, C. sojae, C. syzygicola, C. theobromicola and C. tropicale. Apart from C. nymphaeae and C. gloeosporioides, all the remaining 14 taxa are reported for the first time in P. guajava. The most aggressive species belonged to the C. gloeosporioides complex. C. siamense was the most prevalent, especially in warmer regions, followed by C. chrysophilum, mostly in temperate environments. The most aggressive species were C. siamense, C. chrysophilum, C. fructicola and C. tropicale. Fruits of the variety SLG were consistently more resistant to anthracnose than the fruits of RM.
由多种 Colletotrichum 引起的炭疽病是番石榴生产的主要限制因素,但尚未从植物寄主的多样性中心对病原进行过全面研究。这项工作根据 rDNA-ITS、ApMAT、TUB2、HIS3 和 GAPDH 基因区的部分序列,描述了从番石榴中分离出的病原菌的特征,这些病原菌主要来自果实,也有叶片和花朵,代表了巴西大部分的生理特征。此外,还介绍了两种广泛种植的番石榴品种(SLG 和 RM)的致病性和对果实的侵袭性。在五个复合体中发现了来自番石榴的 Colletotrichum 分离物:gloeosporioides、acutatum、boninense、gigasporum 和 orchidearum。最常见的是钩孢属复合体(81%),其次是尖孢属复合体(14%)。与番石榴炭疽病自然相关的 Colletotrichum 种类共有 16 种:C. aeschynomenes、C. asianum、C. chrysophilum、C. fructicola、C. gigasporum、C. gloeosporioides、C. karsti、C. melonis、C. musae、C. nymphaeae、C. paranaense、C. siamense、C. sojae、C. syzygicola、C. theobromicola 和 C. tropicale。除了 C. nymphaeae 和 C. gloeosporioides 外,其余 14 个分类群都是首次在番石榴中发现。最具攻击性的物种属于 C. gloeosporioides 复合体。C. siamense最为普遍,尤其是在温暖地区,其次是 C. chrysophilum,主要在温带环境中。最具侵袭性的种类是 C. siamense、C. chrysophilum、C. fructicola 和 C. tropicale。品种 SLG 的果实对炭疽病的抗性一直高于 RM 的果实。
{"title":"Diversity of Colletotrichum causing anthracnose on Psidium guajava in varied Brazilian physiographic regions","authors":"William R. O. Soares, Willie A. S. Vieira, Ailton Reis, Robert N. G. Miller, Maria D. M. Santos, Érica de Castro Costa, Marcos P. S. Câmara, Adalberto C. Café-Filho","doi":"10.1111/ppa.13879","DOIUrl":"https://doi.org/10.1111/ppa.13879","url":null,"abstract":"Anthracnose, caused by several <i>Colletotrichum</i> species, is a major restricting factor for guava production, but no comprehensive study of the causal agent has been conducted from the plant host centre of diversity. This work characterizes isolates from guava, mainly from the fruit, but also leaves and flowers, representing most Brazilian physiographies according to the partial sequences of the rDNA-ITS, <i>ApMAT</i>, <i>TUB2</i>, <i>HIS3</i> and <i>GAPDH</i> gene regions. In addition, the pathogenicity and aggressiveness to fruits of two widely planted guava varieties (SLG and RM) are described. Guava-derived <i>Colletotrichum</i> isolates were found in five complexes: gloeosporioides, acutatum, boninense, gigasporum and orchidearum. The gloeosporioides complex was the most prevalent (81%), followed by the acutatum complex (14%). A total of 16 <i>Colletotrichum</i> species were naturally associated with guava anthracnose: <i>C</i>. <i>aeschynomenes</i>, <i>C</i>. <i>asianum</i>, <i>C</i>. <i>chrysophilum</i>, <i>C</i>. <i>fructicola</i>, <i>C</i>. <i>gigasporum</i>, <i>C</i>. <i>gloeosporioides</i>, <i>C</i>. <i>karsti</i>, <i>C</i>. <i>melonis</i>, <i>C</i>. <i>musae</i>, <i>C</i>. <i>nymphaeae</i>, <i>C</i>. <i>paranaense</i>, <i>C</i>. <i>siamense</i>, <i>C</i>. <i>sojae</i>, <i>C</i>. <i>syzygicola</i>, <i>C</i>. <i>theobromicola</i> and <i>C</i>. <i>tropicale</i>. Apart from <i>C</i>. <i>nymphaeae</i> and <i>C</i>. <i>gloeosporioides</i>, all the remaining 14 taxa are reported for the first time in <i>P</i>. <i>guajava</i>. The most aggressive species belonged to the <i>C</i>. <i>gloeosporioides</i> complex. <i>C</i>. <i>siamense</i> was the most prevalent, especially in warmer regions, followed by <i>C</i>. <i>chrysophilum</i>, mostly in temperate environments. The most aggressive species were <i>C</i>. <i>siamense</i>, <i>C</i>. <i>chrysophilum</i>, <i>C</i>. <i>fructicola</i> and <i>C</i>. <i>tropicale</i>. Fruits of the variety SLG were consistently more resistant to anthracnose than the fruits of RM.","PeriodicalId":20075,"journal":{"name":"Plant Pathology","volume":"34 1","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-02-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139917778","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Plant Pathology
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