Main conclusion: Nutrient deficiency intensifies drought and salinity stress on rice growth. Bacillus amyloliquefaciens inoculation provides resilience through modulation in metabolic and gene regulation to enhance growth, nutrient uptake, and stress tolerance. Soil nutrient deficiencies amplify the detrimental effects of abiotic stresses, such as drought and salinity, creating substantial challenges for overall plant health and crop productivity. Traditional methods for developing stress-resistant varieties are often slow and labor-intensive. Previously, we demonstrated that plant growth-promoting rhizobacteria Bacillus amyloliquefaciens strain SN13 effectively alleviates stress induced by sub-optimum nutrient conditions in rice. In this study, we evaluated the effectiveness of SN13 in reducing the compounded impacts of drought and salinity under varying nutrient regimes in rice seedlings. The results demonstrated that PGPR inoculation not only improved the growth parameters, nutrient content, and physio-biochemical characteristics under nutrient-limited conditions, but also reduced the oxidative stress markers. The altered expression of stress-related and transcription factor genes (USP, DEF, CYP450, GST, MYB, and bZIP) revealed the regulatory effect of PGPR in enhancing stress tolerance through these genes. GC-MS-based untargeted metabolomic analysis revealed that PGPR significantly influenced various metabolic pathways, including galactose metabolism, fructose and mannose metabolism, and fatty acid biosynthesis pathways, suggesting that PGPR affects both energy production and stress-protective mechanisms, facilitating better growth and survival of rice seedlings.
{"title":"Plant growth-promoting Bacillus amyloliquefaciens orchestrate homeostasis under nutrient deficiency exacerbated drought and salinity stress in Oryza sativa L. seedlings.","authors":"Nikita Bisht, Tanya Singh, Mohd Mogees Ansari, Harshita Joshi, Shahank Kumar Mishra, Puneet Singh Chauhan","doi":"10.1007/s00425-024-04585-x","DOIUrl":"10.1007/s00425-024-04585-x","url":null,"abstract":"<p><strong>Main conclusion: </strong>Nutrient deficiency intensifies drought and salinity stress on rice growth. Bacillus amyloliquefaciens inoculation provides resilience through modulation in metabolic and gene regulation to enhance growth, nutrient uptake, and stress tolerance. Soil nutrient deficiencies amplify the detrimental effects of abiotic stresses, such as drought and salinity, creating substantial challenges for overall plant health and crop productivity. Traditional methods for developing stress-resistant varieties are often slow and labor-intensive. Previously, we demonstrated that plant growth-promoting rhizobacteria Bacillus amyloliquefaciens strain SN13 effectively alleviates stress induced by sub-optimum nutrient conditions in rice. In this study, we evaluated the effectiveness of SN13 in reducing the compounded impacts of drought and salinity under varying nutrient regimes in rice seedlings. The results demonstrated that PGPR inoculation not only improved the growth parameters, nutrient content, and physio-biochemical characteristics under nutrient-limited conditions, but also reduced the oxidative stress markers. The altered expression of stress-related and transcription factor genes (USP, DEF, CYP450, GST, MYB, and bZIP) revealed the regulatory effect of PGPR in enhancing stress tolerance through these genes. GC-MS-based untargeted metabolomic analysis revealed that PGPR significantly influenced various metabolic pathways, including galactose metabolism, fructose and mannose metabolism, and fatty acid biosynthesis pathways, suggesting that PGPR affects both energy production and stress-protective mechanisms, facilitating better growth and survival of rice seedlings.</p>","PeriodicalId":20177,"journal":{"name":"Planta","volume":"261 1","pages":"8"},"PeriodicalIF":3.6,"publicationDate":"2024-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142792327","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Main conclusion: Phosphatidylinositol 4-phosphate 5-kinase gene CaPIP5K4-1 is highly expressed in the pepper anthers. Virus-induced gene silencing of CaPIP5K4-1 leads to reduced male fertility in pepper. The phosphatidylinositol 4-phosphate 5-kinase (PIP5K) is a pivotal enzyme in the phosphatidylinositol signaling pathway, and its crucial involvement in both plant development and stress response has been established. Here, we found that the expression of CaPIP5K4-1 in pepper was significantly higher in the fertile flower buds compared to sterile flower buds. Furthermore, its expression was validated in anthers and pollens by qRT-PCR and RNA-ISH assays, respectively. Its GFP fusion protein was mainly located on the plasma membrane. Silencing CaPIP5K4-1 in fertile pepper accessions resulted in wrinkled pollen grain cell walls, decreased pollen germination efficiency, and inhibited pollen tube growth. The transcription levels of multiple genes in the phosphatidylinositol signaling pathway were also assessed. Five phospholipase C (PLC) genes were downregulated in silenced plants. On the contrary, inositol phosphatase SAC and phosphatase and tensin homolog (PTEN) were upregulated. This study reported the role of CaPIP5K4-1 in pepper male fertility and provided insights into the regulatory mechanisms of PI signaling in pepper.
{"title":"Silencing CaPIP5K4-1 leads to decreased male fertility in Capsicum annuum L.","authors":"Weifu Kong, Panpan Duan, Yuhang Wang, Tao Zhang, Mianzhu Huang, Jingtao Kang, Lina Wang, Bingqiang Wei, Yajun Chang","doi":"10.1007/s00425-024-04584-y","DOIUrl":"10.1007/s00425-024-04584-y","url":null,"abstract":"<p><strong>Main conclusion: </strong>Phosphatidylinositol 4-phosphate 5-kinase gene CaPIP5K4-1 is highly expressed in the pepper anthers. Virus-induced gene silencing of CaPIP5K4-1 leads to reduced male fertility in pepper. The phosphatidylinositol 4-phosphate 5-kinase (PIP5K) is a pivotal enzyme in the phosphatidylinositol signaling pathway, and its crucial involvement in both plant development and stress response has been established. Here, we found that the expression of CaPIP5K4-1 in pepper was significantly higher in the fertile flower buds compared to sterile flower buds. Furthermore, its expression was validated in anthers and pollens by qRT-PCR and RNA-ISH assays, respectively. Its GFP fusion protein was mainly located on the plasma membrane. Silencing CaPIP5K4-1 in fertile pepper accessions resulted in wrinkled pollen grain cell walls, decreased pollen germination efficiency, and inhibited pollen tube growth. The transcription levels of multiple genes in the phosphatidylinositol signaling pathway were also assessed. Five phospholipase C (PLC) genes were downregulated in silenced plants. On the contrary, inositol phosphatase SAC and phosphatase and tensin homolog (PTEN) were upregulated. This study reported the role of CaPIP5K4-1 in pepper male fertility and provided insights into the regulatory mechanisms of PI signaling in pepper.</p>","PeriodicalId":20177,"journal":{"name":"Planta","volume":"261 1","pages":"7"},"PeriodicalIF":3.6,"publicationDate":"2024-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142771068","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-03DOI: 10.1007/s00425-024-04579-9
Dong Liu, Ming-Juan Li, Jin-Song Luo, Hai-Fei Chen, Yong Yang, Gui Xiao, Jun Wu, Abdelbagi M Ismail, Zhen-Hua Zhang
Main conclusion: Overexpression of OsSTP1 enhances the non-structural carbohydrate remobilization in the source, starch accumulation in grains, and the transportation of carbohydrates from source to sink during the filling stage. The sugar transporter protein (STP) is the best-characterized subfamily of the monosaccharide transporter (MST) family and plays critical roles in regulating plant stress tolerance, growth, and development. However, the role of STPs in regulating rice yield is poorly understood. In this study, we report that compared with Taipei 309, overexpression of OsSTP1 can achieve higher rice yield. We demonstrate that OsSTP1 mRNA levels are higher than those of the other seven STPs in mixed samples of leaf sheaths, stems, and nodes at 12 days after pollination (DAP). OsSTP1 is prominently expressed in the leaf sheaths, stems, and nodes at the grain filling stage. Subcellular localization analysis revealed that OsSTP1 is localized in the plasma membrane. Overexpression of OsSTP1 increased the activities of amylase (AMY) and sucrose phosphate synthase (SPS) in mixed samples of leaf sheaths, stems, and nodes at 12 DAP, the sucrose content of the phloem exudate, and accumulation of soluble sugars and starch in panicles, ultimately increasing seed-setting rates and grain yields in the Taipei 309 cultivar. These findings indicate that overexpression of OsSTP1 can improve grain yield by synergistically promoting non-structural carbohydrate (NSC) remobilization and transportation.
{"title":"Overexpression of OsSTP1 increases grain yield via enhancing carbohydrate metabolism and transport in rice.","authors":"Dong Liu, Ming-Juan Li, Jin-Song Luo, Hai-Fei Chen, Yong Yang, Gui Xiao, Jun Wu, Abdelbagi M Ismail, Zhen-Hua Zhang","doi":"10.1007/s00425-024-04579-9","DOIUrl":"10.1007/s00425-024-04579-9","url":null,"abstract":"<p><strong>Main conclusion: </strong>Overexpression of OsSTP1 enhances the non-structural carbohydrate remobilization in the source, starch accumulation in grains, and the transportation of carbohydrates from source to sink during the filling stage. The sugar transporter protein (STP) is the best-characterized subfamily of the monosaccharide transporter (MST) family and plays critical roles in regulating plant stress tolerance, growth, and development. However, the role of STPs in regulating rice yield is poorly understood. In this study, we report that compared with Taipei 309, overexpression of OsSTP1 can achieve higher rice yield. We demonstrate that OsSTP1 mRNA levels are higher than those of the other seven STPs in mixed samples of leaf sheaths, stems, and nodes at 12 days after pollination (DAP). OsSTP1 is prominently expressed in the leaf sheaths, stems, and nodes at the grain filling stage. Subcellular localization analysis revealed that OsSTP1 is localized in the plasma membrane. Overexpression of OsSTP1 increased the activities of amylase (AMY) and sucrose phosphate synthase (SPS) in mixed samples of leaf sheaths, stems, and nodes at 12 DAP, the sucrose content of the phloem exudate, and accumulation of soluble sugars and starch in panicles, ultimately increasing seed-setting rates and grain yields in the Taipei 309 cultivar. These findings indicate that overexpression of OsSTP1 can improve grain yield by synergistically promoting non-structural carbohydrate (NSC) remobilization and transportation.</p>","PeriodicalId":20177,"journal":{"name":"Planta","volume":"261 1","pages":"5"},"PeriodicalIF":3.6,"publicationDate":"2024-12-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142771064","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-03DOI: 10.1007/s00425-024-04580-2
John M Grunseich, Pei-Cheng Huang, Julio S Bernal, Michael Kolomiets
Main conclusion: Larva growth, survival, and development speed were not affected by the absence of jasmonic acid (JA) indicating that JA does not have a direct role in maize resistance to western corn rootworm. Jasmonic acid (JA) is a plant hormone that regulates multiple physiological processes including defense against herbivory by chewing insects. Previous research showed its importance for resistance to aboveground herbivory. While few studies have investigated the role of JA in resistance to belowground root-feeding herbivores, none has directly tested the role of JA in such resistance. In this study, we used an opr7opr8 double mutant to directly test the role of JA in resistance to western corn rootworm (Diabrotica virgifera virgifera, WCR), a devastating and specialist pest of maize. The opr7opr8 double mutant is deficient in JA accumulation as we found that it does not accumulate JA nor JA-Ile independently of exposure to WCR. We found no significant difference in growth (body mass), survival, and development of WCR larvae in response to JA deficiency, suggesting that disruption of JA biosynthesis does not impact resistance in maize roots to WCR. Additionally, we observed no significant effect on loss of root tissue caused by WCR associated with JA deficiency, while we found a reduction in shoot growth (mass) associated with WCR herbivory in the opr7opr8 mutant that was not observed in the wildtype. This suggested a role for JA in aboveground growth response to WCR herbivory rather than resistance to WCR.
{"title":"Western corn rootworm resistance in maize persists in the absence of jasmonic acid.","authors":"John M Grunseich, Pei-Cheng Huang, Julio S Bernal, Michael Kolomiets","doi":"10.1007/s00425-024-04580-2","DOIUrl":"10.1007/s00425-024-04580-2","url":null,"abstract":"<p><strong>Main conclusion: </strong>Larva growth, survival, and development speed were not affected by the absence of jasmonic acid (JA) indicating that JA does not have a direct role in maize resistance to western corn rootworm. Jasmonic acid (JA) is a plant hormone that regulates multiple physiological processes including defense against herbivory by chewing insects. Previous research showed its importance for resistance to aboveground herbivory. While few studies have investigated the role of JA in resistance to belowground root-feeding herbivores, none has directly tested the role of JA in such resistance. In this study, we used an opr7opr8 double mutant to directly test the role of JA in resistance to western corn rootworm (Diabrotica virgifera virgifera, WCR), a devastating and specialist pest of maize. The opr7opr8 double mutant is deficient in JA accumulation as we found that it does not accumulate JA nor JA-Ile independently of exposure to WCR. We found no significant difference in growth (body mass), survival, and development of WCR larvae in response to JA deficiency, suggesting that disruption of JA biosynthesis does not impact resistance in maize roots to WCR. Additionally, we observed no significant effect on loss of root tissue caused by WCR associated with JA deficiency, while we found a reduction in shoot growth (mass) associated with WCR herbivory in the opr7opr8 mutant that was not observed in the wildtype. This suggested a role for JA in aboveground growth response to WCR herbivory rather than resistance to WCR.</p>","PeriodicalId":20177,"journal":{"name":"Planta","volume":"261 1","pages":"6"},"PeriodicalIF":3.6,"publicationDate":"2024-12-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142771091","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-29DOI: 10.1007/s00425-024-04581-1
Amnon Cochavi
Main conclusion: In contrast to other plant pests, broomrape, parasitic plant, rely on maintaining the productivity of the host plant to complete their life cycle. Parasitic plants, particularly those in the Orobanchaceae family, rely on their host plants to complete their life cycle. Unlike other plant parasites such as fungi and bacteria, which exploit their hosts regardless of their physiological status, parasitic plants development is linked to the host productivity due to their mutual physiological dependence on water availability and sugar metabolism. Presently, most research focuses on the damage caused to the host after the parasite completes its life cycle, including inflorescence emergence and seed dispersal. However, the interaction between parasite and host begins long before these stages. This implies that certain physiological adaptations are necessary to sustain the parasite's development while maintaining the host's productivity. In this review, I compile existing knowledge regarding changes in host physiology during the early developmental stages of parasitic plants, spanning from attachment to inflorescence emergence. Additionally, I highlight knowledge gaps that should be addressed to understand how hosts sustain themselves throughout extended periods of parasitism.
{"title":"Broomrape-host interaction: host morphology and physiology as metrics for infestation.","authors":"Amnon Cochavi","doi":"10.1007/s00425-024-04581-1","DOIUrl":"10.1007/s00425-024-04581-1","url":null,"abstract":"<p><strong>Main conclusion: </strong>In contrast to other plant pests, broomrape, parasitic plant, rely on maintaining the productivity of the host plant to complete their life cycle. Parasitic plants, particularly those in the Orobanchaceae family, rely on their host plants to complete their life cycle. Unlike other plant parasites such as fungi and bacteria, which exploit their hosts regardless of their physiological status, parasitic plants development is linked to the host productivity due to their mutual physiological dependence on water availability and sugar metabolism. Presently, most research focuses on the damage caused to the host after the parasite completes its life cycle, including inflorescence emergence and seed dispersal. However, the interaction between parasite and host begins long before these stages. This implies that certain physiological adaptations are necessary to sustain the parasite's development while maintaining the host's productivity. In this review, I compile existing knowledge regarding changes in host physiology during the early developmental stages of parasitic plants, spanning from attachment to inflorescence emergence. Additionally, I highlight knowledge gaps that should be addressed to understand how hosts sustain themselves throughout extended periods of parasitism.</p>","PeriodicalId":20177,"journal":{"name":"Planta","volume":"261 1","pages":"4"},"PeriodicalIF":3.6,"publicationDate":"2024-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11607093/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142751023","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-24DOI: 10.1007/s00425-024-04576-y
Saba Fatima, Saeeda Zaima Zeb, Moh Tariq, Yasar Nishat, Heba I Mohamed, Mansoor A Siddiqui
Main conclusion: We summarize recent findings that have provided new insights into the mechanisms underlying CLE signaling systems in the regulation of plant development and phytonematode interactions. CLAVATA3/EMBRYO SURROUNDING REGION-RELATED (CLE) peptides are short sequences consisting of 12 or 13 amino acids characterized by hydroxylated proline residues, and their presence has been demonstrated in various plant species and phytonematodes across multiple paralogous genes. Here, we review recently conducted research to understanding the signaling pathway of CLE peptide during plant development and infection caused by phytonematodes. Cell-to-cell communication is important for the coherent functioning of living organisms. CLE peptides combined with their specific transmembrane receptors to induce downstream intracellular signaling pathways shows divergent modes of action in many developmental processes in variable species. Moreover, CLE peptide was also involved in plant disease mechanism caused by various plant parasitic nematodes.
{"title":"Role of CLE peptide signaling in root-knot nematode parasitism of plants.","authors":"Saba Fatima, Saeeda Zaima Zeb, Moh Tariq, Yasar Nishat, Heba I Mohamed, Mansoor A Siddiqui","doi":"10.1007/s00425-024-04576-y","DOIUrl":"10.1007/s00425-024-04576-y","url":null,"abstract":"<p><strong>Main conclusion: </strong>We summarize recent findings that have provided new insights into the mechanisms underlying CLE signaling systems in the regulation of plant development and phytonematode interactions. CLAVATA3/EMBRYO SURROUNDING REGION-RELATED (CLE) peptides are short sequences consisting of 12 or 13 amino acids characterized by hydroxylated proline residues, and their presence has been demonstrated in various plant species and phytonematodes across multiple paralogous genes. Here, we review recently conducted research to understanding the signaling pathway of CLE peptide during plant development and infection caused by phytonematodes. Cell-to-cell communication is important for the coherent functioning of living organisms. CLE peptides combined with their specific transmembrane receptors to induce downstream intracellular signaling pathways shows divergent modes of action in many developmental processes in variable species. Moreover, CLE peptide was also involved in plant disease mechanism caused by various plant parasitic nematodes.</p>","PeriodicalId":20177,"journal":{"name":"Planta","volume":"261 1","pages":"3"},"PeriodicalIF":3.6,"publicationDate":"2024-11-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142710708","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-23DOI: 10.1007/s00425-024-04578-w
Khushbu Kumari, Suman Gusain, Rohit Joshi
Main conclusion: This paper highlights the need for innovative approaches to enhance cold tolerance. It underscores how genome-editing tools can deepen our understanding of genes involved in cold stress. Cold stress is a significant abiotic factor in high-altitude regions, adversely affecting plant growth and limiting crop productivity. Plants have evolved various mechanisms in response to low temperatures that enable resistance at both physiological and molecular levels during chilling and freezing stress. Several cold-inducible genes have been isolated and characterized, with most playing key roles in providing tolerance against low-temperature stress. However, many plants fail to survive at low temperatures due to the absence of cold acclimatization mechanisms. Conventional breeding techniques, such as inter-specific or inter-genic hybridization, have had limited effectiveness in enhancing the cold resistance of essential crops. Thus, it is crucial to develop crops with improved adaptability, high yields and resistance to cold stress using advanced genomic approaches. The current availability of gene editing tools offers the opportunity to introduce targeted modifications in plant genomes efficiently, thereby developing cold-tolerant varieties. This review discusses advancements in gene editing tools, including zinc finger nucleases (ZFNs), transcription activator-like effector nucleases (TALENs), clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9)/Cas12a(Cpf1), prime editing (PE) and retron library recombineering (RLR). We focus specifically on the CRISPR/Cas system, which has garnered significant attention in recent years as a groundbreaking tool for genome editing across various species. These techniques will enhance our understanding of molecular interactions under low-temperature stress response and highlight the progress of genome editing in designing future climate-resilient crops.
{"title":"Engineering cold resilience: implementing gene editing tools for plant cold stress tolerance.","authors":"Khushbu Kumari, Suman Gusain, Rohit Joshi","doi":"10.1007/s00425-024-04578-w","DOIUrl":"10.1007/s00425-024-04578-w","url":null,"abstract":"<p><strong>Main conclusion: </strong>This paper highlights the need for innovative approaches to enhance cold tolerance. It underscores how genome-editing tools can deepen our understanding of genes involved in cold stress. Cold stress is a significant abiotic factor in high-altitude regions, adversely affecting plant growth and limiting crop productivity. Plants have evolved various mechanisms in response to low temperatures that enable resistance at both physiological and molecular levels during chilling and freezing stress. Several cold-inducible genes have been isolated and characterized, with most playing key roles in providing tolerance against low-temperature stress. However, many plants fail to survive at low temperatures due to the absence of cold acclimatization mechanisms. Conventional breeding techniques, such as inter-specific or inter-genic hybridization, have had limited effectiveness in enhancing the cold resistance of essential crops. Thus, it is crucial to develop crops with improved adaptability, high yields and resistance to cold stress using advanced genomic approaches. The current availability of gene editing tools offers the opportunity to introduce targeted modifications in plant genomes efficiently, thereby developing cold-tolerant varieties. This review discusses advancements in gene editing tools, including zinc finger nucleases (ZFNs), transcription activator-like effector nucleases (TALENs), clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9)/Cas12a(Cpf1), prime editing (PE) and retron library recombineering (RLR). We focus specifically on the CRISPR/Cas system, which has garnered significant attention in recent years as a groundbreaking tool for genome editing across various species. These techniques will enhance our understanding of molecular interactions under low-temperature stress response and highlight the progress of genome editing in designing future climate-resilient crops.</p>","PeriodicalId":20177,"journal":{"name":"Planta","volume":"261 1","pages":"2"},"PeriodicalIF":3.6,"publicationDate":"2024-11-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142695657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Starch degradation, a crucial source for soluble sugar, significantly influences fruit flavor development during ripening. Key enzymes in this process include α-amylases (AMYs) and β-amylases (BAMs). In this study, we identified 5 PpAMYs and 9 PpBAMs in peach and categorized them into three and four groups, respectively, based on the gene structures and the phylogenetic analysis. Subsequent expression analysis revealed that elevated levels of PpAMY1, PpAMY5, and PpBAM2 were detected in the middle and late stages of fruit development, suggesting their positive involvement in starch degradation during peach fruit ripening. Transient overexpression experiments conducted in peach fruits and callus further demonstrated that overexpression of PpBAM2 significantly reduced starch content, indicating its important role in starch degradation during peach fruit ripening. Furthermore, we identified a R2R3-MYB transcription factor, PpMYB10.1, which activated the expression of PpBAM2 through the direct interacting with its promoter. In addition, transient overexpression of PpMYB10.1 could significantly reduce starch content in peach callus. Consequently, our findings highlight the positive role of PpBAM2 in peach starch degradation, with PpMYB10.1 serving as an activator during this process.
{"title":"PpMYB10.1 regulates peach fruit starch degradation by activating PpBAM2.","authors":"Jieyu Dai, Zhouheng Fang, Jingwen Zhu, Xuyang Zheng, Qianjin Zhan, Lijun Cao, Yanan Hu, Caiping Zhao","doi":"10.1007/s00425-024-04575-z","DOIUrl":"10.1007/s00425-024-04575-z","url":null,"abstract":"<p><p>Starch degradation, a crucial source for soluble sugar, significantly influences fruit flavor development during ripening. Key enzymes in this process include α-amylases (AMYs) and β-amylases (BAMs). In this study, we identified 5 PpAMYs and 9 PpBAMs in peach and categorized them into three and four groups, respectively, based on the gene structures and the phylogenetic analysis. Subsequent expression analysis revealed that elevated levels of PpAMY1, PpAMY5, and PpBAM2 were detected in the middle and late stages of fruit development, suggesting their positive involvement in starch degradation during peach fruit ripening. Transient overexpression experiments conducted in peach fruits and callus further demonstrated that overexpression of PpBAM2 significantly reduced starch content, indicating its important role in starch degradation during peach fruit ripening. Furthermore, we identified a R2R3-MYB transcription factor, PpMYB10.1, which activated the expression of PpBAM2 through the direct interacting with its promoter. In addition, transient overexpression of PpMYB10.1 could significantly reduce starch content in peach callus. Consequently, our findings highlight the positive role of PpBAM2 in peach starch degradation, with PpMYB10.1 serving as an activator during this process.</p>","PeriodicalId":20177,"journal":{"name":"Planta","volume":"261 1","pages":"1"},"PeriodicalIF":3.6,"publicationDate":"2024-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142686766","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-20DOI: 10.1007/s00425-024-04558-0
Hyeonjin Kim, Yelim Lee, Jihyeon Yu, Jong-Yoon Park, Jungeun Lee, Sang-Gyu Kim, Youbong Hyun
Main conclusion: The microbial terpene synthase-like of the moss Sanionia uncinata displays the convergent evolution of a rare plant metabolite amorpha-4,11-diene synthesis. Despite increasing demand for the exploration of biological resources, the diversity of natural compounds synthesized by organisms inhabiting various climates remains largely unexplored. This study focuses on the moss Sanionia uncinata, known as a predominant species within the polar climates of the Antarctic Peninsula, to systematically explore its metabolic profile both in-field and in controlled environments. We here report a diverse array of moss-derived terpene volatiles, including the identification of amorpha-4,11-diene, a rare sesquiterpene compound that is a precursor for antimalarial drugs. Phylogenetic reconstruction and functional validation in planta and in vitro identified a moss terpene synthase, S. uncinata microbial terpene synthase-like 2 (SuMTPSL2), which is associated with amorpha-4,11-diene production. We demonstrate that expressing SuMTPSL2 in various heterologous systems is sufficient to produce amorpha-4,11-diene. These results highlight the metabolic diversity in Antarctica, but also provide insights into the convergent evolution leading to the synthesis of a rare plant metabolite.
{"title":"Production of the antimalarial drug precursor amorphadiene by microbial terpene synthase-like from the moss Sanionia uncinata.","authors":"Hyeonjin Kim, Yelim Lee, Jihyeon Yu, Jong-Yoon Park, Jungeun Lee, Sang-Gyu Kim, Youbong Hyun","doi":"10.1007/s00425-024-04558-0","DOIUrl":"10.1007/s00425-024-04558-0","url":null,"abstract":"<p><strong>Main conclusion: </strong>The microbial terpene synthase-like of the moss Sanionia uncinata displays the convergent evolution of a rare plant metabolite amorpha-4,11-diene synthesis. Despite increasing demand for the exploration of biological resources, the diversity of natural compounds synthesized by organisms inhabiting various climates remains largely unexplored. This study focuses on the moss Sanionia uncinata, known as a predominant species within the polar climates of the Antarctic Peninsula, to systematically explore its metabolic profile both in-field and in controlled environments. We here report a diverse array of moss-derived terpene volatiles, including the identification of amorpha-4,11-diene, a rare sesquiterpene compound that is a precursor for antimalarial drugs. Phylogenetic reconstruction and functional validation in planta and in vitro identified a moss terpene synthase, S. uncinata microbial terpene synthase-like 2 (SuMTPSL2), which is associated with amorpha-4,11-diene production. We demonstrate that expressing SuMTPSL2 in various heterologous systems is sufficient to produce amorpha-4,11-diene. These results highlight the metabolic diversity in Antarctica, but also provide insights into the convergent evolution leading to the synthesis of a rare plant metabolite.</p>","PeriodicalId":20177,"journal":{"name":"Planta","volume":"260 6","pages":"145"},"PeriodicalIF":3.6,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11579073/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142676560","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-19DOI: 10.1007/s00425-024-04572-2
Zhaniya Batyrshina, Anna K Block, Gilles J Basset
Main conclusion: The contribution of p-coumarate β-oxidation and kaempferol cleavage to the pools of glycosylated, free and cell wall-bound 4-hydroxybenzoate is organ-dependent in Arabidopsis. 4-Hydroxybenzoate (4-HB) is a vital precursor for a number of plant primary and specialized metabolites, as well as for the assembly of the plant cell wall. In Arabidopsis, it is known that 4-HB is derived independently from phenylalanine and tyrosine, and that the metabolism of phenylalanine into 4-HB proceeds via at least two biosynthetic routes: the β-oxidation of p-coumarate and the peroxidative cleavage of kaempferol. The precise contribution of these precursors and branches to 4-HB production, however, is not known. Here, we combined isotopic feeding assays, reverse genetics, and quantification of soluble (i.e., free and glycosylated) and cell wall-bound 4-HB to determine the respective contributions of phenylalanine, tyrosine, β-oxidation of p-coumarate, and peroxidative cleavage of kaempferol to 4-HB biosynthesis in Arabidopsis tissues. Over 90% of 4-HB was found to originate from phenylalanine in both leaves and roots. Soluble 4-HB level varied significantly between organs, while the proportion of cell wall-bound 4-HB was relatively constant. In leaves and flowers, glycosylated and cell wall-bound 4-HB were the most and least abundant forms, respectively. Flowers displayed the highest specific content of 4-HB, while free 4-HB was not detected in roots. Although p-coumarate β-oxidation and kaempferol catabolism were found to both contribute to the supply of 4-HB in all tissues, the proportion of kaempferol-derived 4-HB was higher in roots than in leaves and flowers. Within the β-oxidative branch, p-coumaroyl-CoA ligase 4-CL8 (At5g38120) bore a preponderant role in the production of soluble and cell wall-bound 4-HB in leaves, while p-coumaroyl-CoA ligase At4g19010 appeared to control the biosynthesis of soluble 4-HB in flowers. Furthermore, analysis of a series of Arabidopsis T-DNA mutants corresponding to the three major UDP-glucosyltransferases known to act on 4-HB in vitro (UGT75B1, UGT89B1, and UGT71B1) showed that none of these enzymes appeared in fact to have a significant role in the glycosylation of 4-HB in vivo.
{"title":"The origin and metabolic fate of 4-hydroxybenzoate in Arabidopsis.","authors":"Zhaniya Batyrshina, Anna K Block, Gilles J Basset","doi":"10.1007/s00425-024-04572-2","DOIUrl":"10.1007/s00425-024-04572-2","url":null,"abstract":"<p><strong>Main conclusion: </strong>The contribution of p-coumarate β-oxidation and kaempferol cleavage to the pools of glycosylated, free and cell wall-bound 4-hydroxybenzoate is organ-dependent in Arabidopsis. 4-Hydroxybenzoate (4-HB) is a vital precursor for a number of plant primary and specialized metabolites, as well as for the assembly of the plant cell wall. In Arabidopsis, it is known that 4-HB is derived independently from phenylalanine and tyrosine, and that the metabolism of phenylalanine into 4-HB proceeds via at least two biosynthetic routes: the β-oxidation of p-coumarate and the peroxidative cleavage of kaempferol. The precise contribution of these precursors and branches to 4-HB production, however, is not known. Here, we combined isotopic feeding assays, reverse genetics, and quantification of soluble (i.e., free and glycosylated) and cell wall-bound 4-HB to determine the respective contributions of phenylalanine, tyrosine, β-oxidation of p-coumarate, and peroxidative cleavage of kaempferol to 4-HB biosynthesis in Arabidopsis tissues. Over 90% of 4-HB was found to originate from phenylalanine in both leaves and roots. Soluble 4-HB level varied significantly between organs, while the proportion of cell wall-bound 4-HB was relatively constant. In leaves and flowers, glycosylated and cell wall-bound 4-HB were the most and least abundant forms, respectively. Flowers displayed the highest specific content of 4-HB, while free 4-HB was not detected in roots. Although p-coumarate β-oxidation and kaempferol catabolism were found to both contribute to the supply of 4-HB in all tissues, the proportion of kaempferol-derived 4-HB was higher in roots than in leaves and flowers. Within the β-oxidative branch, p-coumaroyl-CoA ligase 4-CL8 (At5g38120) bore a preponderant role in the production of soluble and cell wall-bound 4-HB in leaves, while p-coumaroyl-CoA ligase At4g19010 appeared to control the biosynthesis of soluble 4-HB in flowers. Furthermore, analysis of a series of Arabidopsis T-DNA mutants corresponding to the three major UDP-glucosyltransferases known to act on 4-HB in vitro (UGT75B1, UGT89B1, and UGT71B1) showed that none of these enzymes appeared in fact to have a significant role in the glycosylation of 4-HB in vivo.</p>","PeriodicalId":20177,"journal":{"name":"Planta","volume":"260 6","pages":"144"},"PeriodicalIF":3.6,"publicationDate":"2024-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142668693","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}